BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15613
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y251|HPSE_HUMAN Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2
Length = 543
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 10/116 (8%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQS-LEFGNYSLLDWNTLEP 165
GET S GGG L+DTFAA F+W+DKLGL+AR+G+ VV+RQ GNY L+D N +P
Sbjct: 342 GETSSAYGGGAPLLSDTFAAGFMWLDKLGLSARMGIEVVMRQVFFGAGNYHLVDEN-FDP 400
Query: 166 NPDWWLSVLYKRLVDPRVLNISVPLS-HRTLRLYVQCSPAHN-------ITVFGIN 213
PD+WLS+L+K+LV +VL SV S R LR+Y+ C+ N +T++ IN
Sbjct: 401 LPDYWLSLLFKKLVGTKVLMASVQGSKRRKLRVYLHCTNTDNPRYKEGDLTLYAIN 456
>sp|Q90YK5|HPSE_CHICK Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1
Length = 523
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 10/116 (8%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQ-SLEFGNYSLLDWNTLEP 165
GETGS GGG L++T+ A F+W+DKLGLAAR G+ VV+RQ S G+Y L+D +P
Sbjct: 322 GETGSAYGGGAPQLSNTYVAGFMWLDKLGLAARRGIDVVMRQVSFGAGSYHLVDAG-FKP 380
Query: 166 NPDWWLSVLYKRLVDPRVLNISVPLSH-RTLRLYVQCS-PAH------NITVFGIN 213
PD+WLS+LYKRLV RVL SV + R R+Y+ C+ P H ++T+F +N
Sbjct: 381 LPDYWLSLLYKRLVGTRVLQASVEQADARRPRVYLHCTNPRHPKYREGDVTLFALN 436
>sp|Q71RP1|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 SV=1
Length = 536
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQS-LEFGNYSLLDWNTLEP 165
GET S GGG L+DTFAA F+W+DKLGL+A+LG+ VV+RQ GNY L+D N EP
Sbjct: 335 GETSSAYGGGAPLLSDTFAAGFMWLDKLGLSAQLGIEVVMRQVFFGAGNYHLVDEN-FEP 393
Query: 166 NPDWWLSVLYKRLVDPRVLNISVPLSHRT-LRLYVQCS 202
PD+WLS+L+K+LV P+VL V R+ LR+Y+ C+
Sbjct: 394 LPDYWLSLLFKKLVGPKVLMSRVKGPDRSKLRVYLHCT 431
>sp|Q9MYY0|HPSE_BOVIN Heparanase OS=Bos taurus GN=HPSE PE=2 SV=2
Length = 545
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSL-EFGNYSLLDWNTLEP 165
GET S GGG L++TFAA F+W+DKLGL+AR+G+ VV+RQ L GNY L+D N EP
Sbjct: 344 GETSSAFGGGAPFLSNTFAAGFMWLDKLGLSARMGIEVVMRQVLFGAGNYHLVDGN-FEP 402
Query: 166 NPDWWLSVLYKRLVDPRVLNISVPLSHRT-LRLYVQCS 202
PD+WLS+L+K+LV +VL SV R+ R+Y+ C+
Sbjct: 403 LPDYWLSLLFKKLVGNKVLMASVKGPDRSKFRVYLHCT 440
>sp|Q6YGZ1|HPSE_MOUSE Heparanase OS=Mus musculus GN=Hpse PE=1 SV=3
Length = 535
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQS-LEFGNYSLLDWNTLEP 165
GET S GGG L++TFAA F+W+DKLGL+A++G+ VV+RQ GNY L+D N EP
Sbjct: 334 GETSSAYGGGAPLLSNTFAAGFMWLDKLGLSAQMGIEVVMRQVFFGAGNYHLVDEN-FEP 392
Query: 166 NPDWWLSVLYKRLVDPRVLNISVPLSHRT-LRLYVQCS 202
PD+WLS+L+K+LV PRVL V R+ LR+Y+ C+
Sbjct: 393 LPDYWLSLLFKKLVGPRVLLSRVKGPDRSKLRVYLHCT 430
>sp|B2RY83|HPSE2_MOUSE Inactive heparanase-2 OS=Mus musculus GN=Hpse2 PE=2 SV=1
Length = 592
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 19/118 (16%)
Query: 114 GGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSL-EFGNYSLLDWNTLEPNPDWWLS 172
GG L+D++AA FLW++ LG+ A G+ VV+R S + G L+D N P PD+WLS
Sbjct: 387 AGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQN-FNPLPDYWLS 445
Query: 173 VLYKRLVDPRVLNISVPLSHR----------TLRLYVQCSPAHN-------ITVFGIN 213
+LYKRL+ P+VL + V R LR+Y C+ HN IT+F IN
Sbjct: 446 LLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIIN 503
>sp|Q8WWQ2|HPSE2_HUMAN Inactive heparanase-2 OS=Homo sapiens GN=HPSE2 PE=1 SV=3
Length = 592
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 19/118 (16%)
Query: 114 GGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSL-EFGNYSLLDWNTLEPNPDWWLS 172
GG L+D++AA FLW++ LG+ A G+ VV+R S + G L+D N P PD+WLS
Sbjct: 387 AGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQN-FNPLPDYWLS 445
Query: 173 VLYKRLVDPRVLNISVPLSHR----------TLRLYVQCSPAHN-------ITVFGIN 213
+LYKRL+ P+VL + V R LR+Y C+ HN IT+F IN
Sbjct: 446 LLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIIN 503
>sp|Q9FF10|HPSE1_ARATH Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2
SV=1
Length = 543
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSLEFGNYSLLDWNTLEPN 166
GE+G G ++DTF SF ++D+LG++AR V RQ+L G Y LL+ T PN
Sbjct: 319 GESGGAYNSGGRHVSDTFIDSFWYLDQLGMSARHNTKVYCRQTLVGGFYGLLEKGTFVPN 378
Query: 167 PDWWLSVLYKRLVDPRVLNISVPLSHRTLRLYVQCSPAH-NITVFGIN 213
PD++ ++L+ RL+ VL + LR+Y CS +T+ IN
Sbjct: 379 PDYYSALLWHRLMGKGVLAVQTD-GPPQLRVYAHCSKGRAGVTLLLIN 425
>sp|Q8L608|HPSE2_ARATH Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2
SV=1
Length = 539
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSLEFGNYSLLDWNTLEPN 166
GE G G +++TF SF ++D+LG++++ V RQ+L G Y LL+ T PN
Sbjct: 315 GEAGGAFNSGGRQVSETFINSFWYLDQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPN 374
Query: 167 PDWWLSVLYKRLVDPRVLNISVPLSHRTLRLYVQCSPAH-NITVFGIN 213
PD++ ++L+ RL+ +L + S LR YV CS IT+ IN
Sbjct: 375 PDYYSALLWHRLMGKGILGVQTTASEY-LRAYVHCSKRRAGITILLIN 421
>sp|Q9LRC8|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS
PE=1 SV=1
Length = 527
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSLEFGNYSLLDWNTLEPN 166
GE G G +G+++TF F +++ LG +A L RQ+L GNY LL T PN
Sbjct: 328 GEAGGAFNSGQDGISNTFINGFWYLNMLGYSALLDTKTFCRQTLTGGNYGLLQTGTYIPN 387
Query: 167 PDWWLSVLYKRLVDPRVLNISVPLSHRTLRLYVQCSPAHN-ITVFGIN 213
PD++ ++L+ RL+ +VL + + + + +Y C+ N IT+ +N
Sbjct: 388 PDYYSALLWHRLMGSKVLKTEI-VGTKNVYIYAHCAKKSNGITMLVLN 434
>sp|Q9FZP1|HPSE3_ARATH Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2
SV=2
Length = 536
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 107 GETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSLEFGNYSLLDWNTLEPN 166
GE+G G +++ F SF ++D+LG+A+ RQSL GNY LL+ PN
Sbjct: 318 GESGGAYNSGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPN 377
Query: 167 PDWWLSVLYKRLVDPRVLNISVPLSHRTLRLYVQCS-PAHNITVFGIN 213
PD++ ++++++L+ + L + + + +R Y C+ + ITV +N
Sbjct: 378 PDYYSALIWRQLMGRKALFTTFSGTKK-IRSYTHCARQSKGITVLLMN 424
>sp|P48920|NU5M_CHOCR NADH-ubiquinone oxidoreductase chain 5 OS=Chondrus crispus GN=ND5
PE=3 SV=1
Length = 666
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 157 LLDWNTLEPNPDWWLSVLYKRLVDPRVLNISVPLSHRTL-RLYVQCSPAHNITVF 210
LL + T N W+ VLY RL+ +LN +S + L R +++ S + T F
Sbjct: 556 LLSFFTFLINKKWYWDVLYNRLIVLPILNFGYSISFKILDRGFIELSGPYGFTKF 610
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,859,837
Number of Sequences: 539616
Number of extensions: 3585234
Number of successful extensions: 6485
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6468
Number of HSP's gapped (non-prelim): 14
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)