Query psy15615
Match_columns 904
No_of_seqs 173 out of 254
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 17:12:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00116 signal peptidase; Pro 100.0 1.4E-35 3E-40 292.3 6.5 124 156-279 5-136 (185)
2 PF04573 SPC22: Signal peptida 100.0 8.7E-35 1.9E-39 283.7 7.2 115 165-279 21-138 (175)
3 KOG3372|consensus 100.0 7.5E-35 1.6E-39 283.9 5.6 107 172-279 28-138 (176)
4 KOG0994|consensus 65.1 5.8 0.00013 50.3 3.6 78 131-215 39-131 (1758)
5 KOG2695|consensus 42.2 22 0.00049 40.6 3.2 137 133-273 170-328 (425)
6 PRK13737 conjugal transfer pil 38.4 21 0.00044 40.2 2.2 93 34-140 128-245 (330)
7 cd04039 C2_PSD C2 domain prese 35.5 1.9E+02 0.0041 26.6 7.6 33 241-273 68-104 (108)
8 COG4114 FhuF Uncharacterized F 35.2 22 0.00048 38.5 1.8 61 43-103 117-177 (251)
9 KOG2111|consensus 32.5 39 0.00084 38.2 3.1 60 215-278 52-128 (346)
10 cd07296 PX_PLD1 The phosphoino 30.4 54 0.0012 32.8 3.4 37 186-225 5-43 (135)
11 PF05317 Thermopsin: Thermopsi 29.0 2.2E+02 0.0049 31.1 8.0 67 182-253 39-106 (265)
12 PF08411 Exonuc_X-T_C: Exonucl 25.5 20 0.00043 38.4 -0.5 35 215-249 6-53 (269)
13 KOG3780|consensus 24.6 8.4E+02 0.018 26.9 11.4 42 186-228 248-289 (427)
14 PF07938 Fungal_lectin: Fungal 24.6 1.4E+02 0.0031 33.2 5.7 42 13-54 42-83 (311)
15 PF14713 DUF4464: Domain of un 23.2 66 0.0014 34.7 2.8 41 203-254 192-232 (233)
No 1
>PTZ00116 signal peptidase; Provisional
Probab=100.00 E-value=1.4e-35 Score=292.26 Aligned_cols=124 Identities=31% Similarity=0.471 Sum_probs=108.1
Q ss_pred ccccceeeeeeccc-------ceeeeecccCCCCceeeEEEeeecCcc-cCcCccceEEEEEEccCCCcccccccceeEE
Q psy15615 156 PVRQNLLLCYKSNL-------IPITTYIQYNSSPVRQNLLLKNVPDYS-ASREENDLGFITFDLQANLTKIFNWNVKQLF 227 (904)
Q Consensus 156 ~~~~~~~~c~~s~l-------~AlST~f~~~s~PV~~~V~VknV~~f~-ssr~~~D~A~ItFDLdADLSpLFNWNTKQLF 227 (904)
-.|-|.+|||...+ ..+|++|++...++.++|+|+||++|. .+.+++|+|+|+|||+|||+++|||||||||
T Consensus 5 ~~R~Nal~~f~~~vLa~l~~~~~~s~~f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlF 84 (185)
T PTZ00116 5 LNRLNVLSYSMALCFLILCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLF 84 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEE
Confidence 35667777654322 234677765666676789999999996 5667899999999999999999999999999
Q ss_pred EEEEEEEeCCCCCcceEEEEccccccCCccccccccccceeecCCCCCCCCc
Q psy15615 228 LYLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLKI 279 (904)
Q Consensus 228 VYLtAEYeT~kn~lNQVVIWDKII~rkEdAkL~LkniksKY~fsDDprcLk~ 279 (904)
|||+|||+++++.+|||||||+||++||+|+|+++++++||.|||+|++|+.
T Consensus 85 vyv~a~Y~t~~~~~n~v~iWD~Ii~~k~~A~l~~~~~~~KY~l~D~~~~Lrg 136 (185)
T PTZ00116 85 LYVLVTYETPEKVKNEVIIQDYIITNKKQAKKTYKNFITKYSLKDYNNGLRN 136 (185)
T ss_pred EEEEEEEcCCCCccccEEEEeeeecCcccceEeecccccceeEEeCCCCccC
Confidence 9999999999999999999999999999999999999999999999999975
No 2
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=100.00 E-value=8.7e-35 Score=283.68 Aligned_cols=115 Identities=48% Similarity=0.847 Sum_probs=102.9
Q ss_pred eecccceeeeecccCCCCcee---eEEEeeecCcccCcCccceEEEEEEccCCCcccccccceeEEEEEEEEEeCCCCCc
Q psy15615 165 YKSNLIPITTYIQYNSSPVRQ---NLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFLYLTAEYITPSNVL 241 (904)
Q Consensus 165 ~~s~l~AlST~f~~~s~PV~~---~V~VknV~~f~ssr~~~D~A~ItFDLdADLSpLFNWNTKQLFVYLtAEYeT~kn~l 241 (904)
+++.+++|+++|+....++++ +++|++++.|+..++++|+|.|+|||+|||++|||||||||||||+|||+|+++..
T Consensus 21 ~l~~~~~~s~~~~~~~~~~~i~v~~~~v~~~~~~~~~~~~~D~a~i~fdl~aDls~lfnWNtKq~Fvyv~A~Y~t~~~~~ 100 (175)
T PF04573_consen 21 FLAALIFLSSYFHPPSPSVSISVSNVQVRKSRDYGYSGKKKDYAKITFDLDADLSPLFNWNTKQLFVYVTAEYETPKNPV 100 (175)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEEEEEecccccCCCCCceEEEEEEEeccCcccceeeeeeEEEEEEEEEECCCCCCc
Confidence 355566888888766666543 45567889998777889999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccCCccccccccccceeecCCCCCCCCc
Q psy15615 242 NQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLKI 279 (904)
Q Consensus 242 NQVVIWDKII~rkEdAkL~LkniksKY~fsDDprcLk~ 279 (904)
||||||||||++||+|+++++++++||.|+|++++|+.
T Consensus 101 NevviWD~Ii~~~~~a~~~~~~~~~KY~~~d~~~~l~~ 138 (175)
T PF04573_consen 101 NEVVIWDKIIRRKEDAVLNLKNVKSKYPFWDDGNGLRG 138 (175)
T ss_pred ceEEEehHhhcccchhhhhhhccccceeeECCCCcccC
Confidence 99999999999999999999999999999999999976
No 3
>KOG3372|consensus
Probab=100.00 E-value=7.5e-35 Score=283.94 Aligned_cols=107 Identities=53% Similarity=0.901 Sum_probs=99.5
Q ss_pred eeeecccC----CCCceeeEEEeeecCcccCcCccceEEEEEEccCCCcccccccceeEEEEEEEEEeCCCCCcceEEEE
Q psy15615 172 ITTYIQYN----SSPVRQNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFLYLTAEYITPSNVLNQVVLW 247 (904)
Q Consensus 172 lST~f~~~----s~PV~~~V~VknV~~f~ssr~~~D~A~ItFDLdADLSpLFNWNTKQLFVYLtAEYeT~kn~lNQVVIW 247 (904)
++++|+++ ..++ +.|+|+||++|++++++.|+++|+|||+|||++|||||||||||||+|||+|++|.+||||||
T Consensus 28 ~s~vf~~~~~~~~~~~-~~i~irn~~~y~~~r~~~d~~~v~Fdl~aDLs~lF~WNtKQvFvYl~AeY~t~~n~~nQVvlW 106 (176)
T KOG3372|consen 28 LSTVFLNREVDTQNPV-SRIKIRNVRDYGAQREKADEAFVTFDLSADLSSLFNWNTKQVFVYLVAEYSTKKNELNQVVLW 106 (176)
T ss_pred HHHHHhccccCCCCcc-eeEEEeehhhhccccccCceeEEEeecccChHhhcCcccceEEEEEEEEecCccccccceEEh
Confidence 45667655 3344 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccccccccceeecCCCCCCCCc
Q psy15615 248 DRIILRGENADLKFKNMNTKYYFWDDGKGLKI 279 (904)
Q Consensus 248 DKII~rkEdAkL~LkniksKY~fsDDprcLk~ 279 (904)
||||.++|++++.++++++||.|||||.+|..
T Consensus 107 DkII~~~d~~~l~~~~~~sky~f~D~g~nl~~ 138 (176)
T KOG3372|consen 107 DKIILRKDNAVLDGKDMSSKYYFFDDGNNLFG 138 (176)
T ss_pred hhhhcCcchhhhhhhccccceeEEecCCCccC
Confidence 99999999999999999999999999999975
No 4
>KOG0994|consensus
Probab=65.11 E-value=5.8 Score=50.25 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=44.4
Q ss_pred cccceeeeeccccceeeEEeeecCcccccceeeeeecccceeeeecc-cCCCCcee----eEEEeee----------cCc
Q psy15615 131 VRQNLLLCYKSNLIPITTYIQYNSSPVRQNLLLCYKSNLIPITTYIQ-YNSSPVRQ----NLLLKNV----------PDY 195 (904)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~s~l~AlST~f~-~~s~PV~~----~V~VknV----------~~f 195 (904)
.--|||+--++.|---+|--+- .--.|||||.|.--.--|+ +.+.|... +.+|.|| -+|
T Consensus 39 ~tGnLliGR~~~L~AsSTCGl~------~pe~yCi~Shlqdq~KCf~Cdsr~p~~~~~~pshrienVvss~~p~r~~~WW 112 (1758)
T KOG0994|consen 39 ATGNLLIGRARKLTASSTCGLN------KPERYCIVSHLQDQKKCFKCDSRYPHKAHLNPSHRIENVVSSFAPPRNITWW 112 (1758)
T ss_pred CccceeecchhheeecccccCC------CCcceEEeeccccccccccccCCCccccCCChhhhhhhhhhccCCCcccchh
Confidence 3457777776666543332211 1136899998887544443 23333221 2344444 244
Q ss_pred ccCcCccceEEEEEEccCCC
Q psy15615 196 SASREENDLGFITFDLQANL 215 (904)
Q Consensus 196 ~ssr~~~D~A~ItFDLdADL 215 (904)
.+. +..+.+.|.|||+|.|
T Consensus 113 QSe-ngv~~vtIQLDLEAEF 131 (1758)
T KOG0994|consen 113 QSE-NGVENVTIQLDLEAEF 131 (1758)
T ss_pred hcc-cCCCcceEEeehhhhe
Confidence 444 5678999999999864
No 5
>KOG2695|consensus
Probab=42.24 E-value=22 Score=40.58 Aligned_cols=137 Identities=22% Similarity=0.213 Sum_probs=81.0
Q ss_pred cceeeeecc--------ccceeeEEeeecCcccccceeeeeecccceeeeecc------cCCCCceeeEEEeeecCccc-
Q psy15615 133 QNLLLCYKS--------NLIPITTYIQYNSSPVRQNLLLCYKSNLIPITTYIQ------YNSSPVRQNLLLKNVPDYSA- 197 (904)
Q Consensus 133 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~c~~s~l~AlST~f~------~~s~PV~~~V~VknV~~f~s- 197 (904)
-|+++|+-+ -+.+|.+|+|- -+-++|+.+|-+-..-|-+-++- +-+.=....|.|.||+.=..
T Consensus 170 ~~~~~cfv~ls~~~s~e~~~~~s~~~~s--~pe~n~~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q 247 (425)
T KOG2695|consen 170 CNAMQCFVSLSPSLSNEGQFHISTYNQS--LPESNNYMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ 247 (425)
T ss_pred hhhHhheeecCCCcccceEeehhhhhhc--cccCCCCceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc
Confidence 456666643 36778888764 45588888887655443222211 11122223677788743211
Q ss_pred -CcCccceEEEEEEccCCCccccc-ccceeEEEEEEEEEeCCCCCcceEEEEccccccC-----Cccccccccccceeec
Q psy15615 198 -SREENDLGFITFDLQANLTKIFN-WNVKQLFLYLTAEYITPSNVLNQVVLWDRIILRG-----ENADLKFKNMNTKYYF 270 (904)
Q Consensus 198 -sr~~~D~A~ItFDLdADLSpLFN-WNTKQLFVYLtAEYeT~kn~lNQVVIWDKII~rk-----EdAkL~LkniksKY~f 270 (904)
=..+.|...+.|...+.| +|| --.+.||+|-.-+=.-.+....+++..|.-|.+- ++.+|...+|.+|-.|
T Consensus 248 sf~sksDVfAlQf~~s~nL--v~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 248 SFQSKSDVFALQFAGSDNL--VFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKL 325 (425)
T ss_pred ccccchhHHHHHhcccCCe--eEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeE
Confidence 112457777777776665 454 5578899887665533333456677777665532 3456777788888888
Q ss_pred CCC
Q psy15615 271 WDD 273 (904)
Q Consensus 271 sDD 273 (904)
||-
T Consensus 326 yD~ 328 (425)
T KOG2695|consen 326 YDL 328 (425)
T ss_pred eee
Confidence 884
No 6
>PRK13737 conjugal transfer pilus assembly protein TraU; Provisional
Probab=38.44 E-value=21 Score=40.16 Aligned_cols=93 Identities=25% Similarity=0.495 Sum_probs=66.9
Q ss_pred cccceeEEeee-------eecceeccccCCCCCC---------CC----ccccccccchhhhhhhHHHHHHh-----hhc
Q psy15615 34 QASEIHVHYFH-------QINFERTCALHPKGQF---------PT----KANFLLKPTSELQSHRVAQAVIA-----LKA 88 (904)
Q Consensus 34 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 88 (904)
+.+-.|||||+ +|-..-.|.-+ |.| |+ ...|+|-|.+-|-.+-|||+.-| --|
T Consensus 128 ~~sFyhvH~Y~yPl~~~L~i~~d~~C~~~--~~fDIaYmSEvDP~WnDd~Ls~ilnPEa~lFaNpiAq~ACaaDavaata 205 (330)
T PRK13737 128 NGAFYHVHWYKYPLTYWLNIITSLGCLEG--GDLDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAF 205 (330)
T ss_pred ccceeEeeehhhHHHHHHHHhcccccccC--CCcceEeeeccCCCccchhhhhhcCHHHHhhcCHHHHHHHHHHHHHHhc
Confidence 56778999986 44455567644 444 22 34689999999988888886532 223
Q ss_pred CCCCCcceEEecCCcccccceeeeeccccceeeEEeeecCcccccceeeeec
Q psy15615 89 RDRPVAPLIWINNSSPVRQNLLLCYKSNLIPITTYIQYNSSPVRQNLLLCYK 140 (904)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (904)
..|+.+|.|-..+ ..++-|+|..+.++.++|+-+.||--+
T Consensus 206 -g~pid~LFWCaGs-----------~Gs~YPltG~~~~~~~~vqas~Ll~~R 245 (330)
T PRK13737 206 -NMPLDVLFWCAGS-----------QGSMYPFNGWVSNESSPLQSSLLVSER 245 (330)
T ss_pred -CCCcchheeecCC-----------CCCcCCCCccccCCCcHHHHHHHHHHH
Confidence 5799999997665 256889999999999999888776543
No 7
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=35.51 E-value=1.9e+02 Score=26.58 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=19.4
Q ss_pred cceEEEEccccccCCc----cccccccccceeecCCC
Q psy15615 241 LNQVVLWDRIILRGEN----ADLKFKNMNTKYYFWDD 273 (904)
Q Consensus 241 lNQVVIWDKII~rkEd----AkL~LkniksKY~fsDD 273 (904)
.=++.|||+=...+++ +.|.|..+..+|.-.|-
T Consensus 68 ~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~~~~~ 104 (108)
T cd04039 68 DIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104 (108)
T ss_pred EEEEEEEECCCCCCCcceEEEEEEHHHHHhhCCCCCC
Confidence 3466789874333332 45777777777765443
No 8
>COG4114 FhuF Uncharacterized Fe-S protein [General function prediction only]
Probab=35.23 E-value=22 Score=38.47 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=43.6
Q ss_pred eeeecceeccccCCCCCCCCccccccccchhhhhhhHHHHHHhhhcCCCCCcceEEecCCc
Q psy15615 43 FHQINFERTCALHPKGQFPTKANFLLKPTSELQSHRVAQAVIALKARDRPVAPLIWINNSS 103 (904)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (904)
||.-..-++--+|-++|.+....-++.--.-|-+|.++..|-+|+|-..--.-|||-|-.+
T Consensus 117 fhetgr~~~f~~~~~~~~~~~~~~~~er~~tL~~~hL~pv~~~Lea~g~In~rLlWnNtgy 177 (251)
T COG4114 117 FHETGRPACFYVDVCEQKNADPRSPQERMETLISQHLVPVVQALEATGGINGRLLWNNTGY 177 (251)
T ss_pred eccCCCcceEEeeecccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhHH
Confidence 6777777777788888876322222222345678889999999999998889999977543
No 9
>KOG2111|consensus
Probab=32.49 E-value=39 Score=38.20 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=39.1
Q ss_pred CcccccccceeEEEEEEEEEeCCCCCcceEEEEccccccCC-----------------ccccccccccceeecCCCCCCC
Q psy15615 215 LTKIFNWNVKQLFLYLTAEYITPSNVLNQVVLWDRIILRGE-----------------NADLKFKNMNTKYYFWDDGKGL 277 (904)
Q Consensus 215 LSpLFNWNTKQLFVYLtAEYeT~kn~lNQVVIWDKII~rkE-----------------dAkL~LkniksKY~fsDDprcL 277 (904)
..+||.=| |+-|+..+..++...|.|+|||..-.+-- .=++.++|..--|.|.||.+=+
T Consensus 52 veMLfR~N----~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 52 VEMLFRSN----YLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLL 127 (346)
T ss_pred hhHhhhhc----eEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhhe
Confidence 56777666 45666677777889999999996533211 1112345544468888888766
Q ss_pred C
Q psy15615 278 K 278 (904)
Q Consensus 278 k 278 (904)
.
T Consensus 128 ~ 128 (346)
T KOG2111|consen 128 H 128 (346)
T ss_pred e
Confidence 4
No 10
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=30.41 E-value=54 Score=32.79 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=27.7
Q ss_pred eEEEeeecCcccCc--CccceEEEEEEccCCCccccccccee
Q psy15615 186 NLLLKNVPDYSASR--EENDLGFITFDLQANLTKIFNWNVKQ 225 (904)
Q Consensus 186 ~V~VknV~~f~ssr--~~~D~A~ItFDLdADLSpLFNWNTKQ 225 (904)
.++|.+|++|++.+ +...++..++.|... .|.|.+|-
T Consensus 5 ~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g---~~~w~V~r 43 (135)
T cd07296 5 KARVLEVERFTSTSDVKKPSLNVYTIELTHG---EFTWQVKR 43 (135)
T ss_pred EEEEEEEEEeeccccccccceEEEEEEEEeC---CEEEEEEe
Confidence 68899999999775 555666666666644 78888764
No 11
>PF05317 Thermopsin: Thermopsin; InterPro: IPR007981 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A5 (thermopsin family, clan A-). Currently the protein fold and active site residues are not known for any members of this family. The type example is thermopsin from Sulfolobus acidocaldarius. Thermopsin is a thermostable acid protease which is capable of hydrolysing the following bonds: Leu-Val, Leu-Tyr, Phe-Phe, Phe-Tyr, and Tyr-Thr. The specificity of thermopsin is therefore similar to that of pepsin, that is, it prefers large hydrophobic residues at both sides of the scissile bond [].
Probab=28.97 E-value=2.2e+02 Score=31.08 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=48.3
Q ss_pred CceeeEEEeeecCcccCcCccceEEEEEEccCCCc-ccccccceeEEEEEEEEEeCCCCCcceEEEEcccccc
Q psy15615 182 PVRQNLLLKNVPDYSASREENDLGFITFDLQANLT-KIFNWNVKQLFLYLTAEYITPSNVLNQVVLWDRIILR 253 (904)
Q Consensus 182 PV~~~V~VknV~~f~ssr~~~D~A~ItFDLdADLS-pLFNWNTKQLFVYLtAEYeT~kn~lNQVVIWDKII~r 253 (904)
.|...+.|.++..|.....+.+. ++|.|+|=|. .+++=++-+.||.-+|.|.+. .|++-+||-|-.-
T Consensus 39 ~vlG~~nI~~l~~~~~t~~~~~~--aSlQLN~vl~v~~~~g~~~~yW~QnV~~f~t~---~~~~~~~dNIWN~ 106 (265)
T PF05317_consen 39 SVLGYFNISSLSAYNSTPPSPYS--ASLQLNAVLQVNTTNGGTYYYWLQNVALFNTN---NNQFYFIDNIWNF 106 (265)
T ss_pred EEEEEEEEeEeEeeecCCCCCCc--EEEEeeeEEEEEecCCcceEEEeeeEEEEEcC---CCEEEEEEEEEEC
Confidence 34467788888877665444344 4555555565 667777888999999999885 4778999998873
No 12
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=25.55 E-value=20 Score=38.39 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=21.9
Q ss_pred CcccccccceeEEEEEEEEEeCCC-------------CCcceEEEEcc
Q psy15615 215 LTKIFNWNVKQLFLYLTAEYITPS-------------NVLNQVVLWDR 249 (904)
Q Consensus 215 LSpLFNWNTKQLFVYLtAEYeT~k-------------n~lNQVVIWDK 249 (904)
+..+++++.+.-||||+.-|.... +..|+||+||-
T Consensus 6 v~~lid~~~~~P~lhvS~~~~a~~~~~~~v~Pla~hp~nkN~vI~~DL 53 (269)
T PF08411_consen 6 VAKLIDLNSMKPLLHVSGMFGAERGCTSLVLPLAQHPTNKNAVICFDL 53 (269)
T ss_dssp HHHT--TTTT--EEEE-GGG-GGGTTEEEEEEEEE-SS-TTEEEEEET
T ss_pred HHHHhCccCCCcEEEecccchhhcCCceEEEeeeeCCCCCCeEEEEEC
Confidence 456778888888888888886654 25799999995
No 13
>KOG3780|consensus
Probab=24.60 E-value=8.4e+02 Score=26.85 Aligned_cols=42 Identities=7% Similarity=-0.058 Sum_probs=25.1
Q ss_pred eEEEeeecCcccCcCccceEEEEEEccCCCcccccccceeEEE
Q psy15615 186 NLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228 (904)
Q Consensus 186 ~V~VknV~~f~ssr~~~D~A~ItFDLdADLSpLFNWNTKQLFV 228 (904)
++.+++........+..+.....|.|-+.+ +.|.|.++-|.|
T Consensus 248 ~~~~~~~~~~~v~~~~~~~~~~~~~iP~~~-Ps~~~~~~~i~v 289 (427)
T KOG3780|consen 248 KTLIKSRGSLEVAPRSEDKFEKELRIPPVP-PSILPDTPIIRV 289 (427)
T ss_pred eEEeeeccccccCCCCccccceEEEcCCCC-CccCCCCceEEE
Confidence 344444444444444557778888888888 466665544433
No 14
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level. These fungal lectins, such as Aleuria aurantialectin (AAL, P18891 from SWISSPROT), specifically recognise fucosylated glycans. AAL is a dimeric protein, with each monomer being organised into a six-bladed beta-propeller fold and a small antiparallel two-stranded beta-sheet. The beta-propeller fold is important in fucose recognition; five binding pockets are found between the propeller blades. The small beta-sheet, on the other hand, is involved in the dimerisation process []. ; PDB: 1IUC_A 1OFZ_A 1IUB_A 2BS5_A 3ZWE_B 3ZW1_B 3ZZV_A 3ZW2_A 3ZW0_A 2BS6_C ....
Probab=24.56 E-value=1.4e+02 Score=33.19 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred hHHHHHHhhhcCCCCcccccccccceeEEeeeeecceecccc
Q psy15615 13 SVAQAVIALKARDRPVAPLVNQASEIHVHYFHQINFERTCAL 54 (904)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (904)
+..+.||+--+..-|+|-+.+...+|||-|.+.-|.-+.-..
T Consensus 42 ~~~~~v~~~AK~~TPLAA~s~~~~~irvyyl~~~n~l~E~~~ 83 (311)
T PF07938_consen 42 GTSQNVIGKAKLGTPLAAVSKNLNQIRVYYLSNDNILHEICY 83 (311)
T ss_dssp -SGGGEEEE-STT---EEEETTEEEEEEEEE-TT-BEEEEEE
T ss_pred cccccchhhhhcCCCeEEEEcCCCcEEEEEECCCCeEEEEEE
Confidence 344555543346789999998999999999887666444333
No 15
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=23.24 E-value=66 Score=34.71 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=27.9
Q ss_pred ceEEEEEEccCCCcccccccceeEEEEEEEEEeCCCCCcceEEEEccccccC
Q psy15615 203 DLGFITFDLQANLTKIFNWNVKQLFLYLTAEYITPSNVLNQVVLWDRIILRG 254 (904)
Q Consensus 203 D~A~ItFDLdADLSpLFNWNTKQLFVYLtAEYeT~kn~lNQVVIWDKII~rk 254 (904)
|.-.|.+|-.++ .+.=|++-.++ -+- ...||||||+||++|
T Consensus 192 D~K~I~Vdp~~~---~~~~n~~R~~i-~s~-------~y~~vv~yDH~vRrk 232 (233)
T PF14713_consen 192 DRKIINVDPKAN---PPGDNSTRTMI-ESP-------EYGQVVLYDHVVRRK 232 (233)
T ss_pred CCCEEeeCCCCC---CCCCCCeeeEE-eCC-------CCCEEEEEeeeeeec
Confidence 555666665554 56667777765 223 347999999999986
Done!