RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15613
         (219 letters)



>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
           {Pseudonocardia thermophila [TaxId: 1848]}
          Length = 203

 Score = 27.0 bits (60), Expect = 1.5
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 160 WNTLEPNPDWWLSVLYK-RLV-DPR 182
           W  L   P+W+    Y+ R+V +PR
Sbjct: 115 WPVLGLPPNWFKEPQYRSRVVREPR 139


>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
           {Bacillus smithii [TaxId: 1479]}
          Length = 203

 Score = 26.2 bits (58), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 160 WNTLEPNPDWWLSVLYK-RLV-DPR 182
           W  L   P W+    Y+ R+V +PR
Sbjct: 114 WPLLGLPPSWYKEPAYRSRVVKEPR 138


>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 97

 Score = 25.1 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 158 LDWNTLEPNPDWWLSVLYK 176
           LDW  LEP    WL VL++
Sbjct: 73  LDWMRLEPQSMVWLPVLHR 91


>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
           thermophilus [TaxId: 274]}
          Length = 393

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 8/51 (15%)

Query: 130 WIDKLGLAARLGVSVVVRQSLEFGNYSLLDWNTLEPNPDWWLSVLYKRLVD 180
           W +        G+S V       G ++   W  LEP P           + 
Sbjct: 16  WKEDARRMREAGLSHV-----RIGEFA---WALLEPEPGRLEWGWLDEAIA 58


>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
           {Rhodococcus erythropolis [TaxId: 1833]}
          Length = 197

 Score = 25.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 160 WNTLEPNPDWWLSVLYK-RLV-DPR 182
           W  L   P W+ S  Y+ R+V +PR
Sbjct: 109 WPILGLPPTWYKSFEYRARVVREPR 133


>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
           regulatory subunit HisZ {Lactococcus lactis [TaxId:
           1358]}
          Length = 318

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 16  YLNPD-TFDLLTYQITRMKNITAK---HYENH----VELPPLWLAELWSGITAESCLLET 67
           YL P+ + ++   Q+  ++ I  +    +       V  P     +L++ + +       
Sbjct: 1   YLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQ 60

Query: 68  GPKVDLINGSFHLIIIRCQIHLITCLLDSEWLN 100
                 I      I +R    L    L S+  +
Sbjct: 61  EKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKD 93


>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
           {Clostridium absonum [TaxId: 29369]}
          Length = 249

 Score = 24.6 bits (53), Expect = 8.8
 Identities = 5/41 (12%), Positives = 10/41 (24%)

Query: 4   GYYLNRSDNISAYLNPDTFDLLTYQITRMKNITAKHYENHV 44
           GY  + +       N +  +                Y +H 
Sbjct: 168 GYNTDDAFYKDTLKNDNFNEWSKGYCKYWAKKAKNLYYSHA 208


>d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides
          thetaiotaomicron [TaxId: 818]}
          Length = 149

 Score = 24.4 bits (52), Expect = 9.9
 Identities = 5/56 (8%), Positives = 13/56 (23%)

Query: 1  MNLGYYLNRSDNISAYLNPDTFDLLTYQITRMKNITAKHYENHVELPPLWLAELWS 56
          + +G   N   N + +   D    +                  ++  P    +   
Sbjct: 25 LTMGVLGNHLLNCAGFHASDRGFGIATLNEDNYTWVLSRLAIELDEMPYQYEKFSV 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 877,732
Number of extensions: 40715
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 9
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)