Query psy15615
Match_columns 904
No_of_seqs 173 out of 254
Neff 2.6
Searched_HMMs 13730
Date Fri Aug 16 17:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15615.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15615hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1rtf.1 b.47.1.2 (A:,B:) Two-c 34.8 56 0.0041 28.1 7.9 27 193-219 94-120 (260)
2 d2avue1 e.64.1.1 (E:5-160) Fla 34.5 3.4 0.00025 38.0 -0.4 72 12-87 9-80 (156)
3 d1n8yc2 c.10.2.5 (C:323-488) P 24.7 13 0.00093 33.8 1.7 51 202-256 95-148 (166)
4 g1fiw.1 b.47.1.2 (L:,A:) Beta- 24.7 75 0.0054 28.0 7.0 33 187-219 96-131 (274)
5 d1g43a_ b.2.2.2 (A:) Cellusoma 24.1 28 0.0021 31.4 3.9 45 230-275 6-52 (160)
6 d2dtge4 c.10.2.5 (E:4-156) Ins 19.3 15 0.0011 32.7 0.8 57 203-261 87-144 (153)
7 d1eaxa_ b.47.1.2 (A:) Matripta 18.9 1.8E+02 0.013 24.9 8.1 34 186-219 77-113 (241)
8 d1m6ba2 c.10.2.5 (A:311-479) R 18.3 28 0.002 31.3 2.5 56 203-261 97-155 (169)
9 d3b2ua1 c.10.2.5 (A:312-480) E 18.1 27 0.002 31.4 2.4 52 203-256 99-151 (169)
10 d1nbca_ b.2.2.2 (A:) Cellusoma 17.9 31 0.0022 31.1 2.7 45 230-275 2-48 (155)
No 1
>g1rtf.1 b.47.1.2 (A:,B:) Two-chain tissue plasminogen activator (TC)-T-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.85 E-value=56 Score=28.12 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=20.7
Q ss_pred cCcccCcCccceEEEEEEccCCCcccc
Q psy15615 193 PDYSASREENDLGFITFDLQANLTKIF 219 (904)
Q Consensus 193 ~~f~ssr~~~D~A~ItFDLdADLSpLF 219 (904)
++|......+|.|.|+++-.++++..|
T Consensus 94 p~y~~~~~~~diAll~L~~~~~~~~~~ 120 (260)
T g1rtf.1 94 KEFDDDTYDNDIALLQLKSDSSRCAQE 120 (260)
T ss_dssp TTCCTTTCTTCCEEEEECCSSSCCSCC
T ss_pred eecccccccccceeeeecCCccccccc
Confidence 677666667899999998877666554
No 2
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=34.51 E-value=3.4 Score=38.04 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=56.2
Q ss_pred hhHHHHHHhhhcCCCCcccccccccceeEEeeeeecceeccccCCCCCCCCccccccccchhhhhhhHHHHHHhhh
Q psy15615 12 VSVAQAVIALKARDRPVAPLVNQASEIHVHYFHQINFERTCALHPKGQFPTKANFLLKPTSELQSHRVAQAVIALK 87 (904)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (904)
+-.|..+|+|.||-.-++-+++-..|..++.|+.|+ =.--|||+.|..+.+++...+.+++--+.+.-..|.
T Consensus 9 i~lA~eLi~lGaR~qvle~et~Ls~~~l~rLykE~~----g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~ 80 (156)
T d2avue1 9 IQLAMELITLGARLQMLESETQLSRGRLIKLYKELR----GSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLL 80 (156)
T ss_dssp HHHHHHHHHTTCCSHHHHHHSSSCHHHHHHHHHHHS----SSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHHHHh----CCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHH
Confidence 456888999999999888888888888887776553 234699999999999998888887766666555543
No 3
>d1n8yc2 c.10.2.5 (C:323-488) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.72 E-value=13 Score=33.76 Aligned_cols=51 Identities=10% Similarity=0.208 Sum_probs=32.2
Q ss_pred cceEEEEEEccCCCcccccccceeE---EEEEEEEEeCCCCCcceEEEEccccccCCc
Q psy15615 202 NDLGFITFDLQANLTKIFNWNVKQL---FLYLTAEYITPSNVLNQVVLWDRIILRGEN 256 (904)
Q Consensus 202 ~D~A~ItFDLdADLSpLFNWNTKQL---FVYLtAEYeT~kn~lNQVVIWDKII~rkEd 256 (904)
.+++.+-++ +-+|..|+-|+.+.| .||+.. +++==.-+.|-|++|+...++
T Consensus 95 ~~~~~l~~~-n~~L~~L~l~sL~~I~~G~v~i~~---N~~LCy~~ti~W~~i~~~~~~ 148 (166)
T d1n8yc2 95 DGAYSLTLQ-GLGIHSLGLRSLRELGSGLALIHR---NAHLCFVHTVPWDQLFRNPHQ 148 (166)
T ss_dssp TTTEEEEEE-SCCCSCCCCTTCCEECSSEEEEEC---CTTCCCSTTSCHHHHCCSTTC
T ss_pred CCceEEEEE-CCCcCccCCcccCEEccCcEEEeC---CccccCCCccCHHHHhcCcCC
Confidence 355666665 779999999999887 455432 222111234459999976554
No 4
>g1fiw.1 b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}
Probab=24.71 E-value=75 Score=28.05 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=25.5
Q ss_pred EEEeee---cCcccCcCccceEEEEEEccCCCcccc
Q psy15615 187 LLLKNV---PDYSASREENDLGFITFDLQANLTKIF 219 (904)
Q Consensus 187 V~VknV---~~f~ssr~~~D~A~ItFDLdADLSpLF 219 (904)
+.|++| ++|......+|.|.|+++-.++|+..+
T Consensus 96 ~~V~~i~~Hp~y~~~~~~~dIali~l~~~i~~s~~v 131 (274)
T g1fiw.1 96 RYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFI 131 (274)
T ss_dssp EEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTB
T ss_pred EEEEEEEEecccccccccccceeeecccCcccccee
Confidence 445554 778777778999999999988887643
No 5
>d1g43a_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium cellulolyticum [TaxId: 1521]}
Probab=24.05 E-value=28 Score=31.45 Aligned_cols=45 Identities=11% Similarity=0.320 Sum_probs=35.5
Q ss_pred EEEEEeCCCC--CcceEEEEccccccCCccccccccccceeecCCCCC
Q psy15615 230 LTAEYITPSN--VLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGK 275 (904)
Q Consensus 230 LtAEYeT~kn--~lNQVVIWDKII~rkEdAkL~LkniksKY~fsDDpr 275 (904)
|.++|.+..+ ..|+|-++=+|+.++.. .++|.+++-.|+|--|+.
T Consensus 6 l~v~y~n~~~~~~~n~I~~~~~i~N~g~~-p~~lsdl~~RYyft~d~~ 52 (160)
T d1g43a_ 6 VSVQFNNGSSPASSNSIYARFKVTNTSGS-PINLADLKLRYYYTQDAD 52 (160)
T ss_dssp EEEEEECTTCCSEESCEEEEEEEEECSSS-CEEGGGEEEEEEECCSSC
T ss_pred EEEEEecCCCCCCCCeEeEEEEEEeCCCC-CcccCceEEEEEEccccc
Confidence 5677776554 56999999999998775 467889999999987763
No 6
>d2dtge4 c.10.2.5 (E:4-156) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.32 E-value=15 Score=32.72 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.4
Q ss_pred ceEEEEEEccCCCcccccccceeEE-EEEEEEEeCCCCCcceEEEEccccccCCcccccc
Q psy15615 203 DLGFITFDLQANLTKIFNWNVKQLF-LYLTAEYITPSNVLNQVVLWDRIILRGENADLKF 261 (904)
Q Consensus 203 D~A~ItFDLdADLSpLFNWNTKQLF-VYLtAEYeT~kn~lNQVVIWDKII~rkEdAkL~L 261 (904)
++|.+ +--+.+|..|+-|+.+.|= =.|...+ +++==..+-|=|++|+.+.++..+.+
T Consensus 87 ~~al~-i~~n~~L~~L~l~sL~~I~~G~v~i~~-Np~LCy~~ti~W~~i~~~~~~~~~~~ 144 (153)
T d2dtge4 87 NYALV-IFEMVHLKELGLYNLMNITRGSVRIEK-NNELCYLATIDWSRILDSVEDNHIVL 144 (153)
T ss_dssp TEEEE-EESCTTCCBCCCCSCCBCCSCEEEEEC-CSCCCBTSSSCHHHHSSCCTTCEEES
T ss_pred cEEEE-EEeCCCCccccCcccCeEecCcEEEcC-CccccCcCCcCHHHHhcCCCCceEEe
Confidence 45544 4456789999999988762 1122222 22211134567999998777654433
No 7
>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.92 E-value=1.8e+02 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=24.6
Q ss_pred eEEEeee---cCcccCcCccceEEEEEEccCCCcccc
Q psy15615 186 NLLLKNV---PDYSASREENDLGFITFDLQANLTKIF 219 (904)
Q Consensus 186 ~V~VknV---~~f~ssr~~~D~A~ItFDLdADLSpLF 219 (904)
.+.|++| +.|......+|.|.|+++..++++...
T Consensus 77 ~~~v~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~ 113 (241)
T d1eaxa_ 77 ERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMV 113 (241)
T ss_dssp EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTB
T ss_pred EEEEEEEEECCcccccccCCcccccccCCceecCccc
Confidence 3455555 666666677899999999888876654
No 8
>d1m6ba2 c.10.2.5 (A:311-479) Receptor protein-tyrosine kinase Erbb-3 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.34 E-value=28 Score=31.33 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=34.8
Q ss_pred ceEEEEEEccCCCcccccccceeE---EEEEEEEEeCCCCCcceEEEEccccccCCcccccc
Q psy15615 203 DLGFITFDLQANLTKIFNWNVKQL---FLYLTAEYITPSNVLNQVVLWDRIILRGENADLKF 261 (904)
Q Consensus 203 D~A~ItFDLdADLSpLFNWNTKQL---FVYLtAEYeT~kn~lNQVVIWDKII~rkEdAkL~L 261 (904)
+...|.+--+.+|..|+-|+.+.| .||+.. +++==.-+.|-|++|+.+..+..+.+
T Consensus 97 ~~yal~I~~N~~L~~L~l~sL~~I~~G~v~i~~---N~~LCy~~ti~W~~i~~~~~~~~~~~ 155 (169)
T d1m6ba2 97 RGFSLLIMKNLNVTSLGFRSLKEISAGRIYISA---NRQLCYHHSLNWTKVLRGPTEERLDI 155 (169)
T ss_dssp SSEEEEEECCTTCCBCCCTTCCEECSSEEEEEC---CTTCCSCSSCCHHHHBCSCCTTCEEE
T ss_pred CCEEEEEEeCCCCCccCCccccEeccCcEEEec---CccccCCCccCHHHHhcCcccceEEe
Confidence 334455556788999999999887 344432 22211134667999998765544433
No 9
>d3b2ua1 c.10.2.5 (A:312-480) EGF receptor extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.10 E-value=27 Score=31.43 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=30.2
Q ss_pred ceEEEEEEccCCCcccccccceeEE-EEEEEEEeCCCCCcceEEEEccccccCCc
Q psy15615 203 DLGFITFDLQANLTKIFNWNVKQLF-LYLTAEYITPSNVLNQVVLWDRIILRGEN 256 (904)
Q Consensus 203 D~A~ItFDLdADLSpLFNWNTKQLF-VYLtAEYeT~kn~lNQVVIWDKII~rkEd 256 (904)
+.+.+-++ +.+|..|+-||.+.|= =.|..++ +++==..+.|-|++|+..+..
T Consensus 99 ~~~~li~~-n~~L~~Lgl~sL~~I~~G~V~i~~-N~~LCy~~ti~W~~I~~~~~~ 151 (169)
T d3b2ua1 99 GQFSLAVV-SLNITSLGLRSLKEISDGDVIISG-NKNLCYANTINWKKLFGTSGQ 151 (169)
T ss_dssp TTEEEEEE-SCCCSCCCCTTCCEECSSEEEEEC-CTTCCSTTTSCGGGTBCSTTC
T ss_pred CceeEEEe-cCCccccCCcccceEccCeEEEec-CccccCCCcCCHHHHhCCCCC
Confidence 44555444 5799999999988752 1122222 111111345669999987654
No 10
>d1nbca_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium thermocellum [TaxId: 1515]}
Probab=17.90 E-value=31 Score=31.06 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=36.3
Q ss_pred EEEEEeCCCC--CcceEEEEccccccCCccccccccccceeecCCCCC
Q psy15615 230 LTAEYITPSN--VLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGK 275 (904)
Q Consensus 230 LtAEYeT~kn--~lNQVVIWDKII~rkEdAkL~LkniksKY~fsDDpr 275 (904)
|.++|.+.++ ..|+|-+|=+|+..+.. .++|.+++-.|+|--|+.
T Consensus 2 l~v~y~n~~~~~~~n~I~~~~~i~N~g~~-~i~Lsdlk~RYyft~dg~ 48 (155)
T d1nbca_ 2 LKVEFYNSNPSDTTNSINPQFKVTNTGSS-AIDLSKLTLRYYYTVDGQ 48 (155)
T ss_dssp EEEEEEESCCCSEESCBCEEEEEEECSSS-CEEGGGEEEEEEECCSSC
T ss_pred eEEEEECCCCCCCCCeEeEEEEEEECCCC-ccccCcEEEEEEEecCCC
Confidence 6778877664 45999999999998775 578889999999988864
Done!