RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15610
(237 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 125 bits (316), Expect = 2e-35
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKER----------EEALRRFRSGETP 160
L+F +KK D+L L G + + +AL +G+
Sbjct: 39 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD 98
Query: 161 ILVATAVAARG---LDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201
++ + + LP D R GRTGR
Sbjct: 99 SVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR 142
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 97.3 bits (241), Expect = 7e-25
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQ--------KEREEALRRFRSGETPIL 162
+VF ++ A ++ + L G G ++ +E++ L F GE +L
Sbjct: 164 IIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223
Query: 163 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
VAT+V GLD+P V V+ ++ + R GRTGR
Sbjct: 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 265
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 96.4 bits (239), Expect = 8e-25
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA---- 166
+++ T + A+++ + L + ++ +F GE L+ TA
Sbjct: 28 GIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYG 81
Query: 167 VAARGLDIPH-VKHVINFDLPSDVEEYVHRIGRTGRMG 203
RGLD+P ++ + P + I +
Sbjct: 82 TLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLS 115
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 75.2 bits (184), Expect = 2e-17
Identities = 30/93 (32%), Positives = 39/93 (41%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV TKK A+ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 34 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 93
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
GLDIP V V D + R
Sbjct: 94 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 126
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 74.2 bits (181), Expect = 7e-17
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++F + + + + +I +++EREE L FR+G +V++ V
Sbjct: 96 IIIFTRHNELVYR-----ISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 150
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
G+D+P + EY+ R+GR R
Sbjct: 151 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 184
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 72.4 bits (177), Expect = 7e-17
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
L+F +KK D+L L G + + + ++VAT
Sbjct: 38 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVVVATDALMT 90
Query: 171 GLDIPH---VKHVINFDLPSDVEEYVHRIGRTGR 201
G + + P D R GRTGR
Sbjct: 91 GFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR 124
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 75.0 bits (183), Expect = 2e-16
Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 25/151 (16%)
Query: 73 EDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHG 132
D P+ + ++ ++ ++ + T+ FV + K + + L +G
Sbjct: 145 RDPFPQSNAPIMDEEREIPERSWNSGHEW--VTDFKGKTVWFVPSIKAGNDIAACLRKNG 202
Query: 133 YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP---------HVKHVINF 183
V + E + R+ + +V T ++ G + +K VI
Sbjct: 203 KKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILT 258
Query: 184 DLPSDVE----------EYVHRIGRTGRMGN 204
D V R GR GR
Sbjct: 259 DGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 71.1 bits (173), Expect = 4e-16
Identities = 38/94 (40%), Positives = 63/94 (67%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++F T++ ++L L + + V++I+ D Q+ER+ ++ FRSG + IL++T + AR
Sbjct: 30 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 89
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
G+D+ V VIN+DLP++ E Y+HRIGR GR G
Sbjct: 90 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 123
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 63.8 bits (154), Expect = 2e-13
Identities = 43/104 (41%), Positives = 63/104 (60%)
Query: 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160
L+ E LVF +TK+ +L L G+ +IHGD +Q +RE+ +R F+ +
Sbjct: 21 CRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80
Query: 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
IL+AT V +RG+D+ + VIN+ LP + E Y+HRIGRTGR G
Sbjct: 81 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGK 124
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 62.8 bits (152), Expect = 5e-13
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV V T + A++L FL HG +H + +R+ +R R G LV +
Sbjct: 34 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLRE 93
Query: 171 GLDIPHVKHVINFDL-----PSDVEEYVHRIGRTGRMGN 204
GLDIP V V D + IGR R
Sbjct: 94 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 132
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 63.1 bits (152), Expect = 8e-13
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++ ++ + L G + H R + +F+ + I+VAT
Sbjct: 33 GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 92
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202
G++ P+V+ V++FD+P ++E Y GR GR
Sbjct: 93 GINKPNVRFVVHFDIPRNIESYYQETGRAGRD 124
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 61.1 bits (147), Expect = 4e-12
Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 33/195 (16%)
Query: 17 RVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFL 76
G E + +R +L+ +E + + LVF T++GA++ L
Sbjct: 5 VEGVLCEGTLELFDGAFSTSRRVKFEELV----EECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 77 HHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVT 136
+ E + ++ +E +
Sbjct: 61 SAITA----------KYVENEGLEKAILEENEG------------EMSRKLAECVRKGAA 98
Query: 137 SIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI-------NFDLPSDV 189
H +R FR G ++VAT A G+++P + ++ + V
Sbjct: 99 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKV 158
Query: 190 EEYVHRIGRTGRMGN 204
EY GR GR G
Sbjct: 159 SEYKQMAGRAGRPGM 173
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 60.0 bits (144), Expect = 5e-12
Identities = 52/115 (45%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Query: 94 EREEAQQYTLISCDEALT----LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT ++F TK+ D L + + + V+S+HGD QKERE
Sbjct: 16 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 75
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 76 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 130
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 53.8 bits (128), Expect = 9e-10
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 92 QKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAL 151
+K++ +A S ++F +T++ A L + G+ V+ + G+ T ++R +
Sbjct: 16 RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASII 75
Query: 152 RRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMGN 204
+RFR G+ +L+ T V ARG+D+ V V+NFDLP D E Y+HRIGRTGR G
Sbjct: 76 QRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK 134
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 55.0 bits (132), Expect = 1e-09
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHG 140
+ + D + + I D+ T F+ + + A+ + L G V ++
Sbjct: 11 GEIEDVQTDIPSEPWNTG--HDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 68
Query: 141 DRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIG 197
K E + + ++AT +A G ++ V+ V++
Sbjct: 69 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRK 120
Score = 32.3 bits (73), Expect = 0.045
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTL 103
T F+ + + A+ + L G V ++ ++E +Q
Sbjct: 39 TAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKP 83
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 51.0 bits (121), Expect = 2e-08
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 129 HHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSD 188
+ + +HG +Q+E++ + F G ILV+T V G+D+P ++ +
Sbjct: 61 VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERF 120
Query: 189 VEEYVHR-IGRTGRM 202
+H+ GR GR
Sbjct: 121 GLAQLHQLRGRVGRG 135
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 44.9 bits (106), Expect = 1e-06
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 90 RTQKEREEAQQYTLISCDEAL--TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKER 147
RT + + +A + LV + ++ + L + G P ++ ++E
Sbjct: 14 RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREA 73
Query: 148 EEALRRFRSGETPILVATAVAARGLDI---PHVK-----HVINFDLPSDVEEYVHRIGRT 199
+ + G + +AT +A RG DI VK V+ + GR+
Sbjct: 74 QIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRS 131
Query: 200 GRMGNLDFPFSY 211
GR G+ Y
Sbjct: 132 GRQGDPGITQFY 143
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 38.1 bits (87), Expect = 3e-04
Identities = 44/184 (23%), Positives = 61/184 (33%), Gaps = 58/184 (31%)
Query: 21 TSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80
T + ITQ A+V+E+ K CL L S + ++F + + L + G
Sbjct: 3 TLKGITQYYAFVEERQKLHCLNTLFSKLQINQ------AIIFCNSTNRVELLAKKITDLG 56
Query: 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHG 140
Y H Q+ER + G T +
Sbjct: 57 YSCYYSHARMKQQERNKVFHE---------------------------FRQGKVRTLVCS 89
Query: 141 DRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG 200
D RG+DI V VINFD P E Y+HRIGR+G
Sbjct: 90 DL-------------------------LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 124
Query: 201 RMGN 204
R G+
Sbjct: 125 RFGH 128
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 34.9 bits (79), Expect = 0.007
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 113 VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAA 169
+ + D E + Y + G + K+R + + RF + + ++++
Sbjct: 123 LVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG 182
Query: 170 RGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
GL++ ++ FD + + R R G
Sbjct: 183 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 216
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 33.9 bits (76), Expect = 0.007
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 25 ITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVT 84
+ Q + + +K L DLL + ++FV++ + L L +P
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQ------VVIFVKSVQRCIALAQLLVEQNFPAI 55
Query: 85 SIHGDRTQKEREEAQQYTLISC 106
+IH Q+ER Q
Sbjct: 56 AIHRGMPQEERLSRYQQFKDFQ 77
Score = 32.0 bits (71), Expect = 0.037
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++FV++ + L L +P +IH Q+ER ++F+ + ILVAT + R
Sbjct: 30 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 89
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
G+DI V N+D+P D + Y+HR+ R GR G
Sbjct: 90 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 123
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 30.6 bits (69), Expect = 0.065
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 60 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCD-EALTLVFVETK 118
L F ++ + D V I G E + + D L
Sbjct: 39 LYFKSMERDPPFVLDASLGVINRVEKIGG--ASSRGENSYGLETVCKDIRNLRFAHKPEG 96
Query: 119 KGADQLEDFLHHHGYPVTSIH 139
+ + + L + +PV++
Sbjct: 97 RTRRSIFENLMKYAFPVSNNL 117
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 29.0 bits (64), Expect = 0.47
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT-AVAARGLDIPHVKHV 180
+ + V + G T E+E+ R+G+ +++ T A+ + ++ V
Sbjct: 150 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLV 209
Query: 181 I 181
I
Sbjct: 210 I 210
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 178
Score = 26.1 bits (57), Expect = 2.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 176 HVKHVINFDLPSDV 189
++ V +DLP +V
Sbjct: 157 ALRFVKGYDLPDEV 170
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 26.5 bits (58), Expect = 2.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 137 SIHGDRTQKEREEALR--RFRSGETP-ILVATA 166
+I DR Q R E L R R G P I+V TA
Sbjct: 189 TIRSDRAQNARSEGLNLVRNRKGRLPHIVVVTA 221
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal
domain {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 132
Score = 25.4 bits (56), Expect = 4.4
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 143 TQKEREEALRRFRSGETPILVATAVAARGLDIP 175
T E+++ L P ++ T + P
Sbjct: 68 TLVEQQQILHNLLKLNPPAIILT----KSFTDP 96
>d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein
MTH1747 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 112
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 134 PVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVE 190
+ IH R +E +E P+ + T + + + + +D
Sbjct: 58 KSSCIHARRRYEEMKEVQDMLAEVIDPV-MPTCIIRI------FDKLKDVKVSADAR 107
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
subtilis [TaxId: 1423]}
Length = 177
Score = 25.1 bits (55), Expect = 5.7
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 83 VTSIHGDRTQKER--EEAQQYTLISCDEALTLVFVETKKGA-----DQLEDFLHHHGYPV 135
S+ + ++ Q+ + D L L++ K+G+ E GYP+
Sbjct: 105 EASLTHRPYESPLQFKQKNQFFIDKSDGLL-LLYDPEKEGSPKYMLGTAEKRREQDGYPI 163
Query: 136 TSIHGDRTQKEREE 149
I D + EE
Sbjct: 164 YFITMDDLRVTVEE 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 936,637
Number of extensions: 41795
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 45
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)