Query psy15610
Match_columns 237
No_of_seqs 146 out of 2004
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 17:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6n_A ATP-dependent RNA helic 100.0 4.1E-32 1.4E-36 210.6 14.0 155 3-216 8-162 (191)
2 2hjv_A ATP-dependent RNA helic 100.0 4.7E-30 1.6E-34 194.1 14.4 145 18-220 3-147 (163)
3 1t5i_A C_terminal domain of A 100.0 9E-30 3.1E-34 194.3 14.0 138 21-216 2-139 (172)
4 2rb4_A ATP-dependent RNA helic 100.0 2.3E-29 8E-34 192.5 14.9 144 20-221 3-153 (175)
5 2jgn_A DBX, DDX3, ATP-dependen 100.0 1E-29 3.5E-34 196.1 11.6 150 16-222 11-160 (185)
6 1fuk_A Eukaryotic initiation f 100.0 3.1E-29 1.1E-33 190.0 13.8 141 23-221 2-143 (165)
7 2db3_A ATP-dependent RNA helic 100.0 1.1E-28 3.9E-33 213.9 14.9 176 2-236 253-433 (434)
8 3eaq_A Heat resistant RNA depe 100.0 6.2E-28 2.1E-32 190.1 13.5 136 24-217 5-140 (212)
9 3i32_A Heat resistant RNA depe 99.9 2.2E-27 7.6E-32 195.7 13.6 136 24-217 2-137 (300)
10 2yjt_D ATP-dependent RNA helic 99.9 2.2E-29 7.6E-34 191.7 0.0 145 23-225 2-147 (170)
11 2i4i_A ATP-dependent RNA helic 99.9 5.3E-26 1.8E-30 195.4 14.6 176 2-234 227-406 (417)
12 2j0s_A ATP-dependent RNA helic 99.9 6.1E-26 2.1E-30 194.9 13.8 158 2-217 227-385 (410)
13 1xti_A Probable ATP-dependent 99.9 1.1E-24 3.9E-29 185.6 17.4 157 2-216 201-358 (391)
14 1s2m_A Putative ATP-dependent 99.9 9.3E-25 3.2E-29 186.8 15.0 158 3-219 212-369 (400)
15 3eiq_A Eukaryotic initiation f 99.9 2.6E-25 8.7E-30 190.9 10.9 162 2-221 231-393 (414)
16 3fht_A ATP-dependent RNA helic 99.9 1.9E-24 6.6E-29 185.2 15.3 157 2-216 217-380 (412)
17 3pey_A ATP-dependent RNA helic 99.9 3.8E-24 1.3E-28 182.1 15.8 157 2-216 194-357 (395)
18 1hv8_A Putative ATP-dependent 99.9 7.1E-24 2.4E-28 178.8 17.2 152 3-217 196-347 (367)
19 2v1x_A ATP-dependent DNA helic 99.9 1.5E-23 5.1E-28 187.7 15.1 163 55-217 199-376 (591)
20 1oyw_A RECQ helicase, ATP-depe 99.9 1.1E-23 3.7E-28 186.5 13.1 111 107-217 235-345 (523)
21 3fmp_B ATP-dependent RNA helic 99.9 2.6E-25 9.1E-30 194.9 1.6 157 2-216 284-447 (479)
22 3i5x_A ATP-dependent RNA helic 99.9 4.6E-23 1.6E-27 184.0 15.4 116 106-221 337-455 (563)
23 1fuu_A Yeast initiation factor 99.9 4.2E-25 1.4E-29 188.3 1.6 118 108-225 259-376 (394)
24 3sqw_A ATP-dependent RNA helic 99.9 1.3E-22 4.5E-27 181.7 14.3 111 108-218 288-401 (579)
25 3fho_A ATP-dependent RNA helic 99.9 3.3E-23 1.1E-27 182.9 8.3 158 2-217 308-472 (508)
26 2z0m_A 337AA long hypothetical 99.9 1.6E-21 5.5E-26 162.6 12.5 104 106-213 218-321 (337)
27 1z5z_A Helicase of the SNF2/RA 99.9 1.1E-21 3.7E-26 159.7 9.0 109 107-215 111-224 (271)
28 1wp9_A ATP-dependent RNA helic 99.8 1.8E-21 6.1E-26 169.3 10.1 109 108-217 361-477 (494)
29 3oiy_A Reverse gyrase helicase 99.8 2.9E-21 9.9E-26 166.2 9.5 99 108-212 252-362 (414)
30 4a2p_A RIG-I, retinoic acid in 99.8 3.1E-21 1.1E-25 171.4 8.8 108 107-216 389-509 (556)
31 2xgj_A ATP-dependent RNA helic 99.8 3.3E-20 1.1E-24 174.6 15.6 109 107-215 342-499 (1010)
32 2va8_A SSO2462, SKI2-type heli 99.8 1.3E-20 4.6E-25 172.6 12.3 161 56-216 175-409 (715)
33 1tf5_A Preprotein translocase 99.8 7E-21 2.4E-25 172.9 9.0 108 108-217 432-547 (844)
34 3l9o_A ATP-dependent RNA helic 99.8 4.1E-20 1.4E-24 175.4 14.6 111 106-216 439-598 (1108)
35 2zj8_A DNA helicase, putative 99.8 2.6E-20 9E-25 170.7 12.2 158 56-216 169-388 (720)
36 1yks_A Genome polyprotein [con 99.8 9E-21 3.1E-25 164.5 8.5 167 29-213 102-297 (440)
37 2jlq_A Serine protease subunit 99.8 1.8E-20 6.2E-25 163.1 9.5 173 29-214 113-310 (451)
38 4gl2_A Interferon-induced heli 99.8 1.2E-20 4.1E-25 172.3 8.5 106 108-215 400-519 (699)
39 3tbk_A RIG-I helicase domain; 99.8 6.7E-21 2.3E-25 169.0 6.3 108 107-216 388-508 (555)
40 2p6r_A Afuhel308 helicase; pro 99.8 3.1E-20 1.1E-24 169.9 10.6 160 54-216 170-389 (702)
41 2z83_A Helicase/nucleoside tri 99.8 1E-20 3.5E-25 165.0 6.4 173 29-215 115-313 (459)
42 2xau_A PRE-mRNA-splicing facto 99.8 6.2E-20 2.1E-24 168.8 11.8 160 55-216 239-444 (773)
43 4a2q_A RIG-I, retinoic acid in 99.8 2.9E-20 9.7E-25 172.2 9.3 108 107-216 630-750 (797)
44 2wv9_A Flavivirin protease NS2 99.8 3.1E-20 1.1E-24 168.1 9.3 171 29-213 335-531 (673)
45 4f92_B U5 small nuclear ribonu 99.8 4.3E-20 1.5E-24 181.0 10.5 174 53-226 1080-1319(1724)
46 4f92_B U5 small nuclear ribonu 99.8 6.5E-20 2.2E-24 179.8 11.6 179 54-232 242-490 (1724)
47 2whx_A Serine protease/ntpase/ 99.8 4.9E-20 1.7E-24 165.6 9.7 148 55-213 307-476 (618)
48 3jux_A Protein translocase sub 99.8 2.4E-19 8.1E-24 160.2 13.8 108 108-217 474-589 (822)
49 3dmq_A RNA polymerase-associat 99.8 6.5E-20 2.2E-24 172.5 10.2 109 107-215 502-613 (968)
50 1c4o_A DNA nucleotide excision 99.8 5E-19 1.7E-23 160.5 14.2 109 107-216 438-551 (664)
51 4a2w_A RIG-I, retinoic acid in 99.8 8E-20 2.7E-24 171.5 9.1 107 107-215 630-749 (936)
52 2ykg_A Probable ATP-dependent 99.8 2.5E-20 8.7E-25 170.1 5.5 107 108-216 398-517 (696)
53 2d7d_A Uvrabc system protein B 99.8 6.5E-19 2.2E-23 159.6 14.2 109 107-216 444-557 (661)
54 2v6i_A RNA helicase; membrane, 99.8 2.6E-19 8.8E-24 155.0 10.3 172 29-213 96-288 (431)
55 2fsf_A Preprotein translocase 99.8 6.5E-19 2.2E-23 159.8 12.2 108 108-217 441-585 (853)
56 3rc3_A ATP-dependent RNA helic 99.8 5.7E-19 1.9E-23 159.7 10.8 179 28-214 241-444 (677)
57 4a4z_A Antiviral helicase SKI2 99.8 2.4E-18 8.4E-23 161.9 15.3 106 106-212 334-489 (997)
58 1gku_B Reverse gyrase, TOP-RG; 99.8 3.3E-19 1.1E-23 168.9 9.2 107 108-220 275-459 (1054)
59 2eyq_A TRCF, transcription-rep 99.8 4.1E-18 1.4E-22 162.5 14.7 109 107-215 811-922 (1151)
60 1z3i_X Similar to RAD54-like; 99.8 3.1E-18 1.1E-22 155.0 13.0 105 107-211 415-522 (644)
61 1nkt_A Preprotein translocase 99.8 3.1E-18 1.1E-22 155.8 12.6 108 108-217 460-619 (922)
62 1z63_A Helicase of the SNF2/RA 99.8 1.4E-18 4.6E-23 153.0 9.8 109 107-215 340-453 (500)
63 2fwr_A DNA repair protein RAD2 99.8 3E-19 1E-23 156.1 5.0 108 108-220 349-459 (472)
64 3o8b_A HCV NS3 protease/helica 99.8 8.3E-19 2.9E-23 157.4 7.9 104 106-219 394-518 (666)
65 4ddu_A Reverse gyrase; topoiso 99.7 1.7E-18 5.9E-23 164.3 8.7 74 108-187 309-388 (1104)
66 3mwy_W Chromo domain-containin 99.7 3.8E-18 1.3E-22 158.0 10.8 104 108-211 572-678 (800)
67 2oca_A DAR protein, ATP-depend 99.7 1.8E-18 6.3E-23 152.5 8.0 105 108-213 348-453 (510)
68 1gm5_A RECG; helicase, replica 99.7 3.4E-18 1.2E-22 156.8 7.5 109 106-214 576-696 (780)
69 3h1t_A Type I site-specific re 99.7 1E-16 3.5E-21 143.8 10.1 98 106-204 437-545 (590)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 2.6E-11 9.1E-16 114.2 11.0 106 107-213 536-707 (1038)
71 3hgt_A HDA1 complex subunit 3; 98.7 3.1E-08 1.1E-12 81.4 7.6 104 107-215 124-237 (328)
72 2ipc_A Preprotein translocase 98.5 1.7E-06 5.9E-11 79.4 12.5 39 179-217 662-700 (997)
73 2vl7_A XPD; helicase, unknown 98.2 1.9E-06 6.6E-11 76.3 7.5 104 105-214 381-520 (540)
74 4a15_A XPD helicase, ATP-depen 97.6 0.00021 7.2E-09 64.3 8.5 155 58-216 377-585 (620)
75 3crv_A XPD/RAD3 related DNA he 96.2 0.018 6.3E-07 50.8 8.8 104 105-214 390-530 (551)
76 1gm5_A RECG; helicase, replica 96.0 0.017 5.7E-07 53.3 7.6 76 107-182 416-496 (780)
77 3oiy_A Reverse gyrase helicase 95.3 0.043 1.5E-06 46.3 7.3 77 106-182 62-145 (414)
78 2hjv_A ATP-dependent RNA helic 94.5 0.018 6.1E-07 42.2 2.4 58 34-100 22-79 (163)
79 2rb4_A ATP-dependent RNA helic 94.3 0.019 6.4E-07 42.6 2.2 58 34-100 21-78 (175)
80 1t5i_A C_terminal domain of A 94.2 0.018 6.3E-07 42.6 2.0 58 34-100 18-75 (172)
81 1fuk_A Eukaryotic initiation f 94.2 0.024 8.2E-07 41.5 2.5 58 34-100 17-74 (165)
82 2eyq_A TRCF, transcription-rep 94.2 0.23 8E-06 47.8 9.8 77 106-182 650-731 (1151)
83 3i5x_A ATP-dependent RNA helic 93.8 0.075 2.6E-06 46.8 5.4 97 3-100 282-386 (563)
84 4ddu_A Reverse gyrase; topoiso 93.6 0.13 4.6E-06 49.2 7.0 77 106-182 119-202 (1104)
85 2p6n_A ATP-dependent RNA helic 93.5 0.018 6.2E-07 43.5 0.8 57 34-100 42-98 (191)
86 3eaq_A Heat resistant RNA depe 93.4 0.053 1.8E-06 41.6 3.3 56 36-100 20-75 (212)
87 2jgn_A DBX, DDX3, ATP-dependen 93.2 0.025 8.6E-07 42.4 1.1 58 34-100 32-90 (185)
88 1t6n_A Probable ATP-dependent 92.4 0.4 1.4E-05 36.3 7.0 72 108-182 82-164 (220)
89 2yjt_D ATP-dependent RNA helic 91.6 0.024 8.3E-07 41.7 0.0 40 59-98 33-72 (170)
90 1oyw_A RECQ helicase, ATP-depe 91.9 0.41 1.4E-05 41.9 7.3 59 108-166 65-123 (523)
91 3i32_A Heat resistant RNA depe 91.3 0.12 4E-06 42.0 3.0 42 59-100 31-72 (300)
92 2v1x_A ATP-dependent DNA helic 91.2 0.42 1.4E-05 42.6 6.7 59 108-166 84-144 (591)
93 3fe2_A Probable ATP-dependent 91.0 0.76 2.6E-05 35.5 7.4 71 108-182 102-182 (242)
94 2db3_A ATP-dependent RNA helic 90.2 0.11 3.8E-06 44.2 2.0 57 34-100 288-344 (434)
95 3ber_A Probable ATP-dependent 89.3 1.2 4.2E-05 34.6 7.3 72 107-182 110-192 (249)
96 2xau_A PRE-mRNA-splicing facto 88.6 0.5 1.7E-05 43.5 5.1 89 5-98 257-356 (773)
97 3jux_A Protein translocase sub 87.8 1.3 4.3E-05 40.6 7.0 131 17-158 438-573 (822)
98 1tf5_A Preprotein translocase 87.5 1.4 4.8E-05 40.7 7.3 119 29-158 409-531 (844)
99 3iuy_A Probable ATP-dependent 87.5 1.2 4.1E-05 33.9 6.0 72 107-182 93-173 (228)
100 3fht_A ATP-dependent RNA helic 86.7 0.47 1.6E-05 39.5 3.5 42 59-100 269-310 (412)
101 2gxq_A Heat resistant RNA depe 86.7 1.9 6.5E-05 32.0 6.7 71 108-182 72-150 (207)
102 2oxc_A Probable ATP-dependent 86.3 1.4 4.9E-05 33.6 5.9 71 107-182 91-172 (230)
103 3pey_A ATP-dependent RNA helic 86.2 0.57 2E-05 38.6 3.8 56 36-100 232-287 (395)
104 3eiq_A Eukaryotic initiation f 86.1 0.4 1.4E-05 40.0 2.8 56 36-100 269-324 (414)
105 2j0s_A ATP-dependent RNA helic 85.8 0.45 1.5E-05 39.7 2.9 42 59-100 279-320 (410)
106 1wrb_A DJVLGB; RNA helicase, D 85.7 2 6.7E-05 33.3 6.5 71 108-182 100-180 (253)
107 2pl3_A Probable ATP-dependent 85.2 1.4 4.8E-05 33.7 5.3 71 107-182 96-177 (236)
108 3bor_A Human initiation factor 84.9 1.5 5.3E-05 33.6 5.5 73 107-182 97-179 (237)
109 1xti_A Probable ATP-dependent 84.7 0.65 2.2E-05 38.3 3.4 58 34-100 237-294 (391)
110 1hv8_A Putative ATP-dependent 84.4 0.63 2.1E-05 37.9 3.1 42 59-100 241-282 (367)
111 3ly5_A ATP-dependent RNA helic 83.9 3.5 0.00012 32.2 7.2 72 107-182 125-207 (262)
112 3o8b_A HCV NS3 protease/helica 83.6 0.68 2.3E-05 41.8 3.2 40 55-94 395-434 (666)
113 3sqw_A ATP-dependent RNA helic 83.2 0.42 1.4E-05 42.3 1.7 98 2-100 230-335 (579)
114 1vec_A ATP-dependent RNA helic 83.1 2.6 8.8E-05 31.3 5.9 71 108-182 71-152 (206)
115 1s2m_A Putative ATP-dependent 83.0 0.69 2.4E-05 38.4 2.9 57 35-100 246-302 (400)
116 2i4i_A ATP-dependent RNA helic 82.6 0.66 2.3E-05 38.7 2.6 42 59-100 279-320 (417)
117 3fmp_B ATP-dependent RNA helic 82.3 0.26 8.9E-06 42.3 0.0 40 59-98 336-375 (479)
118 1c4o_A DNA nucleotide excision 82.1 0.89 3E-05 41.1 3.4 62 35-100 422-483 (664)
119 1gku_B Reverse gyrase, TOP-RG; 82.0 1.8 6.3E-05 41.2 5.6 74 107-182 98-181 (1054)
120 1qde_A EIF4A, translation init 81.8 1.5 5.3E-05 33.1 4.3 71 107-182 81-161 (224)
121 2d7d_A Uvrabc system protein B 81.4 0.75 2.6E-05 41.5 2.7 62 35-100 428-489 (661)
122 2fsf_A Preprotein translocase 80.1 2.2 7.7E-05 39.4 5.3 66 29-98 418-483 (853)
123 4gl2_A Interferon-induced heli 80.1 0.54 1.8E-05 42.4 1.2 45 56-100 400-458 (699)
124 1wp9_A ATP-dependent RNA helic 79.9 0.73 2.5E-05 38.9 2.0 63 36-100 343-413 (494)
125 1nkt_A Preprotein translocase 77.2 3.2 0.00011 38.7 5.3 66 29-98 437-502 (922)
126 2l82_A Designed protein OR32; 76.9 14 0.00048 24.7 11.6 58 104-162 73-133 (162)
127 3gk5_A Uncharacterized rhodane 76.7 1.7 5.8E-05 29.0 2.7 37 107-143 54-90 (108)
128 3eme_A Rhodanese-like domain p 76.4 1.8 6.1E-05 28.5 2.7 36 107-142 55-90 (103)
129 1fuu_A Yeast initiation factor 76.3 0.53 1.8E-05 38.9 0.0 91 2-98 210-301 (394)
130 3foj_A Uncharacterized protein 75.4 1.8 6.3E-05 28.3 2.6 37 107-143 55-91 (100)
131 1z5z_A Helicase of the SNF2/RA 74.3 5.9 0.0002 31.3 5.7 64 33-100 93-157 (271)
132 4a2p_A RIG-I, retinoic acid in 74.1 1.5 5.1E-05 38.0 2.3 83 36-124 372-467 (556)
133 3tbk_A RIG-I helicase domain; 73.7 2.3 7.8E-05 36.7 3.4 71 108-182 52-133 (555)
134 3iwh_A Rhodanese-like domain p 73.5 2.4 8.1E-05 28.2 2.7 36 107-142 55-90 (103)
135 4a2q_A RIG-I, retinoic acid in 72.4 4.6 0.00016 37.1 5.2 71 108-182 296-377 (797)
136 1q0u_A Bstdead; DEAD protein, 71.8 2.1 7.3E-05 32.2 2.5 71 108-182 72-156 (219)
137 1wv9_A Rhodanese homolog TT165 71.1 2.7 9.1E-05 27.1 2.5 35 109-143 54-88 (94)
138 3fho_A ATP-dependent RNA helic 71.0 0.88 3E-05 39.5 0.1 56 36-100 346-401 (508)
139 3dkp_A Probable ATP-dependent 70.3 1.2 4.2E-05 34.2 0.8 73 107-182 97-181 (245)
140 2l82_A Designed protein OR32; 70.1 20 0.00067 24.1 6.5 50 111-160 5-54 (162)
141 4a4z_A Antiviral helicase SKI2 69.7 2.4 8.3E-05 40.2 2.8 62 33-100 319-419 (997)
142 2jlq_A Serine protease subunit 69.4 3.7 0.00013 35.0 3.7 37 56-92 188-224 (451)
143 3fmo_B ATP-dependent RNA helic 68.5 3 0.0001 33.4 2.8 68 108-182 162-241 (300)
144 2z0m_A 337AA long hypothetical 67.7 11 0.00039 29.8 6.2 70 108-182 56-135 (337)
145 2fsx_A RV0390, COG0607: rhodan 67.3 6.1 0.00021 27.9 4.0 37 107-143 79-116 (148)
146 1qxn_A SUD, sulfide dehydrogen 66.8 4.7 0.00016 28.1 3.2 37 107-143 81-118 (137)
147 3nhv_A BH2092 protein; alpha-b 66.7 4.5 0.00015 28.5 3.1 37 107-143 71-109 (144)
148 3flh_A Uncharacterized protein 66.6 3.2 0.00011 28.4 2.3 37 107-143 70-108 (124)
149 2z83_A Helicase/nucleoside tri 66.2 3.7 0.00013 35.1 3.0 35 56-90 190-224 (459)
150 3dmq_A RNA polymerase-associat 66.1 4.4 0.00015 38.2 3.8 61 34-100 487-548 (968)
151 1yks_A Genome polyprotein [con 65.6 4 0.00014 34.7 3.1 35 56-90 177-211 (440)
152 2k0z_A Uncharacterized protein 65.4 7.1 0.00024 25.9 3.8 37 107-143 55-91 (110)
153 3hix_A ALR3790 protein; rhodan 64.3 3.7 0.00013 27.2 2.2 37 107-143 51-88 (106)
154 1tq1_A AT5G66040, senescence-a 64.2 4.8 0.00016 27.7 2.8 37 107-143 81-118 (129)
155 4a2w_A RIG-I, retinoic acid in 64.0 3 0.0001 39.2 2.1 63 36-100 613-687 (936)
156 3dmn_A Putative DNA helicase; 63.7 27 0.00092 25.2 7.1 63 108-185 61-123 (174)
157 3g5j_A Putative ATP/GTP bindin 63.0 4.6 0.00016 27.6 2.5 36 109-144 90-126 (134)
158 2wv9_A Flavivirin protease NS2 62.9 4.3 0.00015 36.7 2.9 34 56-89 410-443 (673)
159 2ykg_A Probable ATP-dependent 62.8 1.4 4.7E-05 39.7 -0.4 63 34-98 378-452 (696)
160 3rc3_A ATP-dependent RNA helic 61.3 12 0.0004 33.9 5.4 43 58-100 322-364 (677)
161 3ipz_A Monothiol glutaredoxin- 61.2 32 0.0011 22.6 6.9 47 108-154 17-69 (109)
162 2ipc_A Preprotein translocase 60.9 12 0.00042 35.0 5.5 55 106-166 118-176 (997)
163 2fwr_A DNA repair protein RAD2 60.7 8.2 0.00028 32.7 4.2 46 108-166 133-179 (472)
164 3zyw_A Glutaredoxin-3; metal b 60.6 34 0.0012 22.7 7.1 46 108-153 15-66 (111)
165 2jtq_A Phage shock protein E; 60.4 11 0.00039 23.4 3.9 36 107-143 40-76 (85)
166 1gmx_A GLPE protein; transfera 60.3 4.8 0.00016 26.6 2.1 38 107-144 57-95 (108)
167 3e4c_A Caspase-1; zymogen, inf 59.4 67 0.0023 25.7 9.4 106 109-222 61-190 (302)
168 1urh_A 3-mercaptopyruvate sulf 59.1 23 0.00079 27.7 6.4 39 106-144 228-267 (280)
169 2whx_A Serine protease/ntpase/ 58.9 2.8 9.7E-05 37.4 1.0 34 56-89 355-388 (618)
170 3d1p_A Putative thiosulfate su 58.7 5.9 0.0002 27.5 2.5 37 107-143 90-127 (139)
171 2hhg_A Hypothetical protein RP 58.3 5.2 0.00018 27.7 2.1 37 107-143 85-122 (139)
172 4ehd_A Caspase-3; caspase, apo 58.3 50 0.0017 26.1 8.1 110 108-225 44-173 (277)
173 2fz4_A DNA repair protein RAD2 57.0 14 0.00047 28.3 4.6 46 108-166 133-179 (237)
174 2v6i_A RNA helicase; membrane, 56.9 5.5 0.00019 33.7 2.4 35 56-90 171-205 (431)
175 1vee_A Proline-rich protein fa 56.4 8.1 0.00028 26.7 2.9 37 107-143 73-110 (134)
176 2fp3_A Caspase NC; apoptosis, 55.2 43 0.0015 27.0 7.4 112 107-222 60-191 (316)
177 3b6e_A Interferon-induced heli 55.1 5.9 0.0002 29.3 2.1 71 108-182 82-168 (216)
178 3ilm_A ALR3790 protein; rhodan 53.2 7.5 0.00026 27.2 2.3 37 107-143 55-92 (141)
179 2yan_A Glutaredoxin-3; oxidore 53.0 43 0.0015 21.6 6.6 56 108-163 16-77 (105)
180 1u6t_A SH3 domain-binding glut 52.8 25 0.00086 24.1 4.8 41 114-154 12-52 (121)
181 3cnb_A DNA-binding response re 52.0 42 0.0014 22.3 6.1 73 127-202 49-130 (143)
182 1pyo_A Caspase-2; apoptosis, c 51.8 65 0.0022 23.3 8.4 109 107-223 32-162 (167)
183 3h1t_A Type I site-specific re 51.8 14 0.00048 32.4 4.3 38 55-92 438-483 (590)
184 1uar_A Rhodanese; sulfurtransf 50.9 21 0.0007 28.0 4.8 36 107-142 232-269 (285)
185 1z3i_X Similar to RAD54-like; 50.5 24 0.00083 31.5 5.7 62 36-100 399-460 (644)
186 2dko_A Caspase-3; low barrier 49.9 64 0.0022 22.7 8.0 107 109-223 17-143 (146)
187 1wik_A Thioredoxin-like protei 49.2 52 0.0018 21.4 8.1 55 108-162 14-74 (109)
188 2j48_A Two-component sensor ki 49.0 36 0.0012 21.5 5.2 73 127-200 40-116 (119)
189 1m72_A Caspase-1; caspase, cys 48.6 96 0.0033 24.3 8.5 107 109-223 33-158 (272)
190 2wci_A Glutaredoxin-4; redox-a 48.5 64 0.0022 22.3 6.8 55 109-163 35-95 (135)
191 2lpm_A Two-component response 48.1 37 0.0013 23.1 5.1 72 127-201 48-121 (123)
192 2va8_A SSO2462, SKI2-type heli 46.9 11 0.00037 34.1 2.8 45 56-100 252-332 (715)
193 4fn4_A Short chain dehydrogena 46.9 98 0.0034 23.9 8.8 59 108-166 31-92 (254)
194 3iwh_A Rhodanese-like domain p 46.4 17 0.00057 23.9 3.0 36 53-88 53-88 (103)
195 2oca_A DAR protein, ATP-depend 45.3 17 0.00058 31.1 3.7 69 107-182 156-231 (510)
196 1urh_A 3-mercaptopyruvate sulf 44.8 30 0.001 27.0 4.8 36 107-142 85-122 (280)
197 3hjh_A Transcription-repair-co 44.3 27 0.00094 30.0 4.8 65 108-184 382-446 (483)
198 3mwy_W Chromo domain-containin 44.1 28 0.00097 31.9 5.2 62 35-100 555-616 (800)
199 2p6r_A Afuhel308 helicase; pro 43.5 12 0.00042 33.7 2.6 46 55-100 241-316 (702)
200 3tg1_B Dual specificity protei 43.0 16 0.00054 26.0 2.7 35 108-142 93-136 (158)
201 1t1v_A SH3BGRL3, SH3 domain-bi 42.8 47 0.0016 20.8 4.8 34 122-155 22-55 (93)
202 2h54_A Caspase-1; allosteric s 42.6 96 0.0033 22.6 9.5 107 108-222 43-173 (178)
203 3olh_A MST, 3-mercaptopyruvate 41.6 22 0.00075 28.4 3.6 38 107-144 253-291 (302)
204 2xgj_A ATP-dependent RNA helic 40.6 14 0.00049 35.0 2.7 27 56-82 343-369 (1010)
205 3i42_A Response regulator rece 40.4 73 0.0025 20.6 5.8 79 122-203 37-123 (127)
206 2zj8_A DNA helicase, putative 40.2 8.8 0.0003 34.7 1.1 45 56-100 237-314 (720)
207 1rhs_A Sulfur-substituted rhod 39.8 37 0.0013 26.8 4.7 38 106-143 238-276 (296)
208 3h11_A CAsp8 and FADD-like apo 39.7 32 0.0011 27.2 4.2 49 108-157 43-91 (272)
209 2ql9_A Caspase-7; cysteine pro 39.5 1.1E+02 0.0037 22.3 7.4 107 108-222 44-170 (173)
210 2eg4_A Probable thiosulfate su 39.3 16 0.00056 27.7 2.4 37 107-143 183-219 (230)
211 2wem_A Glutaredoxin-related pr 38.7 87 0.003 21.0 7.5 46 108-153 19-71 (118)
212 2nn3_C Caspase-1; cysteine pro 38.6 82 0.0028 25.3 6.5 107 108-222 60-185 (310)
213 3l9o_A ATP-dependent RNA helic 38.5 1.2E+02 0.004 29.1 8.6 49 106-165 225-273 (1108)
214 1z63_A Helicase of the SNF2/RA 37.7 24 0.00082 30.0 3.4 46 55-100 340-386 (500)
215 3qmx_A Glutaredoxin A, glutare 37.7 79 0.0027 20.2 7.2 47 108-154 15-62 (99)
216 1qtn_A Caspase-8; apoptosis, d 37.6 1.1E+02 0.0038 21.9 6.8 98 118-223 54-158 (164)
217 1v5x_A PRA isomerase, phosphor 37.1 75 0.0026 23.7 5.8 40 108-149 53-92 (203)
218 3h11_B Caspase-8; cell death, 36.7 1E+02 0.0034 24.2 6.7 108 107-222 16-151 (271)
219 3gx8_A Monothiol glutaredoxin- 36.1 96 0.0033 20.7 7.3 47 108-154 15-70 (121)
220 3gk5_A Uncharacterized rhodane 34.9 31 0.0011 22.5 3.0 37 54-90 53-89 (108)
221 2wlr_A Putative thiosulfate su 34.7 35 0.0012 28.6 4.0 39 106-144 201-240 (423)
222 4f67_A UPF0176 protein LPG2838 34.7 19 0.00064 28.4 2.1 38 106-143 179-217 (265)
223 3aay_A Putative thiosulfate su 34.6 42 0.0014 26.0 4.2 36 107-142 225-262 (277)
224 3grc_A Sensor protein, kinase; 34.5 98 0.0033 20.3 7.8 80 122-201 40-126 (140)
225 1f1j_A Caspase-7 protease; cas 34.3 1E+02 0.0036 24.6 6.5 109 108-224 69-197 (305)
226 2b4a_A BH3024; flavodoxin-like 34.1 99 0.0034 20.3 9.2 77 123-201 50-130 (138)
227 3hzu_A Thiosulfate sulfurtrans 33.8 54 0.0018 26.2 4.8 36 107-142 110-147 (318)
228 1qle_D Cytochrome AA3, ccytoch 33.8 18 0.00063 19.8 1.3 19 138-156 4-22 (43)
229 2rdm_A Response regulator rece 33.5 97 0.0033 20.0 6.6 74 125-203 42-124 (132)
230 1e0c_A Rhodanese, sulfurtransf 33.5 25 0.00085 27.3 2.7 36 107-142 222-258 (271)
231 2lci_A Protein OR36; structura 33.3 98 0.0034 20.0 9.5 93 69-166 15-109 (134)
232 2qv0_A Protein MRKE; structura 33.2 65 0.0022 21.4 4.6 76 123-201 46-126 (143)
233 2wlr_A Putative thiosulfate su 32.5 54 0.0018 27.4 4.7 36 107-142 357-393 (423)
234 3i2v_A Adenylyltransferase and 32.2 19 0.00065 24.1 1.6 36 109-144 73-115 (127)
235 2yvq_A Carbamoyl-phosphate syn 32.0 90 0.0031 21.7 5.2 45 123-168 58-106 (143)
236 1e0c_A Rhodanese, sulfurtransf 31.1 54 0.0018 25.3 4.3 37 107-143 80-118 (271)
237 3klo_A Transcriptional regulat 31.1 1.5E+02 0.0053 21.6 7.3 79 122-203 44-130 (225)
238 2kpo_A Rossmann 2X2 fold prote 30.7 1E+02 0.0034 19.3 7.7 50 106-156 49-98 (110)
239 1rif_A DAR protein, DNA helica 30.2 40 0.0014 26.2 3.4 53 107-166 156-212 (282)
240 1nsj_A PRAI, phosphoribosyl an 30.1 83 0.0028 23.5 5.0 39 108-148 54-92 (205)
241 3p45_A Caspase-6; protease, hu 28.5 1.7E+02 0.0059 21.3 9.7 109 108-226 44-174 (179)
242 3n53_A Response regulator rece 28.1 1.3E+02 0.0044 19.7 7.1 76 123-201 37-121 (140)
243 1uar_A Rhodanese; sulfurtransf 27.9 57 0.0019 25.4 3.9 36 107-142 78-115 (285)
244 3od5_A Caspase-6; caspase doma 27.8 2.2E+02 0.0075 22.3 9.6 107 108-222 21-147 (278)
245 1okg_A Possible 3-mercaptopyru 27.5 94 0.0032 25.5 5.3 38 107-144 94-133 (373)
246 2ouc_A Dual specificity protei 27.4 36 0.0012 23.0 2.4 35 108-142 83-126 (142)
247 3ilh_A Two component response 27.2 1.2E+02 0.0043 19.8 5.3 71 131-203 59-140 (146)
248 1fov_A Glutaredoxin 3, GRX3; a 26.9 1E+02 0.0035 18.1 6.2 53 111-163 3-56 (82)
249 2fsx_A RV0390, COG0607: rhodan 26.9 62 0.0021 22.4 3.6 37 54-90 78-115 (148)
250 4g81_D Putative hexonate dehyd 26.3 2.2E+02 0.0076 21.9 7.4 59 108-166 33-94 (255)
251 2khp_A Glutaredoxin; thioredox 25.5 1.2E+02 0.0041 18.5 7.4 54 110-163 7-61 (92)
252 3sir_A Caspase; hydrolase; 2.6 25.2 1.6E+02 0.0054 22.8 6.0 48 109-157 21-81 (259)
253 3aay_A Putative thiosulfate su 25.2 81 0.0028 24.3 4.3 37 107-143 76-114 (277)
254 3ucx_A Short chain dehydrogena 24.8 2.3E+02 0.0078 21.4 9.1 81 58-166 13-96 (264)
255 3h11_A CAsp8 and FADD-like apo 24.5 80 0.0027 24.8 4.1 46 55-100 42-87 (272)
256 3cg4_A Response regulator rece 23.7 1.6E+02 0.0054 19.2 8.4 79 123-201 42-126 (142)
257 1rhs_A Sulfur-substituted rhod 23.6 1.1E+02 0.0037 24.0 4.8 36 107-142 91-130 (296)
258 3mwd_B ATP-citrate synthase; A 23.4 1.1E+02 0.0037 24.9 4.8 50 109-158 81-131 (334)
259 3h11_B Caspase-8; cell death, 23.3 1.1E+02 0.0039 23.8 4.8 36 67-102 49-84 (271)
260 3ntd_A FAD-dependent pyridine 23.2 46 0.0016 28.8 2.8 37 107-143 523-559 (565)
261 1yt8_A Thiosulfate sulfurtrans 22.8 63 0.0022 28.0 3.5 36 107-142 321-357 (539)
262 2dko_A Caspase-3; low barrier 22.2 1.7E+02 0.0056 20.5 5.1 33 68-100 42-74 (146)
263 3a10_A Response regulator; pho 22.1 1.5E+02 0.0052 18.4 8.4 74 126-199 39-114 (116)
264 3llm_A ATP-dependent RNA helic 21.8 83 0.0028 23.6 3.7 23 55-78 207-229 (235)
265 3gbv_A Putative LACI-family tr 21.5 2.5E+02 0.0084 21.3 6.6 32 59-90 72-104 (304)
266 1t3k_A Arath CDC25, dual-speci 21.3 84 0.0029 21.9 3.4 38 107-144 84-131 (152)
267 2qh8_A Uncharacterized protein 20.9 2.5E+02 0.0084 21.6 6.5 30 111-140 45-77 (302)
268 3h75_A Periplasmic sugar-bindi 20.9 2.4E+02 0.0082 22.1 6.5 83 59-156 65-169 (350)
269 3sju_A Keto reductase; short-c 20.6 2.9E+02 0.0099 21.1 8.9 80 58-165 26-108 (279)
270 3o74_A Fructose transport syst 20.5 2.7E+02 0.0091 20.7 7.6 33 59-91 61-93 (272)
271 3h7a_A Short chain dehydrogena 20.5 2.7E+02 0.0094 20.8 9.6 80 58-165 9-90 (252)
272 3nhm_A Response regulator; pro 20.4 1.8E+02 0.0061 18.6 6.2 76 123-201 38-121 (133)
273 3gaf_A 7-alpha-hydroxysteroid 20.3 2.8E+02 0.0095 20.8 8.2 59 108-166 36-97 (256)
274 3heb_A Response regulator rece 20.3 1.8E+02 0.006 19.4 5.0 17 185-201 118-134 (152)
275 3sir_A Caspase; hydrolase; 2.6 20.3 1.9E+02 0.0065 22.4 5.5 36 67-102 44-79 (259)
276 4dad_A Putative pilus assembly 20.1 2E+02 0.0067 18.9 6.9 72 131-202 66-141 (146)
277 3hjh_A Transcription-repair-co 20.0 4.1E+02 0.014 22.6 8.7 89 108-196 39-145 (483)
No 1
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.98 E-value=4.1e-32 Score=210.59 Aligned_cols=155 Identities=35% Similarity=0.622 Sum_probs=126.8
Q ss_pred HHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCC
Q psy15610 3 AKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYP 82 (237)
Q Consensus 3 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~ 82 (237)
..+||.+|+.|.+...+....+|.|.++.+++.+|+..|.++|...
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---------------------------------- 53 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---------------------------------- 53 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS----------------------------------
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC----------------------------------
Confidence 3679999999999877788899999999999999999999999865
Q ss_pred ceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEE
Q psy15610 83 VTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL 162 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 162 (237)
+.++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|..+||
T Consensus 54 -------------------------~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 108 (191)
T 2p6n_A 54 -------------------------PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVL 108 (191)
T ss_dssp -------------------------CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEE
T ss_pred -------------------------CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 163 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 163 v~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++|+.+.+
T Consensus 109 vaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~ 162 (191)
T 2p6n_A 109 VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKAC 162 (191)
T ss_dssp EECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTS
T ss_pred EEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCch
Confidence 999999999999999999999999999999999999999999999999998764
No 2
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=4.7e-30 Score=194.15 Aligned_cols=145 Identities=41% Similarity=0.599 Sum_probs=133.2
Q ss_pred ccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHH
Q psy15610 18 VGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97 (237)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (237)
++....+|.|.|+.+++.+|+..|.++|....
T Consensus 3 ~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~------------------------------------------------ 34 (163)
T 2hjv_A 3 AGLTTRNIEHAVIQVREENKFSLLKDVLMTEN------------------------------------------------ 34 (163)
T ss_dssp ---CCCCEEEEEEECCGGGHHHHHHHHHHHHC------------------------------------------------
T ss_pred cccCcccceEEEEECChHHHHHHHHHHHHhcC------------------------------------------------
Confidence 34567789999999999999999999997642
Q ss_pred HhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC
Q psy15610 98 AQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV 177 (237)
Q Consensus 98 ~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~ 177 (237)
..++||||++...++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++
T Consensus 35 ----------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 ----------PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENI 104 (163)
T ss_dssp ----------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCC
T ss_pred ----------CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCC
Q psy15610 178 KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 178 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~ 220 (237)
++||++++|+++..|.||+||+||.|++|.+++|+.+.+...+
T Consensus 105 ~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 105 SLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFL 147 (163)
T ss_dssp SEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHH
T ss_pred CEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHH
Confidence 9999999999999999999999999999999999987765443
No 3
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=9e-30 Score=194.27 Aligned_cols=138 Identities=28% Similarity=0.499 Sum_probs=128.7
Q ss_pred CCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 21 TSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 21 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+..+|.|+|+.+++.+|+..|.+++....
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~--------------------------------------------------- 30 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLE--------------------------------------------------- 30 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSC---------------------------------------------------
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCC---------------------------------------------------
Confidence 35689999999999999999999997652
Q ss_pred hhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEE
Q psy15610 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHV 180 (237)
Q Consensus 101 ~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~V 180 (237)
..++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++|
T Consensus 31 -------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~V 103 (172)
T 1t5i_A 31 -------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 103 (172)
T ss_dssp -------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEE
T ss_pred -------CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 181 INFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 181 i~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|++++|+++..|.||+||+||.|+.|.+++|+.+.+
T Consensus 104 i~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 104 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp EESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred EEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 999999999999999999999999999999998753
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=192.49 Aligned_cols=144 Identities=33% Similarity=0.539 Sum_probs=129.4
Q ss_pred CCCCCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 20 STSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 20 ~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
.+..+|.|+|+.++..+ |+..|.+++....
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~------------------------------------------------- 33 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSIT------------------------------------------------- 33 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSC-------------------------------------------------
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCC-------------------------------------------------
Confidence 45678999999999766 9999999998652
Q ss_pred hhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCc
Q psy15610 99 QQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVK 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~ 178 (237)
..++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|.++
T Consensus 34 ---------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~ 104 (175)
T 2rb4_A 34 ---------IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVT 104 (175)
T ss_dssp ---------CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEE
T ss_pred ---------CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC------CCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 179 HVINFDLP------SDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 179 ~Vi~~~~p------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
+||+++.| .+...|+||+||+||.|+.|.+++|+.+.+...+.
T Consensus 105 ~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 153 (175)
T 2rb4_A 105 IVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 153 (175)
T ss_dssp EEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHH
T ss_pred EEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHH
Confidence 99999999 89999999999999999999999999887754443
No 5
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=196.13 Aligned_cols=150 Identities=68% Similarity=1.009 Sum_probs=121.6
Q ss_pred eeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhH
Q psy15610 16 GRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKER 95 (237)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (237)
..+.....+|.|.|+.+++.+|+..|.++|....
T Consensus 11 ~~~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~---------------------------------------------- 44 (185)
T 2jgn_A 11 YFQGSTSENITQKVVWVEESDKRSFLLDLLNATG---------------------------------------------- 44 (185)
T ss_dssp -----CCTTEEEEEEECCGGGHHHHHHHHHHHC-----------------------------------------------
T ss_pred cccCCCCCCceEEEEEeCcHHHHHHHHHHHHhcC----------------------------------------------
Confidence 3455678899999999999999999999997652
Q ss_pred HHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC
Q psy15610 96 EEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP 175 (237)
Q Consensus 96 ~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~ 175 (237)
++.++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 45 -----------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 113 (185)
T 2jgn_A 45 -----------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDIS 113 (185)
T ss_dssp -----------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCC
T ss_pred -----------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcc
Confidence 147899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCC
Q psy15610 176 HVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 176 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 222 (237)
++++||++++|+++..|.||+||+||.|+.|.+++|+.+.+...+..
T Consensus 114 ~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 114 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 160 (185)
T ss_dssp SBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHH
T ss_pred cCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHH
Confidence 99999999999999999999999999999999999999887665544
No 6
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=3.1e-29 Score=190.00 Aligned_cols=141 Identities=36% Similarity=0.633 Sum_probs=125.5
Q ss_pred CCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhh
Q psy15610 23 ENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQY 101 (237)
Q Consensus 23 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (237)
.+|+|+|+.+++.+ |+..|.+++....
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~---------------------------------------------------- 29 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSIS---------------------------------------------------- 29 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTT----------------------------------------------------
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCC----------------------------------------------------
Confidence 47899999999887 9999999998652
Q ss_pred hhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEE
Q psy15610 102 TLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI 181 (237)
Q Consensus 102 ~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi 181 (237)
..++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 30 ------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi 103 (165)
T 1fuk_A 30 ------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 103 (165)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 182 NFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 182 ~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
++++|+++..|.||+||+||.|+.|.+++|+.+.+...+.
T Consensus 104 ~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 143 (165)
T 1fuk_A 104 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 143 (165)
T ss_dssp ESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHH
T ss_pred EeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHH
Confidence 9999999999999999999999999999999987754443
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=1.1e-28 Score=213.92 Aligned_cols=176 Identities=47% Similarity=0.785 Sum_probs=156.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+++.|+.+|..+.+........++.+.+..+.+.+|...|.+++...
T Consensus 253 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--------------------------------- 299 (434)
T 2db3_A 253 MAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ--------------------------------- 299 (434)
T ss_dssp HHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC---------------------------------
T ss_pred HHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC---------------------------------
Confidence 57788999999988777777889999999999999999999888765
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+++..++.+++.|...++.+..+||++++.+|+.+++.|++|..+|
T Consensus 300 --------------------------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 353 (434)
T 2db3_A 300 --------------------------ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353 (434)
T ss_dssp --------------------------CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSE
T ss_pred --------------------------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 245999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCC-----CCCCCCCCCCCccC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGG-----SSSQNSNAPDWWND 236 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 236 (237)
||||+++++|+|+|++++||+|++|.+...|+||+||+||.|+.|.+++|+.+.+...+.. ........|+|+.+
T Consensus 354 LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999765433322 33356678888764
No 8
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=6.2e-28 Score=190.08 Aligned_cols=136 Identities=38% Similarity=0.545 Sum_probs=125.5
Q ss_pred CceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhh
Q psy15610 24 NITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTL 103 (237)
Q Consensus 24 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (237)
.+.+.++.++..+|+..|.+++....
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~------------------------------------------------------ 30 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVAS------------------------------------------------------ 30 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHC------------------------------------------------------
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCC------------------------------------------------------
Confidence 35677888888999999999997543
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
+.++||||+++..++.+++.|...++.+..+||+|++.+|.++++.|++|..+|||||+++++|+|+|++++||++
T Consensus 31 ----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 31 ----PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp ----CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEES
T ss_pred ----CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEEC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
++|+++..|.||+||+||.|++|.+++|+++.+.
T Consensus 107 ~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~ 140 (212)
T 3eaq_A 107 RLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRER 140 (212)
T ss_dssp SCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGH
T ss_pred CCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHH
Confidence 9999999999999999999999999999988763
No 9
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-27 Score=195.66 Aligned_cols=136 Identities=37% Similarity=0.540 Sum_probs=124.4
Q ss_pred CceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhh
Q psy15610 24 NITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTL 103 (237)
Q Consensus 24 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (237)
.+.|+++.++.++|+..|.+++....
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~------------------------------------------------------ 27 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS------------------------------------------------------ 27 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC------------------------------------------------------
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC------------------------------------------------------
Confidence 47899999999999999999997653
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
+.++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||++
T Consensus 28 ----~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~ 103 (300)
T 3i32_A 28 ----PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY 103 (300)
T ss_dssp ----CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEES
T ss_pred ----CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+.|+++..|.||+||+||.|++|.|++|+++.+.
T Consensus 104 d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~ 137 (300)
T 3i32_A 104 RMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRER 137 (300)
T ss_dssp SCCSSTTHHHHHHTCCC-----CEEEEEECSSTH
T ss_pred CCCCCHHHHHHHccCcCcCCCCceEEEEeChHHH
Confidence 9999999999999999999999999999998763
No 10
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.91 E-value=2.2e-29 Score=191.73 Aligned_cols=145 Identities=35% Similarity=0.579 Sum_probs=133.9
Q ss_pred CCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhh
Q psy15610 23 ENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQY 101 (237)
Q Consensus 23 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (237)
.+|.|.|+.++. .+|+..|.+++....
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~---------------------------------------------------- 29 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPE---------------------------------------------------- 29 (170)
Confidence 368889998888 889999999987642
Q ss_pred hhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEE
Q psy15610 102 TLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI 181 (237)
Q Consensus 102 ~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi 181 (237)
+.++||||++...++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 30 ------~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi 103 (170)
T 2yjt_D 30 ------ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVF 103 (170)
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC
Q psy15610 182 NFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 182 ~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
++++|+++..|.||+||+||.|+.|.+++|+.+.+...+.....
T Consensus 104 ~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 104 NFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 99999999999999999999999999999999888777666544
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=195.44 Aligned_cols=176 Identities=66% Similarity=1.034 Sum_probs=149.6
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+++.++.+|..+.+........++.+.+..++..+|...+.+++....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~-------------------------------- 274 (417)
T 2i4i_A 227 LARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATG-------------------------------- 274 (417)
T ss_dssp HHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCC--------------------------------
T ss_pred HHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcC--------------------------------
Confidence 456788889888877666778889999999999899999998887652
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
.+.++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|..+|
T Consensus 275 -------------------------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 275 -------------------------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp -------------------------TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred -------------------------CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 1478999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC----CCCCCCCCc
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS----QNSNAPDWW 234 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 234 (237)
||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++|+.+.+........+ +....++|+
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999877665544322 344455554
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.93 E-value=6.1e-26 Score=194.87 Aligned_cols=158 Identities=35% Similarity=0.589 Sum_probs=143.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+++.++.+|..+.+........++.+.+..++..+ |...+.+++....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~------------------------------- 275 (410)
T 2j0s_A 227 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT------------------------------- 275 (410)
T ss_dssp TGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcC-------------------------------
Confidence 46678889988877766677888999888887655 8888888776542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||++.+.++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 276 ---------------------------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (410)
T 2j0s_A 276 ---------------------------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 328 (410)
T ss_dssp ---------------------------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred ---------------------------CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 46899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
|||||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++|+.+.+.
T Consensus 329 vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 329 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 999999999999999999999999999999999999999999999999999987764
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.93 E-value=1.1e-24 Score=185.55 Aligned_cols=157 Identities=25% Similarity=0.458 Sum_probs=139.6
Q ss_pred hHHHHhhcceeEEEeecc-CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVG-STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
++..++.+|..+.+.... .....+.+.+..+...+|...+.+++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------------------------------- 249 (391)
T 1xti_A 201 VCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLE------------------------------- 249 (391)
T ss_dssp HHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSC-------------------------------
T ss_pred HHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcC-------------------------------
Confidence 356777888777665443 455678888888888888888888776542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||++.+.++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 250 ---------------------------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 302 (391)
T 1xti_A 250 ---------------------------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302 (391)
T ss_dssp ---------------------------CSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred ---------------------------CCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc
Confidence 57999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|++|.+++|+.+.+
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999998754
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=9.3e-25 Score=186.83 Aligned_cols=158 Identities=30% Similarity=0.475 Sum_probs=136.9
Q ss_pred HHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCC
Q psy15610 3 AKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYP 82 (237)
Q Consensus 3 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~ 82 (237)
...++.+|..+.+. ......++.+++..++...|...+..++....
T Consensus 212 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~--------------------------------- 257 (400)
T 1s2m_A 212 MVKHLHKPYEINLM-EELTLKGITQYYAFVEERQKLHCLNTLFSKLQ--------------------------------- 257 (400)
T ss_dssp HHHHCSSCEEESCC-SSCBCTTEEEEEEECCGGGHHHHHHHHHHHSC---------------------------------
T ss_pred HHHHcCCCeEEEec-cccccCCceeEEEEechhhHHHHHHHHHhhcC---------------------------------
Confidence 34556666666543 33455677777777777778877777776542
Q ss_pred ceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEE
Q psy15610 83 VTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL 162 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 162 (237)
..++||||++.+.++.+++.|...++.+..+||++++.+|..+++.|++|..+||
T Consensus 258 -------------------------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (400)
T 1s2m_A 258 -------------------------INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312 (400)
T ss_dssp -------------------------CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred -------------------------CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Confidence 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCC
Q psy15610 163 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGS 219 (237)
Q Consensus 163 v~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 219 (237)
|||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.|++|+.+.+...
T Consensus 313 v~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp EESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred EEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 999999999999999999999999999999999999999999999999999876543
No 15
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=190.91 Aligned_cols=162 Identities=33% Similarity=0.564 Sum_probs=130.3
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+++.++.+|..+.+.........+.+.+..++..+ |...+.+++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 279 (414)
T 3eiq_A 231 VTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT------------------------------- 279 (414)
T ss_dssp HHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSC-------------------------------
T ss_pred HHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCC-------------------------------
Confidence 35677888888877766777888888888877654 8888888887653
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 280 ---------------------------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 332 (414)
T 3eiq_A 280 ---------------------------ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 332 (414)
T ss_dssp ---------------------------CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---
T ss_pred ---------------------------CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc
Confidence 46899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
|||||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++|+.+.+...+.
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 393 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLR 393 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHH
T ss_pred EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987654433
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=1.9e-24 Score=185.20 Aligned_cols=157 Identities=32% Similarity=0.508 Sum_probs=140.1
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+++.++.+|..+.+..+......+.+.+..+.. ..|...+.+++....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 265 (412)
T 3fht_A 217 FAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT------------------------------- 265 (412)
T ss_dssp HHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHS-------------------------------
T ss_pred HHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcC-------------------------------
Confidence 466788888888877777778888888877765 457788887776542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 266 ---------------------------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 318 (412)
T 3fht_A 266 ---------------------------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318 (412)
T ss_dssp ---------------------------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred ---------------------------CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc
Confidence 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCC------CHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|||||+++++|+|+|++++||+++.|+ +...|.||+||+||.|+.|.+++|+.+.+
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 999999999999999999999999994 67899999999999999999999998654
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=3.8e-24 Score=182.15 Aligned_cols=157 Identities=34% Similarity=0.527 Sum_probs=136.9
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+++.++.++..+.+.........+.+.+..+.. ..|...+..++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 242 (395)
T 3pey_A 194 YAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMT------------------------------- 242 (395)
T ss_dssp HHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTT-------------------------------
T ss_pred HHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhcc-------------------------------
Confidence 345666777777766566667777777776654 457777777766542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 243 ---------------------------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 295 (395)
T 3pey_A 243 ---------------------------IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK 295 (395)
T ss_dssp ---------------------------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred ---------------------------CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC
Confidence 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCC------CHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|||||+++++|+|+|++++||+++.|+ ++..|.||+||+||.|+.|.+++|+...+
T Consensus 296 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 296 VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 999999999999999999999999998 99999999999999999999999998644
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=7.1e-24 Score=178.80 Aligned_cols=152 Identities=36% Similarity=0.587 Sum_probs=132.4
Q ss_pred HHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCC
Q psy15610 3 AKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYP 82 (237)
Q Consensus 3 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~ 82 (237)
++.++.++..+.. ....++.+.+..+...+|...+.+++...
T Consensus 196 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------------------------- 237 (367)
T 1hv8_A 196 AKKYMGDYSFIKA----KINANIEQSYVEVNENERFEALCRLLKNK---------------------------------- 237 (367)
T ss_dssp HHHHCCSEEEEEC----CSSSSSEEEEEECCGGGHHHHHHHHHCST----------------------------------
T ss_pred HHHHcCCCeEEEe----cCCCCceEEEEEeChHHHHHHHHHHHhcC----------------------------------
Confidence 3455555555532 22346777777777777888777777643
Q ss_pred ceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEE
Q psy15610 83 VTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL 162 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 162 (237)
+.++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|..+||
T Consensus 238 -------------------------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 292 (367)
T 1hv8_A 238 -------------------------EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292 (367)
T ss_dssp -------------------------TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEE
T ss_pred -------------------------CCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 163 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 163 v~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
|||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++.+.+.
T Consensus 293 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp EECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred EECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHH
Confidence 9999999999999999999999999999999999999999999999999987654
No 19
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.90 E-value=1.5e-23 Score=187.74 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=129.4
Q ss_pred cccceeEEeecccc--hhhHHHHhhhcCCCce-----------ee-cCCcc-hhhHHHHhhhhhhccCCceEEEEeeccc
Q psy15610 55 DEALTLVFVETKKG--ADQLEDFLHHHGYPVT-----------SI-HGDRT-QKEREEAQQYTLISCDEALTLVFVETKK 119 (237)
Q Consensus 55 ~~~~~i~f~~t~~~--~~~~~~~l~~~~~~~~-----------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~iIF~~t~~ 119 (237)
++.+++++++|... .+++..++........ .+ ..... ......+........++.++||||+|++
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~ 278 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQK 278 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHH
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHH
Confidence 46789999999877 3566666644321110 00 01000 1111111112212235789999999999
Q ss_pred chHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhccc
Q psy15610 120 GADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRT 199 (237)
Q Consensus 120 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~ 199 (237)
.++.+++.|...++.+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||++++|.|.+.|+|++||+
T Consensus 279 ~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRa 358 (591)
T 2v1x_A 279 DSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358 (591)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceEEeecCCCC
Q psy15610 200 GRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 200 ~R~g~~~~~~~~~~~~~~ 217 (237)
||.|.+|.|++|+.+.+.
T Consensus 359 GR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 359 GRDDMKADCILYYGFGDI 376 (591)
T ss_dssp CTTSSCEEEEEEECHHHH
T ss_pred CcCCCCceEEEEEChHHH
Confidence 999999999999986654
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.90 E-value=1.1e-23 Score=186.51 Aligned_cols=111 Identities=22% Similarity=0.449 Sum_probs=106.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
.+.++||||+|++.++.+++.|...++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p 314 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIP 314 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 187 SDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 187 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+|.+.|+||+||+||.|.+|.+++|+.+.+.
T Consensus 315 ~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 315 RNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp SSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred CCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 9999999999999999999999999976543
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=2.6e-25 Score=194.90 Aligned_cols=157 Identities=32% Similarity=0.508 Sum_probs=12.4
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+++.++.+|..+.+..+......+.+.++.+.. ..|...|..++....
T Consensus 284 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 332 (479)
T 3fmp_B 284 FAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT------------------------------- 332 (479)
T ss_dssp HHHHHSSSEEEEEEC-----------------------------------------------------------------
T ss_pred HHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhcc-------------------------------
Confidence 567888899988887777777888888877765 457777777666542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+
T Consensus 333 ---------------------------~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~ 385 (479)
T 3fmp_B 333 ---------------------------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc
Confidence 46899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCC------CHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|||||+++++|+|+|++++||++++|. +...|+||+||+||.|..|.+++|+.+.+
T Consensus 386 iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 999999999999999999999999995 56899999999999999999999998776
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.90 E-value=4.6e-23 Score=184.02 Aligned_cols=116 Identities=32% Similarity=0.505 Sum_probs=109.1
Q ss_pred cCCceEEEEeecccchHHHHHHHhhC---CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN 182 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~ 182 (237)
..+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 56779999999999999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 183 FDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 183 ~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
+++|.++..|+||+||+||.|..|.+++|+.+.+...+.
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~ 455 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 455 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHH
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHH
Confidence 999999999999999999999999999999987654443
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.90 E-value=4.2e-25 Score=188.30 Aligned_cols=118 Identities=33% Similarity=0.623 Sum_probs=0.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS 187 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~ 187 (237)
..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||++++|+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~ 338 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC
Q psy15610 188 DVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 188 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
++..|.||+||+||.|++|.+++|+.+.+...+.....
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp --------------------------------------
T ss_pred CHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999888766655444
No 24
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.89 E-value=1.3e-22 Score=181.73 Aligned_cols=111 Identities=33% Similarity=0.551 Sum_probs=106.2
Q ss_pred CceEEEEeecccchHHHHHHHhhC---CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
+.++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 367 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcC
Confidence 578999999999999999999876 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 185 LPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 185 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
+|.++..|+||+||+||.|+.|.+++|+.+.+..
T Consensus 368 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 368 VPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CCCCHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 9999999999999999999999999999987643
No 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.88 E-value=3.3e-23 Score=182.93 Aligned_cols=158 Identities=27% Similarity=0.483 Sum_probs=111.6
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEee-chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVD-EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+++.++.++..+.+.........+.+.+..+. ...|...+..++....
T Consensus 308 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~------------------------------- 356 (508)
T 3fho_A 308 YAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLT------------------------------- 356 (508)
T ss_dssp HHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC----------------------------------
T ss_pred HHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcC-------------------------------
Confidence 34566677777766555566666777776654 3457777777766542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.++..|...+..+..+||+++..+|..+++.|++|..+
T Consensus 357 ---------------------------~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~ 409 (508)
T 3fho_A 357 ---------------------------IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK 409 (508)
T ss_dssp ---------------------------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC
T ss_pred ---------------------------CCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCC------CCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
|||||+++++|+|+|++++||+++.| .++..|+||+||+||.|+.|.+++|+.+.+.
T Consensus 410 VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~ 472 (508)
T 3fho_A 410 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS 472 (508)
T ss_dssp CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTS
T ss_pred EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHH
Confidence 99999999999999999999999999 7899999999999999999999999986543
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.6e-21 Score=162.61 Aligned_cols=104 Identities=40% Similarity=0.691 Sum_probs=99.3
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
..+.++||||++.+.++.+++.|. .+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||++++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC
Confidence 346789999999999999999886 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 186 PSDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
|+|+..|.||+||+||.|++|.+++|+.
T Consensus 294 ~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 294 PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 9999999999999999999999999998
No 27
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.85 E-value=1.1e-21 Score=159.68 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=85.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCHHHHHHHHHHhhcC-CCC-EEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRFRSG-ETP-ILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
.+.++||||++...++.++..|... |+.+..+||+++..+|..+++.|+++ ... +|++|+++++|+|++.+++||+|
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 190 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEEC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEE
Confidence 4689999999999999999999885 99999999999999999999999998 666 78899999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceE--EeecCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPF--SYNQPG 215 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~--~~~~~~ 215 (237)
|+||++..|.|++||++|.|+.+.+. .|+..+
T Consensus 191 d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 191 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp SCCSCTTTC--------------CCEEEEEEETT
T ss_pred CCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999887764 444443
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=1.8e-21 Score=169.25 Aligned_cols=109 Identities=28% Similarity=0.401 Sum_probs=102.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeC--------CCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHG--------DRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKH 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~ 179 (237)
+.++||||+++..++.+++.|...++.+..+|| +|+..+|..+++.|++|..+|||||+++++|+|+|.+++
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~ 440 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDL 440 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCE
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCE
Confidence 689999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||++++|+++..|.||+||+||.|+ |.++.|+.++..
T Consensus 441 Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 441 VVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp EEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred EEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999998 999999987653
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.84 E-value=2.9e-21 Score=166.17 Aligned_cols=99 Identities=25% Similarity=0.482 Sum_probs=92.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceE-EEeCCCCHHHHHHHHHHhhcCCCCEEEE----cCccccccCCCC-CcEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVT-SIHGDRTQKEREEALRRFRSGETPILVA----TAVAARGLDIPH-VKHVI 181 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gvdl~~-~~~Vi 181 (237)
+.++||||+++..++.++..|...++.+. .+||. +|. ++.|++|..+|||| |+++++|+|+|+ +++||
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 47899999999999999999999999998 89984 444 99999999999999 999999999999 99999
Q ss_pred EecCC--CCHHHHHHhhcccccCC----CCCceEEee
Q psy15610 182 NFDLP--SDVEEYVHRIGRTGRMG----NLDFPFSYN 212 (237)
Q Consensus 182 ~~~~p--~s~~~~~Q~~GR~~R~g----~~~~~~~~~ 212 (237)
+++.| .++..|+||+||+||.| ..|.+++|+
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999 99999999999999988 478899888
No 30
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.84 E-value=3.1e-21 Score=171.38 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=57.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhC------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCCEEEEcCccccccC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEALRRFRS-GETPILVATAVAARGLD 173 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gvd 173 (237)
++.++||||+++..++.+++.|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|+|
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiD 468 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCC
Confidence 3689999999999999999999775 5566677889999999999999999 99999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 174 IPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 174 l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
+|++++||+||+|+|+..|+||+|| ||. .+|.+++|+..++
T Consensus 469 ip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp ----CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 9999999999999999999999999 999 7899999987654
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.3e-20 Score=174.64 Aligned_cols=109 Identities=21% Similarity=0.233 Sum_probs=99.9
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC---------------------------------------ceEEEeCCCCHHHH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY---------------------------------------PVTSIHGDRTQKER 147 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~r 147 (237)
+..++||||+++..|+.++..|...++ .+..+||+|++.+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 456899999999999999999876433 27899999999999
Q ss_pred HHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE----ecC----CCCHHHHHHhhcccccCCC--CCceEEeecCC
Q psy15610 148 EEALRRFRSGETPILVATAVAARGLDIPHVKHVIN----FDL----PSDVEEYVHRIGRTGRMGN--LDFPFSYNQPG 215 (237)
Q Consensus 148 ~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~~----p~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~ 215 (237)
+.+++.|++|.++|||||+++++|+|+|.+++||+ ||. |.++..|.||+||+||.|. .|.|++++.+.
T Consensus 422 ~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 422 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 99999999999999999999999999999999999 998 8899999999999999996 59999999865
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.83 E-value=1.3e-20 Score=172.57 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=120.7
Q ss_pred ccceeEEeecccchhhHHHHhhhc-------CCCce--eecCC-------c--c----hh---hHHHHhhhhhhccCCce
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHH-------GYPVT--SIHGD-------R--T----QK---EREEAQQYTLISCDEAL 110 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~-------~~~~~--~~~~~-------~--~----~~---~~~~~~~~~~~~~~~~~ 110 (237)
+.++|++|+|..+.+++++|+... .++.. ..... . . .. .........-...++.+
T Consensus 175 ~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (715)
T 2va8_A 175 RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQ 254 (715)
T ss_dssp TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCC
T ss_pred cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCC
Confidence 578999999999999999999743 12211 00000 0 0 00 00001111111235789
Q ss_pred EEEEeecccchHHHHHHHhhCC------------------------------------CceEEEeCCCCHHHHHHHHHHh
Q psy15610 111 TLVFVETKKGADQLEDFLHHHG------------------------------------YPVTSIHGDRTQKEREEALRRF 154 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~~------------------------------------~~~~~~h~~~~~~~r~~~~~~f 154 (237)
+||||++++.++.++..|.... ..+..+||++++++|..+++.|
T Consensus 255 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f 334 (715)
T 2va8_A 255 VLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGF 334 (715)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999987531 2489999999999999999999
Q ss_pred hcCCCCEEEEcCccccccCCCCCcEEEE----ec-------CCCCHHHHHHhhcccccCC--CCCceEEeecCCC
Q psy15610 155 RSGETPILVATAVAARGLDIPHVKHVIN----FD-------LPSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGY 216 (237)
Q Consensus 155 ~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~-------~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~ 216 (237)
++|..+|||||+++++|+|+|++++||+ |+ .|.|...|.||+|||||.| ..|.|+.++...+
T Consensus 335 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 335 RQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999999999999999999998 88 7899999999999999988 4788999987665
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.83 E-value=7e-21 Score=172.87 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=99.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC--------CCcE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP--------HVKH 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~--------~~~~ 179 (237)
+.++||||+|.+.++.++..|...|+++.++||++.+.+|..+..+++.| .|+|||+++++|+|++ +..+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~ 509 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLA 509 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcE
Confidence 57899999999999999999999999999999999888887666666654 6999999999999999 7889
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||+++.|.|...|.||+||+||.|.+|.+++|++..+.
T Consensus 510 VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 510 VVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999999999999999999999999999999998774
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.1e-20 Score=175.37 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=95.3
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCc---------------------------------------eEEEeCCCCHHH
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYP---------------------------------------VTSIHGDRTQKE 146 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~---------------------------------------~~~~h~~~~~~~ 146 (237)
.+..++||||+++..|+.++..|...++. +..+||+|++.+
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~ 518 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 518 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHH
Confidence 45679999999999999999988653222 799999999999
Q ss_pred HHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC--------CCCHHHHHHhhcccccCC--CCCceEEeecCCC
Q psy15610 147 REEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL--------PSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGY 216 (237)
Q Consensus 147 r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~--------p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~ 216 (237)
|+.+++.|++|.++|||||+++++|+|+|++++||+++. |.|+..|+||+||+||.| ..|.|++++.+..
T Consensus 519 R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 519 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp HHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred HHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 999999999999999999999999999999999997654 347888999999999999 6788888887663
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.83 E-value=2.6e-20 Score=170.74 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=123.1
Q ss_pred ccceeEEeecccchhhHHHHhhhcC-------CCcee--e-cC-----Cc----chhhHHHHhhhhhhccCCceEEEEee
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHG-------YPVTS--I-HG-----DR----TQKEREEAQQYTLISCDEALTLVFVE 116 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~-------~~~~~--~-~~-----~~----~~~~~~~~~~~~~~~~~~~~~iIF~~ 116 (237)
+.++|++|+|..+.+++++|+...- .+... . .. .. .......+ .-...++.++||||+
T Consensus 169 ~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~LVF~~ 245 (720)
T 2zj8_A 169 KAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELV---YDAIRKKKGALIFVN 245 (720)
T ss_dssp TBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHH---HHHHHTTCCEEEECS
T ss_pred CCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHH---HHHHhCCCCEEEEec
Confidence 6789999999999999999996421 11110 0 00 00 00000000 111235689999999
Q ss_pred cccchHHHHHHHhhC---------------------------------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 117 TKKGADQLEDFLHHH---------------------------------GYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 117 t~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
+++.++.++..|... ...+..+||++++++|..+++.|++|.++|||
T Consensus 246 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlv 325 (720)
T 2zj8_A 246 MRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVV 325 (720)
T ss_dssp CHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEE
T ss_pred CHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 999999998888642 12489999999999999999999999999999
Q ss_pred EcCccccccCCCCCcEEEE----ec----CCCCHHHHHHhhcccccCC--CCCceEEeecCCC
Q psy15610 164 ATAVAARGLDIPHVKHVIN----FD----LPSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGY 216 (237)
Q Consensus 164 ~T~~~~~Gvdl~~~~~Vi~----~~----~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~ 216 (237)
||+++++|+|+|.+++||+ |+ .|.+...|.||+|||||.| ..|.|++++...+
T Consensus 326 aT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 326 ATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp ECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred ECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999998 66 5889999999999999988 4688999988766
No 36
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.83 E-value=9e-21 Score=164.49 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=114.5
Q ss_pred EEEeechhHH--------HHHHHhhcCchhhhcccccceeEEeecccc-hhhHHHHhhhcCCCceeecCCcchhhHHHHh
Q psy15610 29 IAWVDEQDKR--------SCLLDLLSSPSQEELGDEALTLVFVETKKG-ADQLEDFLHHHGYPVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 29 ~~~~~~~~k~--------~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (237)
+++++|.+++ ..+..++. ..+.++++||+|... ...+... ..+...+............
T Consensus 102 ~vViDEah~~~~~~~~~~~~~~~~~~-------~~~~~~l~~SAT~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~- 169 (440)
T 1yks_A 102 VIIMDEAHFLDPASIAARGWAAHRAR-------ANESATILMTATPPGTSDEFPHS----NGEIEDVQTDIPSEPWNTG- 169 (440)
T ss_dssp EEEETTTTCCSHHHHHHHHHHHHHHH-------TTSCEEEEECSSCTTCCCSSCCC----SSCEEEEECCCCSSCCSSS-
T ss_pred EEEEECccccCcchHHHHHHHHHHhc-------cCCceEEEEeCCCCchhhhhhhc----CCCeeEeeeccChHHHHHH-
Confidence 5677887775 22222221 246789999999854 3322221 1122121111111100000
Q ss_pred hhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcE
Q psy15610 100 QYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKH 179 (237)
Q Consensus 100 ~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~ 179 (237)
.......+.+++|||++++.++.+++.|...++++..+|| ++|..+++.|++|..+|||||+++++|+|+| +++
T Consensus 170 -~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~ 243 (440)
T 1yks_A 170 -HDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VER 243 (440)
T ss_dssp -CHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSE
T ss_pred -HHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceE
Confidence 1112223679999999999999999999999999999999 4688999999999999999999999999999 999
Q ss_pred EEE-------------------ecCCCCHHHHHHhhcccccC-CCCCceEEeec
Q psy15610 180 VIN-------------------FDLPSDVEEYVHRIGRTGRM-GNLDFPFSYNQ 213 (237)
Q Consensus 180 Vi~-------------------~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~~ 213 (237)
||+ ++.|.+..+|+||+||+||. |..|.|++|+.
T Consensus 244 VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 244 VLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 886 88899999999999999997 68999999974
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.82 E-value=1.8e-20 Score=163.10 Aligned_cols=173 Identities=17% Similarity=0.263 Sum_probs=122.1
Q ss_pred EEEeechhHHH----HHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhh
Q psy15610 29 IAWVDEQDKRS----CLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLI 104 (237)
Q Consensus 29 ~~~~~~~~k~~----~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (237)
+++++|.+.+. .+..++.. ....++.++++||+|...-. ...+. .+.............. ........
T Consensus 113 ~iViDEah~~~~~~~~~~~~~~~---~~~~~~~~~i~~SAT~~~~~--~~~~~-~~~~~~~~~~~~p~~~--~~~~~~~l 184 (451)
T 2jlq_A 113 LIVMDEAHFTDPCSVAARGYIST---RVEMGEAAAIFMTATPPGST--DPFPQ-SNSPIEDIEREIPERS--WNTGFDWI 184 (451)
T ss_dssp EEEEETTTCCSHHHHHHHHHHHH---HHHTTSCEEEEECSSCTTCC--CSSCC-CSSCEEEEECCCCSSC--CSSSCHHH
T ss_pred EEEEeCCccCCcchHHHHHHHHH---hhcCCCceEEEEccCCCccc--hhhhc-CCCceEecCccCCchh--hHHHHHHH
Confidence 66778877642 22222211 11245688999999986511 11111 1111111111111000 00001122
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
.....++||||++++.++.+++.|...++.+..+|+++. .++++.|++|..+|||||+++++|+|+|+ ++||+++
T Consensus 185 ~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 185 TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred HhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECC
Confidence 233668999999999999999999999999999999764 57889999999999999999999999999 9999988
Q ss_pred --------------------CCCCHHHHHHhhcccccCCC-CCceEEeecC
Q psy15610 185 --------------------LPSDVEEYVHRIGRTGRMGN-LDFPFSYNQP 214 (237)
Q Consensus 185 --------------------~p~s~~~~~Q~~GR~~R~g~-~~~~~~~~~~ 214 (237)
.|.+...|+||+||+||.|. .|.+++|...
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 7888888643
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=172.33 Aligned_cols=106 Identities=28% Similarity=0.456 Sum_probs=90.6
Q ss_pred CceEEEEeecccchHHHHHHHhhC------CCceEEEeCC--------CCHHHHHHHHHHhhcCCCCEEEEcCccccccC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH------GYPVTSIHGD--------RTQKEREEALRRFRSGETPILVATAVAARGLD 173 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~------~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvd 173 (237)
+.++||||+++..++.++++|... |+.+..+||+ |++.+|..+++.|++|.++|||||+++++|+|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 589999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 174 IPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 174 l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
+|++++||+||+|+|+..|+||+|||||.| +.++++....
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999987665 3344443433
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=6.7e-21 Score=169.00 Aligned_cols=108 Identities=29% Similarity=0.423 Sum_probs=77.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhC------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCCEEEEcCccccccC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEALRRFRS-GETPILVATAVAARGLD 173 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gvd 173 (237)
+..++||||+++..++.++..|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|+|
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGID 467 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCc
Confidence 3589999999999999999999875 3355666779999999999999999 99999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 174 IPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 174 l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
+|++++||+||+|+|+..|+||+|| ||. ..|.++.|+.+++
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSAD 508 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCC
Confidence 9999999999999999999999999 888 7899999987654
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.82 E-value=3.1e-20 Score=169.86 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=124.6
Q ss_pred ccccceeEEeecccchhhHHHHhhhcC-------CCcee--ecCCc---chh---------hHHHHhhhhhhccCCceEE
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHG-------YPVTS--IHGDR---TQK---------EREEAQQYTLISCDEALTL 112 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~-------~~~~~--~~~~~---~~~---------~~~~~~~~~~~~~~~~~~i 112 (237)
.++.++|++|+|..+.+++++|+...- ++... ..... ... ....+. -...++.++|
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L 246 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVE---ECVAENGGVL 246 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHH---HHHHTTCCEE
T ss_pred CcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHH---HHHhcCCCEE
Confidence 456889999999999999999996431 11111 00000 000 111111 1123578999
Q ss_pred EEeecccchHHHHHHHhhC------------------------------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEE
Q psy15610 113 VFVETKKGADQLEDFLHHH------------------------------GYPVTSIHGDRTQKEREEALRRFRSGETPIL 162 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 162 (237)
|||++++.++.++..|... +..+..+||++++++|..+++.|++|.++||
T Consensus 247 VF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl 326 (702)
T 2p6r_A 247 VFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVV 326 (702)
T ss_dssp EECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEE
T ss_pred EEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEE
Confidence 9999999999998888642 1358899999999999999999999999999
Q ss_pred EEcCccccccCCCCCcEEEE----ec---CCCCHHHHHHhhcccccCC--CCCceEEeecCCC
Q psy15610 163 VATAVAARGLDIPHVKHVIN----FD---LPSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGY 216 (237)
Q Consensus 163 v~T~~~~~Gvdl~~~~~Vi~----~~---~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~ 216 (237)
|||+++++|+|+|++++||+ || .|.+...|.||+|||||.| ..|.|+.++...+
T Consensus 327 vaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 327 VATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp EECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred EECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999998 66 6889999999999999988 5788999988765
No 41
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.81 E-value=1e-20 Score=165.00 Aligned_cols=173 Identities=17% Similarity=0.272 Sum_probs=122.0
Q ss_pred EEEeechhHH----HHHHHhhcCchhhhcccccceeEEeecccch-hhHHHHhhhcCCCceeecCCcchhhHHHHhhhhh
Q psy15610 29 IAWVDEQDKR----SCLLDLLSSPSQEELGDEALTLVFVETKKGA-DQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTL 103 (237)
Q Consensus 29 ~~~~~~~~k~----~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (237)
+++++|.+.+ ......+... ...++.++++||+|.... ..+. ....+...+.......... ....+
T Consensus 115 ~iViDEaH~~~~~~~~~~~~~~~~---~~~~~~~~il~SAT~~~~~~~~~----~~~~pi~~~~~~~~~~~~~--~~~~~ 185 (459)
T 2z83_A 115 LFVMDEAHFTDPASIAARGYIATK---VELGEAAAIFMTATPPGTTDPFP----DSNAPIHDLQDEIPDRAWS--SGYEW 185 (459)
T ss_dssp EEEESSTTCCSHHHHHHHHHHHHH---HHTTSCEEEEECSSCTTCCCSSC----CCSSCEEEEECCCCSSCCS--SCCHH
T ss_pred EEEEECCccCCchhhHHHHHHHHH---hccCCccEEEEEcCCCcchhhhc----cCCCCeEEecccCCcchhH--HHHHH
Confidence 6678887763 1122222211 113567899999998752 1111 1122222221111110000 00112
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE-
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN- 182 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~- 182 (237)
......++||||+++..++.+++.|...++.+..+||+ +|..+++.|++|..+|||||+++++|+|+|+ ++||+
T Consensus 186 l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 186 ITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp HHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEEC
T ss_pred HHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEEC
Confidence 22236799999999999999999999999999999995 6888899999999999999999999999999 99998
Q ss_pred -------------------ecCCCCHHHHHHhhcccccCCC-CCceEEeecCC
Q psy15610 183 -------------------FDLPSDVEEYVHRIGRTGRMGN-LDFPFSYNQPG 215 (237)
Q Consensus 183 -------------------~~~p~s~~~~~Q~~GR~~R~g~-~~~~~~~~~~~ 215 (237)
|+.|.|...|+||+||+||.|. +|.+++|+.+.
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6799999999999999999997 89999999876
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.81 E-value=6.2e-20 Score=168.78 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=125.1
Q ss_pred cccceeEEeecccchhhHHHHhhhcC--------CCceeecCCc-chhhHHHHhh---hhhhccCCceEEEEeecccchH
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHG--------YPVTSIHGDR-TQKEREEAQQ---YTLISCDEALTLVFVETKKGAD 122 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~--------~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~iIF~~t~~~~~ 122 (237)
++.+++++|+|. +.+.+++++.... +++....... .......... ........+++||||+++..++
T Consensus 239 ~~~~iIl~SAT~-~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 239 PDLKIIIMSATL-DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp TTCEEEEEESCS-CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred CCceEEEEeccc-cHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 467899999999 5678888885321 2222211111 1111111111 1112335789999999999999
Q ss_pred HHHHHHhh-----------CCCceEEEeCCCCHHHHHHHHHHhh-----cCCCCEEEEcCccccccCCCCCcEEEEecC-
Q psy15610 123 QLEDFLHH-----------HGYPVTSIHGDRTQKEREEALRRFR-----SGETPILVATAVAARGLDIPHVKHVINFDL- 185 (237)
Q Consensus 123 ~l~~~L~~-----------~~~~~~~~h~~~~~~~r~~~~~~f~-----~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~- 185 (237)
.+++.|.. .++.+..+||++++++|.++++.|. +|..+|||||+++++|+|+|++++||+++.
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 99999874 5778999999999999999999999 999999999999999999999999999776
Q ss_pred -----------------CCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 186 -----------------PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 186 -----------------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|.|...|.||+||+||. .+|.|+.|++..+
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 88999999999999999 7999999997554
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.81 E-value=2.9e-20 Score=172.24 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=62.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhC------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCCEEEEcCccccccC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEALRRFRS-GETPILVATAVAARGLD 173 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gvd 173 (237)
++.++||||+++..++.++++|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|+|
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GID 709 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCC
Confidence 3689999999999999999999763 5567778999999999999999999 99999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 174 IPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 174 l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
+|++++||+||+|+|+..|+||+|| ||. .+|.++.|+..++
T Consensus 710 lp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 710 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp -CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 9999999999999999999999999 999 7899999987653
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=3.1e-20 Score=168.10 Aligned_cols=171 Identities=17% Similarity=0.293 Sum_probs=123.2
Q ss_pred EEEeechhHHHH----HHHhhcCchhhhcccccceeEEeecccc-hhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhh
Q psy15610 29 IAWVDEQDKRSC----LLDLLSSPSQEELGDEALTLVFVETKKG-ADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTL 103 (237)
Q Consensus 29 ~~~~~~~~k~~~----l~~ll~~~~~~~~~~~~~~i~f~~t~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (237)
+++++|.+++.. ....+.... .....++++||+|... +.++.. ...+...+............ ...
T Consensus 335 lvViDEaH~~~~~~~~~~~~l~~~~---~~~~~~vl~~SAT~~~~i~~~~~----~~~~i~~v~~~~~~~~~~~~--l~~ 405 (673)
T 2wv9_A 335 LFVMDEAHFTDPASIAARGYIATRV---EAGEAAAIFMTATPPGTSDPFPD----TNSPVHDVSSEIPDRAWSSG--FEW 405 (673)
T ss_dssp EEEEESTTCCCHHHHHHHHHHHHHH---HTTSCEEEEECSSCTTCCCSSCC----CSSCEEEEECCCCSSCCSSC--CHH
T ss_pred EEEEeCCcccCccHHHHHHHHHHhc---cccCCcEEEEcCCCChhhhhhcc----cCCceEEEeeecCHHHHHHH--HHH
Confidence 667888776511 112221111 1246789999999864 222111 12222222211111100001 112
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE-
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN- 182 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~- 182 (237)
....+.++||||++++.++.+++.|...++.+..+||+ +|.++++.|++|..+|||||+++++|+|+| +++||+
T Consensus 406 l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 406 ITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp HHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred HHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEEC
Confidence 22357899999999999999999999999999999994 799999999999999999999999999999 999997
Q ss_pred -------------------ecCCCCHHHHHHhhcccccC-CCCCceEEeec
Q psy15610 183 -------------------FDLPSDVEEYVHRIGRTGRM-GNLDFPFSYNQ 213 (237)
Q Consensus 183 -------------------~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~~ 213 (237)
++.|.+..+|+||+||+||. |+.|.|++|+.
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 56899999999999999998 78999999974
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=4.3e-20 Score=181.00 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=135.3
Q ss_pred cccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhh---------------HH-----HHhhhhhhccCCceEE
Q psy15610 53 LGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE---------------RE-----EAQQYTLISCDEALTL 112 (237)
Q Consensus 53 ~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~i 112 (237)
.+.+.++|.+|+|..+++++++||.........+....+..+ +. ..........+..++|
T Consensus 1080 ~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 1159 (1724)
T 4f92_B 1080 IERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI 1159 (1724)
T ss_dssp TSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEE
T ss_pred cCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCee
Confidence 456789999999999999999999877655544443332211 10 1111222345678999
Q ss_pred EEeecccchHHHHHHHhhC----------------------------------CCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 113 VFVETKKGADQLEDFLHHH----------------------------------GYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~----------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
|||+|+..|+.++..|... ...++++||+|++.+|..+++.|++|.
T Consensus 1160 VF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~ 1239 (1724)
T 4f92_B 1160 VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGA 1239 (1724)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred eeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCC
Confidence 9999999998887655311 235899999999999999999999999
Q ss_pred CCEEEEcCccccccCCCCCcEEEE----ec------CCCCHHHHHHhhcccccCCC--CCceEEeecCCCCCCCCCCCCC
Q psy15610 159 TPILVATAVAARGLDIPHVKHVIN----FD------LPSDVEEYVHRIGRTGRMGN--LDFPFSYNQPGYGGSYGGSSSQ 226 (237)
Q Consensus 159 ~~vlv~T~~~~~Gvdl~~~~~Vi~----~~------~p~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~~~~~~~~~~~~ 226 (237)
++|||||+.+++|+|+|...+||. |+ .|.+..+|.||+|||||.|. .|.+++++.+.+...|......
T Consensus 1240 i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1240 IQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp BCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred CeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC
Confidence 999999999999999999998883 32 35689999999999999885 6899999998887777665443
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=6.5e-20 Score=179.77 Aligned_cols=179 Identities=16% Similarity=0.193 Sum_probs=134.2
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCC-CceeecC---------------Ccchhh-----HHHHhhhhhhccCCceEE
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHG---------------DRTQKE-----REEAQQYTLISCDEALTL 112 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~-~~~~~~~---------------~~~~~~-----~~~~~~~~~~~~~~~~~i 112 (237)
+.+.++|.+|+|.++++++++||..... .+..+.. ...... .............++++|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5667899999999999999999975310 0111111 010000 111111223344567899
Q ss_pred EEeecccchHHHHHHHhhC-------------------------------------CCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 113 VFVETKKGADQLEDFLHHH-------------------------------------GYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
|||+|++.|+.++..|.+. ...++++||+|++++|..+++.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999888777421 234899999999999999999999
Q ss_pred cCCCCEEEEcCccccccCCCCCcEEEE----ecC------CCCHHHHHHhhcccccCC--CCCceEEeecCCCCCCCCCC
Q psy15610 156 SGETPILVATAVAARGLDIPHVKHVIN----FDL------PSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 156 ~g~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~~------p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~ 223 (237)
+|.++|||||+.+++|+|+|..++||. |++ |.++.+|.||+|||||.| ..|.+++++...+...|...
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 999999999999999999999999985 443 458999999999999976 56999999999998888776
Q ss_pred CCCCCCCCC
Q psy15610 224 SSQNSNAPD 232 (237)
Q Consensus 224 ~~~~~~~~~ 232 (237)
.......++
T Consensus 482 l~~~~pieS 490 (1724)
T 4f92_B 482 LNQQLPIES 490 (1724)
T ss_dssp TTTCSCCCC
T ss_pred HcCCCcchh
Confidence 555444433
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.81 E-value=4.9e-20 Score=165.65 Aligned_cols=148 Identities=18% Similarity=0.300 Sum_probs=112.7
Q ss_pred cccceeEEeecccch-hhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCC
Q psy15610 55 DEALTLVFVETKKGA-DQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGY 133 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~ 133 (237)
.+.++++||+|.... ..+.. .+.....+............ .........++||||+|++.++.+++.|...++
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l--l~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~ 380 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ----SNSPIEDIEREIPERSWNTG--FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGK 380 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC----CSSCEEEEECCCCSSCCSSS--CHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTC
T ss_pred cCccEEEEECCCchhhhhhhc----cCCceeeecccCCHHHHHHH--HHHHHhCCCCEEEEECChhHHHHHHHHHHHcCC
Confidence 467899999998653 22211 22222222211111000000 111222467999999999999999999999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEE--------------------EEecCCCCHHHHH
Q psy15610 134 PVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHV--------------------INFDLPSDVEEYV 193 (237)
Q Consensus 134 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~V--------------------i~~~~p~s~~~~~ 193 (237)
.+..+||+ +|.++++.|++|..+|||||+++++|+|+| +++| |+++.|.+.+.|+
T Consensus 381 ~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yi 455 (618)
T 2whx_A 381 RVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAA 455 (618)
T ss_dssp CEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred cEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHH
Confidence 99999984 688899999999999999999999999997 8887 7788899999999
Q ss_pred HhhcccccCCC-CCceEEeec
Q psy15610 194 HRIGRTGRMGN-LDFPFSYNQ 213 (237)
Q Consensus 194 Q~~GR~~R~g~-~~~~~~~~~ 213 (237)
||+||+||.|. +|.+++|+.
T Consensus 456 QR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 456 QRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp HHHTTSSCCTTCCCEEEEECS
T ss_pred HhccccCCCCCCCCeEEEEcc
Confidence 99999999974 899999997
No 48
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=2.4e-19 Score=160.15 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=97.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC--------CCcE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP--------HVKH 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~--------~~~~ 179 (237)
+.++||||+|...++.++..|...|+++.++||+....++..+..+++.| .|+|||+++++|+|++ ...+
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Gglh 551 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLC 551 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCE
Confidence 57899999999999999999999999999999996655555556666655 6999999999999998 5569
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||+++.|.+...|.|+.||+||.|.+|.+++|++..+.
T Consensus 552 VInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 552 IIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp EEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred EEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999999999999999999999999999999998773
No 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.80 E-value=6.5e-20 Score=172.50 Aligned_cols=109 Identities=24% Similarity=0.327 Sum_probs=102.1
Q ss_pred CCceEEEEeecccchHHHHHHHhh-CCCceEEEeCCCCHHHHHHHHHHhhcCC--CCEEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKEREEALRRFRSGE--TPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
++.++||||++...++.++..|.. .|+++..+||+|++.+|+++++.|++|+ ++|||||+++++|+|+|.+++||++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~ 581 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMF 581 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEe
Confidence 368999999999999999999985 5999999999999999999999999998 9999999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
++|+++..|.|++||+||.|+.+.++++....
T Consensus 582 d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~ 613 (968)
T 3dmq_A 582 DLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYL 613 (968)
T ss_dssp SCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEE
T ss_pred cCCCCHHHHHHHhhccccCCCCceEEEEEecC
Confidence 99999999999999999999999877775443
No 50
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.80 E-value=5e-19 Score=160.46 Aligned_cols=109 Identities=28% Similarity=0.363 Sum_probs=103.4
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC-
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL- 185 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~- 185 (237)
.+.++||||+|...++.++++|...|+.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 186 ----PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 186 ----p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|.+...|+||+||+||.| +|.+++|+++..
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 889999999999999995 899999987654
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.80 E-value=8e-20 Score=171.52 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=63.4
Q ss_pred CCceEEEEeecccchHHHHHHHhhC------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCCEEEEcCccccccC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEALRRFRS-GETPILVATAVAARGLD 173 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gvd 173 (237)
++.++||||+++..++.++++|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|+|
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGID 709 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCc
Confidence 3689999999999999999999875 5566777999999999999999999 99999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 174 IPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 174 l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
+|++++||+||+|+|+..|+||+|| ||. ..|.+++|+..+
T Consensus 710 lp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 710 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 9999999999999999999999999 998 688899888764
No 52
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.80 E-value=2.5e-20 Score=170.10 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=67.3
Q ss_pred CceEEEEeecccchHHHHHHHhhCC----CceEEE--------eCCCCHHHHHHHHHHhhc-CCCCEEEEcCccccccCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHG----YPVTSI--------HGDRTQKEREEALRRFRS-GETPILVATAVAARGLDI 174 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~----~~~~~~--------h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gvdl 174 (237)
+.++||||+++..++.+++.|...+ +.+..+ ||+|++.+|..+++.|++ |..+|||||+++++|+|+
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDi 477 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 477 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcC
Confidence 5789999999999999999999887 788877 569999999999999998 999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 175 PHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 175 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|++++||+||+|+++..|+||+|| ||. +.|.+++++..++
T Consensus 478 p~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~ 517 (696)
T 2ykg_A 478 AQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG 517 (696)
T ss_dssp CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHH
T ss_pred ccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCC
Confidence 999999999999999999999999 998 6889998887654
No 53
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.79 E-value=6.5e-19 Score=159.64 Aligned_cols=109 Identities=29% Similarity=0.384 Sum_probs=103.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC-
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL- 185 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~- 185 (237)
.+.++||||+|...++.+++.|...|+++..+||++++.+|..+++.|++|.++|||+|+++++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 186 ----PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 186 ----p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|.+...|+||+||+||. .+|.+++|+.+.+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCC
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCC
Confidence 89999999999999998 6899999998754
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.79 E-value=2.6e-19 Score=154.96 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=118.5
Q ss_pred EEEeechhHHH----HHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhh
Q psy15610 29 IAWVDEQDKRS----CLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLI 104 (237)
Q Consensus 29 ~~~~~~~~k~~----~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (237)
+++++|.+++. .....+.... ...+.++++||+|..... ..+.....+...+............ ..+.
T Consensus 96 ~vViDEaH~~~~~~~~~~~~l~~~~---~~~~~~~l~~SAT~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l 167 (431)
T 2v6i_A 96 LYIMDEAHFLDPASVAARGYIETRV---SMGDAGAIFMTATPPGTT---EAFPPSNSPIIDEETRIPDKAWNSG--YEWI 167 (431)
T ss_dssp EEEEESTTCCSHHHHHHHHHHHHHH---HTTSCEEEEEESSCTTCC---CSSCCCSSCCEEEECCCCSSCCSSC--CHHH
T ss_pred EEEEeCCccCCccHHHHHHHHHHHh---hCCCCcEEEEeCCCCcch---hhhcCCCCceeeccccCCHHHHHHH--HHHH
Confidence 66778877652 2222222221 235678999999987621 1111112222222111111100001 1122
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcE-----
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKH----- 179 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~----- 179 (237)
...+.+++|||++++.++.+++.|...++.+..+||+ +|..+++.|++|..+|||||+++++|+|+| +.+
T Consensus 168 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 168 TEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp HSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECC
T ss_pred HcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecC
Confidence 2346789999999999999999999999999999997 578899999999999999999999999999 544
Q ss_pred ------------EEEecCCCCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 180 ------------VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 180 ------------Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
||+++.|.+..+|+||+||+||.|..+.+++++.
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788899999999999999999985444444443
No 55
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.78 E-value=6.5e-19 Score=159.77 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=101.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC----------
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV---------- 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~---------- 177 (237)
+.++||||.|...++.++..|...|+++.++||++...++..+..+|+.| .|+|||++++||+|++..
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~ 518 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAAL 518 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHC
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhc
Confidence 57899999999999999999999999999999999888888888889887 699999999999999974
Q ss_pred ---------------------------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 ---------------------------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 ---------------------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
.+||+++.|.|...|.|+.||+||.|.+|.+++|++..+.
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 519 ENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred ccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5899999999999999999999999999999999998764
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.78 E-value=5.7e-19 Score=159.68 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=125.5
Q ss_pred EEEEeechhHH------HHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhh
Q psy15610 28 RIAWVDEQDKR------SCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQY 101 (237)
Q Consensus 28 ~~~~~~~~~k~------~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (237)
.+++++|.+.+ ..+...+.... ....+++.+++|.+.++.+...... .+.+................ .
T Consensus 241 ~lvVIDEaH~l~d~~~g~~~~~~l~~l~----~~~i~il~~SAT~~~i~~l~~~~~~-~~~v~~~~r~~~l~~~~~~l-~ 314 (677)
T 3rc3_A 241 EVAVIDEIQMIRDPARGWAWTRALLGLC----AEEVHLCGEPAAIDLVMELMYTTGE-EVEVRDYKRLTPISVLDHAL-E 314 (677)
T ss_dssp EEEEECSGGGGGCTTTHHHHHHHHHHCC----EEEEEEEECGGGHHHHHHHHHHHTC-CEEEEECCCSSCEEECSSCC-C
T ss_pred CEEEEecceecCCccchHHHHHHHHccC----ccceEEEeccchHHHHHHHHHhcCC-ceEEEEeeecchHHHHHHHH-H
Confidence 46678887654 12222222211 2567788999997666666655421 11111110000000000000 0
Q ss_pred hhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc--CCCCEEEEcCccccccCCCCCcE
Q psy15610 102 TLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS--GETPILVATAVAARGLDIPHVKH 179 (237)
Q Consensus 102 ~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gvdl~~~~~ 179 (237)
.+... ....+|||++++.++.+++.|...++.+..+||+|++++|..+++.|++ |..+|||||+++++|+|+ ++++
T Consensus 315 ~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~ 392 (677)
T 3rc3_A 315 SLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRR 392 (677)
T ss_dssp SGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSE
T ss_pred HHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccE
Confidence 01111 3445899999999999999999999999999999999999999999999 889999999999999999 8999
Q ss_pred EEEecC--------------CCCHHHHHHhhcccccCCCC---CceEEeecC
Q psy15610 180 VINFDL--------------PSDVEEYVHRIGRTGRMGNL---DFPFSYNQP 214 (237)
Q Consensus 180 Vi~~~~--------------p~s~~~~~Q~~GR~~R~g~~---~~~~~~~~~ 214 (237)
||+++. |.+..+|.||+||+||.|.. |.|+.++..
T Consensus 393 VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 393 IIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp EEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred EEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999998 78999999999999999954 666666543
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.78 E-value=2.4e-18 Score=161.91 Aligned_cols=106 Identities=25% Similarity=0.338 Sum_probs=91.7
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC---------------------------------------ceEEEeCCCCHHH
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY---------------------------------------PVTSIHGDRTQKE 146 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~ 146 (237)
.+..++||||++++.|+.++..|...++ .+..+||+|++.+
T Consensus 334 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 334 RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 3457899999999999999999977554 5799999999999
Q ss_pred HHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC---------CHHHHHHhhcccccCC--CCCceEEee
Q psy15610 147 REEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS---------DVEEYVHRIGRTGRMG--NLDFPFSYN 212 (237)
Q Consensus 147 r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~---------s~~~~~Q~~GR~~R~g--~~~~~~~~~ 212 (237)
|+.+++.|++|.++|||||+++++|+|+|+ ..||+++.|. |+..|+||+|||||.| ..|.+++++
T Consensus 414 R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 414 KELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 999999999999999999999999999999 5555544443 9999999999999998 456666666
No 58
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.78 E-value=3.3e-19 Score=168.87 Aligned_cols=107 Identities=19% Similarity=0.336 Sum_probs=90.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEE----cCccccccCCCCC-cEEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVA----TAVAARGLDIPHV-KHVIN 182 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gvdl~~~-~~Vi~ 182 (237)
+.++||||+++..++.+++.|... +.+..+||++ ..+++.|++|..+|||| |+++++|+|+|++ ++||+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 468999999999999999999988 9999999998 37789999999999999 8999999999995 99999
Q ss_pred ecCC-----------------------------------------------------------------------CCHHH
Q psy15610 183 FDLP-----------------------------------------------------------------------SDVEE 191 (237)
Q Consensus 183 ~~~p-----------------------------------------------------------------------~s~~~ 191 (237)
++.| .+...
T Consensus 349 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1054)
T 1gku_B 349 VGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRT 428 (1054)
T ss_dssp ESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHH
T ss_pred eCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHH
Confidence 9999 78999
Q ss_pred HHHhhcccccCCCCC--ceEEeecCCCCCCC
Q psy15610 192 YVHRIGRTGRMGNLD--FPFSYNQPGYGGSY 220 (237)
Q Consensus 192 ~~Q~~GR~~R~g~~~--~~~~~~~~~~~~~~ 220 (237)
|+||+||+||.|..| .++.|+...+...+
T Consensus 429 yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~ 459 (1054)
T 1gku_B 429 YIQGSGRTSRLFAGGLTKGASFLLEDDSELL 459 (1054)
T ss_dssp HHHHHHTTCCEETTEECCEEEEEECSCHHHH
T ss_pred HhhhhchhhhccCCCCceEEEEEEecCHHHH
Confidence 999999999987664 47777776655433
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.76 E-value=4.1e-18 Score=162.50 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=102.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
.+.+++|||++.+.++.+++.|... +..+..+||+|++.+|+++++.|++|..+|||||+++++|+|+|++++||.++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 3689999999999999999999887 78999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 185 L-PSDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 185 ~-p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
. ++++..|.||+||+||.|+.|.|++++.+.
T Consensus 891 ~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 8 569999999999999999999999998764
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=3.1e-18 Score=155.02 Aligned_cols=105 Identities=16% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC---EEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP---ILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
.+.++||||++...++.++.+|...++.+..+||+++..+|..+++.|+++... +|++|+++++|+|++.+++||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 368999999999999999999999999999999999999999999999998754 88999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEe
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
|+||++..+.|++||++|.|+...+.++
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999999988765443
No 61
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=3.1e-18 Score=155.76 Aligned_cols=108 Identities=20% Similarity=0.167 Sum_probs=99.8
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC----------
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV---------- 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~---------- 177 (237)
+.++||||.|.+.++.++..|.+.|+++.++||++...++..+.++|+.| .|+|||++++||+|++..
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~ 537 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQR 537 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHH
Confidence 47899999999999999999999999999999998877777777888877 699999999999999975
Q ss_pred ------------------------------------------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 178 ------------------------------------------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 178 ------------------------------------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
.+||+++.|.|...|.|+.||+||.|.+|.+++|++..
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 538 LRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 48999999999999999999999999999999999987
Q ss_pred CC
Q psy15610 216 YG 217 (237)
Q Consensus 216 ~~ 217 (237)
+.
T Consensus 618 D~ 619 (922)
T 1nkt_A 618 DE 619 (922)
T ss_dssp SH
T ss_pred HH
Confidence 64
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.76 E-value=1.4e-18 Score=152.98 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=94.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCHHHHHHHHHHhhcC-CCC-EEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRFRSG-ETP-ILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
.+.++||||++...++.++..|... ++.+..+||+++..+|..+++.|+++ ... +|++|+++++|+|+|.+++||++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 4679999999999999999999875 89999999999999999999999998 454 78999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceE--EeecCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPF--SYNQPG 215 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~--~~~~~~ 215 (237)
++||++..|.|++||++|.|+.+.+. .|+..+
T Consensus 420 d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 420 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp SCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999887764 344443
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.76 E-value=3e-19 Score=156.10 Aligned_cols=108 Identities=21% Similarity=0.373 Sum_probs=94.3
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS 187 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~ 187 (237)
+.++||||++.+.++.+++.|. +..+||+++..+|+.+++.|++|..+|||||+++++|+|+|++++||+++.|+
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~ 423 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG 423 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS
T ss_pred CCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC
Confidence 6799999999999999999883 56799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhcccccCCCC-Cc--eEEeecCCCCCCC
Q psy15610 188 DVEEYVHRIGRTGRMGNL-DF--PFSYNQPGYGGSY 220 (237)
Q Consensus 188 s~~~~~Q~~GR~~R~g~~-~~--~~~~~~~~~~~~~ 220 (237)
++..|.|++||+||.|+. +. ++.|+..+..+.+
T Consensus 424 s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~ 459 (472)
T 2fwr_A 424 SAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVN 459 (472)
T ss_dssp CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---
T ss_pred CHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHH
Confidence 999999999999999854 33 4445665555444
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.76 E-value=8.3e-19 Score=157.39 Aligned_cols=104 Identities=26% Similarity=0.352 Sum_probs=93.4
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEE----
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI---- 181 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi---- 181 (237)
.+..++||||++++.++.+++.|.+.++.+..+||++++++ |.++..+|||||+++++|+|++ +++||
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 35789999999999999999999999999999999999875 4556669999999999999997 99988
Q ss_pred ------Eec-----------CCCCHHHHHHhhcccccCCCCCceEEeecCCCCCC
Q psy15610 182 ------NFD-----------LPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGS 219 (237)
Q Consensus 182 ------~~~-----------~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 219 (237)
+|| .|.+.+.|+||+||+|| |.+|. +.|+.+.+.+.
T Consensus 466 ~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 566 89999999999999999 88999 99998877665
No 65
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.75 E-value=1.7e-18 Score=164.29 Aligned_cols=74 Identities=26% Similarity=0.491 Sum_probs=69.7
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceE-EEeCCCCHHHHHHHHHHhhcCCCCEEEE----cCccccccCCCC-CcEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVT-SIHGDRTQKEREEALRRFRSGETPILVA----TAVAARGLDIPH-VKHVI 181 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gvdl~~-~~~Vi 181 (237)
+.++||||+++..++.++..|...++.+. .+|| +|.+ ++.|++|..+|||| |+++++|+|+|+ +++||
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 47899999999999999999999999998 9999 2555 99999999999999 999999999999 99999
Q ss_pred EecCCC
Q psy15610 182 NFDLPS 187 (237)
Q Consensus 182 ~~~~p~ 187 (237)
+||+|.
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999998
No 66
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.8e-18 Score=157.98 Aligned_cols=104 Identities=20% Similarity=0.372 Sum_probs=97.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
+.++||||.....++.++++|...|+++..+||+++..+|..+++.|+++.. .+|++|.+++.|+|++.+++||++|
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D 651 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFD 651 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESS
T ss_pred CCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEec
Confidence 6799999999999999999999999999999999999999999999998654 4899999999999999999999999
Q ss_pred CCCCHHHHHHhhcccccCCCCCceEEe
Q psy15610 185 LPSDVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 185 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
+|||+..+.|+.||++|.|+...+.++
T Consensus 652 ~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 652 SDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp CCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999988665443
No 67
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.74 E-value=1.8e-18 Score=152.48 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=95.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc-CccccccCCCCCcEEEEecCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT-AVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
+.+.+|||. .+.++.+++.|...+.++..+||+++..+|+.+++.|++|..+||||| +++++|+|+|++++||+++.|
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGV 426 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCC
T ss_pred CCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCC
Confidence 456667776 888889999999988899999999999999999999999999999999 999999999999999999999
Q ss_pred CCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 187 SDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 187 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
+++..|.|++||+||.|+.+.+++++.
T Consensus 427 ~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 427 KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999998874445544
No 68
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.73 E-value=3.4e-18 Score=156.80 Aligned_cols=109 Identities=20% Similarity=0.352 Sum_probs=96.9
Q ss_pred cCCceEEEEeeccc--------chHHHHHHHhh---CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCC
Q psy15610 106 CDEALTLVFVETKK--------GADQLEDFLHH---HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDI 174 (237)
Q Consensus 106 ~~~~~~iIF~~t~~--------~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl 174 (237)
..+.+++|||++.+ .++.+++.|.. .++.+..+||+|++.+|+.+++.|++|..+|||||+++++|+|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 45678999999664 46778888877 47889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCC-CHHHHHHhhcccccCCCCCceEEeecC
Q psy15610 175 PHVKHVINFDLPS-DVEEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 175 ~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
|++++||+++.|. +...+.||+||+||.|..|.|++++.+
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 9999999999996 789999999999999999999999873
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.68 E-value=1e-16 Score=143.84 Aligned_cols=98 Identities=24% Similarity=0.367 Sum_probs=87.2
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC--------ceEEEeCCCCHHHHHHHHHHhhcCCCC---EEEEcCccccccCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY--------PVTSIHGDRTQKEREEALRRFRSGETP---ILVATAVAARGLDI 174 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~--------~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gvdl 174 (237)
....++||||+++.+++.+++.|...+. .+..+||+++. +|+.+++.|+++..+ |++||+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 4468999999999999999999976543 26788998764 799999999998765 88999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHhhcccccCCC
Q psy15610 175 PHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204 (237)
Q Consensus 175 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 204 (237)
|.+++||++++|+|+..|.||+||+||.|.
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999874
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.25 E-value=2.6e-11 Score=114.22 Aligned_cols=106 Identities=10% Similarity=0.149 Sum_probs=85.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhCC------------CceE-EEeCC----------C----------CHH--------
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHG------------YPVT-SIHGD----------R----------TQK-------- 145 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~------------~~~~-~~h~~----------~----------~~~-------- 145 (237)
.+.+++|||+++..|..+++.|.+.+ ..+. ++|++ + ++.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 34689999999999999999987643 4454 45542 2 221
Q ss_pred ---------------------HHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCC
Q psy15610 146 ---------------------EREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204 (237)
Q Consensus 146 ---------------------~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 204 (237)
.|..+.++|++|.+++||+|+.+.+|+|+|.+ .++++|.|.+...|+|++||++|.+.
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 47788999999999999999999999999999 67889999999999999999999875
Q ss_pred C----CceEEeec
Q psy15610 205 L----DFPFSYNQ 213 (237)
Q Consensus 205 ~----~~~~~~~~ 213 (237)
. |.++.|+.
T Consensus 695 ~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 695 ATKTFGNIVTFRD 707 (1038)
T ss_dssp TTCCSEEEEESSC
T ss_pred CCCCcEEEEEccc
Confidence 3 44555553
No 71
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.71 E-value=3.1e-08 Score=81.36 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccC-----CCCCcEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLD-----IPHVKHVI 181 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvd-----l~~~~~Vi 181 (237)
.+.+++||++..+..+.+++++...++.+..+.|.....+ .+. .+....+.+.|..++-|+| +..++.||
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 3689999999999999999999999999999999855432 221 2344455566777777776 68899999
Q ss_pred EecCCCCHHHH-HHhhcccccCC--C--CCceEEeecCC
Q psy15610 182 NFDLPSDVEEY-VHRIGRTGRMG--N--LDFPFSYNQPG 215 (237)
Q Consensus 182 ~~~~p~s~~~~-~Q~~GR~~R~g--~--~~~~~~~~~~~ 215 (237)
.||+.|++..- +|++-|++|.| + .-.+|-++..+
T Consensus 199 ~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 199 CLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp ECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred EECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 99999999885 89999999984 3 33455555544
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.45 E-value=1.7e-06 Score=79.45 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=35.7
Q ss_pred EEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 179 HVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 179 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+||....+.|...--|-.||+||.|.+|...+|++-.+.
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 789999999999999999999999999999999987753
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.24 E-value=1.9e-06 Score=76.30 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=66.8
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE--EcCccccccCCCC----Cc
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILV--ATAVAARGLDIPH----VK 178 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv--~T~~~~~Gvdl~~----~~ 178 (237)
....+.++||++|...++.+.+.+.. .+ ...++.. .++..+++.|+++. .|++ +|+.+.+|+|+|+ +.
T Consensus 381 ~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 381 ENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp HTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEE
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccccc
Confidence 34567899999999999999988864 23 4555554 46888999998864 6776 7899999999997 78
Q ss_pred EEEEecCCC----CH--------------------------HHHHHhhcccccCCCCCceEEeecC
Q psy15610 179 HVINFDLPS----DV--------------------------EEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 179 ~Vi~~~~p~----s~--------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
+||.++.|. ++ ..+.|.+||+-|......++++++.
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 899998874 22 2356899999997655455555553
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.56 E-value=0.00021 Score=64.28 Aligned_cols=155 Identities=18% Similarity=0.159 Sum_probs=92.9
Q ss_pred ceeEEeecccchhhHHHHhhhc--------CCCc----eeecCCcchh--hH-----HHHhh--hhhhccCCceEEEEee
Q psy15610 58 LTLVFVETKKGADQLEDFLHHH--------GYPV----TSIHGDRTQK--ER-----EEAQQ--YTLISCDEALTLVFVE 116 (237)
Q Consensus 58 ~~i~f~~t~~~~~~~~~~l~~~--------~~~~----~~~~~~~~~~--~~-----~~~~~--~~~~~~~~~~~iIF~~ 116 (237)
.+|++|+|....+.+.+.++-. .|+. ..+...+... .+ ..... ..+....++.++||++
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~ 456 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFP 456 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEES
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4899999999988888877542 1111 1111111110 01 11111 1222233566999999
Q ss_pred cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc--CccccccCCCC--CcEEEEecCCC---CH
Q psy15610 117 TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT--AVAARGLDIPH--VKHVINFDLPS---DV 189 (237)
Q Consensus 117 t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T--~~~~~Gvdl~~--~~~Vi~~~~p~---s~ 189 (237)
|...++.+.+.+.. .... ..-+++..++..+++.|+ +.-.||+++ ..+.+|+|+|+ ...||....|. ++
T Consensus 457 Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p 532 (620)
T 4a15_A 457 SYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDA 532 (620)
T ss_dssp CHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCH
T ss_pred CHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCH
Confidence 99999999888862 2222 445566678999999999 888899997 49999999987 55788877653 11
Q ss_pred --------------------------HHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 190 --------------------------EEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 190 --------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
..+.|.+||+-|.-.+..++++++..-
T Consensus 533 ~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 533 INRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp HHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred HHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch
Confidence 123589999999877766677766543
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.19 E-value=0.018 Score=50.83 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=69.9
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc--CccccccCCC-----CC
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT--AVAARGLDIP-----HV 177 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T--~~~~~Gvdl~-----~~ 177 (237)
...++.++||.++...++.+.+. .+.++..-..+++. ...++.|+...-.||+++ ..+.+|+|+| .+
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l 463 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLI 463 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESE
T ss_pred HhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcce
Confidence 34467899999999998888863 34444433334554 446677754444799998 6999999999 36
Q ss_pred cEEEEecCCC---CH---------------------------HHHHHhhcccccCCCCCceEEeecC
Q psy15610 178 KHVINFDLPS---DV---------------------------EEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 178 ~~Vi~~~~p~---s~---------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
..||....|. ++ ..+.|.+||+-|..++..++++++.
T Consensus 464 ~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 464 SDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 7788766543 11 1234888999887666556666653
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.97 E-value=0.017 Score=53.28 Aligned_cols=76 Identities=20% Similarity=0.157 Sum_probs=63.1
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-cccccCCCCCcEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARGLDIPHVKHVI 181 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gvdl~~~~~Vi 181 (237)
.+.+++|.+||+.-+.++.+.+.+ .++++..+||+++..++....+.+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 357899999999988877766653 4789999999999999999999999999999999965 34456778888776
Q ss_pred E
Q psy15610 182 N 182 (237)
Q Consensus 182 ~ 182 (237)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 5
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.31 E-value=0.043 Score=46.29 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=62.9
Q ss_pred cCCceEEEEeecccchHHHHHHHhh---CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccc----cccCCCCCc
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHH---HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAA----RGLDIPHVK 178 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~----~Gvdl~~~~ 178 (237)
.++.+++|.+|++.-+.++.+.+.. .++.+..++|+.+..++....+.+.++..+|+|+|+..- .-+++..++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999988887 578999999999999998889999999999999995321 124555677
Q ss_pred EEEE
Q psy15610 179 HVIN 182 (237)
Q Consensus 179 ~Vi~ 182 (237)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.48 E-value=0.018 Score=42.18 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=46.9
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..++.-..... +|+||+++..++.+++.|...++.+..+|+.+.+..|.....
T Consensus 22 K~~~L~~ll~~~~~~~---------~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~ 79 (163)
T 2hjv_A 22 KFSLLKDVLMTENPDS---------CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMN 79 (163)
T ss_dssp HHHHHHHHHHHHCCSS---------EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCc---------EEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 4455545555555545 899999999999999999999999999999999988876643
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.34 E-value=0.019 Score=42.57 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=47.0
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+-+.+..+++-....+ +|+||+++..++.++..|...++.+..+|+.+.+..|.....
T Consensus 21 K~~~L~~ll~~~~~~~---------~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~ 78 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQ---------AIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQ 78 (175)
T ss_dssp HHHHHHHHHTTSCCSE---------EEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC---------EEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 3344555555555545 899999999999999999999999999999999998877644
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.25 E-value=0.018 Score=42.61 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=47.8
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..+++-....+ +|+||+++..++.+++.|...++.+..+|+.+.+..|.....
T Consensus 18 K~~~L~~ll~~~~~~~---------~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~ 75 (172)
T 1t5i_A 18 KNRKLFDLLDVLEFNQ---------VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 75 (172)
T ss_dssp HHHHHHHHHHHSCCSS---------EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCc---------EEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHH
Confidence 4455555555556555 899999999999999999999999999999999988877644
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.17 E-value=0.024 Score=41.53 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=47.5
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..+++-..... +|+|++++..++.++..|...++.+..+|+.+.+..|.....
T Consensus 17 K~~~l~~ll~~~~~~~---------~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 74 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQ---------AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 74 (165)
T ss_dssp HHHHHHHHHHHTTCSC---------EEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC---------EEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 4455555555555555 899999999999999999999999999999999988876644
No 82
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.16 E-value=0.23 Score=47.79 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=62.8
Q ss_pred cCCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-cccccCCCCCcEE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARGLDIPHVKHV 180 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gvdl~~~~~V 180 (237)
..+.+++|.|||+.-+.++.+.+.+ .++.+..+++..+..++...++.+.+|..+|+|+|.. +...+.+.+..+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3467999999999988888777753 3678899999999999999999999999999999954 4445677777776
Q ss_pred EE
Q psy15610 181 IN 182 (237)
Q Consensus 181 i~ 182 (237)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 83
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.83 E-value=0.075 Score=46.78 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=62.3
Q ss_pred HHHHhhcceeEEEeec----cCCCCCceeEEEEeech-hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhh
Q psy15610 3 AKEFLYRYIFLAIGRV----GSTSENITQRIAWVDEQ-DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLH 77 (237)
Q Consensus 3 ~~~~l~~~~~i~~~~~----~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~ 77 (237)
++.++.+|..+.+... ......+.+.+...+.. .+...+...+.... .......++|+||+|+..++.+++.|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~iVF~~s~~~~~~l~~~L~ 360 (563)
T 3i5x_A 282 ANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI-KERDSNYKAIIFAPTVKFTSFLCSILK 360 (563)
T ss_dssp TTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH-HHTTTCCEEEEECSCHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHH-hhcCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 4456666655544321 13345566666666542 33333332222211 111345689999999999999999998
Q ss_pred hc---CCCceeecCCcchhhHHHHhh
Q psy15610 78 HH---GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 78 ~~---~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.. ++.+..+|+.+.+..|..+..
T Consensus 361 ~~~~~~~~v~~~h~~~~~~~R~~~~~ 386 (563)
T 3i5x_A 361 NEFKKDLPILEFHGKITQNKRTSLVK 386 (563)
T ss_dssp HHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred HhccCCceEEEecCCCCHHHHHHHHH
Confidence 87 899999999999999887754
No 84
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.58 E-value=0.13 Score=49.20 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=63.2
Q ss_pred cCCceEEEEeecccchHHHHHHHhh---CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccc----cccCCCCCc
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHH---HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAA----RGLDIPHVK 178 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~----~Gvdl~~~~ 178 (237)
.++.+++|.+||+.-+.++.+.+.. .++.+..+||+++..++....+.+.+|..+|+|+|+-.- .-+++..+.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4567899999999999999999987 467899999999998888899999999999999995311 114556777
Q ss_pred EEEE
Q psy15610 179 HVIN 182 (237)
Q Consensus 179 ~Vi~ 182 (237)
++|.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.55 E-value=0.018 Score=43.49 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=46.5
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..++.-.... +|+||+++..++.++..|...++.+..+++.+.+..|.....
T Consensus 42 K~~~L~~~l~~~~~~----------~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 98 (191)
T 2p6n_A 42 KMVYLLECLQKTPPP----------VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 98 (191)
T ss_dssp HHHHHHHHHTTSCSC----------EEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC----------EEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 344454444445567 899999999999999999999999999999999988877644
No 86
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=93.45 E-value=0.053 Score=41.57 Aligned_cols=56 Identities=32% Similarity=0.431 Sum_probs=45.6
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+..+++...... +|+||+++..++.+++.|...++.+..+|+.+.+..|..+..
T Consensus 20 ~~l~~ll~~~~~~~---------~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~ 75 (212)
T 3eaq_A 20 EVLSDLLYVASPDR---------AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLG 75 (212)
T ss_dssp HHHHHHHHHHCCSC---------EEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 34444444554445 899999999999999999999999999999999998877744
No 87
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.20 E-value=0.025 Score=42.42 Aligned_cols=58 Identities=59% Similarity=0.816 Sum_probs=38.8
Q ss_pred chhHHHHHHHhh-cCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLL-SSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll-~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..+++-. .... +|+||+++..++.+++.|...++.+..+++.+.+..|.....
T Consensus 32 K~~~L~~ll~~~~~~~k---------~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~ 90 (185)
T 2jgn_A 32 KRSFLLDLLNATGKDSL---------TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 90 (185)
T ss_dssp HHHHHHHHHHHC-CCSC---------EEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHH
T ss_pred HHHHHHHHHHhcCCCCe---------EEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHH
Confidence 445555555555 3342 899999999999999999999999999999998887766543
No 88
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.35 E-value=0.4 Score=36.35 Aligned_cols=72 Identities=26% Similarity=0.333 Sum_probs=52.7
Q ss_pred CceEEEEeecccchHHHHHHHhhC-----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----c-ccccCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----A-ARGLDIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gvdl~~ 176 (237)
..+++|.++++..+.++.+.+... +..+..++|+.+..+... .+.++..+|+|+|.. + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888777653 678999999988766543 345567799999952 1 22356677
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
++++|.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777665
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.56 E-value=0.024 Score=41.75 Aligned_cols=40 Identities=28% Similarity=0.528 Sum_probs=37.0
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
+|+||+++..++.+++.|...++.+..+|+.+.+..|...
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72 (170)
Confidence 8999999999999999999999999999999988887765
No 90
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.89 E-value=0.41 Score=41.88 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=54.3
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
.+.++|.+|++.-+....+.+...++.+..++++.+..++......+..+..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46799999999999999999999999999999999999999999999999999999985
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.31 E-value=0.12 Score=42.00 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=39.4
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||+|+..++.+++.|...++.+..+|+.+.+..+..+..
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~ 72 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMG 72 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999887755
No 92
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.23 E-value=0.42 Score=42.58 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=53.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHh--hcCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRF--RSGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f--~~g~~~vlv~T~ 166 (237)
.+.+||.+|++.-+....+.|...|+.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999988899999999999999998888888 567899999996
No 93
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.04 E-value=0.76 Score=35.48 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=51.6
Q ss_pred CceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cc-cccCCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AA-RGLDIPHV 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~-~Gvdl~~~ 177 (237)
+.+++|.+++++-+.++.+.+.. .++.+..++|+.+.......+.. ..+|+|+|+. +. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56799999999988888776654 47889999999988766544432 4789999952 22 23467777
Q ss_pred cEEEE
Q psy15610 178 KHVIN 182 (237)
Q Consensus 178 ~~Vi~ 182 (237)
.++|.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77664
No 94
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.19 E-value=0.11 Score=44.23 Aligned_cols=57 Identities=47% Similarity=0.696 Sum_probs=47.2
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+..++..++.-.... +|+||+|+..++.+++.|...++.+..+|+++.+..|..+..
T Consensus 288 k~~~l~~~l~~~~~~----------~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 344 (434)
T 2db3_A 288 KRSKLIEILSEQADG----------TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALR 344 (434)
T ss_dssp HHHHHHHHHHHCCTT----------EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC----------EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 445555555555566 799999999999999999999999999999999998887644
No 95
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.29 E-value=1.2 Score=34.60 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=51.4
Q ss_pred CCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cc--cccCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AA--RGLDIP 175 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gvdl~ 175 (237)
...+++|.++++..+.++.+.+... ++.+..++|+.+..+....+ .+..+|+|+|.. +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999888887776553 78889999998876544332 246789999942 11 345677
Q ss_pred CCcEEEE
Q psy15610 176 HVKHVIN 182 (237)
Q Consensus 176 ~~~~Vi~ 182 (237)
.++++|.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7777665
No 96
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.64 E-value=0.5 Score=43.53 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh------
Q psy15610 5 EFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH------ 78 (237)
Q Consensus 5 ~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~------ 78 (237)
+|+.++..+.+. .....++++|...+..++....+..+..... .....++|+|+++...++.+++.|..
T Consensus 257 ~~~~~~~vi~v~---gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~ 331 (773)
T 2xau_A 257 RYFNDAPLLAVP---GRTYPVELYYTPEFQRDYLDSAIRTVLQIHA--TEEAGDILLFLTGEDEIEDAVRKISLEGDQLV 331 (773)
T ss_dssp HHTTSCCEEECC---CCCCCEEEECCSSCCSCHHHHHHHHHHHHHH--HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccccc---CcccceEEEEecCCchhHHHHHHHHHHHHHH--hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhc
Confidence 455554445443 2224566666655555544333333222111 12356899999999999999999975
Q ss_pred -----cCCCceeecCCcchhhHHHH
Q psy15610 79 -----HGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 79 -----~~~~~~~~~~~~~~~~~~~~ 98 (237)
.++.+..+|+.+.+..+..+
T Consensus 332 ~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 332 REEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp HHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred ccccCCCeEEEEeCCCCCHHHHHHH
Confidence 56778999999998888766
No 97
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=87.85 E-value=1.3 Score=40.60 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=85.2
Q ss_pred eccCCCCCcee-EEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhH
Q psy15610 17 RVGSTSENITQ-RIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKER 95 (237)
Q Consensus 17 ~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (237)
+.+.+...+.+ .++...+.+|...+.+.+.... ....++|+|++|+..++.+++.|...|++...+|+...+..+
T Consensus 438 Ptnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~----~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~ 513 (822)
T 3jux_A 438 PTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRY----KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEA 513 (822)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH----HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHH
T ss_pred CCCCCcceeecCcEEEecHHHHHHHHHHHHHHHh----hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHH
Confidence 34444455555 3556677889999998887542 134689999999999999999999999999999998544444
Q ss_pred HHHhhhhhhccCCceEEEEeecccchHHHHHHH----hhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 96 EEAQQYTLISCDEALTLVFVETKKGADQLEDFL----HHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 96 ~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
..+. ....... |.+.|.-.++.+.--| .+.| ...+++..++...|.-+...=++|+
T Consensus 514 ~ii~----~ag~~g~--VtVATdmAgRGtDI~lg~~V~~~G-glhVInte~Pes~r~y~qriGRTGR 573 (822)
T 3jux_A 514 EIVA----KAGQKGM--VTIATNMAGRGTDIKLGPGVAELG-GLCIIGTERHESRRIDNQLRGRAGR 573 (822)
T ss_dssp HHHH----HHHSTTC--EEEEETTTTTTCCCCCCTTTTTTT-SCEEEESSCCSSHHHHHHHHTTSSC
T ss_pred HHHH----hCCCCCe--EEEEcchhhCCcCccCCcchhhcC-CCEEEecCCCCCHHHHHHhhCcccc
Confidence 3332 1222334 4445544333322111 1112 1268888888888877777777654
No 98
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=87.54 E-value=1.4 Score=40.74 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=80.9
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCC
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDE 108 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (237)
++.+.+.+|...|.+++.... ....++|+||+|+..++.++..|...|+++..+|++..+..+..+. .....
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~----~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~----~ag~~ 480 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRY----MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE----EAGQK 480 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHH----HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT----TTTST
T ss_pred EEEeCHHHHHHHHHHHHHHHH----hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH----HcCCC
Confidence 455667889999998886431 1345799999999999999999999999999999998777765442 22223
Q ss_pred ceEEEEeecccchHHHHHHH----hhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 109 ALTLVFVETKKGADQLEDFL----HHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
.. |.+.|.-.++.+.--+ .+.| ...+++-+++.+.+.-+...=++|+
T Consensus 481 g~--VlIATdmAgRG~DI~l~~~V~~~g-gl~VIn~d~p~s~r~y~hr~GRTGR 531 (844)
T 1tf5_A 481 GA--VTIATNMAGRGTDIKLGEGVKELG-GLAVVGTERHESRRIDNQLRGRSGR 531 (844)
T ss_dssp TC--EEEEETTSSTTCCCCCCTTSGGGT-SEEEEESSCCSSHHHHHHHHTTSSG
T ss_pred Ce--EEEeCCccccCcCccccchhhhcC-CcEEEEecCCCCHHHHHhhcCcccc
Confidence 34 4455544444332211 1111 2367888888888877777777664
No 99
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.50 E-value=1.2 Score=33.91 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhC---CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc------cccccCCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV------AARGLDIPHV 177 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gvdl~~~ 177 (237)
.+.+++|.++++.-+.++.+.+... +..+..++|+.+....... +. ...+|+|+|.. ....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999998888763 6788888888776544332 22 34789999952 1224566777
Q ss_pred cEEEE
Q psy15610 178 KHVIN 182 (237)
Q Consensus 178 ~~Vi~ 182 (237)
+++|.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77665
No 100
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.69 E-value=0.47 Score=39.46 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=39.0
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||++...++.+++.|...++.+..+|+.+.+..|.....
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999988877644
No 101
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.69 E-value=1.9 Score=31.99 Aligned_cols=71 Identities=24% Similarity=0.201 Sum_probs=49.8
Q ss_pred CceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cc-cccCCCCCcE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AA-RGLDIPHVKH 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~-~Gvdl~~~~~ 179 (237)
+.+++|.++++..+.++.+.+... ...+..++|+.+.......+. ...+|+|+|.. +. ..+++...++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 567999999999999998888765 467888898887654433322 25789999952 22 2345667777
Q ss_pred EEE
Q psy15610 180 VIN 182 (237)
Q Consensus 180 Vi~ 182 (237)
+|.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 102
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.25 E-value=1.4 Score=33.59 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=50.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhC-----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----c-ccccCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH-----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----A-ARGLDIP 175 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gvdl~ 175 (237)
.+.+++|.++++.-+.++.+.+... ++.+..++|+.+..++.... ...+|+|+|.. + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999888877653 67889999998876654432 25789999953 1 1234566
Q ss_pred CCcEEEE
Q psy15610 176 HVKHVIN 182 (237)
Q Consensus 176 ~~~~Vi~ 182 (237)
.++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6666664
No 103
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=86.16 E-value=0.57 Score=38.59 Aligned_cols=56 Identities=34% Similarity=0.463 Sum_probs=46.0
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+..+........ +|+|++++..++.+++.|...++.+..+|+.+.+..|.....
T Consensus 232 ~~l~~~~~~~~~~~---------~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 287 (395)
T 3pey_A 232 DVLTELYGLMTIGS---------SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 287 (395)
T ss_dssp HHHHHHHTTTTSSE---------EEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCC---------EEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Confidence 44445555555555 899999999999999999999999999999999988877644
No 104
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=86.05 E-value=0.4 Score=39.98 Aligned_cols=56 Identities=29% Similarity=0.538 Sum_probs=42.8
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+..+..-..... +|+|+++...++.+++.|...++.+..+|+.+.+..|..+..
T Consensus 269 ~~l~~~~~~~~~~~---------~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~ 324 (414)
T 3eiq_A 269 DTLCDLYETLTITQ---------AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 324 (414)
T ss_dssp HHHHHHHHSSCCSS---------CEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc---------EEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHH
Confidence 44545555555445 899999999999999999999999999999999988877643
No 105
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=85.79 E-value=0.45 Score=39.74 Aligned_cols=42 Identities=36% Similarity=0.617 Sum_probs=38.8
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||+++..++.+++.|...++.+..+|+.+.+..|.....
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 320 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999988876644
No 106
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.66 E-value=2 Score=33.28 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=48.7
Q ss_pred CceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cc-cccCCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AA-RGLDIPHV 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~-~Gvdl~~~ 177 (237)
+.+++|.+++++.+.++.+.+.. .+..+..++|+.+.......+ ....+|+|+|.. +. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 35899999999998888777654 356788889888765443222 246789999952 11 23466677
Q ss_pred cEEEE
Q psy15610 178 KHVIN 182 (237)
Q Consensus 178 ~~Vi~ 182 (237)
+++|.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77664
No 107
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.18 E-value=1.4 Score=33.70 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----ccc--ccCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AAR--GLDIP 175 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~--Gvdl~ 175 (237)
++.+++|.+|++..+.++.+.+... +..+..++|+.+........ +..+|+|+|.. +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999998888877654 47888999987765443322 36789999952 222 35566
Q ss_pred CCcEEEE
Q psy15610 176 HVKHVIN 182 (237)
Q Consensus 176 ~~~~Vi~ 182 (237)
.++++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6766664
No 108
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.87 E-value=1.5 Score=33.61 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=44.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC-----cccc-ccCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATA-----VAAR-GLDIPH 176 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gvdl~~ 176 (237)
.+.+++|.++++..+.++.+.+... +..+..++|+.+.... ...+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999888887653 5677778887654332 2345566789999994 2223 345666
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
++++|.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 109
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.68 E-value=0.65 Score=38.31 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=47.8
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..++....... +|+|+++...++.+++.|...++.+..+|+.+.+..|.....
T Consensus 237 ~~~~l~~~l~~~~~~~---------~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 294 (391)
T 1xti_A 237 KNRKLFDLLDVLEFNQ---------VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294 (391)
T ss_dssp HHHHHHHHHHHSCCSE---------EEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCc---------EEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 3455555666666656 899999999999999999999999999999999888876644
No 110
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.36 E-value=0.63 Score=37.92 Aligned_cols=42 Identities=36% Similarity=0.637 Sum_probs=38.3
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||++...++.+++.|...++.+..+|+.+.+..|.....
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 282 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIR 282 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 799999999999999999999999999999999888876644
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.91 E-value=3.5 Score=32.19 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=50.7
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC-----ccc--cccCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA-----VAA--RGLDIP 175 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gvdl~ 175 (237)
.+.+++|.+|++.-+.++.+.+.. .+..+..+.|+.+....... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467799999999999888777765 36678888998876654433 3333 78999994 121 245677
Q ss_pred CCcEEEE
Q psy15610 176 HVKHVIN 182 (237)
Q Consensus 176 ~~~~Vi~ 182 (237)
.+.++|.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777664
No 112
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=83.61 E-value=0.68 Score=41.79 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=37.1
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE 94 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (237)
...++|+|++|+..++.+++.|...++.+..+|+.+.+..
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence 4568999999999999999999999999999999998875
No 113
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=83.17 E-value=0.42 Score=42.25 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=63.5
Q ss_pred hHHHHhhcceeEEEeec----cCCCCCceeEEEEeech-hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHh
Q psy15610 2 LAKEFLYRYIFLAIGRV----GSTSENITQRIAWVDEQ-DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFL 76 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~----~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l 76 (237)
+++.++.+|..+.+... ......+.+.+...+.. .+...+...+.... .......++|+||+|+..++.+++.|
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 230 LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI-KERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH-HHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHH-hhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 34566676655554321 13345666666666542 23322222222211 11134568999999999999999999
Q ss_pred hhc---CCCceeecCCcchhhHHHHhh
Q psy15610 77 HHH---GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~~~~ 100 (237)
... ++.+..+|+.+.+..|.....
T Consensus 309 ~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 309 KNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred HHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 887 899999999999998887755
No 114
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.07 E-value=2.6 Score=31.25 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=49.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC-----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----ccc-ccCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AAR-GLDIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-Gvdl~~ 176 (237)
+.+++|.++++..+.++.+.+... +..+..++|+.+..+.... + .+..+|+|+|.. +.. ..++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999988887777543 5778889999887654322 2 346789999952 222 335666
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
++++|.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 115
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.98 E-value=0.69 Score=38.38 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=46.4
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
...+..+++...... +|+||++...++.+++.|...++.+..+|+.+.+..|.....
T Consensus 246 ~~~l~~~~~~~~~~~---------~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 246 LHCLNTLFSKLQINQ---------AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp HHHHHHHHHHSCCSE---------EEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCc---------EEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Confidence 344555555555545 899999999999999999999999999999999888876644
No 116
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.58 E-value=0.66 Score=38.69 Aligned_cols=42 Identities=76% Similarity=1.134 Sum_probs=38.8
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+|+++...++.+++.|...++.+..+|+.+.+..|.....
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999988876644
No 117
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=82.33 E-value=0.26 Score=42.35 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
+|+||+++..++.+++.|...++.+..+|+.+.+..|..+
T Consensus 336 ~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~ 375 (479)
T 3fmp_B 336 AMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAV 375 (479)
T ss_dssp ----------------------------------------
T ss_pred eEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHH
Confidence 7999999999999999999999999999999998888665
No 118
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=82.07 E-value=0.89 Score=41.07 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=48.2
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..+...+...|.... ..+.++|+||+|+..++.+++.|...++.+..+|+++.+..|..+..
T Consensus 422 ~~~~~~Ll~~l~~~~----~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~ 483 (664)
T 1c4o_A 422 ENQILDLMEGIRERA----ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIR 483 (664)
T ss_dssp TTHHHHHHHHHHHHH----HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH----hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHH
Confidence 345555554443321 23468999999999999999999999999999999999998877754
No 119
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=82.03 E-value=1.8 Score=41.25 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=55.4
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCC----ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-ccccc-CCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGY----PVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARGL-DIPH 176 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~----~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gv-dl~~ 176 (237)
.+.+++|.+||+.-+.++.+.+.. .++ .+..++|+.+..++....+.+++ .+|+|+|+- +..-+ ++..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999998888777754 356 78999999999988888888877 899999952 11111 1556
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
++++|.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666664
No 120
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.83 E-value=1.5 Score=33.06 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=43.4
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcc------ccccCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA------ARGLDIPH 176 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~------~~Gvdl~~ 176 (237)
.+.+++|.++++..+.++.+.+.. .+..+..++|+.+..+.... +. ..+|+|+|... ....++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999998888777654 36788889998766544322 22 27899999521 23445666
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
++++|.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 121
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=81.42 E-value=0.75 Score=41.51 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=47.6
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..+...+...|... ...+.++|+||+|+..++.+++.|...++++..+|+++.+..|..+..
T Consensus 428 ~~~~~~Ll~~l~~~----~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~ 489 (661)
T 2d7d_A 428 EGQIDDLIGEIQAR----IERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIR 489 (661)
T ss_dssp TTHHHHHHHHHHHH----HTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHH----HhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHH
Confidence 34444454444332 123458999999999999999999999999999999999988877754
No 122
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.13 E-value=2.2 Score=39.40 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=53.4
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
++.+.+.+|...+.+++.... ....++|+||+|+...+.+++.|...|++...++++..+..+..+
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~----~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERT----AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV 483 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence 355677889999998885431 134579999999999999999999999999999999766665544
No 123
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=80.06 E-value=0.54 Score=42.41 Aligned_cols=45 Identities=24% Similarity=0.421 Sum_probs=38.2
Q ss_pred ccceeEEeecccchhhHHHHhhhc------CCCceeecCC--------cchhhHHHHhh
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHH------GYPVTSIHGD--------RTQKEREEAQQ 100 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~------~~~~~~~~~~--------~~~~~~~~~~~ 100 (237)
+.++|+|++++..++.++++|... |+.+..+|+. +.+..|..+..
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 688999999999999999999987 8999999999 88888887755
No 124
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.85 E-value=0.73 Score=38.87 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=46.1
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecC--------CcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHG--------DRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~ 100 (237)
.|+..|.++|...... ..+.++|+||++...++.+++.|...++.+..+++ .+.+..|.....
T Consensus 343 ~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~ 413 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILD 413 (494)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHH
Confidence 4666666666553211 24678999999999999999999999999999999 777777765543
No 125
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=77.17 E-value=3.2 Score=38.68 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=52.9
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
++.+.+.+|...+.+.+.... ....++|+||+|+..++.+++.|...|++...+++...+..+..+
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~----~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~ii 502 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERY----AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATII 502 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHH----HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHH----hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence 456677889999988886431 134579999999999999999999999999999999765555444
No 126
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.91 E-value=14 Score=24.74 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=39.4
Q ss_pred hccCCceEEEEeecccchHHHHHHH---hhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEE
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFL---HHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL 162 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L---~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 162 (237)
...+...+++.+.|.. -+-+.+++ ...|..+.+++...+...|......|++...++-
T Consensus 73 erypqldvvvivttdd-kewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvr 133 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDD-KEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVR 133 (162)
T ss_dssp HHCTTCCEEEEEECCC-HHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEE
T ss_pred HhCCCCcEEEEEecCc-HHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceee
Confidence 3344455555555443 44555555 4568889988888899889989999998766553
No 127
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=76.72 E-value=1.7 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..++++||.+...+...+..|...|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999988899999999999999999988764
No 128
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=76.36 E-value=1.8 Score=28.51 Aligned_cols=36 Identities=8% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~ 142 (237)
+..++++||.+...+...+..|...|+++..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 457899999999889999999999999888888875
No 129
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=76.26 E-value=0.53 Score=38.88 Aligned_cols=91 Identities=25% Similarity=0.404 Sum_probs=12.0
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
++..++.+|..+.+........++.+.+..++..+ |...+.+++... ...++|+||++...++.+++.|...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~~ 283 (394)
T 1fuu_A 210 VTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI------SVTQAVIFCNTRRKVEELTTKLRNDK 283 (394)
T ss_dssp HHHHHCCSCEEEEECC----------------------------------------------------------------
T ss_pred HHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcC------CCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 35677888888887666666778888887777655 778888777654 24579999999999999999999999
Q ss_pred CCceeecCCcchhhHHHH
Q psy15610 81 YPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (237)
+.+..+|+.+.+..|...
T Consensus 284 ~~~~~~~~~~~~~~r~~~ 301 (394)
T 1fuu_A 284 FTVSAIYSDLPQQERDTI 301 (394)
T ss_dssp ------------------
T ss_pred CeEEEeeCCCCHHHHHHH
Confidence 999999999988877655
No 130
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=75.44 E-value=1.8 Score=28.31 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..+++++|.+...+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3578999999998899999999999998888888753
No 131
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=74.25 E-value=5.9 Score=31.26 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=52.6
Q ss_pred echhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc-CCCceeecCCcchhhHHHHhh
Q psy15610 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 100 (237)
....|+..|.++|..... .+.++|+||++...++.+...|... ++++..+++.+.+..|.....
T Consensus 93 ~~s~K~~~L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHH
Confidence 446788888888876532 3568999999999999999999885 999999999999888876644
No 132
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=74.11 E-value=1.5 Score=38.02 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=34.6
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc------------CCCceeecCCcchhhHHHHhhhhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEAQQYTL 103 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 103 (237)
.|+..|.++|..... ...+.++|+||++...++.+++.|... |.....+|+.+.+..|..+ +
T Consensus 372 ~K~~~L~~~l~~~~~--~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~----~ 445 (556)
T 4a2p_A 372 PKLEELVCILDDAYR--YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV----L 445 (556)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred hHHHHHHHHHHHHhc--CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHH----H
Confidence 455666666643311 134678999999999999999999876 3444455566777776655 3
Q ss_pred hccCC-ceEEEEeecccchHHH
Q psy15610 104 ISCDE-ALTLVFVETKKGADQL 124 (237)
Q Consensus 104 ~~~~~-~~~iIF~~t~~~~~~l 124 (237)
..+.. +..-|.+.|....+.+
T Consensus 446 ~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 446 DAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp --------CCEEEEEC------
T ss_pred HHhcccCceEEEEEcCchhcCC
Confidence 33333 3333555555444433
No 133
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=73.70 E-value=2.3 Score=36.73 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=48.0
Q ss_pred CceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cccc-c-CCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AARG-L-DIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~G-v-dl~~ 176 (237)
+.+++|.||++.-+.++.+.+... ++.+..++|+.+...+..... +..+|+|+|.- +..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 578999999999888777766554 889999999986654432221 13789999842 2222 2 4555
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 676665
No 134
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=73.53 E-value=2.4 Score=28.21 Aligned_cols=36 Identities=8% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~ 142 (237)
+..+++++|.+-......+..|...|+....+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356899999998888999999999999887787775
No 135
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=72.40 E-value=4.6 Score=37.14 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=45.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cccc-c-CCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AARG-L-DIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~G-v-dl~~ 176 (237)
+.+++|.||++..+.++...+... ++.+..+||+.+...+..... +..+|+|+|.- +..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877666553 889999999987655432221 25789999942 2222 2 4555
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 676664
No 136
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.76 E-value=2.1 Score=32.24 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=46.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC--------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----ccc-ccC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH--------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AAR-GLD 173 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-Gvd 173 (237)
+.+++|.++++..+.++.+.+... +..+..++|+.+..+.. +.+ ....+|+|+|.. +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999988887766543 56788888887543321 111 235789999942 222 345
Q ss_pred CCCCcEEEE
Q psy15610 174 IPHVKHVIN 182 (237)
Q Consensus 174 l~~~~~Vi~ 182 (237)
+..++++|.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 566666554
No 137
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=71.10 E-value=2.7 Score=27.13 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=30.0
Q ss_pred ceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
.+++++|.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988888899999999988778888764
No 138
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=71.01 E-value=0.88 Score=39.53 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=38.1
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..+..+........ +|+||+++..++.+++.|...+..+..+|+.+.+..|.....
T Consensus 346 ~~l~~ll~~~~~~~---------~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~ 401 (508)
T 3fho_A 346 NVLVELYGLLTIGQ---------SIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMD 401 (508)
T ss_dssp HHHHHHHC---CCC---------EEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTH
T ss_pred HHHHHHHHhcCCCc---------EEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 44444445455555 899999999999999999999999999999988877665533
No 139
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.28 E-value=1.2 Score=34.24 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=46.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----ccc---ccCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AAR---GLDI 174 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~---Gvdl 174 (237)
.+.+++|.+|+++-+.++.+.+... +..+..++|+.....+ ......+..+|+|+|+- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999888877654 6666666664322111 11223456789999942 212 4677
Q ss_pred CCCcEEEE
Q psy15610 175 PHVKHVIN 182 (237)
Q Consensus 175 ~~~~~Vi~ 182 (237)
..+.++|.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77877665
No 140
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.11 E-value=20 Score=24.05 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=38.7
Q ss_pred EEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
.++|....+-..++-..+...|.++..++++.+...|..-++.|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 45777777777777888888899999999999988888888877654333
No 141
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=69.66 E-value=2.4 Score=40.15 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=48.8
Q ss_pred echhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCC------------------------------
Q psy15610 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYP------------------------------ 82 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~------------------------------ 82 (237)
....+...+.+.+... +..++|+|+.|+..+++++..|...++.
T Consensus 319 ~~~~~~~~li~~l~~~------~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 392 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKR------ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQIL 392 (997)
T ss_dssp CCTTHHHHHHHHHHHT------TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHH
T ss_pred cchhHHHHHHHHHHhC------CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHH
Confidence 4455677777777654 3567999999999999999999887763
Q ss_pred ---------ceeecCCcchhhHHHHhh
Q psy15610 83 ---------VTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 83 ---------~~~~~~~~~~~~~~~~~~ 100 (237)
+..+|+.+.+..+..+..
T Consensus 393 ~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 393 KTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred HHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 467899999988877765
No 142
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=69.40 E-value=3.7 Score=34.96 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=33.3
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCcch
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQ 92 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (237)
..++|+|++|+..++.+++.|...++.+..+|+...+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 224 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFD 224 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHH
Confidence 4479999999999999999999999999999987663
No 143
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.49 E-value=3 Score=33.39 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=46.2
Q ss_pred CceEEEEeecccchHHHHHHHhhC-----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----c-c-cccCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----A-A-RGLDIP 175 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~-~Gvdl~ 175 (237)
..+++|.+||++-+.++.+.+... +..+..+.|+....... ....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999987777653 46677777765532211 345689999953 1 1 245677
Q ss_pred CCcEEEE
Q psy15610 176 HVKHVIN 182 (237)
Q Consensus 176 ~~~~Vi~ 182 (237)
.+.++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777765
No 144
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.75 E-value=11 Score=29.78 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=48.5
Q ss_pred CceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcc-----cc-ccCCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA-----AR-GLDIPHV 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~-----~~-Gvdl~~~ 177 (237)
+.+++|.+|++.-+.++.+.+.+ .+..+..++|+.+..+.... +. ..+|+|+|... .. .+++...
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 57899999999999888887764 35788999999887655432 22 37899998421 11 2345556
Q ss_pred cEEEE
Q psy15610 178 KHVIN 182 (237)
Q Consensus 178 ~~Vi~ 182 (237)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66554
No 145
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=67.29 E-value=6.1 Score=27.86 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=30.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 457899999998888899999999998 5888989874
No 146
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=66.76 E-value=4.7 Score=28.12 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 467899999999999999999999998 5888999863
No 147
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=66.73 E-value=4.5 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCceEEEEeecc--cchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETK--KGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~--~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..++++||.+. ..+...+..|...|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356899999987 5788899999999999999999864
No 148
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=66.60 E-value=3.2 Score=28.38 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=31.0
Q ss_pred CCceEEEEeecccc--hHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKG--ADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~--~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..+++++|.+... +...+..|...|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35689999999887 78899999999999888888753
No 149
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=66.18 E-value=3.7 Score=35.08 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=32.0
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCc
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 90 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (237)
..++|+|++|+..++.+++.|...++.+..+|+..
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~ 224 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKS 224 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHH
Confidence 45799999999999999999999999999999863
No 150
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=66.08 E-value=4.4 Score=38.23 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=51.0
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh-cCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
...|...|.+++... ...++|+||+++..++.++..|.. .++++..+|+.+.+..|.....
T Consensus 487 ~~~K~~~L~~ll~~~------~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~ 548 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSH------RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAA 548 (968)
T ss_dssp TSHHHHHHHHHHHHT------SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHH
T ss_pred ccHHHHHHHHHHHhC------CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 345888888888752 456799999999999999999995 6999999999999998877644
No 151
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=65.60 E-value=4 Score=34.66 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCc
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 90 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (237)
..++++||+++..++.+++.|...++.+..+|+..
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 211 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT 211 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchh
Confidence 45799999999999999999999999999999844
No 152
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=65.39 E-value=7.1 Score=25.91 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..+++++|.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4578999999988888999999999986578888864
No 153
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=64.31 E-value=3.7 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3567999999988888999999999985 888888753
No 154
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=64.19 E-value=4.8 Score=27.66 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4578999999988888999999988885 888999864
No 155
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=64.00 E-value=3 Score=39.25 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc------------CCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.|+..|.++|..... ...+.++|+||+++..++.++.+|... |.....+|+.+.+..|..+..
T Consensus 613 ~K~~~L~~lL~~~~~--~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~ 687 (936)
T 4a2w_A 613 PKLEELVCILDDAYR--YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 687 (936)
T ss_dssp HHHHHHHHHHHHTTT--SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------
T ss_pred HHHHHHHHHHHHHhc--cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHH
Confidence 455556666654211 124678999999999999999999886 444455567787777766643
No 156
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=63.74 E-value=27 Score=25.20 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
...+.|.|.+..+++.+.+.|...|+++..+.++.. ...-.|.|+|-....|+.+ +.|+.+++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 467889999999999999999999888877765431 1234699999999999885 56666654
No 157
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=62.96 E-value=4.6 Score=27.60 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=30.7
Q ss_pred ceEEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 109 ALTLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 109 ~~~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
.+++++| .+-..+...+..|...|+++..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 47778888999999999999999998654
No 158
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=62.93 E-value=4.3 Score=36.66 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.7
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCC
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGD 89 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~ 89 (237)
..++|+||+++..++.+++.|...++.+..+|+.
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~ 443 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK 443 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH
Confidence 5679999999999999999999999999999994
No 159
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.76 E-value=1.4 Score=39.72 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=38.0
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC----CCceeec--------CCcchhhHHHH
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG----YPVTSIH--------GDRTQKEREEA 98 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~----~~~~~~~--------~~~~~~~~~~~ 98 (237)
...|+..|.++|..... ...+.++|+||+++..++.++++|...+ +.+..++ +.+.+..|..+
T Consensus 378 ~~~k~~~L~~ll~~~~~--~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp CCHHHHHHHHHHHHHHT--TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------
T ss_pred CCHHHHHHHHHHHHHhc--cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHH
Confidence 34577777777764321 1245689999999999999999999988 7777774 47777666655
No 160
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=61.26 E-value=12 Score=33.87 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=38.3
Q ss_pred ceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 58 LTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 58 ~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..++|+.|+..++.+++.|...++.+..+|+.+.+..|..+..
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~ 364 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAK 364 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHH
Confidence 3588999999999999999999999999999999998876654
No 161
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=61.18 E-value=32 Score=22.60 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=36.1
Q ss_pred CceEEEEeec------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHh
Q psy15610 108 EALTLVFVET------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRF 154 (237)
Q Consensus 108 ~~~~iIF~~t------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 154 (237)
..+++||..+ -..|..+.++|...++.+..+.=...++.+..+.+..
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 5689999874 7789999999999999888877655666555555443
No 162
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=60.93 E-value=12 Score=35.04 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=42.4
Q ss_pred cCCceEEEEeecccchHHHHHHH----hhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFL----HHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
..+.+++|.|+|+.-+.+.++.+ ...|+++..+.|++++.+|.... ..+|+++|+
T Consensus 118 L~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 118 LTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 34668999999999877766555 45699999999999987666543 268888884
No 163
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=60.75 E-value=8.2 Score=32.74 Aligned_cols=46 Identities=28% Similarity=0.280 Sum_probs=38.3
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
+.+++|.||++..+.++.+.+...+.. +..+||+.+. ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 578999999999999999999888888 9999998642 356777773
No 164
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=60.64 E-value=34 Score=22.68 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred CceEEEEe------ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHH
Q psy15610 108 EALTLVFV------ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRR 153 (237)
Q Consensus 108 ~~~~iIF~------~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 153 (237)
..+++||. ++-..|..+.++|...++.+..+.=..+++.+..+.+.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 57899998 46778999999999999988888766666665555443
No 165
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=60.41 E-value=11 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=28.4
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++++|.+-..+...+..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4578999999988888999999999885 5555 6643
No 166
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=60.33 E-value=4.8 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..+++++|.+-..+...+..|...|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4578999999988888999999999984 8888887643
No 167
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=59.39 E-value=67 Score=25.71 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=65.5
Q ss_pred ceEEEEeec-----------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC----CCCEEEEcCccccccC
Q psy15610 109 ALTLVFVET-----------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG----ETPILVATAVAARGLD 173 (237)
Q Consensus 109 ~~~iIF~~t-----------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gvd 173 (237)
+-+||+++. ...++.|++.|...|+.+..+ ..++..+-.+.++.|... ..+.+++. .++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~f~~~~dh~~~d~~vv~-~lsHG~~ 138 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVK-KNLTASDMTTELEAFAHRPEHKTSDSTFLV-FMSHGIR 138 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTCGGGGGCSCEEEE-EEEEEET
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEe-eCCCHHHHHHHHHHHHhhhccCCCCEEEEE-EeccCcC
Confidence 568999888 447899999999999997644 568999999999998642 12222221 2334433
Q ss_pred CCCCcEEEEecC------CCCHHHHHHhhcc--ccc-CCCCCceEEeecCCCCCCCCC
Q psy15610 174 IPHVKHVINFDL------PSDVEEYVHRIGR--TGR-MGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 174 l~~~~~Vi~~~~------p~s~~~~~Q~~GR--~~R-~g~~~~~~~~~~~~~~~~~~~ 222 (237)
..|+-.|. ..+...+.+...- +-- .|.+ -++|+.++.++.++.
T Consensus 139 ----~~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKP--KlffIQACRG~~~~~ 190 (302)
T 3e4c_A 139 ----EGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKP--KVIIIQAARGDSPGV 190 (302)
T ss_dssp ----TEEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSC--EEEEEEEECSSSCCC
T ss_pred ----CeEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCc--cEEEEECCCCCCCCc
Confidence 12222221 2356777766632 111 2333 478888888777754
No 168
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=59.05 E-value=23 Score=27.66 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=33.2
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCCH
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRTQ 144 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 144 (237)
.+..+++++|.+-..+...+..|...|+ ++..+.|++..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3457899999999999999999999998 58899998864
No 169
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=58.92 E-value=2.8 Score=37.43 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=31.6
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCC
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGD 89 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~ 89 (237)
..++|+|++|+..++.+++.|...++.+..+|+.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 388 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 388 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH
Confidence 4579999999999999999999999999999985
No 170
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=58.70 E-value=5.9 Score=27.51 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++++|.+-..+...+..|...|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4578999999988888999999999985 888888764
No 171
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=58.30 E-value=5.2 Score=27.73 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4578999999988888889999998985 888988864
No 172
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=58.29 E-value=50 Score=26.08 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=68.9
Q ss_pred CceEEEEeec--------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCcccc
Q psy15610 108 EALTLVFVET--------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAAR 170 (237)
Q Consensus 108 ~~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~ 170 (237)
.+-+|||.+. ...++.|++.|..+|+.+. ++..++..+-.+.++.|..... +.+++ -.++.
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~dh~~~d~~vv-~ilSH 121 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKEDHSKRSSFVC-VLLSH 121 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTSCCTTEEEEEE-EEESC
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhhcccCCCEEEE-EEEcC
Confidence 3567888653 2368899999999999876 4556899999999999986422 22222 12333
Q ss_pred ccCCCCCcEEEEecCCCCHHHHHHhhcccc-c--CCCCCceEEeecCCCCCCCCCCCC
Q psy15610 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTG-R--MGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 171 Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~-R--~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
|.. ..|+-.|.+.+...+.+...-.. . .|.+ -++|+.++.++.+..+..
T Consensus 122 G~~----g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKP--KlffiQACRG~~~~~g~~ 173 (277)
T 4ehd_A 122 GEE----GIIFGTNGPVDLKKITNFFRGDRCRSLTGKP--KLFIIQACRGTELDCGIE 173 (277)
T ss_dssp EET----TEEEETTEEEEHHHHHHTTSTTTCGGGTTSC--EEEEEESCCSSBCBCCCC
T ss_pred CCC----CEEEEeCCcEeHHHHHHHhhhccCchhcCCc--cEEEEecCCCCcccCCcc
Confidence 433 35555555556777776663111 1 2333 478888888877765433
No 173
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=56.97 E-value=14 Score=28.28 Aligned_cols=46 Identities=28% Similarity=0.262 Sum_probs=37.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
..+++|+++++..+.++.+.+...+.. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 578999999999999998888877777 888888753 2467888883
No 174
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=56.91 E-value=5.5 Score=33.69 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.9
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCc
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 90 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (237)
..++++||+++..++.+++.|...++.+..+|+..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 205 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT 205 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 45799999999999999999999999999999874
No 175
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=56.43 E-value=8.1 Score=26.68 Aligned_cols=37 Identities=5% Similarity=0.237 Sum_probs=31.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++++|.+-......+..|...|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3578999999998888899999998984 778888874
No 176
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=55.17 E-value=43 Score=27.01 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=66.2
Q ss_pred CCceEEEEeecc------------cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC----CCEEEEcCcccc
Q psy15610 107 DEALTLVFVETK------------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE----TPILVATAVAAR 170 (237)
Q Consensus 107 ~~~~~iIF~~t~------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~----~~vlv~T~~~~~ 170 (237)
+.+-+||+.+.. ..++.|++.|..+|+.+. ++..++..+-.+.++.|.... .+.+|+ -+++.
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv-~ilSH 137 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTSSSYVQNTECFVM-VLMTH 137 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHTSHHHHTCSCEEE-EEESC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHHHhhcCCCCEEEE-EEccC
Confidence 346788888763 568899999999999875 567789999999999886432 232222 12334
Q ss_pred ccCCCCCcEEEEecCC-CCHHHHHHhhc--cccc-CCCCCceEEeecCCCCCCCCC
Q psy15610 171 GLDIPHVKHVINFDLP-SDVEEYVHRIG--RTGR-MGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 171 Gvdl~~~~~Vi~~~~p-~s~~~~~Q~~G--R~~R-~g~~~~~~~~~~~~~~~~~~~ 222 (237)
|.....-..|+-.|.. .+...+.+..- ++-- .|.+ -++|+.++.+..+..
T Consensus 138 G~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKP--KlffiQACRG~~~d~ 191 (316)
T 2fp3_A 138 GNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKP--KVLMFPFARGDEYDL 191 (316)
T ss_dssp EECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSC--EEEEESCC-------
T ss_pred CCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCc--eEEEEecCCCCcccC
Confidence 5444334555555554 46677776663 1211 2333 478888888776643
No 177
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.11 E-value=5.9 Score=29.30 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=42.3
Q ss_pred CceEEEEeecccchHH-HHHHHhhC---CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----ccc-------c
Q psy15610 108 EALTLVFVETKKGADQ-LEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AAR-------G 171 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~-l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-------G 171 (237)
..+++|+|+++..+.+ +.+.+... ++.+..++|+.....+..... ...+|+|+|.. +.. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5689999999988777 65555442 678888888765432221111 14689999843 111 2
Q ss_pred cCCCCCcEEEE
Q psy15610 172 LDIPHVKHVIN 182 (237)
Q Consensus 172 vdl~~~~~Vi~ 182 (237)
+.+...++||.
T Consensus 158 ~~~~~~~~iIi 168 (216)
T 3b6e_A 158 VQLSDFSLIII 168 (216)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhcccEEEE
Confidence 45566676664
No 178
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=53.25 E-value=7.5 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++++||.+...+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3567999999988888999999999985 788888753
No 179
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=53.00 E-value=43 Score=21.58 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=39.3
Q ss_pred CceEEEEe------ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 108 EALTLVFV------ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 108 ~~~~iIF~------~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
..+++||. +.-..|..+..+|...++.+..+.-...+..+..+.+.+....+..++
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 34688887 456789999999999998888887776776666665555433444443
No 180
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=52.81 E-value=25 Score=24.06 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=34.7
Q ss_pred EeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHh
Q psy15610 114 FVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRF 154 (237)
Q Consensus 114 F~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 154 (237)
||.+.+.|..+..+|..+++.+..+.-+++++.|....+..
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 34455667899999999999999999999999998888776
No 181
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=52.03 E-value=42 Score=22.27 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=36.5
Q ss_pred HHhhCCCceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEcCcccc-----ccCCCCCcEEEEecCCCCHHHHHHhhc
Q psy15610 127 FLHHHGYPVTSIHGDRTQKEREEALRRFRS----GETPILVATAVAAR-----GLDIPHVKHVINFDLPSDVEEYVHRIG 197 (237)
Q Consensus 127 ~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~-----Gvdl~~~~~Vi~~~~p~s~~~~~Q~~G 197 (237)
.+......+.++.-.++.......++.++. ....|++.|..... .+... ++.+ +.-|.+...+.+++.
T Consensus 49 ~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g-~~~~--l~kP~~~~~l~~~i~ 125 (143)
T 3cnb_A 49 LLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALG-AETC--FGKPLNFTLLEKTIK 125 (143)
T ss_dssp HHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTT-CSEE--EESSCCHHHHHHHHH
T ss_pred HHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcC-CcEE--EeCCCCHHHHHHHHH
Confidence 333444566666655554444445555544 23445555432211 11111 2222 235778888888887
Q ss_pred ccccC
Q psy15610 198 RTGRM 202 (237)
Q Consensus 198 R~~R~ 202 (237)
++-+.
T Consensus 126 ~~~~~ 130 (143)
T 3cnb_A 126 QLVEQ 130 (143)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76554
No 182
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=51.78 E-value=65 Score=23.28 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=66.3
Q ss_pred CCceEEEEeecc--------------cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc-C---CCCEEEEcCcc
Q psy15610 107 DEALTLVFVETK--------------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS-G---ETPILVATAVA 168 (237)
Q Consensus 107 ~~~~~iIF~~t~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g---~~~vlv~T~~~ 168 (237)
+.+.+|||.+.. ..++.+.+.|..+|+.+. ++..++.++-.+.++.|.+ . ....+|+ -++
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv-~il 109 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQLPAHRVTDSCIV-ALL 109 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHTCGGGGTSSEEEE-EEE
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhhhhhccCCCEEEE-EeC
Confidence 356788887752 268889999999999875 4567889999998988876 2 2333322 122
Q ss_pred ccccCCCCCcEEEEecC-CCCHHHHHHhhc--cccc-CCCCCceEEeecCCCCCCCCCC
Q psy15610 169 ARGLDIPHVKHVINFDL-PSDVEEYVHRIG--RTGR-MGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 169 ~~Gvdl~~~~~Vi~~~~-p~s~~~~~Q~~G--R~~R-~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
+.|.. ..|+-.|. +.+...+....- ++-- .|.+ -++|+.++.+..+..+
T Consensus 110 SHG~~----g~i~g~D~~~v~l~~i~~~F~~~~CpsL~gKP--KlffiQACRG~~~d~G 162 (167)
T 1pyo_A 110 SHGVE----GAIYGVDGKLLQLQEVFQLFDNANCPSLQNKP--KMFFIQACRGDETDRG 162 (167)
T ss_dssp SCEET----TEEECTTSCEEEHHHHHHHTSTTTCGGGTTSC--EEEEEESCSSSBCBCC
T ss_pred CCCCC----CeEEEeCCCEEcHHHHHHHhcccCChhHcCCC--eEEEEECCCCCCCCCC
Confidence 33322 33444443 235666666552 1211 2333 3788888888776554
No 183
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.77 E-value=14 Score=32.41 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.8
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCC--------ceeecCCcch
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYP--------VTSIHGDRTQ 92 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~--------~~~~~~~~~~ 92 (237)
...++|+||+++..++.+++.|...+.. +..+++.+.+
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 3468999999999999999999775432 4456666543
No 184
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=50.88 E-value=21 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCceEEEEeecccchHHHHHHHh-hCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLH-HHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~-~~~~-~~~~~h~~~ 142 (237)
+..++++||.+-..+...+..|. ..|+ ++..+.|++
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 35789999999888888888898 8898 688898875
No 185
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=50.45 E-value=24 Score=31.46 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=47.8
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.|+..|..++..... .++.++|+||++...++.+...|...++.+..+++.+.+..|.....
T Consensus 399 ~K~~~l~~ll~~~~~---~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~ 460 (644)
T 1z3i_X 399 GKMLVLDYILAMTRT---TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVE 460 (644)
T ss_dssp HHHHHHHHHHHHHHH---HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh---cCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHH
Confidence 355555555543321 13568999999999999999999999999999999999888876644
No 186
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=49.93 E-value=64 Score=22.69 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=65.8
Q ss_pred ceEEEEeec--------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCccccc
Q psy15610 109 ALTLVFVET--------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAARG 171 (237)
Q Consensus 109 ~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~G 171 (237)
+-+|||.+. ...++.+.+.|..+|+.+..+ ..++.++-.+.++.|.+... +.+|+ -+++.|
T Consensus 17 G~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~-~dlt~~em~~~l~~~~~~dh~~~dc~vv-~ilSHG 94 (146)
T 2dko_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNK-NDLTREEIVELMRDVSKEDHSKRSSFVC-VLLSHG 94 (146)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHHSCCTTEEEEEE-EEESCE
T ss_pred eEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEe-eCCCHHHHHHHHHHHHHhhcCCCCeEEE-EeccCC
Confidence 567787663 336788999999999997655 46888888889998876532 22222 122333
Q ss_pred cCCCCCcEEEEecCCCCHHHHHHhh-cc-ccc-CCCCCceEEeecCCCCCCCCCC
Q psy15610 172 LDIPHVKHVINFDLPSDVEEYVHRI-GR-TGR-MGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 172 vdl~~~~~Vi~~~~p~s~~~~~Q~~-GR-~~R-~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
.. ..|.-.|.+.+...+.... |. +-- .|.+ -++|+.++.+..+..+
T Consensus 95 ~~----g~i~g~D~~~~l~~i~~~F~~~~CpsL~gKP--KlffiQACRG~~~d~g 143 (146)
T 2dko_A 95 EE----GIIFGTNGPVDLKKITNFFRGDRCRSLTGKP--KLFIIQACRGTELDCG 143 (146)
T ss_dssp ET----TEEEETTEEEEHHHHHHTTSTTTCGGGTTSC--EEEEEESCCSSBCBCC
T ss_pred CC----CEEEEeCCcEeHHHHHHHhccccChhhcCCC--eEEEEECCCCCCCcCC
Confidence 21 3455555555566676655 22 211 2333 3788888887766543
No 187
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=49.24 E-value=52 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=39.3
Q ss_pred CceEEEEee------cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEE
Q psy15610 108 EALTLVFVE------TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL 162 (237)
Q Consensus 108 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 162 (237)
..+++||.. +-..|..+..+|...++.+..+.-...++.+..+.+......+.++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 456888876 4568999999999999999888887777666666555433333333
No 188
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=49.03 E-value=36 Score=21.49 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=34.1
Q ss_pred HHhhCCCceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccc
Q psy15610 127 FLHHHGYPVTSIHGDRTQKEREEALRRFRS----GETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG 200 (237)
Q Consensus 127 ~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~ 200 (237)
.+......+.++.-.++........+.++. ....+++.|+..... ........-.+..|.+...+.+++.++-
T Consensus 40 ~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 40 QLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD-PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS-HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch-hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 333345566666655544334444444443 234455554432221 1101111122345777788877776553
No 189
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=48.63 E-value=96 Score=24.31 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=65.4
Q ss_pred ceEEEEeec-------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCcccccc
Q psy15610 109 ALTLVFVET-------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAARGL 172 (237)
Q Consensus 109 ~~~iIF~~t-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~Gv 172 (237)
+-+|||.+. ...++.|++.|...|+.+..+ ..++..+-.+.++.|..... +.+++ -.++.|.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~~~~~dh~~~d~~v~-~~lsHG~ 110 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF-PNLKSEEINKFIQQTAEMDHSDADCLLV-AVLTHGE 110 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTSCCTTEEEEEE-EEESCEE
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEe-cCcCHHHHHHHHHHHHHhhcCCCCEEEE-EEcCCCC
Confidence 557888765 457889999999999987654 56899999999999976432 22222 1222332
Q ss_pred CCCCCcEEEEecCCCCHHHHHHhhc--ccc-cCCCCCceEEeecCCCCCCCCCC
Q psy15610 173 DIPHVKHVINFDLPSDVEEYVHRIG--RTG-RMGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 173 dl~~~~~Vi~~~~p~s~~~~~Q~~G--R~~-R~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
-..|+-.|.+.+...+.+..- ++- -.|.+ -++|+..+.++.+..+
T Consensus 111 ----~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKP--KlffiqACRg~~~~~g 158 (272)
T 1m72_A 111 ----LGMLYAKDTHYKPDNLWYYFTADKCPTLAGKP--KLFFIQACQGDRLDGG 158 (272)
T ss_dssp ----TTEEECSSSEECTTHHHHTTSTTTCGGGTTSC--EEEEEESCSSSBCBCC
T ss_pred ----CCEEEecCCcEEHHHHHHHhccccChhhcCCc--eEEEEeCCCCCcccCC
Confidence 134444444445566665552 111 12333 4778888887777543
No 190
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=48.54 E-value=64 Score=22.27 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=39.4
Q ss_pred ceEEEEee------cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 109 ALTLVFVE------TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 109 ~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
.+++||+. .-..|..+..+|...++.+..+.-...++.+..+.+......+.+++
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 57888876 56689999999999999988888776776666665544333344443
No 191
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=48.07 E-value=37 Score=23.07 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccC--CCCCcEEEEecCCCCHHHHHHhhccccc
Q psy15610 127 FLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLD--IPHVKHVINFDLPSDVEEYVHRIGRTGR 201 (237)
Q Consensus 127 ~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvd--l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R 201 (237)
.+....+.+..+.-.||......+.+..++..+.|++.|........ ....+ +..-|.++..+.+++.|+.|
T Consensus 48 ~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~~~~~~~~~~g~~~---yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 48 IARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGYGSKGLDTRYSNIP---LLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp HHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTTCTTSCCSSSCSCS---CBCSSSSHHHHHHHHSTTCS
T ss_pred HHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecCccHHHHHhCCCCc---EEECCCCHHHHHHHHHHHHh
Confidence 34444566666666666555555556665555667776654333221 12222 24568899998888877654
No 192
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=46.87 E-value=11 Score=34.09 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccceeEEeecccchhhHHHHhhhcC------------------------------------CCceeecCCcchhhHHHHh
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHG------------------------------------YPVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~~~~ 99 (237)
+.++|+|++++..++.+++.|.... ..+..+|+.+.+..|..+.
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 4689999999999999999987642 2367788999888887664
Q ss_pred h
Q psy15610 100 Q 100 (237)
Q Consensus 100 ~ 100 (237)
.
T Consensus 332 ~ 332 (715)
T 2va8_A 332 E 332 (715)
T ss_dssp H
T ss_pred H
Confidence 4
No 193
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=46.85 E-value=98 Score=23.91 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=39.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHH-HHHHHHHhh--cCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE-REEALRRFR--SGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 166 (237)
+..+++...+.+.++.+.+.+...+..+..+..+++.++ -++..+... -|.+++||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 455555555566678888888888888888888876544 333333322 27899999753
No 194
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=46.36 E-value=17 Score=23.89 Aligned_cols=36 Identities=8% Similarity=0.317 Sum_probs=29.8
Q ss_pred cccccceeEEeecccchhhHHHHhhhcCCCceeecC
Q psy15610 53 LGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHG 88 (237)
Q Consensus 53 ~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~ 88 (237)
++.+.+++++|.+-......+..|...|++...+.+
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~G 88 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETT
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecC
Confidence 456778999999988888999999999998776644
No 195
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=45.27 E-value=17 Score=31.10 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-cccc--cCCCCCcE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARG--LDIPHVKH 179 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~G--vdl~~~~~ 179 (237)
...+++|.||++.-+.++.+.+... +..+..++|+.+..++ ..+..+|+|+|.- +... ..+.+..+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 3459999999999999888888764 2467888988776543 3567899999943 2221 23445555
Q ss_pred EEE
Q psy15610 180 VIN 182 (237)
Q Consensus 180 Vi~ 182 (237)
||.
T Consensus 229 iIi 231 (510)
T 2oca_A 229 MMN 231 (510)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 196
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=44.83 E-value=30 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=28.5
Q ss_pred CCceEEEEeecccc-hHHHHHHHhhCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVETKKG-ADQLEDFLHHHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~-~~~l~~~L~~~~~-~~~~~h~~~ 142 (237)
+..+++|||.+... +..++..|...|+ ++..+.||+
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 35789999998766 7888888888888 577887764
No 197
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=44.29 E-value=27 Score=30.04 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=49.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
+.++++.|.+...++.+.+.|...++.+...... ..+.. -.+.++...+..|+.+|...+++..+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~--g~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASD--RGRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCT--TCEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCC--CcEEEEEcccccCcccCCCCEEEEEc
Confidence 4689999999999999999999988776544321 11222 35677778899999999988877754
No 198
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=44.12 E-value=28 Score=31.93 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..|+..|.++|.... ..+.++|+||.....++.+..+|...++.+..+++.+....|.....
T Consensus 555 s~K~~~L~~lL~~~~----~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLK----KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp CHHHHHHHHHHHHHT----TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh----hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 346667777776542 23568999999999999999999999999999999999988877644
No 199
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=43.52 E-value=12 Score=33.66 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=36.1
Q ss_pred cccceeEEeecccchhhHHHHhhhc------------------------------CCCceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHH------------------------------GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.+.++|+|++++..++.+++.|... +..+..+|+.+.+..|..+..
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 316 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVED 316 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHH
Confidence 3568999999999999999888653 134667899999988877654
No 200
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=43.00 E-value=16 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=29.2
Q ss_pred CceEEEEeeccc---------chHHHHHHHhhCCCceEEEeCCC
Q psy15610 108 EALTLVFVETKK---------GADQLEDFLHHHGYPVTSIHGDR 142 (237)
Q Consensus 108 ~~~~iIF~~t~~---------~~~~l~~~L~~~~~~~~~~h~~~ 142 (237)
..++++||.+.. .+..++..|...|+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 568999999884 46778888988999999998885
No 201
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=42.78 E-value=47 Score=20.82 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 122 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
..+.++|...++.+..+.-..+++.++...+...
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 8999999999999988888878777776666553
No 202
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=42.57 E-value=96 Score=22.60 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=63.8
Q ss_pred CceEEEEeecc-----------cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC----CCCEEEEcCcccccc
Q psy15610 108 EALTLVFVETK-----------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG----ETPILVATAVAARGL 172 (237)
Q Consensus 108 ~~~~iIF~~t~-----------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gv 172 (237)
.+.+||+.+.. ..++.|++.|...|+.+.. +...+..+-.+.++.|.+. ..+.+++- .++.|.
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~-~lsHG~ 120 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAHRPEHKTSDSTFLV-FMSHGI 120 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTCGGGGGCSCEEEE-EESCBC
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHhhhhcCCCCEEEEE-EecCCC
Confidence 35688888763 4788999999999999765 4568888888888888642 22222111 123333
Q ss_pred CCCCCcEEEEecC------CCCHHHHHHhhccccc---CCCCCceEEeecCCCCCCCCC
Q psy15610 173 DIPHVKHVINFDL------PSDVEEYVHRIGRTGR---MGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 173 dl~~~~~Vi~~~~------p~s~~~~~Q~~GR~~R---~g~~~~~~~~~~~~~~~~~~~ 222 (237)
. ..|.-.|. ..+...++....-... .|.+ -++|+..+.+...++
T Consensus 121 ~----g~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gKP--KlffiqACRg~~~g~ 173 (178)
T 2h54_A 121 R----EGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKP--KVIIIQACRGDSPGV 173 (178)
T ss_dssp S----SCEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTSC--EEEEEESCSSSBCCC
T ss_pred C----CeEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCCc--eEEEEECCCCCCCCC
Confidence 2 11222222 2356667666632221 2333 478888888776554
No 203
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=41.56 E-value=22 Score=28.35 Aligned_cols=38 Identities=11% Similarity=-0.107 Sum_probs=31.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 144 (237)
+..+++++|.+-..+...+..|...|+ ++..+.|++..
T Consensus 253 ~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 253 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp TTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred CCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 457899999998888888888988888 67888887543
No 204
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=40.64 E-value=14 Score=35.00 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=23.4
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCC
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYP 82 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~ 82 (237)
..++|+|++|+..++.++..|...++.
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~ 369 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFN 369 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCC
Confidence 458999999999999999999886654
No 205
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=40.38 E-value=73 Score=20.57 Aligned_cols=79 Identities=10% Similarity=0.138 Sum_probs=44.4
Q ss_pred HHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEcCccccccCCCC----CcEEEEecCCCCHHHHH
Q psy15610 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS----GETPILVATAVAARGLDIPH----VKHVINFDLPSDVEEYV 193 (237)
Q Consensus 122 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gvdl~~----~~~Vi~~~~p~s~~~~~ 193 (237)
....+.+......+.++.-.++.......++.+++ ....|++.|....... ... ++. .+.-|.++..+.
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~--~l~KP~~~~~L~ 113 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDF--YLEKPIDIASLE 113 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSE--EEESSCCHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHH--heeCCCCHHHHH
Confidence 34444455556777777766665555566666554 2456666665433322 111 222 344688999999
Q ss_pred HhhcccccCC
Q psy15610 194 HRIGRTGRMG 203 (237)
Q Consensus 194 Q~~GR~~R~g 203 (237)
+++.++.+.+
T Consensus 114 ~~i~~~~~~~ 123 (127)
T 3i42_A 114 PILQSIEGHH 123 (127)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhhccC
Confidence 9988776544
No 206
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=40.25 E-value=8.8 Score=34.71 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=35.6
Q ss_pred ccceeEEeecccchhhHHHHhhhcC---------------------------------CCceeecCCcchhhHHHHhh
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHG---------------------------------YPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.++|+|++++..++.++..|.... ..+..+|+.+.+..|..+..
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 4689999999999999998886531 23677889999888877644
No 207
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=39.80 E-value=37 Score=26.77 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=31.6
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 34678999999998888888889988985 888988764
No 208
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=39.65 E-value=32 Score=27.16 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=42.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
.+-+|||.++...++.+.+.|..+|+.+..+ ..++..+-.+.++.|...
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~~~-~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQKF-LHLSMHGISQILGQFACM 91 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEEEE-ESCBHHHHHHHHHHHHTC
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEEEe-eCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999999999987654 568999999999998753
No 209
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=39.45 E-value=1.1e+02 Score=22.28 Aligned_cols=107 Identities=12% Similarity=0.208 Sum_probs=62.7
Q ss_pred CceEEEEeec--------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCcccc
Q psy15610 108 EALTLVFVET--------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAAR 170 (237)
Q Consensus 108 ~~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~ 170 (237)
.+.+|||.+. ...++.|.+.|..+|+.+..+ ..++..+-...++.|..... +.+|+ -+++.
T Consensus 44 rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~-~dlt~~em~~~l~~~s~~dh~~~dc~vv-vilSH 121 (173)
T 2ql9_A 44 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVY-NDCSCAKMQDLLKKASEEDHTNAACFAC-ILLSH 121 (173)
T ss_dssp EEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEE-ESCCHHHHHHHHHHHHTSCCTTEEEEEE-EEESC
T ss_pred ceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHHHhhccCCCeEEE-eecCC
Confidence 3567888764 245788999999999988655 56788888888888876542 22211 12222
Q ss_pred ccCCCCCcEEEEecCCCCHHHHHHhh-c-cccc-CCCCCceEEeecCCCCCCCCC
Q psy15610 171 GLDIPHVKHVINFDLPSDVEEYVHRI-G-RTGR-MGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 171 Gvdl~~~~~Vi~~~~p~s~~~~~Q~~-G-R~~R-~g~~~~~~~~~~~~~~~~~~~ 222 (237)
|.. ..|.-.|.+.+...+.... | ++-- .|.+ -++|+.++.+..+..
T Consensus 122 G~~----g~I~g~D~~~~i~~I~~~F~~~~CpsL~gKP--KlFfIQACRG~~~d~ 170 (173)
T 2ql9_A 122 GEE----NVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP--KLFFIQACRGTELDD 170 (173)
T ss_dssp EET----TEEEETTEEEEHHHHHGGGSTTTCGGGTTSC--EEEEEESCCSSBCBC
T ss_pred CCC----CEEEEcCCcEEHHHHHHHcCcccChhHcCCC--eEEEEECCCCCCccC
Confidence 221 2344344334466665554 2 2211 2333 378888888776644
No 210
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=39.35 E-value=16 Score=27.65 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=29.9
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|.++..+.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 4567889999988888888888888866778888753
No 211
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=38.73 E-value=87 Score=20.96 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=35.5
Q ss_pred CceEEEEeec------ccchHHHHHHHhhCCCc-eEEEeCCCCHHHHHHHHHH
Q psy15610 108 EALTLVFVET------KKGADQLEDFLHHHGYP-VTSIHGDRTQKEREEALRR 153 (237)
Q Consensus 108 ~~~~iIF~~t------~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~ 153 (237)
..+++||..+ -..|..+.++|...+++ +..+.=...++.+..+.+.
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~ 71 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 71 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 3689999884 77899999999999995 8888766666666655443
No 212
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=38.58 E-value=82 Score=25.33 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred CceEEEEeec-------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEEEEcCccccc
Q psy15610 108 EALTLVFVET-------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPILVATAVAARG 171 (237)
Q Consensus 108 ~~~~iIF~~t-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~G 171 (237)
.+-+|||.+. ...++.|++.|..+|+.+..+ ..++..+-.+.++.|.... .+.+|+ -.++.|
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~f~~~dh~~~D~~vv-~ilSHG 137 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF-PNLKSEEINKFIQQTAEMDHSDADCLLV-AVLTAG 137 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHSSCGGGBSCEEE-EEEEEE
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHHhccCCCCEEEE-EEeCCC
Confidence 4668888775 456889999999999987654 5689999999999997643 222211 112233
Q ss_pred cCCCCCcEEEEecCCCCHHHHHHhhc--ccc-cCCCCCceEEeecCCCCCCCCC
Q psy15610 172 LDIPHVKHVINFDLPSDVEEYVHRIG--RTG-RMGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 172 vdl~~~~~Vi~~~~p~s~~~~~Q~~G--R~~-R~g~~~~~~~~~~~~~~~~~~~ 222 (237)
. -..|+-.|.+.+...+.+..- ++- -.|.+ -++|+.++++..+..
T Consensus 138 ~----~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKP--KlffiQACRG~~~d~ 185 (310)
T 2nn3_C 138 E----LGMLYAKDTHYKPDNLWYYFTADKCPTLAGKP--KLFFIQACQGDRLDG 185 (310)
T ss_dssp E----TTEEECSSCEECTHHHHGGGSTTTCGGGTTSC--EEEEEEEECCCCCCC
T ss_pred C----CCEEEecCCcEEHHHHHHHhccccChhhcCCc--eEEEEecccCCcccc
Confidence 2 134444444445666666552 111 12333 477788777776644
No 213
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=38.49 E-value=1.2e+02 Score=29.14 Aligned_cols=49 Identities=20% Similarity=0.025 Sum_probs=39.8
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT 165 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 165 (237)
..+.+++|.+|++.-+.++.+.+......+..++|+++ .++..+|+|+|
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~T 273 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMT 273 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeC
Confidence 45678999999999999999988876558889999876 23567888888
No 214
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=37.72 E-value=24 Score=30.05 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=39.8
Q ss_pred cccceeEEeecccchhhHHHHhhhc-CCCceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.+.++|+|+.+...++.+...|... +..+..+++.+.+..|.....
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHH
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHH
Confidence 4568999999999999999999885 999999999998888776643
No 215
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=37.67 E-value=79 Score=20.20 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=35.8
Q ss_pred CceEEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHh
Q psy15610 108 EALTLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRF 154 (237)
Q Consensus 108 ~~~~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 154 (237)
..++.||+ ++-..|..+..+|.+.++.+..+.-...++.++...+..
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~ 62 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARA 62 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 45677775 557789999999999999998888877776666555443
No 216
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=37.63 E-value=1.1e+02 Score=21.91 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=58.1
Q ss_pred ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEEEEcCccccccCCCCCcEEEEecC-CCCHHHHH
Q psy15610 118 KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPILVATAVAARGLDIPHVKHVINFDL-PSDVEEYV 193 (237)
Q Consensus 118 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gvdl~~~~~Vi~~~~-p~s~~~~~ 193 (237)
...++.+.+.|..+|+.+.. +...+..+-.+.++.|.... ...+|+. +++.|.. ..|+-.|. +.+...+.
T Consensus 54 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~dh~~~dc~vv~-ilSHG~~----g~i~g~D~~~v~i~~i~ 127 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQLMDHSNMDCFICC-ILSHGDK----GIIYGTDGQEAPIYELT 127 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHHSCCTTCSCEEEE-EESCEET----TEEECTTSCEEEHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHHhhccCCCEEEEE-eCCCCCC----CEEEeeCCCEeeHHHHH
Confidence 34678889999999998754 56688888888888886543 2222211 2223321 34444443 24566666
Q ss_pred Hhh-c-cccc-CCCCCceEEeecCCCCCCCCCC
Q psy15610 194 HRI-G-RTGR-MGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 194 Q~~-G-R~~R-~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
... | ++-- .|.+ -++|+.++.+..+..+
T Consensus 128 ~~F~~~~CpsL~gKP--KlFfiQACRG~~~d~g 158 (164)
T 1qtn_A 128 SQFTGLKCPSLAGKP--KVFFIQACQGDNYQKG 158 (164)
T ss_dssp GGGSTTTCGGGTTSC--EEEEEESCSSSBCBCC
T ss_pred HHhccccChhhcCCC--eEEEEECCCCCCccCC
Confidence 555 2 1211 2333 3788888887666544
No 217
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=37.09 E-value=75 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=31.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHH
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 149 (237)
...+-||++.. .+.+.+.....+..+..+||..+++.-..
T Consensus 53 ~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~~~~ 92 (203)
T 1v5x_A 53 VVRVGVFRDQP--PEEVLRLMEEARLQVAQLHGEEPPEWAEA 92 (203)
T ss_dssp SEEEEEESSCC--HHHHHHHHHHTTCSEEEECSCCCHHHHHH
T ss_pred CCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHHHHH
Confidence 35677888764 57788888888999999999988865544
No 218
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=36.68 E-value=1e+02 Score=24.17 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=64.8
Q ss_pred CCceEEEEee---------------------cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEE
Q psy15610 107 DEALTLVFVE---------------------TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPIL 162 (237)
Q Consensus 107 ~~~~~iIF~~---------------------t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vl 162 (237)
+.+-+|||.+ +...++.|++.|...|+.+.. +..++..+-.+.++.|.... .+.+
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~~h~~~d~~ 94 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQLMDHSNMDCF 94 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHHSCCTTCSCE
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHhcCCCCCEE
Confidence 3467888887 335688999999999998764 46789999999999887542 2222
Q ss_pred EEcCccccccCCCCCcEEEEecC-CCCHHHHHHhhc-c-ccc-CCCCCceEEeecCCCCCCCCC
Q psy15610 163 VATAVAARGLDIPHVKHVINFDL-PSDVEEYVHRIG-R-TGR-MGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 163 v~T~~~~~Gvdl~~~~~Vi~~~~-p~s~~~~~Q~~G-R-~~R-~g~~~~~~~~~~~~~~~~~~~ 222 (237)
++- .++.|.. ..|+-.|. +.+...+.+... . +-- .|.+ -++|+.++.++.+..
T Consensus 95 v~~-ilSHG~~----g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKP--KlffiQACRG~~~~~ 151 (271)
T 3h11_B 95 ICC-ILSHGDK----GIIYGTDGQEAPIYELTSQFTGLKCPSLAGKP--KVFFIQACQGDNYQK 151 (271)
T ss_dssp EEE-EESCEET----TEEECTTSCEEEHHHHHGGGSTTTCGGGTTSC--EEEEEESCCSSBCC-
T ss_pred EEE-EEcCCcC----CEEEecCCCeecHHHHHHHhhhccChhhcCCc--cEEEEeccCCCcccC
Confidence 110 1223332 34444443 234566666552 1 111 2333 378888888777653
No 219
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=36.13 E-value=96 Score=20.73 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=35.0
Q ss_pred CceEEEEeec------ccchHHHHHHHhhCCCc---eEEEeCCCCHHHHHHHHHHh
Q psy15610 108 EALTLVFVET------KKGADQLEDFLHHHGYP---VTSIHGDRTQKEREEALRRF 154 (237)
Q Consensus 108 ~~~~iIF~~t------~~~~~~l~~~L~~~~~~---~~~~h~~~~~~~r~~~~~~f 154 (237)
..+++||..+ -..|..+.++|...++. +..+.-...++.+..+.+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s 70 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS 70 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh
Confidence 5789999884 67899999999999887 66666666666655554443
No 220
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=34.88 E-value=31 Score=22.55 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=30.2
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeecCCc
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 90 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (237)
+.+.+++++|.+-......+..|...|+++..+.+.+
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 4567899999998888899999999999767666544
No 221
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=34.66 E-value=35 Score=28.55 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=31.2
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCCH
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRTQ 144 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 144 (237)
.+..++++||.+-..+...+..|...|+ ++..+.|+++.
T Consensus 201 ~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 201 RHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 3467899999988888888888888888 58888888643
No 222
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=34.65 E-value=19 Score=28.40 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=32.6
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
.+..++++||.+-..+...+.+|...|+ ++..+.||+.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567899999999999999999999998 5888888864
No 223
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=34.57 E-value=42 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCceEEEEeecccchHHHHHHHhh-CCCc-eEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH-HGYP-VTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~-~~~~-~~~~h~~~ 142 (237)
+..++++||.+-..+...+..|.. .|+. +..+.|++
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 457899999998888888888875 7884 88888875
No 224
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.51 E-value=98 Score=20.33 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEcCcccccc---CCCCCcEEEEecCCCCHHHHHH
Q psy15610 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS----GETPILVATAVAARGL---DIPHVKHVINFDLPSDVEEYVH 194 (237)
Q Consensus 122 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gv---dl~~~~~Vi~~~~p~s~~~~~Q 194 (237)
....+.+......+.++.-.++.......++.+++ ....|++.|....... ..-.....-.+.-|.+...+.+
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~ 119 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLIL 119 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHH
Confidence 33344455556777777766666556666666654 3456776665432111 1111222223446788888888
Q ss_pred hhccccc
Q psy15610 195 RIGRTGR 201 (237)
Q Consensus 195 ~~GR~~R 201 (237)
++.++-+
T Consensus 120 ~i~~~l~ 126 (140)
T 3grc_A 120 SLHRAID 126 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 225
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=34.27 E-value=1e+02 Score=24.59 Aligned_cols=109 Identities=11% Similarity=0.181 Sum_probs=64.9
Q ss_pred CceEEEEeec--------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEEEEcCcccc
Q psy15610 108 EALTLVFVET--------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPILVATAVAAR 170 (237)
Q Consensus 108 ~~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~ 170 (237)
.+-+||+.+. ...++.|++.|...|+.+..+ ..++..+-.+.++.|.... .+++++ -.++.
T Consensus 69 rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~~~~~~h~~~d~~vv-~ilsH 146 (305)
T 1f1j_A 69 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVY-NDCSCAKMQDLLKKASEEDHTNAACFAC-ILLSH 146 (305)
T ss_dssp EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEE-ESCCHHHHHHHHHHHHHSCGGGEEEEEE-EEESC
T ss_pred CCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEe-cCcCHHHHHHHHHHHHHhhcCCCCEEEE-EEecC
Confidence 3567888764 246888999999999987654 5688888888888887543 222222 12233
Q ss_pred ccCCCCCcEEEEecCCCCHHHHHHhhc--cccc-CCCCCceEEeecCCCCCCCCCCC
Q psy15610 171 GLDIPHVKHVINFDLPSDVEEYVHRIG--RTGR-MGNLDFPFSYNQPGYGGSYGGSS 224 (237)
Q Consensus 171 Gvdl~~~~~Vi~~~~p~s~~~~~Q~~G--R~~R-~g~~~~~~~~~~~~~~~~~~~~~ 224 (237)
|.. ..|+-.|.......+.+..- ++-- .|. --++|+..+.+..+..+.
T Consensus 147 G~~----~~i~g~D~~v~l~~I~~~f~~~~CpsL~gK--PKlffiQACRG~~~~~g~ 197 (305)
T 1f1j_A 147 GEE----NVIYGKDGVTPIKDLTAHFRGDRSKTLLEK--PKLFFIQACRGTELDDGI 197 (305)
T ss_dssp EET----TEEECSSSEEEHHHHHHTTSTTTCGGGTTS--CEEEEEESCCSSBCBCCB
T ss_pred CCC----CeEEecCCeEEHHHHHHHhhhccChhhcCC--ceEEEeccccCCcccCCc
Confidence 332 23444443334555655442 1111 222 347888888887775543
No 226
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=34.15 E-value=99 Score=20.28 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=44.0
Q ss_pred HHHHHHhh-CCCceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEc-CccccccCCCCCcEEEEecCCCCHHHHHHhhcc
Q psy15610 123 QLEDFLHH-HGYPVTSIHGDRTQKEREEALRRFRSG--ETPILVAT-AVAARGLDIPHVKHVINFDLPSDVEEYVHRIGR 198 (237)
Q Consensus 123 ~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T-~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR 198 (237)
.....+.. ....+.++.-.++.......++.+++. ...+++.| ....... .... ..-.+.-|.+...+.+++.+
T Consensus 50 ~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~ 127 (138)
T 2b4a_A 50 AFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH-NLSYLQKPFAISELRAAIDY 127 (138)
T ss_dssp HHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHH
Confidence 33344444 456777777666655555666666643 35566666 5443332 2222 22334568889999998877
Q ss_pred ccc
Q psy15610 199 TGR 201 (237)
Q Consensus 199 ~~R 201 (237)
+-+
T Consensus 128 ~~~ 130 (138)
T 2b4a_A 128 HKP 130 (138)
T ss_dssp TCC
T ss_pred HHH
Confidence 654
No 227
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=33.82 E-value=54 Score=26.23 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=28.4
Q ss_pred CCceEEEEeeccc-chHHHHHHHhhCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVETKK-GADQLEDFLHHHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~-~~~~~h~~~ 142 (237)
+..+++|||.+.. .+...+..|...|+ ++..+.|++
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 4678999998866 67788888888888 488888764
No 228
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=33.78 E-value=18 Score=19.83 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=16.5
Q ss_pred EeCCCCHHHHHHHHHHhhc
Q psy15610 138 IHGDRTQKEREEALRRFRS 156 (237)
Q Consensus 138 ~h~~~~~~~r~~~~~~f~~ 156 (237)
.||+|+..+.++..+.|-.
T Consensus 4 ~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHH
Confidence 5899999999999998853
No 229
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.55 E-value=97 Score=19.99 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=38.5
Q ss_pred HHHHhhC-CCceEEEeCCCCH-HHHHHHHHHhhc--CCCCEEEEcCcc-----ccccCCCCCcEEEEecCCCCHHHHHHh
Q psy15610 125 EDFLHHH-GYPVTSIHGDRTQ-KEREEALRRFRS--GETPILVATAVA-----ARGLDIPHVKHVINFDLPSDVEEYVHR 195 (237)
Q Consensus 125 ~~~L~~~-~~~~~~~h~~~~~-~~r~~~~~~f~~--g~~~vlv~T~~~-----~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~ 195 (237)
.+.+... ...+.++.-.++. ......++.++. ....+++.|... ..++.. . -.+.-|.+...+.++
T Consensus 42 ~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~---~--~~l~kP~~~~~l~~~ 116 (132)
T 2rdm_A 42 IEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD---S--IILEKPFTSAQLITA 116 (132)
T ss_dssp HHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---C--EEEESSCCHHHHHHH
T ss_pred HHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---c--ceEeCCCCHHHHHHH
Confidence 3344443 4566666655543 333334444332 245566555332 222222 1 134468889999888
Q ss_pred hcccccCC
Q psy15610 196 IGRTGRMG 203 (237)
Q Consensus 196 ~GR~~R~g 203 (237)
+.++.+.+
T Consensus 117 i~~~~~~~ 124 (132)
T 2rdm_A 117 VSQLLNAR 124 (132)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 88776654
No 230
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=33.47 E-value=25 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=29.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~ 142 (237)
+..++++||.+-..+...+..|...|+. +..+.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 4567899999988888888888888884 78888875
No 231
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.28 E-value=98 Score=19.98 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=60.9
Q ss_pred hhhHHHHhhhcCCCceeecCC--cchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHH
Q psy15610 69 ADQLEDFLHHHGYPVTSIHGD--RTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE 146 (237)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 146 (237)
+..+..-....|+.+...... +...... ........+++|..+......++-+++.+.|+.+..+--+.+..+
T Consensus 15 ikkikkevenqgyqvrdvndsdelkkemkk-----laeeknfekiliisndkqllkemlelisklgykvflllqdqdene 89 (134)
T 2lci_A 15 IKKIKKEVENQGYQVRDVNDSDELKKEMKK-----LAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENE 89 (134)
T ss_dssp HHHHHHHTTTTTCEEEEECSHHHHHHHHHH-----HHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHH
T ss_pred HHHHHHHHHccCeeeeecCchHHHHHHHHH-----HHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhH
Confidence 445555666677766544321 1111111 112234568899999988899999999999999998888888777
Q ss_pred HHHHHHHhhcCCCCEEEEcC
Q psy15610 147 REEALRRFRSGETPILVATA 166 (237)
Q Consensus 147 r~~~~~~f~~g~~~vlv~T~ 166 (237)
-+.--+...+....|--.|+
T Consensus 90 leefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 90 LEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHhCCeeeeecCC
Confidence 77666666666666655554
No 232
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.20 E-value=65 Score=21.39 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEcCccc---cccCCCCCcEEEEecCCCCHHHHHHhhc
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG--ETPILVATAVAA---RGLDIPHVKHVINFDLPSDVEEYVHRIG 197 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~---~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~G 197 (237)
..-..+......+.++.-.++.......++.++.. ...|++.|.... ..+.. .++.+ +.-|.+...+.+++.
T Consensus 46 ~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~-g~~~~--l~KP~~~~~l~~~i~ 122 (143)
T 2qv0_A 46 DVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFEL-EAFDY--ILKPYQESRIINMLQ 122 (143)
T ss_dssp HHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCTTHHHHHHT-TCSEE--EESSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHHHHHHHHhC-CcceE--EeCCCCHHHHHHHHH
Confidence 33344444556777776666554445555555542 233555554311 11111 12222 334778888877776
Q ss_pred cccc
Q psy15610 198 RTGR 201 (237)
Q Consensus 198 R~~R 201 (237)
++-+
T Consensus 123 ~~~~ 126 (143)
T 2qv0_A 123 KLTT 126 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 233
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=32.53 E-value=54 Score=27.43 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~ 142 (237)
+..++++||.+-..+...+..|...|+ ++..+.|++
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 357899999999888888889999998 588888875
No 234
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=32.25 E-value=19 Score=24.12 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=28.1
Q ss_pred ceEEEEeecccchHHHHHHHhhC------C-CceEEEeCCCCH
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHH------G-YPVTSIHGDRTQ 144 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~------~-~~~~~~h~~~~~ 144 (237)
.+++++|.+-..+...+..|... | .++..+.|++..
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 48999999988888888888877 3 467888887643
No 235
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=31.97 E-value=90 Score=21.71 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHH----HHHHHHhhcCCCCEEEEcCcc
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKER----EEALRRFRSGETPILVATAVA 168 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r----~~~~~~f~~g~~~vlv~T~~~ 168 (237)
..+++|++.|+++..+..-. ...+ ..+.+.+++|+++.+|-|...
T Consensus 58 GTa~~L~~~Gi~v~~v~k~~-egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 58 ATSDWLNANNVPATPVAWPS-QEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHHHHHTTCCCEEECCGG-GC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred hHHHHHHHcCCeEEEEEecc-CCCcccccccHHHHHHCCCceEEEECCCC
Confidence 34566777788887775321 1102 368888999999988887643
No 236
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=31.13 E-value=54 Score=25.28 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=28.3
Q ss_pred CCceEEEEeeccc-chHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKK-GADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+...++|+|.+.. .+..++..|...|+ ++..+.||+.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3567888998766 67788888888888 4778887743
No 237
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=31.10 E-value=1.5e+02 Score=21.57 Aligned_cols=79 Identities=8% Similarity=-0.025 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc---CCCCEEEEcCccc-----cccCCCCCcEEEEecCCCCHHHHH
Q psy15610 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS---GETPILVATAVAA-----RGLDIPHVKHVINFDLPSDVEEYV 193 (237)
Q Consensus 122 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~-----~Gvdl~~~~~Vi~~~~p~s~~~~~ 193 (237)
+.+...+....+.+.++.-.|+........+.++. ....|++.|.... .++... ..-.+.-|.++..+.
T Consensus 44 ~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~G---a~~~l~Kp~~~~~L~ 120 (225)
T 3klo_A 44 WLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNN---LAGVFYIDDDMDTLI 120 (225)
T ss_dssp HHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTT---EEEEEETTCCHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhC---CCEEEecCCCHHHHH
Confidence 33333344455677888878887777777777665 3456666653322 222222 222344688899999
Q ss_pred HhhcccccCC
Q psy15610 194 HRIGRTGRMG 203 (237)
Q Consensus 194 Q~~GR~~R~g 203 (237)
.++.++.+.+
T Consensus 121 ~~i~~~~~~~ 130 (225)
T 3klo_A 121 KGMSKILQDE 130 (225)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 8887766543
No 238
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=30.73 E-value=1e+02 Score=19.27 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=37.3
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS 156 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 156 (237)
+++-+++|.+.+.+..+...++-++..+.+..-. -.+|.+-.+.++.|.+
T Consensus 49 sqnikvlilvsndeeldkakelaqkmeidvrtrk-vtspdeakrwikefse 98 (110)
T 2kpo_A 49 SQNIKVLILVSNDEELDKAKELAQKMEIDVRTRK-VTSPDEAKRWIKEFSE 98 (110)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEE-CSSHHHHHHHHHHHHH
T ss_pred ccCeEEEEEEcChHHHHHHHHHHHhhceeeeeee-cCChHHHHHHHHHHhh
Confidence 3456899999999988888887777777665433 3567777888888875
No 239
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=30.22 E-value=40 Score=26.19 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=36.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhCC----CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHG----YPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
...+++|.++++..+.++.+.+.+.+ ..+..++++.+..+ -..+...|+|+|.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 34589999999998888888776643 35566666654322 1224578999984
No 240
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=30.12 E-value=83 Score=23.51 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=29.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHH
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKERE 148 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 148 (237)
...+-||++.. .+.+.+.....+..+..+||..+++.-.
T Consensus 54 ~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~~~ 92 (205)
T 1nsj_A 54 VFRVGVFVNEE--PEKILDVASYVQLNAVQLHGEEPIELCR 92 (205)
T ss_dssp SEEEEEESSCC--HHHHHHHHHHHTCSEEEECSCCCHHHHH
T ss_pred CCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHHHH
Confidence 35677888764 5777777777789999999998886543
No 241
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=28.52 E-value=1.7e+02 Score=21.33 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=60.5
Q ss_pred CceEEEEeecc--------------cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---C--EEEEcCcc
Q psy15610 108 EALTLVFVETK--------------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---P--ILVATAVA 168 (237)
Q Consensus 108 ~~~~iIF~~t~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~--vlv~T~~~ 168 (237)
.+-+|||.+.. ..++.+.+.|..+|+.+..+. .++..+-.+.++.|..... . +++--.-+
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~-dlt~~em~~~l~~~~~~dh~~~dc~vvvilSHG 122 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN-DLKAEELLLKIHEVSTVSHADADCFVCVFLSHG 122 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHTSCCTTBSCEEEEEESCE
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHhhhhcCCCCEEEEEEeccC
Confidence 46688988753 368899999999999987665 6899998888888876432 2 21111222
Q ss_pred ccccCCCCCcEEEEecCCCCHHHHHHhhc--cccc-CCCCCceEEeecCCCCCCCCCCCCC
Q psy15610 169 ARGLDIPHVKHVINFDLPSDVEEYVHRIG--RTGR-MGNLDFPFSYNQPGYGGSYGGSSSQ 226 (237)
Q Consensus 169 ~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~G--R~~R-~g~~~~~~~~~~~~~~~~~~~~~~~ 226 (237)
.. ..|.-.|...+...+.+..- ++-- .|.+ -++|+.++.+..+..+...
T Consensus 123 ~~-------g~I~g~D~~v~l~~I~~~F~~~~CpsL~gKP--KlFfIQACRG~~~d~Gv~~ 174 (179)
T 3p45_A 123 EG-------NHIYAYDAKIEIQTLTGLFKGDKCHSLVGKP--KIFIIQACRGNQHDVPVIP 174 (179)
T ss_dssp ET-------TEEECSSSEEEHHHHHGGGSGGGCGGGTTSC--EEEEEECC-----------
T ss_pred CC-------CEEEEECCEEEHHHHHHhcccccChhhCCCC--cEEEEECCCCCCCCCCccC
Confidence 22 23444444345666666553 2211 2333 3788888888776655443
No 242
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=28.10 E-value=1.3e+02 Score=19.72 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEcCcccc-----ccCCCCCcEEEEecCCCCHHHHH
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS----GETPILVATAVAAR-----GLDIPHVKHVINFDLPSDVEEYV 193 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~-----Gvdl~~~~~Vi~~~~p~s~~~~~ 193 (237)
..-+.+......+.++.-.++.......++.++. ....|++.|..... .+... ++. .+.-|.+...+.
T Consensus 37 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g-~~~--~l~KP~~~~~l~ 113 (140)
T 3n53_A 37 EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSG-ADD--YLTKPFNRNDLL 113 (140)
T ss_dssp HHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCC-CSE--EEESSCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcC-CCe--eeeCCCCHHHHH
Confidence 3334444446778888877777776667676664 34567766644322 22222 222 233588889888
Q ss_pred Hhhccccc
Q psy15610 194 HRIGRTGR 201 (237)
Q Consensus 194 Q~~GR~~R 201 (237)
+++.++-+
T Consensus 114 ~~i~~~~~ 121 (140)
T 3n53_A 114 SRIEIHLR 121 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88876644
No 243
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=27.87 E-value=57 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCceEEEEeeccc-chHHHHHHHhhCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVETKK-GADQLEDFLHHHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~-~~~~~h~~~ 142 (237)
+..++++||.+.. .+...+..|...|+ ++..+.|++
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 3577889998865 56777888888887 477787764
No 244
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=27.77 E-value=2.2e+02 Score=22.28 Aligned_cols=107 Identities=14% Similarity=0.220 Sum_probs=65.6
Q ss_pred CceEEEEeecc--------------cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEEEEcCcccc
Q psy15610 108 EALTLVFVETK--------------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPILVATAVAAR 170 (237)
Q Consensus 108 ~~~~iIF~~t~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~ 170 (237)
.+-+|||++.. ..++.|++.|...|+.+..+ ..++..+-.+.++.|.... .+.+|+- .++.
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~~~~~~h~~~d~~vv~-ilSH 98 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTVSHADADCFVCV-FLSH 98 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHHSCCTTBSCEEEE-EESC
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHhhcccCCCEEEEE-EECC
Confidence 46688988853 46889999999999997655 5789988888888887542 2222111 1222
Q ss_pred ccCCCCCcEEEEecCCCCHHHHHHhhcccc-c--CCCCCceEEeecCCCCCCCCC
Q psy15610 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTG-R--MGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 171 Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~-R--~g~~~~~~~~~~~~~~~~~~~ 222 (237)
|.. ..|+-.|...+...+.+..--.. . .|.+ -++|+.+++++.+..
T Consensus 99 G~~----g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKP--KlffiQACRG~~~~~ 147 (278)
T 3od5_A 99 GEG----NHIYAYDAKIEIQTLTGLFKGDKCHSLVGKP--KIFIIQACRGNQHDV 147 (278)
T ss_dssp EET----TEEECSSSEEEHHHHHHTTSTTTCGGGTTSC--EEEEEESCCSSBCBC
T ss_pred CCC----CEEEEeCCeEEHHHHHHHhccccChhhcCCC--cEEEEecCCCCcccC
Confidence 321 23443343345666666653111 1 2333 478888888877654
No 245
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=27.54 E-value=94 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=27.5
Q ss_pred CCceEEEEe-ecccch-HHHHHHHhhCCCceEEEeCCCCH
Q psy15610 107 DEALTLVFV-ETKKGA-DQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~-~t~~~~-~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
+..+++||| .+-... ...+..|...|+++..+.||+..
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~a 133 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQA 133 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHH
Confidence 356789999 444334 36777788888888899998743
No 246
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=27.39 E-value=36 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.2
Q ss_pred CceEEEEeecccch---------HHHHHHHhhCCCceEEEeCCC
Q psy15610 108 EALTLVFVETKKGA---------DQLEDFLHHHGYPVTSIHGDR 142 (237)
Q Consensus 108 ~~~~iIF~~t~~~~---------~~l~~~L~~~~~~~~~~h~~~ 142 (237)
..++++||.+...+ ..+...|...|+++..+.||+
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 36799999887653 456777888888888998875
No 247
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=27.20 E-value=1.2e+02 Score=19.81 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=38.7
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHhhc------CCCCEEEEcCcccc-----ccCCCCCcEEEEecCCCCHHHHHHhhccc
Q psy15610 131 HGYPVTSIHGDRTQKEREEALRRFRS------GETPILVATAVAAR-----GLDIPHVKHVINFDLPSDVEEYVHRIGRT 199 (237)
Q Consensus 131 ~~~~~~~~h~~~~~~~r~~~~~~f~~------g~~~vlv~T~~~~~-----Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~ 199 (237)
....+.++.-.++.......++.+++ ....+++.|..... .+....++. .+.-|.+...+.+++.++
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~--~l~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDY--YVSKPLTANALNNLYNKV 136 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCE--EECSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcce--eeeCCCCHHHHHHHHHHH
Confidence 45667777766665555555555443 34556666543221 122221222 244688899998888776
Q ss_pred ccCC
Q psy15610 200 GRMG 203 (237)
Q Consensus 200 ~R~g 203 (237)
...+
T Consensus 137 ~~~~ 140 (146)
T 3ilh_A 137 LNEG 140 (146)
T ss_dssp HCC-
T ss_pred HHhc
Confidence 6543
No 248
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=26.93 E-value=1e+02 Score=18.15 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=35.3
Q ss_pred EEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 111 TLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 111 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
+++|. +.-..|+.+..+|...++.+..+.-...+..+....+.+....+.+++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 45665 345789999999988888888777665555555555555555555554
No 249
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=26.85 E-value=62 Score=22.38 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=28.4
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCC-ceeecCCc
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDR 90 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~-~~~~~~~~ 90 (237)
+.+.+++++|.+-......+..|...|+. +..+.+.+
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 115 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGF 115 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCCh
Confidence 45678999999988888899999999995 66776654
No 250
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=26.32 E-value=2.2e+02 Score=21.86 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=37.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHH-HHHHHHHHhh--cCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQK-EREEALRRFR--SGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~-~r~~~~~~f~--~g~~~vlv~T~ 166 (237)
+.++++...+.+.+++..+.+...+..+..+..+++.+ +.++.++... -|.+++||..-
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 44444443444556677777877787888888887654 3444444433 26899999853
No 251
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=25.52 E-value=1.2e+02 Score=18.48 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=38.1
Q ss_pred eEEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 110 LTLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 110 ~~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
++++|. ++-..|+.+..+|...++.+..+.-...+..+....+.+....+.+++
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~ 61 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 566775 446789999999999999888887766666666565555544555543
No 252
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=25.24 E-value=1.6e+02 Score=22.81 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=38.2
Q ss_pred ceEEEEeec-------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 109 ALTLVFVET-------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 109 ~~~iIF~~t-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
+-+|||.+. ...++.|++.|...|+.+.. +..++..+-.+.++.|...
T Consensus 21 g~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 21 GMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTV-YKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp EEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHHHHTS
T ss_pred cEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHh
Confidence 457888774 35788999999999999764 4578999999999999864
No 253
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=25.23 E-value=81 Score=24.34 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.2
Q ss_pred CCceEEEEeeccc-chHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKK-GADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+..+++|||.+.. .+..++..|...|+ ++..+.|++.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 3567889998753 46677778888888 5788888743
No 254
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.75 E-value=2.3e+02 Score=21.43 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=49.6
Q ss_pred ceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEE
Q psy15610 58 LTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTS 137 (237)
Q Consensus 58 ~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~ 137 (237)
.+++.-++..=-..+++.|... +.++++...+...++.+.+.+...+..+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~----------------------------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQ----------------------------GADLVLAARTVERLEDVAKQVTDTGRRALS 64 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHT----------------------------TCEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHC----------------------------cCEEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 3555555555566777777666 445555555556666777777666767777
Q ss_pred EeCCCCHHH-HHHHHHHhh--cCCCCEEEEcC
Q psy15610 138 IHGDRTQKE-REEALRRFR--SGETPILVATA 166 (237)
Q Consensus 138 ~h~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 166 (237)
+..+++..+ -.+.++... -|.+++||..-
T Consensus 65 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 65 VGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp EECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 777766543 333333332 26788888753
No 255
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=24.48 E-value=80 Score=24.83 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=35.5
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+..|||.++..+++.+.+.|...||.+.....-..+.....+..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~ 87 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQ 87 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHH
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHH
Confidence 5677899999998999999999999998877665555555544444
No 256
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.73 E-value=1.6e+02 Score=19.23 Aligned_cols=79 Identities=16% Similarity=-0.008 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEcCcccccc--CCCCCcEEEEecCCCCHHHHHHhh
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS----GETPILVATAVAARGL--DIPHVKHVINFDLPSDVEEYVHRI 196 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gv--dl~~~~~Vi~~~~p~s~~~~~Q~~ 196 (237)
...+.+......+.++.-.++.......++.++. ....|++.|....... ..-..-..-.+..|.+...+.+++
T Consensus 42 ~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 121 (142)
T 3cg4_A 42 QCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKT 121 (142)
T ss_dssp HHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHH
Confidence 3344445555667777766654444555555554 2355666664432221 111122233445688888888877
Q ss_pred ccccc
Q psy15610 197 GRTGR 201 (237)
Q Consensus 197 GR~~R 201 (237)
.++-+
T Consensus 122 ~~~~~ 126 (142)
T 3cg4_A 122 TFFMG 126 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 257
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=23.60 E-value=1.1e+02 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCceEEEEeec--cc-chHHHHHHHhhCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVET--KK-GADQLEDFLHHHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t--~~-~~~~l~~~L~~~~~-~~~~~h~~~ 142 (237)
+..+++|||.+ .. .+..++..|...|+ ++..+.||+
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 45678999987 43 36677888888887 577888764
No 258
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=23.38 E-value=1.1e+02 Score=24.93 Aligned_cols=50 Identities=6% Similarity=0.061 Sum_probs=36.2
Q ss_pred ceEEEEeecccchHHHHHHHhhCCCceE-EEeCCCCHHHHHHHHHHhhcCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGYPVT-SIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
.-++||++-....+.+.+.+.+.|++.. ++..+++..+..++.+.-++..
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g 131 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKG 131 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 5578888887777888888877788655 4588999877666666555433
No 259
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=23.31 E-value=1.1e+02 Score=23.83 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=25.3
Q ss_pred cchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhh
Q psy15610 67 KGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYT 102 (237)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (237)
..++.+.+.|...||.+.....-..+.....+..+.
T Consensus 49 ~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 84 (271)
T 3h11_B 49 LDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQ 84 (271)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 348889999999999987766555555555554433
No 260
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=23.24 E-value=46 Score=28.75 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=32.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..++++||.+-..+...+..|...|+++..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 4568999999988899999999999998888888764
No 261
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=22.78 E-value=63 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeC-CC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHG-DR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~-~~ 142 (237)
+..+++++|.+...+...+.+|...|+.+..+.| ++
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~ 357 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 357 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCCh
Confidence 3578999999988888888899999999888998 75
No 262
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=22.22 E-value=1.7e+02 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=22.0
Q ss_pred chhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 68 GADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 68 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.++.+.+.|...||.+....-...+........
T Consensus 42 D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~ 74 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMRD 74 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHH
Confidence 477888899999888766655544444444433
No 263
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.09 E-value=1.5e+02 Score=18.44 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=35.4
Q ss_pred HHHhhCCCceEEEeCCCCHHHHHHHHHHhhc--CCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhccc
Q psy15610 126 DFLHHHGYPVTSIHGDRTQKEREEALRRFRS--GETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRT 199 (237)
Q Consensus 126 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~ 199 (237)
+.+......+.++.-.++........+.+++ ....+++.|.........-.....-...-|.+...+.+++.++
T Consensus 39 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 39 KKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchHHHHHhccccceEECCCCHHHHHHHHHHH
Confidence 3444445667776665554444444444442 3456666554322211111111111223577778777776554
No 264
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=21.79 E-value=83 Score=23.56 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=18.0
Q ss_pred cccceeEEeecccchhhHHHHhhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
++.++++||+|..... +++++..
T Consensus 207 ~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 207 PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred CCCeEEEEecCCCHHH-HHHHcCC
Confidence 4678999999988765 7787754
No 265
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=21.53 E-value=2.5e+02 Score=21.25 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=19.3
Q ss_pred eeEEeeccc-chhhHHHHhhhcCCCceeecCCc
Q psy15610 59 TLVFVETKK-GADQLEDFLHHHGYPVTSIHGDR 90 (237)
Q Consensus 59 ~i~f~~t~~-~~~~~~~~l~~~~~~~~~~~~~~ 90 (237)
.|++..... ......+.+...++++..+....
T Consensus 72 giii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 104 (304)
T 3gbv_A 72 GVMFAPTVPQYTKGFTDALNELGIPYIYIDSQI 104 (304)
T ss_dssp EEEECCSSGGGTHHHHHHHHHHTCCEEEESSCC
T ss_pred EEEECCCChHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 445544433 34566667777788877776544
No 266
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=21.34 E-value=84 Score=21.91 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=25.1
Q ss_pred CCceEEEEee-cccchHHHHHHH--------hhCCC-ceEEEeCCCCH
Q psy15610 107 DEALTLVFVE-TKKGADQLEDFL--------HHHGY-PVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~-t~~~~~~l~~~L--------~~~~~-~~~~~h~~~~~ 144 (237)
+..++++||. +.......+..| ...|+ ++..+.||+..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 4567888898 655544444444 34687 68888999754
No 267
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.88 E-value=2.5e+02 Score=21.59 Aligned_cols=30 Identities=3% Similarity=-0.128 Sum_probs=14.9
Q ss_pred EEEEeecccchHHH---HHHHhhCCCceEEEeC
Q psy15610 111 TLVFVETKKGADQL---EDFLHHHGYPVTSIHG 140 (237)
Q Consensus 111 ~iIF~~t~~~~~~l---~~~L~~~~~~~~~~h~ 140 (237)
.++++++....+.. .+.|........++.+
T Consensus 45 ~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 45 EFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 45667766544433 3333344555555544
No 268
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.87 E-value=2.4e+02 Score=22.14 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCc--------------eEEEEeecccchHHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEA--------------LTLVFVETKKGADQL 124 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~iIF~~t~~~~~~l 124 (237)
.|++++.......+.+.+...++++..+....... . -.-|-++.......+
T Consensus 65 giIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a 129 (350)
T 3h75_A 65 YLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLD---------------QRELIGQSRQNYSDWIGSMVGDDEEAGYRM 129 (350)
T ss_dssp EEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTT---------------TC------------CEEEEECCHHHHHHHH
T ss_pred EEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChH---------------HHhhhcCCchhccceeeeecCChHHHHHHH
Q ss_pred HHHHhhCC--------CceEEEeCCCCHHHHHHHHHHhhc
Q psy15610 125 EDFLHHHG--------YPVTSIHGDRTQKEREEALRRFRS 156 (237)
Q Consensus 125 ~~~L~~~~--------~~~~~~h~~~~~~~r~~~~~~f~~ 156 (237)
.++|.+.+ .++.++.|......-....+.|++
T Consensus 130 ~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~ 169 (350)
T 3h75_A 130 LKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRR 169 (350)
T ss_dssp HHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHH
No 269
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=20.58 E-value=2.9e+02 Score=21.09 Aligned_cols=80 Identities=18% Similarity=0.048 Sum_probs=46.1
Q ss_pred ceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEE
Q psy15610 58 LTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTS 137 (237)
Q Consensus 58 ~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~ 137 (237)
.+++..++..=-..+++.|... +..+++...+...++.+.+.+...+..+..
T Consensus 26 ~~lVTGas~GIG~aia~~la~~----------------------------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 77 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAAR----------------------------GIAVYGCARDAKNVSAAVDGLRAAGHDVDG 77 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------------------------TCEEEEEESCHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------------------------CCEEEEEeCCHHHHHHHHHHHHhcCCcEEE
Confidence 3556666655566778777766 344445444555556666666666666777
Q ss_pred EeCCCCHHH-HHHHHHHhh--cCCCCEEEEc
Q psy15610 138 IHGDRTQKE-REEALRRFR--SGETPILVAT 165 (237)
Q Consensus 138 ~h~~~~~~~-r~~~~~~f~--~g~~~vlv~T 165 (237)
+..+++..+ -...++... -|.+++||..
T Consensus 78 ~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 108 (279)
T 3sju_A 78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNS 108 (279)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 777765433 222233222 2567777765
No 270
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.53 E-value=2.7e+02 Score=20.66 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=20.2
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcc
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 91 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (237)
.|++...........+.+...++++..+.....
T Consensus 61 giIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 93 (272)
T 3o74_A 61 ALFVASCLPPEDDSYRELQDKGLPVIAIDRRLD 93 (272)
T ss_dssp EEEECCCCCSSCCHHHHHHHTTCCEEEESSCCC
T ss_pred EEEEecCccccHHHHHHHHHcCCCEEEEccCCC
Confidence 455555443335566677778888877765443
No 271
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=20.50 E-value=2.7e+02 Score=20.82 Aligned_cols=80 Identities=6% Similarity=-0.049 Sum_probs=47.4
Q ss_pred ceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEE
Q psy15610 58 LTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTS 137 (237)
Q Consensus 58 ~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~ 137 (237)
.+++..++..=-..+++.|... +.++++...+....+.+.+.+...+..+..
T Consensus 9 ~vlVTGas~GIG~aia~~l~~~----------------------------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T 3h7a_A 9 TVAVIGAGDYIGAEIAKKFAAE----------------------------GFTVFAGRRNGEKLAPLVAEIEAAGGRIVA 60 (252)
T ss_dssp EEEEECCSSHHHHHHHHHHHHT----------------------------TCEEEEEESSGGGGHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCchHHHHHHHHHHHC----------------------------CCEEEEEeCCHHHHHHHHHHHHhcCCeEEE
Confidence 3555555655566777777766 445555555556666777777666666777
Q ss_pred EeCCCCHHH-HHHHHHHhh-cCCCCEEEEc
Q psy15610 138 IHGDRTQKE-REEALRRFR-SGETPILVAT 165 (237)
Q Consensus 138 ~h~~~~~~~-r~~~~~~f~-~g~~~vlv~T 165 (237)
+..+++..+ -....+... .|.+++||..
T Consensus 61 ~~~Dv~~~~~v~~~~~~~~~~g~id~lv~n 90 (252)
T 3h7a_A 61 RSLDARNEDEVTAFLNAADAHAPLEVTIFN 90 (252)
T ss_dssp EECCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred EECcCCCHHHHHHHHHHHHhhCCceEEEEC
Confidence 777765433 233333322 2667777765
No 272
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.40 E-value=1.8e+02 Score=18.64 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=43.9
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC----CCCEEEEcCcccccc----CCCCCcEEEEecCCCCHHHHHH
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG----ETPILVATAVAARGL----DIPHVKHVINFDLPSDVEEYVH 194 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gv----dl~~~~~Vi~~~~p~s~~~~~Q 194 (237)
...+.+......+.++.-.++.......++.+++. ...|++.|....... ... ++. .+.-|.++..+.+
T Consensus 38 ~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g-~~~--~l~KP~~~~~l~~ 114 (133)
T 3nhm_A 38 SGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPV-PDA--YLVKPVKPPVLIA 114 (133)
T ss_dssp HHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCC-CSE--EEESSCCHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcC-Cce--EEeccCCHHHHHH
Confidence 33444555667788887777666666666666643 456776665332222 111 222 2345888999988
Q ss_pred hhccccc
Q psy15610 195 RIGRTGR 201 (237)
Q Consensus 195 ~~GR~~R 201 (237)
++.++-+
T Consensus 115 ~i~~~l~ 121 (133)
T 3nhm_A 115 QLHALLA 121 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876544
No 273
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=20.34 E-value=2.8e+02 Score=20.82 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=35.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHH-HHHHHHHhh--cCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE-REEALRRFR--SGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 166 (237)
+..+++...+....+.+.+.+...+..+..+..+++..+ ....++... -|.+++||..-
T Consensus 36 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 36 GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 445555555555666777777666667777777766543 333333322 25788888753
No 274
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=20.34 E-value=1.8e+02 Score=19.38 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=12.4
Q ss_pred CCCCHHHHHHhhccccc
Q psy15610 185 LPSDVEEYVHRIGRTGR 201 (237)
Q Consensus 185 ~p~s~~~~~Q~~GR~~R 201 (237)
-|.++..+.+++-++.+
T Consensus 118 KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 118 KPVNYENFANAIRQLGL 134 (152)
T ss_dssp CCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47788888877776655
No 275
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=20.33 E-value=1.9e+02 Score=22.36 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=25.2
Q ss_pred cchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhh
Q psy15610 67 KGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYT 102 (237)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (237)
.+++.+.+.|...||.+.....-..+.....+..+.
T Consensus 44 ~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 79 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSA 79 (259)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 458899999999999987666555555555554443
No 276
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.07 E-value=2e+02 Score=18.93 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=38.6
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHhhc--CCCCEEEEcCcccccc--CCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 131 HGYPVTSIHGDRTQKEREEALRRFRS--GETPILVATAVAARGL--DIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 131 ~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gv--dl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
....+.++.-.|+.......++.++. ....|++.|....... ..-..-..-.+.-|.+...+..++.++.+.
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 45667777766766666666655543 2345665554321111 111111222344578888888888766543
No 277
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=20.01 E-value=4.1e+02 Score=22.64 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=55.8
Q ss_pred CceEEEEeecccchHHHHHHHhhC-CCceEEEeC-------CCC-----HHHHHHHHHHhhcCCCCEEEEcCccccccCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-GYPVTSIHG-------DRT-----QKEREEALRRFRSGETPILVATAVAARGLDI 174 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~-------~~~-----~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl 174 (237)
+.+++|.|++...+..+++.|... +-.+..+=+ ..+ ..+|..++..+.++...|+|+|-.+-.+.-.
T Consensus 39 ~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~ 118 (483)
T 3hjh_A 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 (483)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCC
Confidence 467888899999899888888754 223332211 111 2457888888888888898888444333333
Q ss_pred CC-----CcEEEEecCCCCHHHHHHhh
Q psy15610 175 PH-----VKHVINFDLPSDVEEYVHRI 196 (237)
Q Consensus 175 ~~-----~~~Vi~~~~p~s~~~~~Q~~ 196 (237)
|. ....+..+...+...+.++.
T Consensus 119 p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 119 PHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp CHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred CHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 32 24456666666777766553
Done!