Query psy15613
Match_columns 219
No_of_seqs 122 out of 153
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 17:09:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 99.9 5.6E-25 1.2E-29 201.1 5.6 122 11-135 166-319 (319)
2 PF11790 Glyco_hydro_cc: Glyco 96.5 0.0041 8.9E-08 54.5 5.2 113 11-134 66-201 (239)
3 PF03662 Glyco_hydro_79n: Glyc 96.1 0.0034 7.5E-08 58.2 2.4 47 3-53 243-292 (319)
4 PF01229 Glyco_hydro_39: Glyco 95.4 0.12 2.7E-06 49.7 10.1 171 15-202 160-390 (486)
5 smart00813 Alpha-L-AF_C Alpha- 88.5 3.2 6.9E-05 35.0 8.3 94 122-215 18-125 (189)
6 PF02055 Glyco_hydro_30: O-Gly 84.5 8.2 0.00018 38.0 9.9 183 24-216 245-462 (496)
7 PF12876 Cellulase-like: Sugar 83.4 2.1 4.6E-05 31.8 4.2 64 9-81 9-88 (88)
8 PF00150 Cellulase: Cellulase 83.1 5.5 0.00012 33.9 7.2 103 11-128 122-261 (281)
9 PF06964 Alpha-L-AF_C: Alpha-L 68.3 35 0.00075 28.1 7.9 86 121-216 17-115 (177)
10 PF04725 PsbR: Photosystem II 63.0 3.1 6.6E-05 32.9 0.6 39 59-120 35-73 (99)
11 PLN00053 photosystem II subuni 59.4 3.8 8.2E-05 33.2 0.5 39 59-120 53-91 (117)
12 COG3664 XynB Beta-xylosidase [ 31.7 1E+02 0.0023 30.2 5.5 69 116-186 221-301 (428)
13 smart00633 Glyco_10 Glycosyl h 26.8 2.2E+02 0.0048 24.8 6.4 125 29-171 105-253 (254)
14 PF02449 Glyco_hydro_42: Beta- 24.0 2.7E+02 0.0059 25.6 6.8 129 23-171 209-363 (374)
15 PF12891 Glyco_hydro_44: Glyco 22.9 1E+02 0.0022 27.9 3.6 62 21-84 151-238 (239)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=99.91 E-value=5.6e-25 Score=201.06 Aligned_cols=122 Identities=28% Similarity=0.447 Sum_probs=85.3
Q ss_pred ccccccCCchhH---------HHHHHHHHHHHHHHHHhcccCCCCCcchhcc--cccchhhhHHHhhhCC-Cccccccce
Q psy15613 11 DNISAYLNPDTF---------DLLTYQITRMKNITAKHYENHVELPPLWLAE--LWSGITAESCLLETGP-KVDLINGSF 78 (219)
Q Consensus 11 ~~~~~f~n~~~~---------~~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~--~~~~~~~~~~L~~~g~-~vd~~~~sy 78 (219)
|..=|+-||++= ..+++|+.+|+++|++.|+++ ..||+++|| +++..|+++||+++|+ .||+| |+
T Consensus 166 I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~-~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~v--T~ 242 (319)
T PF03662_consen 166 IDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNA-LPGPLVVGPGGFFDADWLKEFLKASGPGVVDAV--TW 242 (319)
T ss_dssp G--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH--TT---EEEEEESS-GGGHHHHHHHTTTT--SEE--EE
T ss_pred ccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcC-CCCCeEECCCCCCCHHHHHHHHHhcCCCccCEE--EE
Confidence 556677888764 789999999999999999976 699999999 5789999999999999 59999 99
Q ss_pred eeeee--cchhhhhhhhcCcccccC----------------C--cccccCcccccCCCCCCchHHHHhHHHHHHHHH
Q psy15613 79 HLIII--RCQIHLITCLLDSEWLNL----------------P--FLCSGETGSCVGGGVEGLTDTFAASFLWIDKLG 135 (219)
Q Consensus 79 H~~s~--~~d~~~~~~i~~~~Wl~~----------------~--~~~~gEtg~A~~gG~~~vsdtF~~~f~wLD~LG 135 (219)
|+|+. +.|+++++++++|-+|+. | ..||||||+||+||+++|||||++|||||||||
T Consensus 243 H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 243 HHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 99873 778888888888866632 1 138899999999999999999999999999998
No 2
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.53 E-value=0.0041 Score=54.51 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=74.2
Q ss_pred ccccccCCchhH--------HHHHHHHHHHHHHHHHhcccCCCCCcchhcc----cccchhhhHHHhhhC--CCcccccc
Q psy15613 11 DNISAYLNPDTF--------DLLTYQITRMKNITAKHYENHVELPPLWLAE----LWSGITAESCLLETG--PKVDLING 76 (219)
Q Consensus 11 ~~~~~f~n~~~~--------~~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~----~~~~~~~~~~L~~~g--~~vd~~~~ 76 (219)
.+.-.-.|||.+ +..+..+.++.+.++. ++..+.+|.+... ..+..|+++|+++.. -.+|++
T Consensus 66 ~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~~~~D~i-- 141 (239)
T PF11790_consen 66 SKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPGGLDWLSQFLSACARGCRVDFI-- 141 (239)
T ss_pred ccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCCccHHHHHHHHhcccCCCccEE--
Confidence 445556688877 5566667777776663 7788888888433 246789999999985 699999
Q ss_pred ceeeeeecchh--hhh----hhhcCcccccCCcccccCcccccCCCCC--CchHHHHh-HHHHHHHH
Q psy15613 77 SFHLIIIRCQI--HLI----TCLLDSEWLNLPFLCSGETGSCVGGGVE--GLTDTFAA-SFLWIDKL 134 (219)
Q Consensus 77 syH~~s~~~d~--~~~----~~i~~~~Wl~~~~~~~gEtg~A~~gG~~--~vsdtF~~-~f~wLD~L 134 (219)
+.|.|....+. .-+ ++..+|+|| +|-|-...++.. .-...|+. ++-|||++
T Consensus 142 avH~Y~~~~~~~~~~i~~~~~~~~kPIWI-------TEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~ 201 (239)
T PF11790_consen 142 AVHWYGGDADDFKDYIDDLHNRYGKPIWI-------TEFGCWNGGSQGSDEQQASFLRQALPWLDSQ 201 (239)
T ss_pred EEecCCcCHHHHHHHHHHHHHHhCCCEEE-------EeecccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999322211 111 344599999 999854322222 12234544 67888876
No 3
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.10 E-value=0.0034 Score=58.24 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=30.5
Q ss_pred cceeecc-c--ccccccCCchhHHHHHHHHHHHHHHHHHhcccCCCCCcchhcc
Q psy15613 3 LGYYLNR-S--DNISAYLNPDTFDLLTYQITRMKNITAKHYENHVELPPLWLAE 53 (219)
Q Consensus 3 ~~~~~~g-~--~~~~~f~n~~~~~~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~ 53 (219)
|+|||++ + ..+++|+||..||.+...+++++++|+++-| -.|.++|+
T Consensus 243 H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p----~~~~WlGE 292 (319)
T PF03662_consen 243 HHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGP----GKPVWLGE 292 (319)
T ss_dssp EEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH-------EEEEE
T ss_pred EecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCC----CCCeEEeC
Confidence 7888974 4 4579999999999999999999999999988 35788888
No 4
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=95.41 E-value=0.12 Score=49.67 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=84.3
Q ss_pred ccCCchhHH---------HHHHHHHHHHHHHHHhcccCCCCCcchhcccccchhhhHHHhh---hCCCccccccceeeee
Q psy15613 15 AYLNPDTFD---------LLTYQITRMKNITAKHYENHVELPPLWLAELWSGITAESCLLE---TGPKVDLINGSFHLII 82 (219)
Q Consensus 15 ~f~n~~~~~---------~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~~~~~~~~~~~L~~---~g~~vd~~~~syH~~s 82 (219)
|..|||++. .+.+=.+...+.||+..|+...-||... .....|+++|++- .+.++|.+ |+|.|.
T Consensus 160 EiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~--~~~~~~~~~~l~~~~~~~~~~Dfi--S~H~y~ 235 (486)
T PF01229_consen 160 EIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFA--WAYDEWCEDFLEFCKGNNCPLDFI--SFHSYG 235 (486)
T ss_dssp EESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEE--TT-THHHHHHHHHHHHCT---SEE--EEEEE-
T ss_pred EeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCcccc--ccHHHHHHHHHHHHhcCCCCCCEE--EEEecc
Confidence 667887762 3333345556668999997777777221 1225677777644 44589999 999973
Q ss_pred ec------------chh--hhhh------hh-c------CcccccCCcccccCcccccCCCCCCchH-HHHhHHHHHHHH
Q psy15613 83 IR------------CQI--HLIT------CL-L------DSEWLNLPFLCSGETGSCVGGGVEGLTD-TFAASFLWIDKL 134 (219)
Q Consensus 83 ~~------------~d~--~~~~------~i-~------~~~Wl~~~~~~~gEtg~A~~gG~~~vsd-tF~~~f~wLD~L 134 (219)
.. .+. ...+ ++ . .|+.+ +|-+.....-.. .-| .|.+++. +..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~-------tE~n~~~~~~~~-~~dt~~~aA~i-~k~- 305 (486)
T PF01229_consen 236 TDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNLPLYI-------TEWNASISPRNP-QHDTCFKAAYI-AKN- 305 (486)
T ss_dssp BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEE-------EEEES-SSTT-G-GGGSHHHHHHH-HH--
T ss_pred cccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceee-------cccccccCCCcc-hhccccchhhH-HHH-
Confidence 21 111 0111 11 1 22334 886655443333 333 4666654 222
Q ss_pred HHHHhcC--ceEEEeee-------------cccCccccccCCCCCCChhhHHHHHHhHhcCCceeeeecc-----CCCCc
Q psy15613 135 GLAARLG--VSVVVRQS-------------LEFGNYSLLDWNTLEPNPDWWLSVLYKRLVDPRVLNISVP-----LSHRT 194 (219)
Q Consensus 135 G~~A~~g--~~vv~Rq~-------------L~gg~YgLld~~t~~P~PDYw~sLL~krLmG~~VL~~~~~-----~~~~~ 194 (219)
+....| ++.+.-.+ .+.|.+||+... -.|.|.|++--+.++| |.+++..... ..++.
T Consensus 306 -lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~~~~~~~vt~~~~~~ 382 (486)
T PF01229_consen 306 -LLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVAKGDHYIVTSKDDGS 382 (486)
T ss_dssp -HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC-CEE-HHHHHHHHHTT---SEEEEEETTEEEEE-TTS-
T ss_pred -HHHhhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc-CCCchHHHHHHHHHhh-CceeEecCCCceeEEcCCCe
Confidence 222221 23333222 234668999988 7899999999999999 7777653321 12346
Q ss_pred eEEEEeec
Q psy15613 195 LRLYVQCS 202 (219)
Q Consensus 195 lrvYaHC~ 202 (219)
+.+.+++.
T Consensus 383 ~~il~~n~ 390 (486)
T PF01229_consen 383 VQILVWNH 390 (486)
T ss_dssp EEEEEEE-
T ss_pred EEEEEecC
Confidence 66666653
No 5
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=88.54 E-value=3.2 Score=34.99 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=61.1
Q ss_pred HHHHhHHHHHHHHHHHHhcCceEEE---eeecccCccccccCC--CCCCChhhHHHHHHhHhcCCceeeeeccCC-----
Q psy15613 122 DTFAASFLWIDKLGLAARLGVSVVV---RQSLEFGNYSLLDWN--TLEPNPDWWLSVLYKRLVDPRVLNISVPLS----- 191 (219)
Q Consensus 122 dtF~~~f~wLD~LG~~A~~g~~vv~---Rq~L~gg~YgLld~~--t~~P~PDYw~sLL~krLmG~~VL~~~~~~~----- 191 (219)
.++.+++-+.--|-..=|++-.|.| .|.+-.-+-.++..+ .....|.||+--||.+.+|.++|++.+..+
T Consensus 18 ~tl~dAL~~A~~l~~~~Rn~D~V~ma~~A~lvn~~~p~~i~~~~~~~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~ 97 (189)
T smart00813 18 YTLRDALAEAAFLNGLERNSDRVKMASYAQLVNVINPDMLTFNGGQAWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGE 97 (189)
T ss_pred CcHHHHHHHHHHHHHHHhccCcEEeehhhhhhccccceEEEeCCCCEEECCcCHHHHHhhhhCCceEEEEEeeCCccccC
Confidence 5677777777777777676655544 222212122233332 366789999999999999999999886542
Q ss_pred ---CCceEEEEeecCCC-ceEEEEEeCC
Q psy15613 192 ---HRTLRLYVQCSPAH-NITVFGINSP 215 (219)
Q Consensus 192 ---~~~lrvYaHC~~~~-~iTll~INl~ 215 (219)
.+.|-+-|-...++ .++|.+||.+
T Consensus 98 ~~~~~~ld~sA~~~~~~~~~~v~vvN~~ 125 (189)
T smart00813 98 DSDVPALDASASKDEDGGSLTVKVVNRS 125 (189)
T ss_pred cccCCcEEEEEEEeCCCCEEEEEEEeCC
Confidence 13455555443333 7999999986
No 6
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=84.54 E-value=8.2 Score=37.96 Aligned_cols=183 Identities=13% Similarity=0.068 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHh-cccCCCCCc--chhccccc------chhhhHHHhh--hCCCccccccceeeeeecchhhhhh-
Q psy15613 24 LLTYQITRMKNITAKH-YENHVELPP--LWLAELWS------GITAESCLLE--TGPKVDLINGSFHLIIIRCQIHLIT- 91 (219)
Q Consensus 24 ~~~~~~~~l~~~v~~~-~p~~~~~gP--~~~~~~~~------~~~~~~~L~~--~g~~vd~~~~syH~~s~~~d~~~~~- 91 (219)
...-..++.+++|+.+ -|--...+| ++.--.+| ..|....|+. +.+-||.+ .+|-|.....+....
T Consensus 245 s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~Gi--A~HwY~g~~~~~~l~~ 322 (496)
T PF02055_consen 245 SMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGI--AFHWYGGDPSPQALDQ 322 (496)
T ss_dssp --B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEE--EEEETTCS-HCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEE--EEECCCCCchhhHHHH
Confidence 4444456666666653 443333333 22211222 3566777763 44568888 899986532222111
Q ss_pred ---hh-cCcccccCCcccccCcccccCCCCCCc-hHHHHhHHHHHHH-HHHHHhcCceEEEeeecc----cC-c----c-
Q psy15613 92 ---CL-LDSEWLNLPFLCSGETGSCVGGGVEGL-TDTFAASFLWIDK-LGLAARLGVSVVVRQSLE----FG-N----Y- 155 (219)
Q Consensus 92 ---~i-~~~~Wl~~~~~~~gEtg~A~~gG~~~v-sdtF~~~f~wLD~-LG~~A~~g~~vv~Rq~L~----gg-~----Y- 155 (219)
+- .+.+|. +|++.........+ ...+..+..|..- ++- =+++...++-..|+ || + +
T Consensus 323 ~h~~~P~k~l~~-------TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~-lnn~~~gw~~WNl~LD~~GGP~~~~n~~ 394 (496)
T PF02055_consen 323 VHNKFPDKFLLF-------TEACCGSWNWDTSVDLGSWDRAERYAHDIIGD-LNNWVSGWIDWNLALDENGGPNWVGNFC 394 (496)
T ss_dssp HHHHSTTSEEEE-------EEEESS-STTS-SS-TTHHHHHHHHHHHHHHH-HHTTEEEEEEEESEBETTS---TT---B
T ss_pred HHHHCCCcEEEe-------eccccCCCCcccccccccHHHHHHHHHHHHHH-HHhhceeeeeeeeecCCCCCCcccCCCC
Confidence 11 145777 88764322211111 1245555555543 443 36688887777765 44 1 1
Q ss_pred ---ccccC--CCCCCChhhHHHHHHhHhcCC--ceeeeeccCCCCceEEEEeecCCCceEEEEEeCCC
Q psy15613 156 ---SLLDW--NTLEPNPDWWLSVLYKRLVDP--RVLNISVPLSHRTLRLYVQCSPAHNITVFGINSPS 216 (219)
Q Consensus 156 ---gLld~--~t~~P~PDYw~sLL~krLmG~--~VL~~~~~~~~~~lrvYaHC~~~~~iTll~INl~~ 216 (219)
.++|. +++.-+|.||..==|.|+|=+ ..++++.......|.+=|--..++++++.++|.+.
T Consensus 395 d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvVv~N~~~ 462 (496)
T PF02055_consen 395 DAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVVVLNRGD 462 (496)
T ss_dssp --SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEEEEE-SS
T ss_pred CceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEEEEEcCCC
Confidence 12443 467889999998889999854 44554443323478888888888899999999764
No 7
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=83.43 E-value=2.1 Score=31.78 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=36.1
Q ss_pred ccccccccCCc-hh--------------HHHHHHHHHHHHHHHHHhcccCCCCCcchhcccccchhhhHHHhhhC-CCcc
Q psy15613 9 RSDNISAYLNP-DT--------------FDLLTYQITRMKNITAKHYENHVELPPLWLAELWSGITAESCLLETG-PKVD 72 (219)
Q Consensus 9 g~~~~~~f~n~-~~--------------~~~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~~~~~~~~~~~L~~~g-~~vd 72 (219)
.+|-.=|+.|| |+ -+.+.+-.++..+++++..|+.+. +.|- ... ..+-++... +.+|
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pv----t~g~-~~~--~~~~~~~~~~~~~D 81 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPV----TSGF-WGG--DWEDLEQLQAENLD 81 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-E----E--B---S---TTHHHHS--TT-S
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcE----Eeec-ccC--CHHHHHHhchhcCC
Confidence 34666788888 66 145667788999999999994443 3332 221 112255555 7899
Q ss_pred ccccceeee
Q psy15613 73 LINGSFHLI 81 (219)
Q Consensus 73 ~~~~syH~~ 81 (219)
++ |+|.|
T Consensus 82 vi--sfH~Y 88 (88)
T PF12876_consen 82 VI--SFHPY 88 (88)
T ss_dssp SE--EB-EE
T ss_pred EE--eeecC
Confidence 99 99986
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=83.07 E-value=5.5 Score=33.85 Aligned_cols=103 Identities=14% Similarity=0.002 Sum_probs=57.3
Q ss_pred ccccccCCchhHH------------HHHHHHHHHHHHHHHhcccCCCCCcchhcc-cccchhhhHHHh--hhCCCccccc
Q psy15613 11 DNISAYLNPDTFD------------LLTYQITRMKNITAKHYENHVELPPLWLAE-LWSGITAESCLL--ETGPKVDLIN 75 (219)
Q Consensus 11 ~~~~~f~n~~~~~------------~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~-~~~~~~~~~~L~--~~g~~vd~~~ 75 (219)
+-.-|.+|||... .+.+-.+++.+.|++.-|+. |-++++ .++......+.+ ......+++
T Consensus 122 v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~----~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~- 196 (281)
T PF00150_consen 122 VVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH----LIIVGGGGWGADPDGAAADNPNDADNNDVY- 196 (281)
T ss_dssp TEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS----EEEEEEHHHHTBHHHHHHHSTTTTTTSEEE-
T ss_pred EEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc----eeecCCCccccccchhhhcCcccccCceeE-
Confidence 5566899999983 45666788888888887753 223332 122211111111 112356788
Q ss_pred cceeeeeecchh-----------hh----hh-------hhcCcccccCCcccccCcccccCCCCCCchHHHHhHH
Q psy15613 76 GSFHLIIIRCQI-----------HL----IT-------CLLDSEWLNLPFLCSGETGSCVGGGVEGLTDTFAASF 128 (219)
Q Consensus 76 ~syH~~s~~~d~-----------~~----~~-------~i~~~~Wl~~~~~~~gEtg~A~~gG~~~vsdtF~~~f 128 (219)
+.|+|.+...+ .. .+ +.-.|+|+ ||.|....++. .+.++...+
T Consensus 197 -~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~pv~~-------gE~G~~~~~~~--~~~~~~~~~ 261 (281)
T PF00150_consen 197 -SFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAKKNGKPVVV-------GEFGWSNNDGN--GSTDYADAW 261 (281)
T ss_dssp -EEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHHHTTSEEEE-------EEEESSTTTSC--HHHHHHHHH
T ss_pred -EeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHHHcCCeEEE-------eCcCCcCCCCC--cCHHHHHHH
Confidence 99998642110 00 01 11268888 99999866664 334444443
No 9
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=68.31 E-value=35 Score=28.14 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=55.3
Q ss_pred hHHHHhHHHHHHHHHHHHhcC--ceEEEeeecccCcc------cccc--CCCCCCChhhHHHHHHhHhcCCceeeeeccC
Q psy15613 121 TDTFAASFLWIDKLGLAARLG--VSVVVRQSLEFGNY------SLLD--WNTLEPNPDWWLSVLYKRLVDPRVLNISVPL 190 (219)
Q Consensus 121 sdtF~~~f~wLD~LG~~A~~g--~~vv~Rq~L~gg~Y------gLld--~~t~~P~PDYw~sLL~krLmG~~VL~~~~~~ 190 (219)
..+..+++.-.--|-..=|++ ++.-|--.|+.-.- .||- .+...+.|.||+--||.+..|.++|
T Consensus 17 ~~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l------ 90 (177)
T PF06964_consen 17 RYTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL------ 90 (177)
T ss_dssp --BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE------
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe------
Confidence 356666666666667777777 44445555553221 3443 3346789999999999999999999
Q ss_pred CCCceEEEEeecC--CC-ceEEEEEeCCC
Q psy15613 191 SHRTLRLYVQCSP--AH-NITVFGINSPS 216 (219)
Q Consensus 191 ~~~~lrvYaHC~~--~~-~iTll~INl~~ 216 (219)
+. +|+-++. ++ .++|.+||.+.
T Consensus 91 --~~--l~~~As~d~~~~~l~v~vVN~~~ 115 (177)
T PF06964_consen 91 --PP--LDVSASRDEDGGELYVKVVNRSS 115 (177)
T ss_dssp --ES--EEEEEEEETTTTEEEEEEEE-SS
T ss_pred --cc--EEEEEEEECCCCEEEEEEEECCC
Confidence 23 4444443 33 69999999853
No 10
>PF04725 PsbR: Photosystem II 10 kDa polypeptide PsbR; InterPro: IPR006814 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight intrinsic protein PsbR found in PSII, which is also known as the 10 kDa polypeptide. The PsbR gene is found only in the nucleus of green algae and higher plants. PsbR may provide a binding site for the extrinsic oxygen-evolving complex protein PsbP to the thylakoid membrane. PsbR has a transmembrane domain to anchor it to the thylakoid membrane, and a charged N-terminal domain capable of forming ion bridges with extrinsic proteins, allowing PsbR to act as a docking protein. PsbR may be a pH-dependent stabilising protein that functions at both donor and acceptor sides of PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0042651 thylakoid membrane
Probab=63.03 E-value=3.1 Score=32.86 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=30.6
Q ss_pred hhhHHHhhhCCCccccccceeeeeecchhhhhhhhcCcccccCCcccccCcccccCCCCCCc
Q psy15613 59 TAESCLLETGPKVDLINGSFHLIIIRCQIHLITCLLDSEWLNLPFLCSGETGSCVGGGVEGL 120 (219)
Q Consensus 59 ~~~~~L~~~g~~vd~~~~syH~~s~~~d~~~~~~i~~~~Wl~~~~~~~gEtg~A~~gG~~~v 120 (219)
-.=+|.++.|.+||-+ .|+|. |..| .|+|..|-||..++
T Consensus 35 gVYqf~~KyGANVDgY--------------------SPIY~--p~~W-s~~GD~Y~gGt~gL 73 (99)
T PF04725_consen 35 GVYQFVDKYGANVDGY--------------------SPIYT--PDEW-SPSGDVYVGGTTGL 73 (99)
T ss_pred eeEEehhhcCcccccc--------------------CCCcC--hhhc-CCCCCeecCChhhH
Confidence 3446777778888877 67776 7888 99999999998864
No 11
>PLN00053 photosystem II subunit R; Provisional
Probab=59.39 E-value=3.8 Score=33.16 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=30.2
Q ss_pred hhhHHHhhhCCCccccccceeeeeecchhhhhhhhcCcccccCCcccccCcccccCCCCCCc
Q psy15613 59 TAESCLLETGPKVDLINGSFHLIIIRCQIHLITCLLDSEWLNLPFLCSGETGSCVGGGVEGL 120 (219)
Q Consensus 59 ~~~~~L~~~g~~vd~~~~syH~~s~~~d~~~~~~i~~~~Wl~~~~~~~gEtg~A~~gG~~~v 120 (219)
-.=+|.++.|.+||.+ .|++. |..| .|+|..|-||..++
T Consensus 53 GVYqFvdKYGANVDgY--------------------SPIY~--~~ew-s~~Gd~Y~ggttgL 91 (117)
T PLN00053 53 GVYQFVDKYGANVDGY--------------------SPIYT--PDEW-SPSGDVYVGGTTGL 91 (117)
T ss_pred ceEEehhhcCcccccc--------------------CCCcC--hhhc-CCCCCeeeCChhhH
Confidence 3446777778887777 56666 7778 89999999998864
No 12
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=31.69 E-value=1e+02 Score=30.20 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCCchHHHHhHHHHHHHHHHHHh--------cCceEE---Eeeecc-cCccccccCCCCCCChhhHHHHHHhHhcCCce
Q psy15613 116 GVEGLTDTFAASFLWIDKLGLAAR--------LGVSVV---VRQSLE-FGNYSLLDWNTLEPNPDWWLSVLYKRLVDPRV 183 (219)
Q Consensus 116 G~~~vsdtF~~~f~wLD~LG~~A~--------~g~~vv---~Rq~L~-gg~YgLld~~t~~P~PDYw~sLL~krLmG~~V 183 (219)
+..-+.++|++|=-.+.+|--++. ...+.. |++... -|..+|.+.- -.-+|-|++++.+.|| |..+
T Consensus 221 ~~~~~n~sy~raa~i~~~Lr~~g~~v~a~~yW~~sdl~e~~g~~~~~~~~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~ 298 (428)
T COG3664 221 PREPTNGSYVRAAYIMRLLREAGSPVDAFGYWTNSDLHEEHGPPEAPFVGGFELFAPY-GGRRPAWMAALFFNRL-GRTL 298 (428)
T ss_pred CccccCceeehHHHHHHHHHhcCChhhhhhhhhcccccccCCCcccccccceeeeccc-ccchhHHHHHHHHHHH-HHHh
Confidence 444467888886555554432221 112233 555544 3445777764 5789999999999999 9888
Q ss_pred eee
Q psy15613 184 LNI 186 (219)
Q Consensus 184 L~~ 186 (219)
|.-
T Consensus 299 l~~ 301 (428)
T COG3664 299 LSW 301 (428)
T ss_pred hhc
Confidence 863
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=26.81 E-value=2.2e+02 Score=24.82 Aligned_cols=125 Identities=19% Similarity=0.100 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcccCCCCCcchhccccc----------chhhhHHHhhhCCCccccccceeeeeecchhhhh----h---
Q psy15613 29 ITRMKNITAKHYENHVELPPLWLAELWS----------GITAESCLLETGPKVDLINGSFHLIIIRCQIHLI----T--- 91 (219)
Q Consensus 29 ~~~l~~~v~~~~p~~~~~gP~~~~~~~~----------~~~~~~~L~~~g~~vd~~~~syH~~s~~~d~~~~----~--- 91 (219)
+..-++++++.-|+... .+.. ++ ...+-+-|.+.|.++|.+-.-.|..+..-++..+ +
T Consensus 105 i~~af~~ar~~~P~a~l----~~Nd-y~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~ 179 (254)
T smart00633 105 IEKAFRYAREADPDAKL----FYND-YNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFA 179 (254)
T ss_pred HHHHHHHHHHhCCCCEE----EEec-cCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHH
Confidence 55677888888885221 1111 11 1233334455577899996667765322122212 2
Q ss_pred hhcCcccccCCcccccCcccccCCCCCCchHHHHhHHHHHHHHHHHHhcCceEEEeeecccC-------ccccccCCCCC
Q psy15613 92 CLLDSEWLNLPFLCSGETGSCVGGGVEGLTDTFAASFLWIDKLGLAARLGVSVVVRQSLEFG-------NYSLLDWNTLE 164 (219)
Q Consensus 92 ~i~~~~Wl~~~~~~~gEtg~A~~gG~~~vsdtF~~~f~wLD~LG~~A~~g~~vv~Rq~L~gg-------~YgLld~~t~~ 164 (219)
..-.|+|+ +|..-...... ..=+.-+.-+=++..+-. +++.|+=..+..+ +=+|+|.+ +.
T Consensus 180 ~~g~pi~i-------TE~dv~~~~~~----~~qA~~~~~~l~~~~~~p-~v~gi~~Wg~~d~~~W~~~~~~~L~d~~-~~ 246 (254)
T smart00633 180 SLGLEIQI-------TELDISGYPNP----QAQAADYEEVFKACLAHP-AVTGVTVWGVTDKYSWLDGGAPLLFDAN-YQ 246 (254)
T ss_pred HcCCceEE-------EEeecCCCCcH----HHHHHHHHHHHHHHHcCC-CeeEEEEeCCccCCcccCCCCceeECCC-CC
Confidence 22378998 99886543210 111111222212222222 4455544444422 23789988 99
Q ss_pred CChhhHH
Q psy15613 165 PNPDWWL 171 (219)
Q Consensus 165 P~PDYw~ 171 (219)
|+|-|+.
T Consensus 247 ~kpa~~~ 253 (254)
T smart00633 247 PKPAYWA 253 (254)
T ss_pred CChhhhc
Confidence 9998863
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=23.99 E-value=2.7e+02 Score=25.61 Aligned_cols=129 Identities=13% Similarity=0.027 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchhcccccc-hhhhHHHhhhCCCccccccceeeeeecc------hhh-------
Q psy15613 23 DLLTYQITRMKNITAKHYENHVELPPLWLAELWSG-ITAESCLLETGPKVDLINGSFHLIIIRC------QIH------- 88 (219)
Q Consensus 23 ~~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~~~~~-~~~~~~L~~~g~~vd~~~~syH~~s~~~------d~~------- 88 (219)
+.+...+..+.++|+++.|+.+.+. .+.+. ...-|... ..+.+|++ +++.|..+. ++.
T Consensus 209 ~~~~~~~~~~~~~ir~~~p~~~vt~-----n~~~~~~~~~d~~~-~a~~~D~~--~~d~Y~~~~~~~~~~~~~~~a~~~d 280 (374)
T PF02449_consen 209 DRVAEFFRWQADIIREYDPDHPVTT-----NFMGSWFNGIDYFK-WAKYLDVV--SWDSYPDGSFDFYDDDPYSLAFNHD 280 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-EEE------EE-TT---SS-HHH-HGGGSSSE--EEEE-HHHHHTTTT--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEe-----CccccccCcCCHHH-HHhhCCcc--eeccccCcccCCCCCCHHHHHHHHH
Confidence 5556667888899999988544332 22221 11122222 23578999 999875411 111
Q ss_pred hhhhh--cCcccccCCcccccCcccccCCCC-C--CchHHHHhHHHHHHHHHHHHhcCceEEE----eeeccc---Cccc
Q psy15613 89 LITCL--LDSEWLNLPFLCSGETGSCVGGGV-E--GLTDTFAASFLWIDKLGLAARLGVSVVV----RQSLEF---GNYS 156 (219)
Q Consensus 89 ~~~~i--~~~~Wl~~~~~~~gEtg~A~~gG~-~--~vsdtF~~~f~wLD~LG~~A~~g~~vv~----Rq~L~g---g~Yg 156 (219)
++..+ -+|.|+ .|+.+...+-. . ....-.+ ..|.+..++ +|.+.++ ||...| ..+|
T Consensus 281 l~R~~~~~kpf~v-------~E~~~g~~~~~~~~~~~~pg~~-~~~~~~~~A----~Ga~~i~~~~wr~~~~g~E~~~~g 348 (374)
T PF02449_consen 281 LMRSLAKGKPFWV-------MEQQPGPVNWRPYNRPPRPGEL-RLWSWQAIA----HGADGILFWQWRQSRFGAEQFHGG 348 (374)
T ss_dssp HHHHHTTT--EEE-------EEE--S--SSSSS-----TTHH-HHHHHHHHH----TT-S-EEEC-SB--SSSTTTTS--
T ss_pred HHHhhcCCCceEe-------ecCCCCCCCCccCCCCCCCCHH-HHHHHHHHH----HhCCeeEeeeccCCCCCchhhhcc
Confidence 11222 388999 88855322211 1 1111222 233333333 4555554 777775 3789
Q ss_pred cccCCCCCCChhhHH
Q psy15613 157 LLDWNTLEPNPDWWL 171 (219)
Q Consensus 157 Lld~~t~~P~PDYw~ 171 (219)
|||.+--.|++-|-.
T Consensus 349 ~~~~dg~~~~~~~~e 363 (374)
T PF02449_consen 349 LVDHDGREPTRRYRE 363 (374)
T ss_dssp SB-TTS--B-HHHHH
T ss_pred cCCccCCCCCcHHHH
Confidence 999984488876653
No 15
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=22.88 E-value=1e+02 Score=27.90 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcchhcc-c-----c------------cchhhhHHHh-------hhCC-Ccccc
Q psy15613 21 TFDLLTYQITRMKNITAKHYENHVELPPLWLAE-L-----W------------SGITAESCLL-------ETGP-KVDLI 74 (219)
Q Consensus 21 ~~~~~~~~~~~l~~~v~~~~p~~~~~gP~~~~~-~-----~------------~~~~~~~~L~-------~~g~-~vd~~ 74 (219)
+.+.|..-..++-+.||+.-|+....||..-|= + . +..|.+=||+ ++|. -+|+|
T Consensus 151 t~~El~~r~i~~AkaiK~~DP~a~v~GP~~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvl 230 (239)
T PF12891_consen 151 TYDELRDRSIEYAKAIKAADPDAKVFGPVEWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVL 230 (239)
T ss_dssp -HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEE
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCeEeechhhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeee
Confidence 348888889999999999999999988875442 0 1 1235555565 6675 78999
Q ss_pred ccceeeeeec
Q psy15613 75 NGSFHLIIIR 84 (219)
Q Consensus 75 ~~syH~~s~~ 84 (219)
.-|+|++.
T Consensus 231 --DiH~YPq~ 238 (239)
T PF12891_consen 231 --DIHYYPQA 238 (239)
T ss_dssp --EEEE--SS
T ss_pred --eeeecCCC
Confidence 88988753
Done!