BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15612
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 242 bits (618), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 115/123 (93%), Positives = 119/123 (96%)
Query: 9 GRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFA 68
GRQLQQHDF+SQIFSLGYCP+GEWLAVGME+SNVEVLH KPDKYQLHLHESCVLSL+FA
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 69 ACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYE 128
CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS DDKYIVTGSGDKKATVYE
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Query: 129 VIY 131
VIY
Sbjct: 335 VIY 337
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIV 116
H V F+ G+ S G D L ++ G + K VL C S+DD YI
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 117 TGSGDKKATVYE 128
T S DKK +++
Sbjct: 681 TCSADKKVKIWD 692
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 42/142 (29%)
Query: 28 PSGEWLAVGMENSNVEVLHALKPDKYQLHL-HESCVLSLRFAACGKWFVSTGKDNLLNAW 86
P E++A G E+ ++++ + + H+ V ++F A GK +S+ +D+++ W
Sbjct: 978 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Query: 87 RTPYGASIF-QSKESS----------------------------------------SVLS 105
G +F Q+ + + +VLS
Sbjct: 1038 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1097
Query: 106 CDISADDKYIVTGSGDKKATVY 127
C IS+D + S DK A ++
Sbjct: 1098 CAISSDATKFSSTSADKTAKIW 1119
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIV 116
H V F+ G+ S G D L ++ G + K VL C S+DD YI
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 117 TGSGDKKATVYE 128
T S DKK +++
Sbjct: 674 TCSADKKVKIWD 685
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 42/142 (29%)
Query: 28 PSGEWLAVGMENSNVEVLHALKPDKYQLHL-HESCVLSLRFAACGKWFVSTGKDNLLNAW 86
P E++A G E+ ++++ + + H+ V ++F A GK +S+ +D+++ W
Sbjct: 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Query: 87 RTPYGASIF-QSKESS----------------------------------------SVLS 105
G +F Q+ + + +VLS
Sbjct: 1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1090
Query: 106 CDISADDKYIVTGSGDKKATVY 127
C IS+D + S DK A ++
Sbjct: 1091 CAISSDATKFSSTSADKTAKIW 1112
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIV 116
H V F+ G+ S G D L ++ G + + K VL C S DD++I
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 117 TGSGDKKATVY 127
T S DKK ++
Sbjct: 680 TCSVDKKVKIW 690
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 42/142 (29%)
Query: 28 PSGEWLAVGMENSNVEVLHALKPDKYQLHL-HESCVLSLRFAACGKWFVSTGKDNLLNAW 86
P +++A G EN +E+L + +Q H+ V ++F A K +S+ D + W
Sbjct: 977 PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Query: 87 RTPYGASIFQ-----------------------------------SKESS------SVLS 105
IF +KE +VLS
Sbjct: 1037 NWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLS 1096
Query: 106 CDISADDKYIVTGSGDKKATVY 127
CDIS D + S DK A ++
Sbjct: 1097 CDISHDATKFSSTSADKTAKIW 1118
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 1 MYLQSVSPGRQLQQHDFSS-QIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLH 58
+ L + G+Q++ D ++L + P ++LA G V + K Y L
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 59 ESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISADDKYIVT 117
+LS+ ++ GK+ S D ++N + G + + + S S D + +VT
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 118 GSGDKKATVYEV 129
S D +Y+V
Sbjct: 224 ASDDGYIKIYDV 235
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 19 SQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKY---QLHLHESCVLSLRFAACGK--- 72
S+++S+ + P + +++ + L K+ + H V +R++ K
Sbjct: 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178
Query: 73 -------WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKAT 125
+F S G D L W T + S+V IS + KYI TG DKK
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 126 VYEVI 130
+++++
Sbjct: 239 IWDIL 243
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVLSLRFA 68
R LQ H S +++SL + P W+ ++ + V +AL K + + LH V+ FA
Sbjct: 60 RTLQGH--SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 69 ACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL--------SCDISAD-DKYIVTGS 119
G+ G D+ + + A + S VL SC D + ++TGS
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 120 GDKKATVYEV 129
GD+ +++V
Sbjct: 178 GDQTCVLWDV 187
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVST 77
SS ++ + + P G+ +A ++ V++ + L H S V + F+ G+ S
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 403
Query: 78 GKDNLLNAWRTPYGASIFQS--KESSSVLSCDISADDKYIVTGSGDKKATVYE 128
D + W + Q+ SSSV S DD+ I + S DK ++
Sbjct: 404 SDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVST 77
SS ++ + + P G+ +A ++ V++ + L H S V + F+ G+ S
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASA 362
Query: 78 GKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISADDKYIVTGSGDKKATVYE 128
D + W + Q + SSSV S D + I + S DK ++
Sbjct: 363 SDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPD---KYQLHLHES-CVLSLRFAACGKWFVSTGKDN 81
+ P+G+++ ++ +++ K Y H +E C+ + GKW VS +DN
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 82 LLNAWR 87
L+ W
Sbjct: 263 LVYIWN 268
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPD---KYQLHLHES-CVLSLRFAACGKWFVSTGKDN 81
+ P+G+++ ++++++ K Y H +E C+ + GKW VS +DN
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 82 LLNAWR 87
++ W
Sbjct: 263 MVYIWN 268
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 101
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 102 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPD---KYQLHLHES-CVLSLRFAACGKWFVSTGKDN 81
+ P+G+++ ++ +++ K Y H +E C+ + GKW VS +DN
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 82 LLNAWR 87
L+ W
Sbjct: 277 LVYIWN 282
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPD---KYQLHLHES-CVLSLRFAACGKWFVSTGKDN 81
+ P+G+++ ++ +++ K Y H +E C+ + GKW VS +DN
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 82 LLNAWR 87
L+ W
Sbjct: 263 LVYIWN 268
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 106
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 107 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 86 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 108
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 109 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFV 75
+ + S+ + P+GEWLA + +++ A K++ + H+ + + +++ V
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 76 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPD---KYQLHLHES-CVLSLRFAACGKWFVSTGKDN 81
+ P+G+++ ++ +++ K Y H +E C+ + GKW VS +DN
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 82 LLNAWR 87
L+ W
Sbjct: 263 LVYIWN 268
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL--HESCVLSLRFAACGKWFVSTG 78
+ S+ + P+GEWLA + +++ A K++ + H+ + + +++ VS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 79 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
D L W G + K S+ V C+ + IV+GS D+ +++V
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 53 YQLHLHES-CVLSLRFAACGKWFVSTGKDNLLNAWR 87
Y H +E C+ + GKW VS +DNL+ W
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYG 91
H V LR+A G+ S G DNL+N W + G
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 273
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYG 91
H V LR+A G+ S G DNL+N W + G
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVLSLRFA 68
R L+ H ++I+++ + L ++ + + + +K + + L S V++ +A
Sbjct: 49 RTLRGH--LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 69 ACGKWFVSTGKDNLLNAW--RTPYGASIFQSKE---SSSVLSCDISADDKYIVTGSGDKK 123
G + G DN+ + + +T G ++ S+E + LSC DD IVT SGD
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 124 ATVYEV 129
++++
Sbjct: 166 CALWDI 171
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVLSLRFA 68
R L+ H ++I+++ + L ++ + + + +K + + L S V++ +A
Sbjct: 60 RTLRGH--LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 117
Query: 69 ACGKWFVSTGKDNLLNAW--RTPYGASIFQSKE---SSSVLSCDISADDKYIVTGSGDKK 123
G + G DN+ + + +T G ++ S+E + LSC DD IVT SGD
Sbjct: 118 PSGNYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 176
Query: 124 ATVYEV 129
++++
Sbjct: 177 CALWDI 182
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVLSLRFA 68
R L+ H ++I+++ + L ++ + + + +K + + L S V++ +A
Sbjct: 49 RTLRGH--LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 69 ACGKWFVSTGKDNLLNAW--RTPYGASIFQSKE---SSSVLSCDISADDKYIVTGSGDKK 123
G + G DN+ + + +T G ++ S+E + LSC DD IVT SGD
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 124 ATVYEV 129
++++
Sbjct: 166 CALWDI 171
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 8 PGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHAL-KPDKYQLHLHESCVLSLR 66
P R + +S I L + ++ G ++ + V ++ K QL H+ V +L+
Sbjct: 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 169
Query: 67 FAACGKWFVSTGKDNLLNAWRTPYG--ASIFQSKESSSVLSCDIS--ADDKYIVTGSGDK 122
+A G VS D + W G +F+ +S+V DI + KYIVTGS D
Sbjct: 170 YAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 123 KATVYEV 129
V+++
Sbjct: 228 TLHVWKL 234
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 101 SSVLSCDISADDKYIVTGSGDKKATVYEVI 130
+SV++C + +D Y++TG+ DK VY+ I
Sbjct: 122 TSVITC-LQFEDNYVITGADDKMIRVYDSI 150
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 31 EWLAVGMENSNVEVLHAL-KPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTP 89
++ G ++ + V ++ K QL H+ V +L++A G VS D + W
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIK 191
Query: 90 YG--ASIFQSKESSSVLSCDIS--ADDKYIVTGSGDKKATVYEV 129
G +F+ +S+V DI + KYIVTGS D V+++
Sbjct: 192 KGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 101 SSVLSCDISADDKYIVTGSGDKKATVYEVI 130
+SV++C + +D Y++TG+ DK VY+ I
Sbjct: 122 TSVITC-LQFEDNYVITGADDKXIRVYDSI 150
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYG 91
H V LR+A G+ S G DNL+N W + G
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVLSLRFA 68
R L+ H ++I+++ + L ++ + + + +K + + L S V++ +A
Sbjct: 49 RTLRGH--LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 69 ACGKWFVSTGKDNLLNAW--RTPYGASIFQSKE---SSSVLSCDISADDKYIVTGSGDKK 123
G + G DN+ + + +T G ++ S+E + LSC DD IVT SGD
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 124 ATVYEV 129
++++
Sbjct: 166 CALWDI 171
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVLSLRFA 68
R L+ H ++I+++ + L ++ + + + +K + + L S V++ +A
Sbjct: 49 RTLRGH--LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 69 ACGKWFVSTGKDNLLNAW--RTPYGASIFQSKE---SSSVLSCDISADDKYIVTGSGDKK 123
G + G DN+ + + +T G ++ S+E + LSC DD IVT SGD
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 124 ATVYEV 129
++++
Sbjct: 166 CALWDI 171
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAW--RTPYGASIFQSKESSSVLSCDISADDKYI 115
H++ V + F + GK+ +S D L W + + E V S D Y+
Sbjct: 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAPYV 395
Query: 116 VTGSGDKKATVYE 128
VTGS D+ V+E
Sbjct: 396 VTGSVDQTVKVWE 408
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 75 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVI 130
VS DN + W GA + + ++ C I D+K IV+G+ D K V++++
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRC-IRFDNKRIVSGAYDGKIKVWDLV 364
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAW--RTPYGASIFQSKESSSVLSCDISADDKYI 115
H VL LRF V+ KD + W +P ++ + + DDKYI
Sbjct: 212 HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI 269
Query: 116 VTGSGDKKATVY 127
V+ SGD+ V+
Sbjct: 270 VSASGDRTIKVW 281
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 74 FVSTGKDNLLNAWRTPYGASIFQ---SKESSSVLSCDISADDKYIVTGSGDKKATVYE 128
+S G DN++ W GA++ ++ S D S D I T DK+ V E
Sbjct: 147 LLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 66 RFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISADDKYIVTGSGDKKA 124
+FA G W D L W G + + + VLS S+D++ IV+GS DK
Sbjct: 99 QFALSGSW------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 125 TVYEVI 130
++ +
Sbjct: 153 KLWNTL 158
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 66 RFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISADDKYIVTGSGDKKA 124
+FA G W D L W G + + + VLS S+D++ IV+GS DK
Sbjct: 76 QFALSGSW------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 125 TVYEVI 130
++ +
Sbjct: 130 KLWNTL 135
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 19 SQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-YQLHLHESCVL---SLRFAACGKWF 74
S + S+ Y PSG+ A G +++ L+ L+ D+ ++ ES + S+ F+ G+
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCR-LYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299
Query: 75 VSTGKDNLLNAWRTPYGASI---FQSKESSSVLSCDISADDKYIVTGSGDKKATVY 127
+ D +N W G+ + F + S L +S D +GS D V+
Sbjct: 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR--VSPDGTAFCSGSWDHTLRVW 353
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 3 LQSVSPGRQLQQHDFSSQIF---SLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL-H 58
L + R++ + S IF S+ + SG L G + + V LK + + H
Sbjct: 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 59 ESCVLSLRFAACGKWFVSTGKDNLLNAW 86
E+ V +LR + G F S D+ L W
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 54 QLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISADD 112
+L HE + +++ G S KD+ + W + G + + ++ S D+
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 113 KYIVTGSGDKKATVYEV 129
KY VTGS D +++V
Sbjct: 87 KYCVTGSADYSIKLWDV 103
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 12 LQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLH-ESCVLSLRFAAC 70
LQ H+ I+SL Y PSG+ L G + V + L+ + L L E V ++ +
Sbjct: 161 LQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRIWD-LRTGQCSLTLSIEDGVTTVAVSPG 217
Query: 71 -GKWFVSTGKDNLLNAWRTPYGASIFQ--------SKESSSVLSCDISADDKYIVTGSGD 121
GK+ + D + W + G + + + SV S + D + +V+GS D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 122 KKATVYEV 129
+ ++ +
Sbjct: 278 RSVKLWNL 285
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-------------VL 104
H+ V S+ F G+ VS D + W + SK +S VL
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 105 SCDISADDKYIVTGSGDK 122
S + +D+YI++GS D+
Sbjct: 315 SVATTQNDEYILSGSKDR 332
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 52 KYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTP----YGASIFQSKESSSVLSCD 107
+Y+ H VLS+ F+ + VS G+DN L W + S + S +
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFS 161
Query: 108 ISADDKYIVTGSGDKKATVYEV 129
S D IV+G D V+++
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDL 183
>pdb|2RRU|A Chain A, Solution Structure Of The Uba Omain Of P62 And Its
Interaction With Ubiquitin
pdb|3B0F|A Chain A, Crystal Structure Of The Uba Domain Of P62 And Its
Interaction With Ubiquitin
pdb|3B0F|B Chain B, Crystal Structure Of The Uba Domain Of P62 And Its
Interaction With Ubiquitin
Length = 53
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 19 SQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLH 56
SQ+ S+G+ G WL ++ N ++ AL +Y H
Sbjct: 16 SQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH 53
>pdb|1Q02|A Chain A, Nmr Structure Of The Uba Domain Of P62 (Sqstm1)
pdb|2JY7|A Chain A, Nmr Structure Of The Ubiquitin Associated (Uba) Domain
Of P62 (Sqstm1). Rdc Refined
pdb|2JY8|A Chain A, Nmr Structure Of The Ubiquitin Associated (Uba) Domain
Of P62 (Sqstm1) In Complex With Ubiquitin. Rdc Refined
pdb|2K0B|X Chain X, Nmr Structure Of The Uba Domain Of P62 (Sqstm1)
pdb|2KNV|A Chain A, Nmr Dimer Structure Of The Uba Domain Of P62 (Sqstm1)
pdb|2KNV|B Chain B, Nmr Dimer Structure Of The Uba Domain Of P62 (Sqstm1)
Length = 52
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 19 SQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLH 56
SQ+ S+G+ G WL ++ N ++ AL +Y H
Sbjct: 15 SQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH 52
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 28 PSGEWLAVGMENSNVEVLHALKPDKY---QLHLHESCVLSLRFAACGKWFVSTGKDNLLN 84
PS E LA + V++ + D L HES V SL F G+ S D +
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 85 AWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 131
WR + V K I T SG T+Y++ +
Sbjct: 220 IWRQ------YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 23 SLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGK-DN 81
SL S + G NV +L+ + + L +H+ V + C WF++T D
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 82 LLNAW 86
+ W
Sbjct: 274 TVKIW 278
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 23 SLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGK-DN 81
SL S + G NV +L+ + + L +H+ V + C WF++T D
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 82 LLNAW 86
+ W
Sbjct: 274 TVKIW 278
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 23 SLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGK-DN 81
SL S + G NV +L+ + + L +H+ V + C WF++T D
Sbjct: 215 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 82 LLNAW 86
+ W
Sbjct: 275 TVKIW 279
>pdb|3GUW|A Chain A, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|B Chain B, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|C Chain C, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|D Chain D, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
Length = 261
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 22 FSLGYCPSGEWLA---VGMENSNVEVLHALK 49
F LGY GEW+A +G+E E + LK
Sbjct: 83 FVLGYLEEGEWVAFGEIGLELVTDEEIEVLK 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,072,191
Number of Sequences: 62578
Number of extensions: 149866
Number of successful extensions: 428
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 120
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)