RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15612
(131 letters)
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 78.7 bits (192), Expect = 6e-19
Identities = 111/119 (93%), Positives = 115/119 (96%)
Query: 13 QQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGK 72
QQHDF+SQIFSLGYCP+GEWLAVGME+SNVEVLH KPDKYQLHLHESCVLSL+FA CGK
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278
Query: 73 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 131
WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS DDKYIVTGSGDKKATVYEVIY
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337
Score = 32.9 bits (73), Expect = 0.007
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 51 DKYQLHLHESCVLSLRFAACGKWF-VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 109
D +Q + S A G+ V D L+ + I V + IS
Sbjct: 1 DYFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS 60
Query: 110 ADDKYIVTGSGDK 122
+++ TG
Sbjct: 61 NPTRHVYTGGKGC 73
Score = 30.2 bits (66), Expect = 0.073
Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 9 GRQLQQHDFSSQIFSLGYCPSGEWLAVGMENS----NVEVLHALKP-DKYQLHLHESCVL 63
RQ+ + + ++ + G + ++ P + ++ +
Sbjct: 42 ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101
Query: 64 SLRFAACGKWFVSTGKDNLLNAWRTPY 90
S + G + G+ + L+ W
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAA 128
Score = 25.5 bits (54), Expect = 2.2
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 1 MYLQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEV 44
+ G + Q SS + S +++ G + V
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 55.1 bits (131), Expect = 1e-10
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 3 LQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESC- 61
++ + H S I ++ + P+G A G +++ + + + H++
Sbjct: 213 VREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 62 --VLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISADDKYIVTG 118
+ S+ F+ G+ ++ D N W + + V ++ D + TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 119 SGDKKATVY 127
S D ++
Sbjct: 331 SWDSFLKIW 339
Score = 42.0 bits (97), Expect = 6e-06
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 52 KYQLHLHESCVLSLRFAACGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDI 108
+ HES + ++ F G F + D L + + + S
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 109 SADDKYIVTGSGDKKATVYEV 129
S + ++ G D V++
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299
Score = 33.2 bits (74), Expect = 0.006
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 52 KYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISA 110
+ L H + + ++ + + VS +D L W + + SS V++C +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 111 DDKYI 115
Y+
Sbjct: 108 SGNYV 112
Score = 27.8 bits (60), Expect = 0.40
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+ + + D + +V+ S D K +++
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
Score = 27.0 bits (58), Expect = 0.83
Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPD-KYQLHLHESCVLSLRFA 68
R L+ H ++I+++ + L ++ + + + + + + L S V++ +A
Sbjct: 49 RTLRGH--LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 69 ACGKWF 74
G +
Sbjct: 107 PSGNYV 112
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 51.3 bits (121), Expect = 3e-09
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 23 SLGYCPSGEWLAVGMENSNVEVLHALKPD-KYQLHLHESCVLSLRFAACGKWFVSTGKDN 81
+ G +L G + +++ L H++ V + F + GK+ +S D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 82 LLNAWRTPYGASIFQSKE-SSSVLSCDISADDKYIVTGSGDKKATVYE 128
L W + V S D Y+VTGS D+ V+E
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 34.7 bits (78), Expect = 0.002
Identities = 14/58 (24%), Positives = 20/58 (34%)
Query: 49 KPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 106
P+KY L H S V + F VS +D + W G K + +
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Score = 34.3 bits (77), Expect = 0.002
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 51 DKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDIS 109
Y + + + G + +S +D + W G + + V
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 110 ADDKYIVTGSGDKKATVYEV 129
+ K+I++ + DK V++
Sbjct: 257 SGGKFILSCADDKTLRVWDY 276
Score = 30.5 bits (67), Expect = 0.046
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
S V +V+ S D V++
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
Score = 28.2 bits (61), Expect = 0.34
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 4/122 (3%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPD-KYQLHLHESCVLSLRFA 68
L H S + + + P + E++ ++V D + L H V + F
Sbjct: 11 YALSGH--RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 69 ACGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISADDKYIVTGSGDKKATVY 127
GK S D + W I +V S I + +IV+ S DK ++
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 128 EV 129
EV
Sbjct: 129 EV 130
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 46.7 bits (109), Expect = 1e-07
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 20/132 (15%)
Query: 18 SSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDK-------------YQLHLHESCVLS 64
++S+ + G+ + G + +V++ + + H+ VLS
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 65 LRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI------SADDKYIVT 117
+ ++ +S KD + W G + + +SV+S + + T
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 118 GSGDKKATVYEV 129
GSGD KA +++
Sbjct: 374 GSGDCKARIWKY 385
Score = 43.6 bits (101), Expect = 1e-06
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 13 QQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHA--------LKPDKYQLHLHESCVLS 64
G+++A G + V V + L + H+ V S
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259
Query: 65 LRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ-------------SKESSSVLSCDISAD 111
+ F G+ VS D + W + VLS + +
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319
Query: 112 DKYIVTGSGDKKATVYEV 129
D+YI++GS D+ ++
Sbjct: 320 DEYILSGSKDRGVLFWDK 337
Score = 32.1 bits (71), Expect = 0.015
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 26/137 (18%)
Query: 8 PGRQLQQHDFSSQIFSLGYCPSG-EWLAVGMENSNVEVLHALKPDKYQLHL-----HESC 61
P Q H F L N + + P + + L H S
Sbjct: 5 PYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 64
Query: 62 VLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------------SSS 102
V ++F+ G++ TG + +R G+ + + +
Sbjct: 65 VCCVKFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 103 VLSCDISADDKYIVTGS 119
+ S S D K++ TG+
Sbjct: 124 IRSVCFSPDGKFLATGA 140
Score = 27.5 bits (59), Expect = 0.61
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 100 SSSVLSCDISADDKYIVTGSGDK 122
+S V S D +Y+ TG
Sbjct: 62 TSVVCCVKFSNDGEYLATGCNKT 84
Score = 25.1 bits (53), Expect = 3.0
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 3 LQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENS-------NVEVLHALKPDKY-- 53
L + D +S + + + GE+LA G + + ++ L D
Sbjct: 47 LPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN 106
Query: 54 ---------QLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQ 96
+ + S+ F+ GK+ + +D L+ W +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 158
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 39.5 bits (90), Expect = 5e-05
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 15 HDFSSQ-IFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHL---HESCVLSLRFAAC 70
H F + I + +A+ N V + Q+H H V + +A
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 71 GKWFVSTGKDNLLNAWRTPY 90
V+ G D W
Sbjct: 63 SNRIVTCGTDRNAYVWTLKG 82
Score = 37.9 bits (86), Expect = 1e-04
Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 3/79 (3%)
Query: 56 HLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISADD 112
+ + ++ ++ + + + + V D + D
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 113 KYIVTGSGDKKATVYEVIY 131
IVT D+ A V+ +
Sbjct: 64 NRIVTCGTDRNAYVWTLKG 82
Score = 30.6 bits (67), Expect = 0.052
Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Query: 13 QQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGK 72
+ + ++ + +A G + V + K
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297
Query: 73 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKY----IVTGSGDKKATVYE 128
D ++ + + S +SV + + K T D ++++
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
Query: 129 V 129
V
Sbjct: 358 V 358
Score = 27.1 bits (58), Expect = 0.72
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 95 FQSKESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+ S + + D I + + +YE
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK 36
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 35.6 bits (80), Expect = 0.001
Identities = 7/72 (9%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVT 117
++ + +L + ++ +++ +SAD K ++
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VTEVKNNLTDLRLSADRKTVMV 331
Query: 118 GSGDKKATVYEV 129
D K + +
Sbjct: 332 RKDDGKIYTFPL 343
Score = 33.7 bits (75), Expect = 0.004
Identities = 15/94 (15%), Positives = 26/94 (27%)
Query: 1 MYLQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHES 60
+V PG S I GE+ A VL ++ ++
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN 315
Query: 61 CVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASI 94
+ LR +A K + D + +
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 34.1 bits (76), Expect = 0.003
Identities = 6/68 (8%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 58 HESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKE----SSSVLSCDISADDK 113
+ + ++ + T D L ++ A + +L C+ +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 114 YIVTGSGD 121
+
Sbjct: 70 LQIYVGTV 77
Score = 30.6 bits (67), Expect = 0.041
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+ I ++ S D TVY+
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKF 40
Score = 27.5 bits (59), Expect = 0.46
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 21 IFSLGYCPSGEWLAVGMENSNVEV----LHALKPDKYQLHLHESCVLSLRFAACGKWFVS 76
I + PS L + + ++ V + A D Q ++ +L F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 77 TG 78
G
Sbjct: 74 VG 75
Score = 25.2 bits (53), Expect = 2.9
Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 1 MYLQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHES 60
+ ++ ++++ ++ + S L + + + A+ + L+ S
Sbjct: 275 ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT---IELNAS 331
Query: 61 CVLSL 65
+ +
Sbjct: 332 SIYII 336
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 33.8 bits (75), Expect = 0.004
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 70 CGKWFVSTGKDNLLNAWRTPYGAS---IFQSKESSSVLSCDISADDKYIVTGSGDKKATV 126
+ DN + W + I + + S ++ I ++ IV+ D
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
Query: 127 YEVIY 131
+ V +
Sbjct: 295 WNVPF 299
Score = 31.1 bits (68), Expect = 0.029
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 55 LHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISADD 112
+ H + +L +A GK S + +N+W G S F ++ + ++
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 113 KYIVTGS 119
Sbjct: 68 DLFTVSW 74
Score = 30.7 bits (67), Expect = 0.044
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+ ++ + SAD K + + + +++
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDI 41
Score = 27.6 bits (59), Expect = 0.50
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPDKYQ---LHLHESCVLSLRFAACGKWFVSTGKDNL 82
+ P LA G +++V V + KP + H ++ VS G+D+
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 83 LNAWRTPY 90
+ W P+
Sbjct: 292 IKFWNVPF 299
Score = 24.2 bits (50), Expect = 5.9
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 10 RQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEV--LHALKPDKYQLHLHESCVLSLRF 67
+ H + I +L G+ L ++ + ++ +H + + ++
Sbjct: 6 QVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 68 AACGKWFVSTGKDNLLNAWRT 88
+ G F + D+L
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAG 84
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 33.3 bits (74), Expect = 0.006
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 2/105 (1%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNA 85
G+ V + + D + H V L ++ G S D +
Sbjct: 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264
Query: 86 WRTPYGASI--FQSKESSSVLSCDISADDKYIVTGSGDKKATVYE 128
W I + +V+ S +
Sbjct: 265 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 30.3 bits (66), Expect = 0.055
Identities = 12/72 (16%), Positives = 19/72 (26%)
Query: 20 QIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGK 79
LG P+G+ + S V D H + + G + S
Sbjct: 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 80 DNLLNAWRTPYG 91
+ W T
Sbjct: 79 HGNVRIWDTTQT 90
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 32.1 bits (71), Expect = 0.015
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 53 YQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADD 112
Q+ H + + + G + + + + S ++S D+
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311
Query: 113 KY--IVTGSGDKKATVYEV 129
K +GDK +++
Sbjct: 312 KPLLYALSTGDKTLYIHDA 330
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 31.5 bits (69), Expect = 0.023
Identities = 6/80 (7%), Positives = 19/80 (23%), Gaps = 3/80 (3%)
Query: 53 YQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISA 110
+ + + + D + + I ++ V +
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE- 267
Query: 111 DDKYIVTGSGDKKATVYEVI 130
+V+ D + V+
Sbjct: 268 TPSTLVSSGADACIKRWNVV 287
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 31.4 bits (69), Expect = 0.026
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 26 YCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNA 85
+ G ++ + + ++ L L K VS D +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWD-IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242
Query: 86 WRTPYGASIFQSKESSSVLS--------CDISADDKYIVTGSGDKKATVYE 128
W + + + + D+ IV+ S D +++
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
Score = 27.5 bits (59), Expect = 0.54
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 96 QSKESSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+S+ S V + DD+ IV+G D +++
Sbjct: 11 RSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDK 42
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 30.7 bits (67), Expect = 0.045
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 70 CGKWFVSTGKDNLLNAWRTPYGASI----FQSKESSSVLSCDISADDKYIVTGSGDKKAT 125
+ F + G D + W + ++ + ++ + I++ S D
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 126 VYEV 129
YE+
Sbjct: 322 FYEL 325
Score = 24.5 bits (51), Expect = 4.6
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 19 SQIFSLGYCPSGEWLAVGMENS----NVEVLHALKPDKYQLHLHESC-VLSLRFAAC--G 71
+ L Y P+ +A S ++ + P Q H S V +++F+
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 72 KWFVSTGKDNLLNAWRTPYG 91
++ S + + W +
Sbjct: 78 QYLCSGDESGKVIVWGWTFD 97
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 30.6 bits (67), Expect = 0.046
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 50 PDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 109
P + L H + V++ + ++ D ++ + + + Q +
Sbjct: 3 PQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 61
Query: 110 ADDKYIVTGSG 120
A +V+GS
Sbjct: 62 AHGGILVSGST 72
Score = 29.9 bits (65), Expect = 0.075
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+SV++C + +D Y++TG+ DK VY+
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDS 40
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 29.3 bits (64), Expect = 0.12
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 67 FAACGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISADDKYI-VTGSGDKK 123
A ++ + T N L+ + + ++ D++ V +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 124 ATVYEV 129
++
Sbjct: 64 IYGIDL 69
Score = 25.1 bits (53), Expect = 3.7
Identities = 4/47 (8%), Positives = 19/47 (40%)
Query: 1 MYLQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHA 47
+ + + ++ + + + + G+ L +G +++ V +
Sbjct: 274 LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 29.0 bits (63), Expect = 0.16
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 55 LHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISAD 111
L H+ V++ CG VS DN L W G + + V S + +
Sbjct: 12 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Score = 28.6 bits (62), Expect = 0.20
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
V++C + IV+GS D V+
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSA 44
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 29.0 bits (64), Expect = 0.17
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 62 VLSLRFAACGKWFVSTGKDNLLNAWRTPYG-----ASIFQSKESSSVL-SCDISADDKY- 114
V R +A G++ G+D +N A I E+ S+ S +DKY
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 115 IVTGSGDKKATVYEVIY 131
I + + +
Sbjct: 124 IAGAYWPPQYVIMDGET 140
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 28.1 bits (62), Expect = 0.26
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 45 LHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDN 81
+ L+P + LH+H+ L+ +CG F G +
Sbjct: 36 IDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASH 72
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 150
Score = 27.8 bits (61), Expect = 0.29
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 45 LHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGKD 80
+ L + H+H + + G F K+
Sbjct: 33 IEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKN 68
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 27.7 bits (61), Expect = 0.32
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 38 ENSNVEV---LHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDN 81
N V+V + L + H+HE + + G F + +
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKH 71
>d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 27.1 bits (59), Expect = 0.47
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 80 DNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYI 115
+ LL + A+I+Q + + DIS+ +
Sbjct: 6 EALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRL 41
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.1 bits (58), Expect = 0.67
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 100 SSSVLSCDISADDKYIVTGSGDKKATVYEV 129
+ + S +SA + + V+ SGD V++
Sbjct: 14 DADIFS--VSACNSFTVSCSGDGYLKVWDN 41
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 25.2 bits (53), Expect = 3.0
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 1 MYLQSVSPGRQLQQHDFSSQIFSLGYCPSGEWLAVGMENSNVEVLHA 47
+ + +++ +S+ G + +G ++ A
Sbjct: 262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 25.3 bits (54), Expect = 3.1
Identities = 4/65 (6%), Positives = 13/65 (20%), Gaps = 2/65 (3%)
Query: 67 FAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKY--IVTGSGDKKA 124
++ G + + + D +G +
Sbjct: 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339
Query: 125 TVYEV 129
+Y+
Sbjct: 340 DIYDA 344
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 24.8 bits (52), Expect = 4.1
Identities = 5/57 (8%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 74 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYI-VTGSGDKKATVYEV 129
+++ + + ++ S+ + IS D + V + ++ +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
>d2fa1a1 d.190.1.2 (A:84-241) Probable transcriptional regulator
PhnF, receptor domain {Escherichia coli [TaxId: 562]}
Length = 158
Score = 23.9 bits (51), Expect = 6.6
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 17 FSSQIFSLGYCPSGEWLAVGMENSNVEVLHALKPDKYQLHLHESCV 62
FS + G P+ E L + ++ V AL + + +H +
Sbjct: 7 FSQNLLDQGSHPTSEKLLSVLRPASGHVADALGITEGENVIHLRTL 52
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke
(Schistosoma mansoni) [TaxId: 6183]}
Length = 156
Score = 23.9 bits (51), Expect = 6.7
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 45 LHALKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 104
LK K+ H+HE + + G F T + + + + +
Sbjct: 37 FSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQ-EHGAPEDSIRHVGDLGNVVAGADG 95
Query: 105 SCDISADDKYI 115
+ +A DK I
Sbjct: 96 NAVYNATDKLI 106
>d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309
{Caulobacter crescentus [TaxId: 155892]}
Length = 142
Score = 23.8 bits (51), Expect = 6.8
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 92 ASIFQSKESSSVLSCDISADDKYIVTGSG 120
+ ++ + I A ++ ++TG+G
Sbjct: 97 GELISEEDMLFTVRGRIWAGERTLITGTG 125
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 24.1 bits (51), Expect = 7.8
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 74 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVY 127
V+ + + +V +SA +Y++ D + +
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMI 88
>d1fjna_ g.3.7.3 (A:) Defensin MGD-1 {Mediterranean mussel
(Mytilus galloprovincialis) [TaxId: 29158]}
Length = 39
Score = 21.7 bits (46), Expect = 10.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 50 PDKYQLHLHESCVLSLRFAACGKWF 74
P+ YQ H H + CG W
Sbjct: 5 PNNYQCHRHCKSIPGRCGGYCGGWH 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.405
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 467,624
Number of extensions: 18087
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 70
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.2 bits)