BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15615
(904 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCA9|SPCS3_DROME Signal peptidase complex subunit 3 OS=Drosophila melanogaster
GN=Spase22-23 PE=2 SV=1
Length = 179
Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats.
Identities = 83/123 (67%), Positives = 97/123 (78%), Gaps = 6/123 (4%)
Query: 160 NLLLCYKSNLIPITTYIQY----NSSPVRQNLLLKNVPDYSASREENDLGFITFDLQANL 215
++L C + T ++ Y N + VR +L+KNVPDY ASRE++DLGF+TFDLQ NL
Sbjct: 17 SVLACLTFSCFLSTVFLDYRTDANINTVR--VLVKNVPDYGASREKHDLGFVTFDLQTNL 74
Query: 216 TKIFNWNVKQLFLYLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGK 275
T IFNWNVKQLFLYLTAEY TP+N LNQVVLWD+IILRG+NA L FKNMNTKYYFWDDG
Sbjct: 75 TGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGN 134
Query: 276 GLK 278
GLK
Sbjct: 135 GLK 137
>sp|P61009|SPCS3_HUMAN Signal peptidase complex subunit 3 OS=Homo sapiens GN=SPCS3 PE=1
SV=1
Length = 180
Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/110 (60%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
ITT + S PVR ++LKNV D++ RE +DLGFITFD+ A+L IF+WNVKQLFL
Sbjct: 28 ITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFL 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YL+AEY T +N LNQVVLWD+I+LRG+N L K+M TKY+F+DDG GLK
Sbjct: 88 YLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLK 137
>sp|P61008|SPCS3_CANFA Signal peptidase complex subunit 3 OS=Canis familiaris GN=SPCS3
PE=1 SV=1
Length = 180
Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/110 (60%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
ITT + S PVR ++LKNV D++ RE +DLGFITFD+ A+L IF+WNVKQLFL
Sbjct: 28 ITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFL 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YL+AEY T +N LNQVVLWD+I+LRG+N L K+M TKY+F+DDG GLK
Sbjct: 88 YLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLK 137
>sp|Q3SZU5|SPCS3_BOVIN Signal peptidase complex subunit 3 OS=Bos taurus GN=SPCS3 PE=2 SV=1
Length = 180
Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/110 (60%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
ITT + S PVR ++LKNV D++ RE +DLGFITFD+ A+L IF+WNVKQLFL
Sbjct: 28 ITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFL 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YL+AEY T +N LNQVVLWD+I+LRG+N L K+M TKY+F+DDG GLK
Sbjct: 88 YLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLK 137
>sp|Q568Z4|SPCS3_RAT Signal peptidase complex subunit 3 OS=Rattus norvegicus GN=Spcs3
PE=2 SV=1
Length = 180
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
+TT + S+PVR +LLK V D++ R+++DLGFITF + A+L K F+WNVKQLFL
Sbjct: 28 LTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWNVKQLFL 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YL+AEY T SN +NQVVLWD+I+LRGEN L K++ +KY+F+DDG GLK
Sbjct: 88 YLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFDDGHGLK 137
>sp|Q9D365|SPCS3_MOUSE Signal peptidase complex subunit 3 OS=Mus musculus GN=Spcs3 PE=2
SV=1
Length = 180
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
+TT + S+PVR +LLK V D++ R+++DLGFITF + A+L K F+WNVKQLFL
Sbjct: 28 LTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWNVKQLFL 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YL+AEY T SN +NQVVLWD+I+LRGEN L K++ +KY+F+DDG GLK
Sbjct: 88 YLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFDDGHGLK 137
>sp|P28687|SPCS3_CHICK Signal peptidase complex subunit 3 OS=Gallus gallus GN=SPC22 PE=1
SV=1
Length = 180
Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
ITT + S PV + L+NV D++ RE +DL F+TFD+ A+L IF+WNVKQLFL
Sbjct: 28 ITTAFKERSVPVSIAVSRVTLRNVEDFTGPRERSDLAFVTFDITADLQSIFDWNVKQLFL 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YL+AEY T +N LNQVVLWD+IILRG+N L K+M +KY+F+DDG GLK
Sbjct: 88 YLSAEYSTKNNALNQVVLWDKIILRGDNPRLFLKDMKSKYFFFDDGNGLK 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.139 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,699,969
Number of Sequences: 539616
Number of extensions: 33613546
Number of successful extensions: 645392
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 3468
Number of HSP's that attempted gapping in prelim test: 156378
Number of HSP's gapped (non-prelim): 152035
length of query: 904
length of database: 191,569,459
effective HSP length: 127
effective length of query: 777
effective length of database: 123,038,227
effective search space: 95600702379
effective search space used: 95600702379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)