Query psy15615
Match_columns 904
No_of_seqs 173 out of 254
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 17:13:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aen_A HLA class II histocompa 31.5 1.3E+02 0.0045 29.6 7.9 45 90-134 97-146 (207)
2 1n8y_C Protooncoprotein; tyros 30.0 19 0.00065 40.9 1.9 41 215-258 116-159 (608)
3 3pbp_B Nucleoporin NUP116/NSP1 28.9 22 0.00077 34.2 1.9 43 188-232 21-72 (148)
4 3zqx_A Cellulose 1,4-beta-cell 27.7 51 0.0018 31.6 4.1 45 230-275 3-49 (146)
5 1yy9_A Epidermal growth factor 27.5 31 0.0011 39.2 3.1 48 214-261 107-154 (624)
6 3nf5_A Nucleoporin NUP116; nuc 21.6 29 0.001 34.1 1.2 42 187-230 31-81 (164)
7 2l8a_A Endoglucanase; carbohyd 21.5 57 0.002 31.0 3.2 45 230-275 4-50 (149)
8 2wnx_A Glycoside hydrolase, fa 21.3 1.1E+02 0.0038 29.7 5.2 36 239-275 24-59 (170)
9 2ahx_A P180ERBB4, receptor tyr 21.1 49 0.0017 37.5 3.0 45 214-261 106-153 (617)
10 3fcs_A Integrin, alpha 2B; bet 20.5 4.3E+02 0.015 31.7 10.9 28 25-54 577-604 (959)
No 1
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system, SELF antigen, invariant chain, CLIP; 2.20A {Homo sapiens}
Probab=31.45 E-value=1.3e+02 Score=29.57 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=32.8
Q ss_pred CCCCcceEEecCCccc---ccceeeeeccccce--eeEEeeecCcccccc
Q psy15615 90 DRPVAPLIWINNSSPV---RQNLLLCYKSNLIP--ITTYIQYNSSPVRQN 134 (904)
Q Consensus 90 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 134 (904)
.|-+.|-++|-..+++ ..|.|.|.-+++.| |+....-|...|.+.
T Consensus 97 ~~~~~P~V~v~~~~~~~~~~~~tL~C~a~gFyP~~I~v~W~knG~~~~~~ 146 (207)
T 4aen_A 97 ITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTG 146 (207)
T ss_dssp CCCBCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred ccCCCCeEEEEcCCcccccCceeEEEEEeeecCeeEEEEEEECCEECccc
Confidence 5778999999776665 34889999999988 555555676666543
No 2
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=30.03 E-value=19 Score=40.87 Aligned_cols=41 Identities=12% Similarity=0.409 Sum_probs=26.1
Q ss_pred CcccccccceeEE---EEEEEEEeCCCCCcceEEEEccccccCCccc
Q psy15615 215 LTKIFNWNVKQLF---LYLTAEYITPSNVLNQVVLWDRIILRGENAD 258 (904)
Q Consensus 215 LSpLFNWNTKQLF---VYLtAEYeT~kn~lNQVVIWDKII~rkEdAk 258 (904)
|+.|-=+|.+.|. ||+.- +.+-=.-+-|-|+.|+....+..
T Consensus 116 l~~l~l~~L~~I~~G~V~i~~---N~~LC~~~ti~W~~i~~~~~~~~ 159 (608)
T 1n8y_C 116 LRELQLRSLTEILKGGVLIRG---NPQLCYQDMVLWKDVFRKNNQLA 159 (608)
T ss_dssp CCCCCCTTCCEECSCEEEEES---CTTCCSTTSSCHHHHBCGGGTTC
T ss_pred ceEeCCcccCccccceEEEec---CCcccccccccHHHhhCCcCcce
Confidence 8888878888764 55432 22211245678999999866543
No 3
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=28.94 E-value=22 Score=34.22 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=32.8
Q ss_pred EEeeecCcccCcCccceEEEEEEccCCCccc---------ccccceeEEEEEEE
Q psy15615 188 LLKNVPDYSASREENDLGFITFDLQANLTKI---------FNWNVKQLFLYLTA 232 (904)
Q Consensus 188 ~VknV~~f~ssr~~~D~A~ItFDLdADLSpL---------FNWNTKQLFVYLtA 232 (904)
++++|++|...++ +++.|.|.-.+||+.| ...+.|.|.||--.
T Consensus 21 ~l~~V~~F~VGR~--gyG~I~f~~pVDL~~l~Ld~i~g~iV~f~~~~v~VYpd~ 72 (148)
T 3pbp_B 21 QLRKVPHLVVGHK--SYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANL 72 (148)
T ss_dssp TTSSBCSCEEEET--TTEEEEESSCBCCTTSCTTHHHHTSEEEETTEEEESCSS
T ss_pred HhccCCCeEEEec--cEEEEEeCCceeccccChhhhcCCEEEEecCEEEEeCCc
Confidence 4778999987655 6999999988887763 45777888887643
No 4
>3zqx_A Cellulose 1,4-beta-cellobiosidase; hydrolase, cellulose binding protein; 1.04A {Clostridium thermocellum} PDB: 2ylk_A
Probab=27.66 E-value=51 Score=31.55 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=36.8
Q ss_pred EEEEEeCCCC--CcceEEEEccccccCCccccccccccceeecCCCCC
Q psy15615 230 LTAEYITPSN--VLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGK 275 (904)
Q Consensus 230 LtAEYeT~kn--~lNQVVIWDKII~rkEdAkL~LkniksKY~fsDDpr 275 (904)
|.++|.+.+. ..|+|-+|=+|+..+.. .+.|++++-.|+|-.|+.
T Consensus 3 l~vqy~~~~~~~~~n~i~~~~~I~N~g~~-~i~Ls~lkiRYyft~d~~ 49 (146)
T 3zqx_A 3 VKVQYLCENTQTSTQEIKGKFNIVNTGNR-DYSLKDIVLRYYFTKEHN 49 (146)
T ss_dssp EEEEEEESCCCSEESCEEEEEEEEECSSC-CEEGGGEEEEEECCCCCC
T ss_pred EEEEEEcCCCCCCCCEEeEEEEEEECCCc-eEEcCcEEEEEEEecCCC
Confidence 6788877543 46999999999998876 788899999999977763
No 5
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Probab=27.50 E-value=31 Score=39.20 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=26.1
Q ss_pred CCcccccccceeEEEEEEEEEeCCCCCcceEEEEccccccCCcccccc
Q psy15615 214 NLTKIFNWNVKQLFLYLTAEYITPSNVLNQVVLWDRIILRGENADLKF 261 (904)
Q Consensus 214 DLSpLFNWNTKQLFVYLtAEYeT~kn~lNQVVIWDKII~rkEdAkL~L 261 (904)
+|..|-=+|.+.|----+.-.++.+-=.-+-|-|+.|+.+.....+.+
T Consensus 107 ~l~~lgl~~L~~I~~G~V~i~~N~~LC~~~ti~W~~i~~~~~~~~~~~ 154 (624)
T 1yy9_A 107 GLKELPMRNLQEILHGAVRFSNNPALCNVESIQWRDIVSSDFLSNMSM 154 (624)
T ss_dssp BCCBCCCTTCCEECSCEEEEECCTTCCSGGGCCGGGTBCTTTGGGCEE
T ss_pred CccEeCcccccceeeceEEEecCCcccCcccccHHHHhcCCCcceEEe
Confidence 677776677777652211112222211124568999999765544433
No 6
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=21.58 E-value=29 Score=34.10 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=30.1
Q ss_pred EEEeeecCcccCcCccceEEEEEEccCCCccc---------ccccceeEEEEE
Q psy15615 187 LLLKNVPDYSASREENDLGFITFDLQANLTKI---------FNWNVKQLFLYL 230 (904)
Q Consensus 187 V~VknV~~f~ssr~~~D~A~ItFDLdADLSpL---------FNWNTKQLFVYL 230 (904)
.+++.|++|...++ .++.|.|.-.+||+.| ..++.|.|.||-
T Consensus 31 ~~l~~V~nFtVGR~--gyG~I~F~~pVDL~~ldLd~i~g~iV~f~~k~v~VYp 81 (164)
T 3nf5_A 31 YEIQKVENLVVGNK--QYGKIEFLDPVDLSDIPLGSICDDLVVFQPMSVLLYN 81 (164)
T ss_dssp HHHTSBCSCEEEET--TTEEEEESSCBCCTTCCGGGTBTTTEEEETTEEEEST
T ss_pred HHhCcCCCeEEeec--eEEEEEeCCceeccccChhHhcCCEEEEecCEEEEeC
Confidence 34778899987755 6899999887877764 344556666654
No 7
>2l8a_A Endoglucanase; carbohydrate-binding module, family 3, hydrolase; NMR {Bacillus subtilis}
Probab=21.51 E-value=57 Score=30.97 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=36.0
Q ss_pred EEEEEeCCC--CCcceEEEEccccccCCccccccccccceeecCCCCC
Q psy15615 230 LTAEYITPS--NVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGK 275 (904)
Q Consensus 230 LtAEYeT~k--n~lNQVVIWDKII~rkEdAkL~LkniksKY~fsDDpr 275 (904)
|.++|.+.. ...|+|-+|=+|+..+. ..+.|++++-.|+|-.|+.
T Consensus 4 ~~v~y~~~~~~~~~n~i~~~~~I~N~g~-~~i~Ls~l~iRYyft~d~~ 50 (149)
T 2l8a_A 4 ISVQYRAGDGSMNSNQIRPQLQIKNNGN-TTVDLKDVTARYWYKAKNK 50 (149)
T ss_dssp CEEEEESCSSCCCTTEECCEEEEECTTC-SCCCGGGEEEEEEECCSSC
T ss_pred EEEEEEeCCCCCCCCEEEEEEEEEeCCC-CCEEcCceEEEEEEcCCCC
Confidence 456776643 34699999999999877 6788999999999988876
No 8
>2wnx_A Glycoside hydrolase, family 9; cellulose degradation; 1.31A {Clostridium thermocellum} PDB: 2wo4_A 2wob_A
Probab=21.32 E-value=1.1e+02 Score=29.66 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCcceEEEEccccccCCccccccccccceeecCCCCC
Q psy15615 239 NVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGK 275 (904)
Q Consensus 239 n~lNQVVIWDKII~rkEdAkL~LkniksKY~fsDDpr 275 (904)
...|+|-+|=+|+..+.. .++|++++-.|+|-.|+.
T Consensus 24 ~~~n~i~~~~~I~N~g~~-~i~Ls~lkiRYyft~d~~ 59 (170)
T 2wnx_A 24 GTKNTIRATINIKNTGTT-PVNLSDIKVRYWFTSDGN 59 (170)
T ss_dssp SSCCEEEEEEEEEECSSS-CEEGGGEEEEEEECCTTC
T ss_pred CCCCEEEEEEEEEECCCC-ceecCcEEEEEEEcCCCC
Confidence 457999999999988775 668889999999988875
No 9
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=21.10 E-value=49 Score=37.46 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=24.7
Q ss_pred CCcccccccceeEE---EEEEEEEeCCCCCcceEEEEccccccCCcccccc
Q psy15615 214 NLTKIFNWNVKQLF---LYLTAEYITPSNVLNQVVLWDRIILRGENADLKF 261 (904)
Q Consensus 214 DLSpLFNWNTKQLF---VYLtAEYeT~kn~lNQVVIWDKII~rkEdAkL~L 261 (904)
+|+.|-=+|.+.|. |++.- +.+-=.-+-|-|+.|+.......+.+
T Consensus 106 ~l~~lgl~~L~~I~~G~V~i~~---N~~LC~~~ti~W~~i~~~~~~~~~~~ 153 (617)
T 2ahx_A 106 GLQELGLKNLTEILNGGVYVDQ---NKFLCYADTIHWQDIVRNPWPSNLTL 153 (617)
T ss_dssp BCCEEECTTCCEECSSEEEEEC---CTTCCSGGGSCGGGTBSCCCSGGGEE
T ss_pred CCcEeCCCccceEeeceEEEec---CCcccccccccHHHhhcCcccccEEe
Confidence 56666666767663 44332 22211123467999998765444433
No 10
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=20.54 E-value=4.3e+02 Score=31.74 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCCcccccccccceeEEeeeeecceecccc
Q psy15615 25 DRPVAPLVNQASEIHVHYFHQINFERTCAL 54 (904)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (904)
...+.|++|+..+-+++ .||+|++-|.-
T Consensus 577 ~~~l~PvL~~~~~~~~~--~~~~f~k~CG~ 604 (959)
T 3fcs_A 577 EAGMAPAVVLHGDTHVQ--EQTRIVLDCGE 604 (959)
T ss_dssp CTTCCCCCEEEECCEEE--EEECBCCSCTT
T ss_pred cCCCCccCccCCCceEE--EeeeeEcCCCC
Confidence 35577888887776554 37999999963
Done!