RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15615
(904 letters)
>gnl|CDD|191032 pfam04573, SPC22, Signal peptidase subunit. Translocation of
polypeptide chains across the endoplasmic reticulum
membrane is triggered by signal sequences. During
translocation of the nascent chain through the membrane,
the signal sequence of most secretory and membrane
proteins is cleaved off. Cleavage occurs by the signal
peptidase complex (SPC) which consists of four subunits
in yeast and five in mammals. This family is common to
yeast and mammals.
Length = 175
Score = 187 bits (476), Expect = 8e-55
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 172 ITTYIQYNSSPVR---QNLLLKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFL 228
++T S +++V D+ R++NDLGF+TFDL A+L+ +FNWN KQLF+
Sbjct: 28 LSTVFNDYSVSASISVVKAKVRSVRDFGNRRKKNDLGFLTFDLSADLSPLFNWNTKQLFV 87
Query: 229 YLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
YLTAEY TP N LNQVVLWD+IILR ENA L K+M +KYYFWDDG GLK
Sbjct: 88 YLTAEYETPENALNQVVLWDKIILRKENAKLDLKDMKSKYYFWDDGNGLK 137
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 129 bits (326), Expect = 3e-30
Identities = 121/485 (24%), Positives = 142/485 (29%), Gaps = 56/485 (11%)
Query: 295 GSPDPRCPRPPPSPTPTTTP-APICYP---------------GSNDPRCPTRPPPPPPPP 338
G PDP P P P P P+ P S+D P P PP PP
Sbjct: 2502 GPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPP 2561
Query: 339 TTPRPTTQPPPICYPGSPDP------RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPT 392
P + PPP P +P R P PP P P P P
Sbjct: 2562 AAPDRSV-PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD 2620
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
P PPPP+ +P P P P P PR P+P + P G S
Sbjct: 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR--AAQASS 2678
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
PP PR P V PPP P PAP + P P P
Sbjct: 2679 PPQRPRRRAARPTV----GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734
Query: 513 PPTTPAPPV-----CYPGSNDPRCPRPTPTTPP---PPQCYLGSPDPRCPRPLPSSPSPP 564
P PAPP PG PT PP PP P R RP +S S
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794
Query: 565 VCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPP 624
SP P + P + P P PPPT+ + P P P
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS---------AQPTAPPPPPGP 2845
Query: 625 QPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVC 684
P PL +P R P P R P S+ L P
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP--- 2902
Query: 685 TCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQP 744
P P P P+ + P Q P P P P+ +P
Sbjct: 2903 ----DQPERPPQP---QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
Query: 745 ETYLP 749
+P
Sbjct: 2956 SGAVP 2960
Score = 129 bits (325), Expect = 3e-30
Identities = 103/396 (26%), Positives = 120/396 (30%), Gaps = 23/396 (5%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
P P P SP P P P P+ +PA P P PP P
Sbjct: 2600 APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVP--PPERPRDDPA 2657
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P ++P G + PP P T L DP P P P P
Sbjct: 2658 PGRVSRPRRARRLGRA-AQASSPPQRPRRRAARPTVGSLT---SLADPPPPPPTPEPAPH 2713
Query: 401 PTTPRPTTQPPPICYPGS--PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPR 458
P P + P P PP P TP P P+ PPTT
Sbjct: 2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG--------GPARPARPPTTAG 2765
Query: 459 PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P PP P R RP + + L +DP P PP +PA
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825
Query: 519 PPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCP-RPLPSSPSPPVCYPGSPDPRCPR 577
P+ P S P P P P PPP GS P R P S SP P R
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885
Query: 578 PPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSP 637
P ++ P P PP Q P P P+PQPP P P P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP------PPRP 2939
Query: 638 DPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
P P+ P P VP + P
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
Score = 129 bits (325), Expect = 4e-30
Identities = 116/435 (26%), Positives = 137/435 (31%), Gaps = 22/435 (5%)
Query: 288 PPPICYPGSPDP----RCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
PPP P +P R RP P AP+ G DPR P P P PP P P
Sbjct: 2569 PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRG--DPRGPAPPSPLPPDTHAPDP 2626
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
PPP P + +P PP P P PAP R R PP
Sbjct: 2627 ---PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR-PRRARRLGRAAQASSPPQR 2682
Query: 404 PRPTTQPPPICYPGS-----PDPRCPRPPPSPTPTTTPAPI--CYPGSNDPRCPSPPPTT 456
PR P + S P P P P P + TP P P P+ P
Sbjct: 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPT----PTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
P P P PP+P P P + +R P P
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802
Query: 513 PPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPD 572
P P V P + P P PPP +P P P PS P PG
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDV 2862
Query: 573 PRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLC 632
R P SP + R RP + P R P+PQ P P
Sbjct: 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
Query: 633 YPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPR 692
P P P+ P PP P P P P + DP QP++ + V P+
Sbjct: 2923 PPPPPQPQPPPPPPPRPQPPLAP-TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981
Query: 693 PIPPPLCYPGSTDPR 707
P P ST P
Sbjct: 2982 PAPSREAPASSTPPL 2996
Score = 123 bits (310), Expect = 2e-28
Identities = 102/404 (25%), Positives = 117/404 (28%), Gaps = 52/404 (12%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRP-------------PPSPTPTTTPAPICYPGSNDPRCP 328
P P + PP + P P P P PP P PAP R
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGS-----PDPRCPRPPPSPTPTTTPTTPAPLVCY- 382
R PP PR P + S P P P P P + TP P P
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 383 ------------PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 430
P P P P PPTT P PP P R RP +
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
Query: 431 TPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP--PVCYPGSPDPRCPRPPPSPTPTTP 488
+ + DP P P P P+ P S P P PPP P P +
Sbjct: 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850
Query: 489 APLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGS 548
GS P R PP P PA P P R P + +
Sbjct: 2851 PL----GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR-----PAVSRSTESFALP 2901
Query: 549 PDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYV 608
PD P P +P PP P P P P+PP P P PR P T +
Sbjct: 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP----------PRPQPPLAPTTDPAG 2951
Query: 609 CYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPT 652
S P P + P P R S TP
Sbjct: 2952 AGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995
Score = 110 bits (276), Expect = 2e-24
Identities = 90/391 (23%), Positives = 105/391 (26%), Gaps = 35/391 (8%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P P +P P P +P AP P P P P PPTT
Sbjct: 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA 2764
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP--------LVCYPGSNDPRC--- 390
P PP P R RP + + + P+P V P + P
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824
Query: 391 -PTRPPPPPPPPTTPRPTTQPPPICYP--GSPDPRCP---RPPPSPTPTTTPAPICYPGS 444
PPP PT P P PPP P GS P RPP AP P
Sbjct: 2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVR 2884
Query: 445 NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT 504
R T P P P+ PP P P P P P P
Sbjct: 2885 RLARPAVSRSTESFALPPDQP------ERPPQPQAPPPPQPQPQPPPPPQPQPP-PPPPP 2937
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
RP PP P P P P+ + P P P S+P
Sbjct: 2938 RPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPL- 2996
Query: 565 VCYPGSPDPRCPRPPS-------PTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPR 617
G R S P V ++ P + D
Sbjct: 2997 ---TGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLE 3053
Query: 618 CPRPQPPQPSPTPLCYPGSPDPRCPRPPSPS 648
P PP+P P P SPS
Sbjct: 3054 ALDPLPPEPHDPFAHEPDPATPEAGARESPS 3084
Score = 109 bits (273), Expect = 6e-24
Identities = 121/488 (24%), Positives = 140/488 (28%), Gaps = 78/488 (15%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYP------ 383
R P P P G PDP P P P P P +P
Sbjct: 2481 RRPAEARFPFAAGAAPDPGGG---GPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWI 2537
Query: 384 ------GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP----RCPRPPPSPTPT 433
S+D P P PP PP P + PPP P +P R RP P
Sbjct: 2538 RGLEELASDDAGDPPPPLPPAAPPAAPDRSV-PPPRPAPRPSEPAVTSRARRPDAPPQSA 2596
Query: 434 TTPAPICYPGSN-----------DPRCPSPPPTTPRP-TTQPPPVCYPGSPDPRCPRPPP 481
AP+ G D P PPP +P P +P P P P P PR P
Sbjct: 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656
Query: 482 SPTPTTPAPLVCYPG-----SSDPRCPTRPP-------------PPPPPPPTTPAPPVCY 523
+P + G SS P+ P R PPPPPP PAP
Sbjct: 2657 APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV 2716
Query: 524 PGSNDPRCPR-------PTPTTPPPPQCYLGSPDPRCPRPL--------PSSPSPPVCYP 568
+ P P P P PP G P P P +P+PP
Sbjct: 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776
Query: 569 GSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSP 628
P R RP P P PP V P + P P P P P
Sbjct: 2777 AGPPRRLTRPAV-ASLSESRESLPSPWDPADPPAA----VLAPAAALPPAASPAGPLPPP 2831
Query: 629 TPLCYPGSPDPRCPRPPSPSPTPTCYPGSP---DPRCRPSVPPPTSQPFIPVGLTPFVCT 685
T P P P PPS + PG P R P + PV
Sbjct: 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891
Query: 686 CNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPE 745
T +PP P + P P P P P RP P
Sbjct: 2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP-----QPQPPPPPPPRPQPPLAPT 2946
Query: 746 TYLPPLPD 753
T +
Sbjct: 2947 TDPAGAGE 2954
Score = 87.3 bits (216), Expect = 3e-17
Identities = 127/551 (23%), Positives = 164/551 (29%), Gaps = 46/551 (8%)
Query: 352 YPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
+PG+P R RP + P P P G P P PP P+ P P
Sbjct: 2474 FPGAPVYR--RPAEARFPFAAGAAPDP----GGGGPP-----DPDAPPAPSRLAPAILP- 2521
Query: 412 PICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQ--PPPVCYP 469
P P T + + DP P PP P + PPP P
Sbjct: 2522 ------DEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAP 2575
Query: 470 GSPDP----RCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPG 525
+P R RP P P V G P P PP P P PP P
Sbjct: 2576 RPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP-DPPPPSPSPA 2634
Query: 526 SNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEY 585
+N+P P PPP + R RP + SP P+ PR + P
Sbjct: 2635 ANEPDPHPPPT-VPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAARPTV 2692
Query: 586 VCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPP 645
DP P P P +P P P P P P
Sbjct: 2693 GSLTSLADPPPPPPTP-------------EPAPHALVSATPLPPGPAAARQASPALPAAP 2739
Query: 646 SPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTD 705
+P P P +P RP+ PP T+ P P RP L +
Sbjct: 2740 APPAVPAG-PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
Query: 706 PRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLPDSASEYSIKRDVG 765
P P + P + + PL P ++ QP PP + V
Sbjct: 2799 P-SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
Query: 766 LNCHPGSNDPKCNEISIPPNNQKGGLLRTESSSLGKGEVHEALFQLNKELGLTDDKKEFA 825
P + + P + + R ++ + AL E
Sbjct: 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917
Query: 826 HFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPA 885
P P P PPQ P P P P+PP +PTT P P+ L P A
Sbjct: 2918 ----QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
Query: 886 PPQCYPGSPDP 896
P+ P P
Sbjct: 2974 VPRFRVPQPAP 2984
Score = 72.3 bits (177), Expect = 9e-13
Identities = 72/304 (23%), Positives = 87/304 (28%), Gaps = 39/304 (12%)
Query: 274 GKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP 333
L + + P P + PP+ +P P P P PPP
Sbjct: 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
Query: 334 PPPP---------PTTPRPTTQPPPICYPGSPDP---RCPRPPPSPTPTTTPTTPAPLVC 381
P P RP ++ P P R RP S + + P
Sbjct: 2848 PSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP-- 2905
Query: 382 YPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY 441
PP P P P+P QPPP P P P PRP P PTT PA
Sbjct: 2906 -----------ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP---LVCYPGSS 498
P P P P P P P P S P T + + S
Sbjct: 2955 P---SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSL 3011
Query: 499 DPRCPTRPPP--------PPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD 550
T PPP PP + A + S P P P + PD
Sbjct: 3012 ALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPD 3071
Query: 551 PRCP 554
P P
Sbjct: 3072 PATP 3075
Score = 54.9 bits (132), Expect = 2e-07
Identities = 65/235 (27%), Positives = 74/235 (31%), Gaps = 24/235 (10%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
T R T PPP P+ P +P A + P P PPPP P
Sbjct: 271 TARGATGPPP-----PPEAAAPNGAAAPPDGVWGAALAGAPLALPAPP--DPPPPAPAGD 323
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS-NDPRCPTRPPPPPP 399
SP PR P P P P P S D P
Sbjct: 324 AEEEDDEDGAMEVVSPLPR----PRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRAS 379
Query: 400 PPTTPR---PTTQPPPICYPGSPDPRCPRPP-PSPTPTTTPAPICYPGSNDPRCPSPPPT 455
PT R P PG D P P P+ PT P P+ P PPP
Sbjct: 380 LPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV-------PASAPPPPA 432
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
TP P+ +P P P R P P P+ P P + D RPP PP
Sbjct: 433 TPLPSAEPGSDDGPAPPPERQP-PAPATEPAPDDPDDATRKALDALRERRPPEPP 486
Score = 50.7 bits (121), Expect = 4e-06
Identities = 63/266 (23%), Positives = 76/266 (28%), Gaps = 26/266 (9%)
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSS 498
I +P D P+PPP + P + P P P V G++
Sbjct: 244 ISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVW--GAA 301
Query: 499 DPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLP 558
P P PP PPP PA D +P P LG P R P P
Sbjct: 302 LAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTP 361
Query: 559 SSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRC 618
S + R P R R + PG D
Sbjct: 362 PSSLEDLSAGRHHPKRASLPT---------------RKRRSARHAATPFARGPGGDDQ-- 404
Query: 619 PRPQPPQPSPTPLCYPGSPDPRCPRPPSPS-PTPTCYPGSPDPRCRPSVPPPTSQPFIPV 677
RP P P+ P P PP P+ P P+ PGS D P P + P
Sbjct: 405 TRPAAPVPASVPT--PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPA 462
Query: 678 GLTPFVCTCNV----TTPRPIPPPLC 699
P T RP PP
Sbjct: 463 PDDPDDATRKALDALRERRPPEPPGA 488
Score = 46.1 bits (109), Expect = 1e-04
Identities = 52/249 (20%), Positives = 64/249 (25%), Gaps = 22/249 (8%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P P T R T PPP +P+ P AP+ P DP P
Sbjct: 259 PVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPP-P 317
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P SP PR + P P P P S + R P
Sbjct: 318 PAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKR 377
Query: 511 PPPPTT---PAPPVCYP---GSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
PT A P G RP P P P+ P
Sbjct: 378 ASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASV-------------PTPAPTPVP 424
Query: 565 VCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPR--PQ 622
P P P + + P P P P + ++D R P+
Sbjct: 425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPE 484
Query: 623 PPQPSPTPL 631
PP L
Sbjct: 485 PPGADLAEL 493
Score = 43.0 bits (101), Expect = 0.001
Identities = 53/235 (22%), Positives = 67/235 (28%), Gaps = 23/235 (9%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
P PPP + P + P P P P G+
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAA-PNGAAAPPDGVWGAALAGAPLALPAPP 313
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP------PPSPTPTTTPAPICYPGSNDP 447
PPPP P SP PR PR P PT TP S
Sbjct: 314 DPPPPAPAGDAEEEDDEDGAMEVVSPLPR-PRQHYPLGFPKRRRPTWTPPSSLEDLSAGR 372
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPP 507
P PT + + +P R P P P P + P + PP
Sbjct: 373 H---HPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPP 429
Query: 508 PPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
PP P P+ PGS+D P PP Q + +P P ++
Sbjct: 430 PPATPLPSAE------PGSDD------GPAPPPERQPPAPATEPAPDDPDDATRK 472
Score = 30.7 bits (69), Expect = 5.6
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P P P +P P PP P TP P PGS D P P P PA
Sbjct: 404 QTRPAAPVPASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPERQPPAPATEPA 462
Query: 890 YPGSPDPWSQ 899
D +
Sbjct: 463 PDDPDDATRK 472
Score = 29.9 bits (67), Expect = 9.6
Identities = 22/94 (23%), Positives = 26/94 (27%), Gaps = 8/94 (8%)
Query: 274 GKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP 333
G + P P P P PP +P P+ P P PP
Sbjct: 400 GGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPG--------SDDGPAPPPE 451
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 367
PP P P + D R PP P
Sbjct: 452 RQPPAPATEPAPDDPDDATRKALDALRERRPPEP 485
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 88.7 bits (220), Expect = 9e-18
Identities = 71/388 (18%), Positives = 96/388 (24%), Gaps = 27/388 (6%)
Query: 284 PTTQPPPICYPGSPDPRCPRP---PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
+PP + D + + D P PPP P
Sbjct: 20 FFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEA 79
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P ++ P + P P SPTP + P P PPP PP
Sbjct: 80 PANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP------------PPTPPPASPP 127
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
P+ ++ P P P +P + SP T P+
Sbjct: 128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
PP P S P P P + + P + R ++
Sbjct: 188 --SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245
Query: 521 VCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPS 580
C G + CP P P P + P P S SP R P P
Sbjct: 246 GCGWGPEN-ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASS----SSSPRERSPSPSP 300
Query: 581 PTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPR 640
+P P S + S + SP P R
Sbjct: 301 SSPGSGPAPSSPRASSSSSSSRESSS-----SSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
Query: 641 CPRPPSPSPTPTCYPGSPDPRCRPSVPP 668
P P PS S P +
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSPAASAG 383
Score = 80.6 bits (199), Expect = 3e-15
Identities = 88/394 (22%), Positives = 104/394 (26%), Gaps = 57/394 (14%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P T PPP +P P T PA GS P P+ P PPPP P
Sbjct: 63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTP- 121
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
PP SP P+ P L P + P
Sbjct: 122 -----------------------PPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAS 158
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
P P S R P SP P P P + P
Sbjct: 159 PAAVASDAASSRQAALPLSSPEETARAPSSP-----------PAEPPPSTPPAAASPRPP 207
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
P SP P R + + S P P P P P T
Sbjct: 208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT 267
Query: 520 PVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPP 579
+ + RP P + SP R P P PSSP PR
Sbjct: 268 RIWEASGWNGPSSRPGPASSS------SSPRERSPSPSPSSPGSGPAPSS---PRASSSS 318
Query: 580 SPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDP 639
S + E S R + PG R P P P P P S
Sbjct: 319 SSSRESSSSSTSSSSESSRGAAVS-------PGPSPSRSPSPSRPPPPADP-----SSPR 366
Query: 640 RCPRPPSPSPTPTCYPGSPDP-RCRPSVPPPTSQ 672
+ PRP +P G P R R +V +
Sbjct: 367 KRPRPSRAPSSPAASAGRPTRRRARAAVAGRARR 400
Score = 59.0 bits (143), Expect = 1e-08
Identities = 59/271 (21%), Positives = 76/271 (28%), Gaps = 15/271 (5%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
T P P P P P SP P +PI S+ P R ++
Sbjct: 180 EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDS 239
Query: 344 TTQPPPICYPGSPDPRCPRPPPS----PTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
++ C G P+ CP P P+ PT + PG R P P
Sbjct: 240 SSSESSGCGWG-PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSP 298
Query: 400 PPTTPR--PTTQPPPICYPGSPDP------RCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
P++P P P S S +P P + R P
Sbjct: 299 SPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR-PP 357
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
PP P +P P P SP RP A ++ RP P P
Sbjct: 358 PPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPL 417
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P P +PPPP
Sbjct: 418 DAGAASGAF-YARYPLLTPSGEPWPGSPPPP 447
Score = 52.5 bits (126), Expect = 9e-07
Identities = 82/434 (18%), Positives = 99/434 (22%), Gaps = 60/434 (13%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
P P GS T A P P P P
Sbjct: 22 PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPA 81
Query: 514 PTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDP 573
+ + P + P P + PP SPDP P P P+SP P S
Sbjct: 82 NESRSTPTWSLSTLAPASPAREGSPTPPGP---SSPDPPPPTPPPASPPPSPAPDLSEML 138
Query: 574 RCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCY 633
R P P P P + S + P P P P
Sbjct: 139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198
Query: 634 PGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRP 693
P + PR PR SP P R +S + P P
Sbjct: 199 PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLP 258
Query: 694 IPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLPD 753
P P T P E G P SS+ E P P
Sbjct: 259 RPAP-----ITLPTRIWEAS------------GWNGPSSRPGPASSSSSPRERSPSPSPS 301
Query: 754 SASEYSIKRDVGLNCHPGSNDPKCNEISIPPNNQKGGLLRTESSSLGKGEVHEALFQLNK 813
S P S + S ++ +ESS
Sbjct: 302 SPGSGP---------APSSPRASSSSSSSRESSSSSTSSSSESS---------------- 336
Query: 814 ELGLTDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPR 873
R + + P P P P P SP P P SP
Sbjct: 337 ---------------RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381
Query: 874 CPRPPLSPTTPAPP 887
RP A
Sbjct: 382 AGRPTRRRARAAVA 395
Score = 44.8 bits (106), Expect = 2e-04
Identities = 40/212 (18%), Positives = 51/212 (24%), Gaps = 35/212 (16%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPP----- 336
P P T P I + RP P+ + ++ P + P P P
Sbjct: 260 PAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS 319
Query: 337 -------PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
T+ + PG R P P P P + R
Sbjct: 320 SSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRK-----------R 368
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 449
P P + RPT R P P P P
Sbjct: 369 PRPSRAPSSPAASAGRPT---RRRARAAVAGRARRRDATGRFPAGRPRPS--PLDAGAAS 423
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
+ P T G P P P PPP
Sbjct: 424 GAFYARYPLLTPS-------GEPWPGSPPPPP 448
Score = 40.9 bits (96), Expect = 0.004
Identities = 38/185 (20%), Positives = 45/185 (24%), Gaps = 20/185 (10%)
Query: 374 TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 433
PA L +P P R PP + P P S +
Sbjct: 763 LVPAKLAEALALLEPAEPQRGAGSSPPVR-AEAAFRRPGRLRRSGPAADAASRTASKRKS 821
Query: 434 TTPAPICYPGSNDPRCPSPPPTTPRPTTQ----------PPPVCYPGSPDPRCPRPPPSP 483
+ P S+ P P P P + R P P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDP-----RCPRPTPTT 538
P AP + P P P P P P PG DP R P T
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMP----PGGPDPRGGFRRVPPGDLHT 937
Query: 539 PPPPQ 543
P P
Sbjct: 938 PAPSA 942
Score = 39.8 bits (93), Expect = 0.007
Identities = 66/392 (16%), Positives = 86/392 (21%), Gaps = 29/392 (7%)
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLP-SSPSP 563
P PP A GS + D P P P
Sbjct: 18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT 77
Query: 564 PVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQP 623
S + P GS P P P P P P
Sbjct: 78 EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP------------PPTPPPAS 125
Query: 624 PQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFV 683
P PSP P S R P P P + P S + Q +P+
Sbjct: 126 PPPSPAP---DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182
Query: 684 CTCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQ 743
++P PPP P + PR PR + S P R +S+
Sbjct: 183 ARA-PSSPPAEPPPSTPPAAASPRPPRRSSPISASASS---PAPAPGRSAADDAGASSSD 238
Query: 744 PETYLPPLPDSASEYSIKRDVGLNCHPGSNDPKCNEISIPPNNQKGGLLRTESSSLGKGE 803
+ E P + N SSS +
Sbjct: 239 SSSSESSGCGWGPENECPLPR----PAPITLPTRIWEASGWNGPSSRPGPASSSSSPRER 294
Query: 804 VHEALFQLNKELGLTDDKKEFAHFYRTPSPTT-PAPPQCYPGSPDPRCPRPPPSPTTPAP 862
+ A + S + + S P PSP+
Sbjct: 295 SPSP--SPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPS 352
Query: 863 PQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSP 894
P P P P P S
Sbjct: 353 PS--RPPPPADPSSPRKRPRPSRAPSSPAASA 382
Score = 38.6 bits (90), Expect = 0.019
Identities = 35/161 (21%), Positives = 44/161 (27%), Gaps = 12/161 (7%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
+ P P S + + P S+ P P PPP +
Sbjct: 791 RAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARS 850
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
+ P + R P P P P AP + P P P P
Sbjct: 851 SESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPR 910
Query: 401 PT-TPRPTTQPPPICYPGSPDPRCP--RPPPSPTPTTTPAP 438
P P PG PDPR R PP T P+
Sbjct: 911 VKLGPMP---------PGGPDPRGGFRRVPPGDLHTPAPSA 942
Score = 38.2 bits (89), Expect = 0.022
Identities = 38/173 (21%), Positives = 46/173 (26%), Gaps = 14/173 (8%)
Query: 324 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYP 383
+P P R PP +P + G R +
Sbjct: 776 EPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESS-- 833
Query: 384 GSNDPRCPTRPPPP--PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY 441
P RPP PPP +++ P G + R P P
Sbjct: 834 ------GPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAA 887
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYP---GSPDPR-CPRPPPSPTPTTPAP 490
P P PRP P P G PDPR R P TPAP
Sbjct: 888 PPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAP 940
Score = 37.1 bits (86), Expect = 0.058
Identities = 32/170 (18%), Positives = 40/170 (23%), Gaps = 15/170 (8%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
P P +P + R P R ++ +
Sbjct: 775 LEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSG 834
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDP-------RCPTRPPPPPPPPTTPRPTTQPPPICY 415
P P P + R P PP P P P
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP-----RCPSPPPTTPRPT 460
PRP P+P P P PG DP R P TP P+
Sbjct: 895 APPAGAPAPRPRPAPRVKLGPMP---PGGPDPRGGFRRVPPGDLHTPAPS 941
Score = 34.0 bits (78), Expect = 0.46
Identities = 20/164 (12%), Positives = 29/164 (17%), Gaps = 6/164 (3%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
P + P P R + + +
Sbjct: 761 PSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRK 820
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPT 535
P + P ++ P P G PR P P
Sbjct: 821 SRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPR 880
Query: 536 PTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPP 579
+P P+ P P P PP
Sbjct: 881 ARPGAA------APPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918
>gnl|CDD|173408 PTZ00116, PTZ00116, signal peptidase; Provisional.
Length = 185
Score = 72.4 bits (177), Expect = 2e-14
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 173 TTYIQYNSSPVRQNLLLKNVPDYSASREEN-DLGFITFDLQANLTKIFNWNVKQLFLYLT 231
T++ ++ + N+ +K+V +R D ++ DL +++K FNWN+KQLFLY+
Sbjct: 29 TSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLYVL 88
Query: 232 AEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDGKGLK 278
Y TP V N+V++ D II + A +KN TKY D GL+
Sbjct: 89 VTYETPEKVKNEVIIQDYIITNKKQAKKTYKNFITKYSLKDYNNGLR 135
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 72.2 bits (177), Expect = 7e-13
Identities = 37/220 (16%), Positives = 46/220 (20%), Gaps = 17/220 (7%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
+ P P P P P P +P + P P L
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP--AAAPAAAAAARAVAAAPARRSPAPEAL 433
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
++ P P P P P P P P P PA
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAA-RPAAAGPRPVAAAAAAAPARAAPAAAPA-- 490
Query: 440 CYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSD 499
P P P + PP +P P + P P P +
Sbjct: 491 ------------PADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAF 538
Query: 500 PRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTP 539
P P P PV P
Sbjct: 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
Score = 69.5 bits (170), Expect = 5e-12
Identities = 41/214 (19%), Positives = 51/214 (23%), Gaps = 17/214 (7%)
Query: 374 TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 433
PA P + P P P P P + SP P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 434 TTPAPICYPGSNDPRCPSPPPT---TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
A P+P P P +P P + PAP
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
Query: 491 LVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCY----PGSNDPRCPRPTPTTPPPPQCYL 546
P + P P P P PA V P + DP T P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA---- 547
Query: 547 GSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPS 580
P P ++ + PV P P P
Sbjct: 548 ------APAPRAAAATEPVVAPRPPRASASGLPD 575
Score = 67.6 bits (165), Expect = 2e-11
Identities = 35/202 (17%), Positives = 43/202 (21%), Gaps = 10/202 (4%)
Query: 286 TQPPPICYPGSPDPRCPRPPPSP-TPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT 344
P P P+ P P + R P +P P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 345 TQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP 404
P P P+P PR P P
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAA------GPRPVAAAAAAAPARAAP 485
Query: 405 RPTTQPPPICYPGSPDPRCPRPPPSPTP-TTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
P P P P SP P AP + + P + P T P
Sbjct: 486 AAAPAPADDDPP--PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 464 PPVCYPGSPDPRCPRPPPSPTP 485
P P P +P P
Sbjct: 544 APAAAPAPRAAAATEPVVAPRP 565
Score = 66.8 bits (163), Expect = 3e-11
Identities = 39/215 (18%), Positives = 43/215 (20%), Gaps = 17/215 (7%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR----CPTRPPPP 334
+ P P P P P A P P R
Sbjct: 382 VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRP 394
P P P P +P P P A P P P
Sbjct: 442 RGPGGAPAPAPAPAA-----APAAAARPAAAGPRPV-----AAAAAAAPARAAPAAAPAP 491
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
PPP P P P P P T + +P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-- 549
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPA 489
PR PV P P P PA
Sbjct: 550 -APRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
Score = 62.2 bits (151), Expect = 9e-10
Identities = 42/234 (17%), Positives = 54/234 (23%), Gaps = 41/234 (17%)
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTT 456
P P P + P PP +P A + P SP P
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
Q G+P P P P +P RP
Sbjct: 433 LAAARQASARGPGGAPAP-APAPAAAPAAAARPAAA----------GPRPVAAAAAAAPA 481
Query: 517 PAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCP 576
A P P P PPP + LP + P +P
Sbjct: 482 RAAP--------AAAPAPADDDPPPWE------------ELPPEFASP-----APAQPDA 516
Query: 577 RPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTP 630
P E + P + DP + PR P +P P
Sbjct: 517 APAGWVAESIPDPATADPDDAFETLAPAP-----AAAPAPRAAAATEPVVAPRP 565
Score = 60.7 bits (147), Expect = 2e-09
Identities = 40/206 (19%), Positives = 49/206 (23%), Gaps = 18/206 (8%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P P QP P P P P P AP + P R P P
Sbjct: 373 GPATAAAAPVAQPAPAAAA--PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430
Query: 511 PPPPTTPAPPVCYPGSNDPRCPR----PTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVC 566
PG P P P P ++P+
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA--- 487
Query: 567 YPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRP-QPPQ 625
+P P P P P P P E+ P + DP P
Sbjct: 488 -APAPADDDPPPWEELPPEFASPAPAQPD-AAPAGWVAESIP-DPATADPDDAFETLAPA 544
Query: 626 PSPTPLCYPGSPDPRCPRPPSPSPTP 651
P+ P P P +P P
Sbjct: 545 PAAAPA-----PRAAAATEPVVAPRP 565
Score = 59.9 bits (145), Expect = 4e-09
Identities = 38/205 (18%), Positives = 52/205 (25%), Gaps = 14/205 (6%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
+ P PAP + P PP P + +P R P P
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA----AAPARRSPAP 430
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P P P PR P +P
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPA--AAARPAAAGPR----PVAAAAAAAPARAA 484
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT-TQPPPVCYPGSPDPRCPRPPPS 482
P P+P P P + P+P P + P + DP +
Sbjct: 485 PAAAPAPADDDPPPWEELPP--EFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542
Query: 483 PTPTTPAPLVCYPGSSDPRCPTRPP 507
P P AP +++P RPP
Sbjct: 543 PAP-AAAPAPRAAAATEPVVAPRPP 566
Score = 44.9 bits (106), Expect = 2e-04
Identities = 34/202 (16%), Positives = 40/202 (19%), Gaps = 2/202 (0%)
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDP-RCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
P P PAP P + P P P P +P
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433
Query: 565 VCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPP 624
+ P+P P P + P P P
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493
Query: 625 QPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPP-PTSQPFIPVGLTPFV 683
P P P P +P PDP T P P
Sbjct: 494 DDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRA 553
Query: 684 CTCNVTTPRPIPPPLCYPGSTD 705
P PP G D
Sbjct: 554 AAATEPVVAPRPPRASASGLPD 575
Score = 37.5 bits (87), Expect = 0.038
Identities = 41/235 (17%), Positives = 55/235 (23%), Gaps = 30/235 (12%)
Query: 524 PGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
PG + T P Q P P++ +P P P +P
Sbjct: 365 PGQSGGGAGPATAAAAPVAQ------------PAPAAAAPAAAAPAPAAPPAAPAAAPAA 412
Query: 584 EYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQP-PQPSPTPLCYPGSPDPRCP 642
+ P P P P P P P +P P + PR
Sbjct: 413 AAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV 472
Query: 643 RPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPG 702
+ + P + PP P +P P P G
Sbjct: 473 AAAAAAAPARAAPAAAPAPADDDPPPWEELP------------PEFASPAPAQPDAAPAG 520
Query: 703 STDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLPDSASE 757
P P P F P P + E + P P AS
Sbjct: 521 WVAESIPD----PATADPDDAFETLAPAPAAAPA-PRAAAATEPVVAPRPPRASA 570
Score = 30.2 bits (68), Expect = 6.4
Identities = 16/74 (21%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPT-----TPAPPQCYPGSPDPRCPRPPLSPTT 883
R+P+P A + P P P+P P P P
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485
Query: 884 PAPPQCYPGSPDPW 897
A P P PW
Sbjct: 486 AAAPAPADDDPPPW 499
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 72.3 bits (178), Expect = 8e-13
Identities = 45/201 (22%), Positives = 55/201 (27%), Gaps = 5/201 (2%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
PG+ P P PP RP P P +P P P+ A
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPA-APAAPAPAGAAAAPAEASAAPAPGVAAP 650
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
+P + P PPP P +P P P P P
Sbjct: 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP- 709
Query: 440 CYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSD 499
P + PP + + P P P P P PP P PA P +
Sbjct: 710 --PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP-AGAPAQPPPPPAPAP 766
Query: 500 PRCPTRPPPPPPPPPTTPAPP 520
P PPP PP
Sbjct: 767 AAAPAAAPPPSPPSEEEEMAE 787
Score = 67.7 bits (166), Expect = 2e-11
Identities = 41/207 (19%), Positives = 53/207 (25%), Gaps = 12/207 (5%)
Query: 336 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPP 395
P P P P + P P +P P + P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGA----AAAPAEASAAPAP 645
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P P+ P G P P PAP P +P
Sbjct: 646 GVAAPEHHPKHVAVPDAS-DGGDGWPAKAGGAAPAAPPPAPAP---AAPAAPAGAAPAQP 701
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
P P PP + DP +PP + + P P PP P P
Sbjct: 702 APAPAATPPA---GQADDPA-AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757
Query: 516 TPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P PP P + P P+P +
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPPSEEEE 784
Score = 66.2 bits (162), Expect = 5e-11
Identities = 43/216 (19%), Positives = 52/216 (24%), Gaps = 15/216 (6%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
PG+ P P S P PA P P P P P P
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAA---------PAAPAAPAAPAPAGAAAAPAEASAA 642
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP-VCYPGS 471
+ P+ P + +P P+ PP P P P P
Sbjct: 643 PAPGVAAPEHHPKHVAVPDASDGGDG--WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
Query: 472 PDPR---CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
P P P + P P S+ P P PP P P P
Sbjct: 701 PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPP 760
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
P P P P S + S
Sbjct: 761 PPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE 796
Score = 66.2 bits (162), Expect = 6e-11
Identities = 48/219 (21%), Positives = 57/219 (26%), Gaps = 18/219 (8%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
P P + P P +P PAP + P P P+
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
P D P P P PAP P P P
Sbjct: 656 HVAVPDA---SDGGDGW-PAKAGGAAPAAPPPAPAPAA----------PAAPAGAAPAQP 701
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQ 462
P P PP + DP +PP + + P+P P P PP Q
Sbjct: 702 APAPAATPPA---GQADDPA-AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
PPP P PPPSP S D
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE 796
Score = 64.6 bits (158), Expect = 2e-10
Identities = 39/202 (19%), Positives = 49/202 (24%), Gaps = 11/202 (5%)
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
PG+ P P PP RP P P +P P P+ + P
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPA-APAAPAPAGAAAAPAEASAAPAPGVAAP 650
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
+ P + + P P P P AP P
Sbjct: 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP-----AQPAPAP 705
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
PP P P P P PP+ P P
Sbjct: 706 AATPPAGQADDPAAQPPQA--AQGASAPSPAADDPVPLPPE---PDDPPDPAGAPAQPPP 760
Query: 563 PPVCYPGSPDPRCPRPPSPTPE 584
PP P + P P P+ E
Sbjct: 761 PPAPAPAAAPAAAPPPSPPSEE 782
Score = 59.2 bits (144), Expect = 7e-09
Identities = 41/212 (19%), Positives = 56/212 (26%), Gaps = 17/212 (8%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P P P P P RP P PA ++ P + P P
Sbjct: 588 VGPAPGAAGGEGPPAPA--SSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
Query: 510 PPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPG 569
P V P ++D P P +P P P++P+
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAP----AAPPPAPAPAAPAAPAGAAPAQP 701
Query: 570 SPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPT 629
+P P P + PP + + D P P P P
Sbjct: 702 APAPAATPPAGQADDP-----------AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750
Query: 630 PLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPR 661
P P P P P+ +P P P
Sbjct: 751 PAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
Score = 57.3 bits (139), Expect = 3e-08
Identities = 49/254 (19%), Positives = 62/254 (24%), Gaps = 47/254 (18%)
Query: 399 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPR 458
P P P P + P P +P PAP + +P P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
Query: 459 PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P P V P + D P + AP P P P P P A
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAP------------PPAPAPAAPAAPAGAA 697
Query: 519 PPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRP 578
P P P P PP + DP P + + + D P P
Sbjct: 698 PAQ----------PAPAPAATPPAG---QADDPAAQPPQAAQGASAP--SPAADDPVPLP 742
Query: 579 PSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPD 638
P P P P P P+ P P S +
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAP--------------------APAAAPAAAPPPSPPSEE 782
Query: 639 PRCPRPPSPSPTPT 652
+PS
Sbjct: 783 EEMAEDDAPSMDDE 796
Score = 54.2 bits (131), Expect = 3e-07
Identities = 36/186 (19%), Positives = 45/186 (24%), Gaps = 20/186 (10%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P P + P + AP +P + P
Sbjct: 617 APAAPAAPAAP---APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
PPP P +P P P P T PA P
Sbjct: 674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA-------------GQADDPAAQ 720
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
PP + + P P P P P PP P AP P P + P P P
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDP----AGAPAQPPPPPAPAPAAAPAAAPPP 776
Query: 460 TTQPPP 465
+
Sbjct: 777 SPPSEE 782
Score = 53.1 bits (128), Expect = 6e-07
Identities = 23/132 (17%), Positives = 28/132 (21%), Gaps = 14/132 (10%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
+P P +P P A + P P P P P+
Sbjct: 396 AAAPSAAAAAPAAAPAP---AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
P P P P PP P P P P
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPT---------AAPAPAPPAAPAPAAAPAAPAAPAA- 502
Query: 414 CYPGSPDPRCPR 425
G+ D R
Sbjct: 503 -PAGADDAATLR 513
Score = 51.5 bits (124), Expect = 2e-06
Identities = 24/109 (22%), Positives = 26/109 (23%), Gaps = 1/109 (0%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPG-SPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
P P P P P + P P P P P P
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P P P P P P P P P P +P PA
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
Score = 50.4 bits (121), Expect = 4e-06
Identities = 31/147 (21%), Positives = 37/147 (25%), Gaps = 25/147 (17%)
Query: 375 TPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT 434
A P + P P P P P P P P+P P
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP--------APAAAPQPAPAPAP 437
Query: 435 TPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCY 494
PAP G+ PP P+ QP P P + P P+P
Sbjct: 438 APAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA--PAAAPEPTAAPAPAPPAAPAPA---- 491
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPPV 521
P P P PA
Sbjct: 492 -----------AAPAAPAAPAAPAGAD 507
Score = 48.8 bits (117), Expect = 1e-05
Identities = 31/154 (20%), Positives = 36/154 (23%), Gaps = 25/154 (16%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS 385
R P P P P P+ PAP
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPA-----------AAPAPAAAAPAAAAAPAP------- 425
Query: 386 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP-DPRCPRPPPSPTPTTTPAPICYPGS 444
P P P P P P + G+P P P P P AP
Sbjct: 426 -----AAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480
Query: 445 NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
P P+ P P P G+ D R
Sbjct: 481 A-PAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
Score = 48.4 bits (116), Expect = 2e-05
Identities = 25/135 (18%), Positives = 29/135 (21%)
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
R R PA + +P P P P P P
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438
Query: 481 PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
P+P S P P P P P P P P
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
Query: 541 PPQCYLGSPDPRCPR 555
P G+ D R
Sbjct: 499 APAAPAGADDAATLR 513
Score = 47.7 bits (114), Expect = 3e-05
Identities = 40/200 (20%), Positives = 53/200 (26%), Gaps = 21/200 (10%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P P + PAP P R P P P P + P P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAAR-PA-APAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 537 TTPPPPQCYLGSPDPRC---PRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSID 593
P ++ PD P + + P P +P P P P+ P
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA--- 704
Query: 594 PRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTC 653
P P + P QPPQ + + D P PP P P
Sbjct: 705 PAATPPAGQADD-------------PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751
Query: 654 YPGSPDPRCRPSVPPPTSQP 673
P P+ P +
Sbjct: 752 AGAPAQPPPPPAPAPAAAPA 771
Score = 46.9 bits (112), Expect = 5e-05
Identities = 25/140 (17%), Positives = 31/140 (22%), Gaps = 12/140 (8%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
R R PA + P P P
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAA---------- 428
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 418
P+P P+P P P +PA G+ P P P P P P P +
Sbjct: 429 --PQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA 486
Query: 419 PDPRCPRPPPSPTPTTTPAP 438
P P
Sbjct: 487 APAPAAAPAAPAAPAAPAGA 506
Score = 46.5 bits (111), Expect = 6e-05
Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 6/115 (5%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
+P P +P P AP ++ P P P P P P +
Sbjct: 396 AAAPSAAAAAPAAAPAPAAAAP---AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P P P + P P+ P+ P + P P P+
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP---APAAAPAAPAAPAAPA 504
Score = 43.1 bits (102), Expect = 7e-04
Identities = 22/121 (18%), Positives = 26/121 (21%), Gaps = 11/121 (9%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P P + P+P PAP P P P P P
Sbjct: 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP 401
P P + P P+P P P P P P
Sbjct: 459 AAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA-----------PAAPAAPAAPAGAD 507
Query: 402 T 402
Sbjct: 508 D 508
Score = 43.1 bits (102), Expect = 8e-04
Identities = 27/146 (18%), Positives = 31/146 (21%), Gaps = 14/146 (9%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P P P +P P P+ PAP P PP
Sbjct: 670 PAKAGGAAPAAPPPAPAP-AAPAAPAGAAPAQPAP-------------APAATPPAGQAD 715
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP 401
P QPP S P P P P PP
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPP 427
+P + S D R
Sbjct: 776 PSPPSEEEEMAEDDAPSMDDEDRRDA 801
Score = 42.3 bits (100), Expect = 0.001
Identities = 30/141 (21%), Positives = 34/141 (24%), Gaps = 24/141 (17%)
Query: 272 DDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRP 331
DG K P PP P +P P P P P
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPA-PAAPAAPAGAAPAQPAPAPAAT---------PPAGQAD 715
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
P PP + + P P P P P PP P P P
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP--------------AGAPAQPPPP 761
Query: 392 TRPPPPPPPPTTPRPTTQPPP 412
P P P P P+
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEE 782
Score = 41.9 bits (99), Expect = 0.001
Identities = 42/209 (20%), Positives = 54/209 (25%), Gaps = 19/209 (9%)
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPV 565
P P PAP P R P P P +P P ++P+
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAAR-----PAAPAAP----AAPAAPAPAGAAAAPAEAS 640
Query: 566 CYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQ 625
P P P++V P + D P P + P P
Sbjct: 641 AAPAPGVA----APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696
Query: 626 PSPTPLCYP--GSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFV 683
P P P + P + P +P P VP P P
Sbjct: 697 APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP- 755
Query: 684 CTCNVTTPRPIPPPLCYPGSTDPRCPREE 712
P P P P P + P P E
Sbjct: 756 ---AQPPPPPAPAPAAAPAAAPPPSPPSE 781
Score = 37.7 bits (88), Expect = 0.032
Identities = 23/130 (17%), Positives = 32/130 (24%), Gaps = 9/130 (6%)
Query: 475 RCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRP 534
R + P AP ++ P P P + P P P
Sbjct: 384 RLGVAGGAGAPAAAAP----SAAAAAPAAAPAPAAAAPAAAAAPAP---AAAPQP-APAP 435
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDP 594
P PP P ++PS + P P+P P + P
Sbjct: 436 APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAA-PAPAAAP 494
Query: 595 RCPRPPPTTQ 604
P P
Sbjct: 495 AAPAAPAAPA 504
Score = 36.1 bits (84), Expect = 0.089
Identities = 16/120 (13%), Positives = 21/120 (17%), Gaps = 8/120 (6%)
Query: 554 PRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGS 613
P S + + P P + P P P
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA----PAAAPQPAPAPAPAPAPPSPAGNAP 449
Query: 614 IDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
P PS P P + P P +P P
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA----APAPAAAPAAPAAPAAPAG 505
Score = 36.1 bits (84), Expect = 0.10
Identities = 30/159 (18%), Positives = 37/159 (23%), Gaps = 38/159 (23%)
Query: 494 YPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRC 553
G + P P PAP P + P P P P
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA---------- 436
Query: 554 PRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGS 613
P P+ PSP P P P +P+ + P P P
Sbjct: 437 --PAPAPPSPAGNAPAGGAPSPPPAAAPSAQ------------PAPAPA--------AAP 474
Query: 614 IDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPT 652
P P PP P P P+
Sbjct: 475 EPTAAPAPAPPAAPAPA------AAPAAPAAPAAPAGAD 507
Score = 35.7 bits (83), Expect = 0.11
Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 281 TPRPTTQPPP-ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P P PP + P P +P+ PAP + +P P PP P
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP---AAAPEPTAAPAPAPPAAPAP 490
Query: 340 TPRPTTQPPPICYPGSPDPRCPR 362
P P G+ D R
Sbjct: 491 AAAPAAPAAPAAPAGADDAATLR 513
Score = 33.0 bits (76), Expect = 0.85
Identities = 17/62 (27%), Positives = 22/62 (35%)
Query: 833 PTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPG 892
PAPP +P P PPP+ A P P + P +P P P
Sbjct: 436 APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495
Query: 893 SP 894
+P
Sbjct: 496 AP 497
Score = 31.5 bits (72), Expect = 2.4
Identities = 13/60 (21%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPT-TPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
P+ P P P PA +P P P P PA P
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
Score = 30.7 bits (70), Expect = 4.9
Identities = 14/73 (19%), Positives = 17/73 (23%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+ AP P P +P P P P P P +P P
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460
Query: 889 CYPGSPDPWSQNT 901
P P
Sbjct: 461 APSAQPAPAPAAA 473
Score = 30.0 bits (68), Expect = 7.9
Identities = 14/60 (23%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+P P P P P P PT P P P +P PA
Sbjct: 449 PAGGAPSPPPAAAPSAQPAPA-PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
Score = 29.6 bits (67), Expect = 8.8
Identities = 15/71 (21%), Positives = 16/71 (22%), Gaps = 5/71 (7%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPR-----CPRPPLSPTTPA 885
+P AP Q P P P S P PP P
Sbjct: 691 AAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750
Query: 886 PPQCYPGSPDP 896
P P P
Sbjct: 751 PAGAPAQPPPP 761
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 68.7 bits (168), Expect = 9e-12
Identities = 44/276 (15%), Positives = 54/276 (19%), Gaps = 22/276 (7%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
G R P+P A P P
Sbjct: 369 GGGVPARVAGAVPAPGARAAAAVGASAV------PAVTAVTGAAGAALAPKAAAAAAATR 422
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
P P PP + V + +P
Sbjct: 423 AEAPPAAPAPPATADRGDDAADGDAPVPAKANA-----RASADSRCDERDAQPPADSGSA 477
Query: 414 CYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD 473
P S P P+P P+ D R P+ P PP P
Sbjct: 478 SAPASDAPPDAAFEPAP-RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT 536
Query: 474 PRCPRPPPSPTPTTPAPLVCYPG----SSD-PRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
P P A V SSD P P P P
Sbjct: 537 PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAA-----PR 591
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
PTP + R + S +PP
Sbjct: 592 VAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
Score = 56.4 bits (136), Expect = 6e-08
Identities = 40/247 (16%), Positives = 49/247 (19%), Gaps = 40/247 (16%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP-------RPTTQPPPICYPGSPD 357
P T P + TR PP P P P+
Sbjct: 397 PAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKA-NA 455
Query: 358 PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 417
P P P P P+ P P
Sbjct: 456 RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS-----------------------PPP 454
+ P P P P P + P +
Sbjct: 516 ASREDAPAAAAPPAPEARPPT---PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAA 572
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPP-PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
+P P +P P PR PTP A P + R PP
Sbjct: 573 AAAKPAAAPAA-----APKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
Query: 514 PTTPAPP 520
P PP
Sbjct: 628 PWEDIPP 634
Score = 52.2 bits (125), Expect = 1e-06
Identities = 37/265 (13%), Positives = 47/265 (17%), Gaps = 46/265 (17%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
G R P+P A V P P
Sbjct: 369 GGGVPARVAGAVPAPGARAAAAVGASAV----------PAVTAVTGAAGAALAPKAAAAA 418
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
P P PP + A P + + PP +
Sbjct: 419 AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478
Query: 473 DPRCPRPPPSP----TPTTPAPLVCYPGSSDPRCPT------RPPPPPPPPPTTPAPPVC 522
P PP + D R P P PP P P
Sbjct: 479 APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT-- 536
Query: 523 YPGSNDPRC-----------------------PRPTPTTPPPPQCYLGSPDPRCPRPLPS 559
P + P P +P P PR
Sbjct: 537 -PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQ 595
Query: 560 SPSPPVCYPGSPDPRCPRPPSPTPE 584
P+P P +
Sbjct: 596 VPTPRARAATGDAPPNGAARAEQAA 620
Score = 39.8 bits (93), Expect = 0.007
Identities = 30/190 (15%), Positives = 38/190 (20%), Gaps = 19/190 (10%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPP-PP 338
P S D RC P P S+ P P P P
Sbjct: 442 AADGDAPVPAKANARASADSRCD--ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP---------------LVCYP 383
+ P P + P P P P TPA ++
Sbjct: 500 SAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA 559
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 443
G P P P PR +
Sbjct: 560 GMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPT-PRARAATGDAPPNGAARAEQ 618
Query: 444 SNDPRCPSPP 453
+ + R PP
Sbjct: 619 AAESRGAPPP 628
Score = 32.1 bits (73), Expect = 1.4
Identities = 27/119 (22%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 310 PTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 369
P P + R P P T PP + R P P
Sbjct: 571 AAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWE 630
Query: 370 TTTPTTPAPL---------------VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
P PL V G +D R +P P PP RP PP I
Sbjct: 631 DIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPL--PPAI 687
Score = 31.7 bits (72), Expect = 1.9
Identities = 32/173 (18%), Positives = 40/173 (23%), Gaps = 4/173 (2%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P R P P A V P+ + P++P+
Sbjct: 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKA-AAAAAATRAEAPPAAPA 431
Query: 563 PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPR-- 620
PP D P P P P S P
Sbjct: 432 PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE 491
Query: 621 PQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
P P +P+ PD R P S P P P RP P +
Sbjct: 492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAA-AAPPAPEARPPTPAAAAPA 543
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 58.3 bits (141), Expect = 1e-08
Identities = 45/198 (22%), Positives = 49/198 (24%), Gaps = 12/198 (6%)
Query: 324 DPRCPTRPPPPPPPPTTPRP-TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCY 382
DP PPPP T P +P Y G PR PP P Y
Sbjct: 89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQ--DQLPTARPAY 146
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
P P P + PP SP P P P
Sbjct: 147 PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQ 206
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
D P P PR P PG+ P P P P
Sbjct: 207 RRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVV---------PIR 257
Query: 503 PTRPPPPPPPPPTTPAPP 520
P+ P P P P P
Sbjct: 258 PSAPGPLAAQPAPAPGPG 275
Score = 56.0 bits (135), Expect = 7e-08
Identities = 47/205 (22%), Positives = 57/205 (27%), Gaps = 17/205 (8%)
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP- 519
PPP + +P PRP P P PR P P P P
Sbjct: 95 PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPE 154
Query: 520 PVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPP 579
P +P + D + PP Y SP P P R
Sbjct: 155 PGAWPRAADDYGWQQQRLGFPPRAPY-ASPASYAPEQERDREPYDAGRPEYDQRR-RDYD 212
Query: 580 SPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDP 639
P P++ P P PPP + PG + R P P
Sbjct: 213 HPRPDWD-RPRRDRTDRPEPPPGAGHVHRGGPGPPE----RDDAPVVPIRP--------- 258
Query: 640 RCPRPPSPSPTPTCYPGSPDPRCRP 664
P P + P P PG P R P
Sbjct: 259 SAPGPLAAQPAPAPGPGEPTARLNP 283
Score = 55.2 bits (133), Expect = 1e-07
Identities = 52/210 (24%), Positives = 61/210 (29%), Gaps = 34/210 (16%)
Query: 286 TQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTT 345
PPP + +P PRP P Y G PR RPP P PT
Sbjct: 95 PAPPPPHARRTSEPELPRPGRRP----------YEGYGGPRADDRPPGLPRQDQ--LPTA 142
Query: 346 QPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP----PPP 401
+P YP P P P + +P P P P
Sbjct: 143 RP---AYPAYQQR--PEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPY 197
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRP---PPSPTPTTTPAPICYPGSNDPRCPSPPPTTPR 458
RP D PRP P T P P PG+ P P P
Sbjct: 198 DAGRPEYDQR------RRDYDHPRPDWDRPRRDRTDRPEP--PPGAGHVHRGGPGP--PE 247
Query: 459 PTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
P P +P P +P P+P P P
Sbjct: 248 RDDAPVVPIRPSAPGPLAAQPAPAPGPGEP 277
Score = 53.7 bits (129), Expect = 3e-07
Identities = 51/204 (25%), Positives = 59/204 (28%), Gaps = 31/204 (15%)
Query: 450 PSPPPTTPRPTTQP-----PPVCYPGSPDPRCP--RPPPSPTPTTPAPLVCYPGSSDPRC 502
P+PPP R T++P Y G PR P P YP
Sbjct: 95 PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQ--- 151
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY------LGSPDPRCPRP 556
RP P P PR P +P + P Q G P+ R
Sbjct: 152 --RPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRR 209
Query: 557 LPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDP 616
P P P P PP P +V G P P I P
Sbjct: 210 DYDHPRPDWDRPRRDRTDRPEPP-PGAGHVHRGGPGPPERDDAPVV----------PIRP 258
Query: 617 RCPRPQPPQPSPTPLCYPGSPDPR 640
P P QP+P P PG P R
Sbjct: 259 SAPGPLAAQPAPAP--GPGEPTAR 280
Score = 53.7 bits (129), Expect = 3e-07
Identities = 42/193 (21%), Positives = 50/193 (25%), Gaps = 13/193 (6%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP-DPRCPRPPPSPT-PTTTPTTPA 377
P + +P P P PRP +P Y G D R P P PT P PA
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPRPGRRPYE-GYGGPRADDRPPGLPRQDQLPTARPAYPA 148
Query: 378 PL-----VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP---PPS 429
+P + D + PP P RP
Sbjct: 149 YQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRR 208
Query: 430 PTPTTTPAPICYPGSNDPRCPSPPPTT-PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
P + P PPP P P +P P P P
Sbjct: 209 RDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQP 268
Query: 489 APLVCYPGSSDPR 501
AP PG R
Sbjct: 269 AP-APGPGEPTAR 280
Score = 53.3 bits (128), Expect = 5e-07
Identities = 50/226 (22%), Positives = 56/226 (24%), Gaps = 52/226 (23%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P+ P PPPP R + +P PRP P Y G
Sbjct: 90 PSAGEPAPPPPHARR------------TSEPELPRPGRRP--------------YEGYGG 123
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
PR RPP P P P P RP P P A Y
Sbjct: 124 PRADDRPPGLPRQDQLPTAR--------PAYPA-YQQRPEPGAWP---RAADDYGWQQQR 171
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRP---PPSPTPTTPAPLVCYPGSSDPRCPT 504
PP P RP P P P P
Sbjct: 172 LGF-PPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPE 230
Query: 505 RPP---------PPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
PP P PP P P+ P + P +P P P
Sbjct: 231 PPPGAGHVHRGGPGPPERDDAPVVPIR-PSAPGPLAAQPAPAPGPG 275
Score = 47.9 bits (114), Expect = 2e-05
Identities = 34/164 (20%), Positives = 42/164 (25%), Gaps = 12/164 (7%)
Query: 273 DGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPP 332
+G G RP P P R P P P P +P + D +
Sbjct: 119 EGYGGPRADDRPPGLPR---QDQLPTAR----PAYPAYQQRPEPGAWPRAADDYGWQQQR 171
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPT 392
PP P R P P P P + P
Sbjct: 172 LGFPPRAPYASPASYAPEQERDREPYDAGR-PEYDQRRRDYDHPRPDWDRPRRDRTDRPE 230
Query: 393 RPP----PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 432
PP P P P P +P P +P P+P P
Sbjct: 231 PPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGP 274
Score = 46.4 bits (110), Expect = 6e-05
Identities = 41/184 (22%), Positives = 52/184 (28%), Gaps = 24/184 (13%)
Query: 505 RPPPPPPPPPTTPAP------PVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLP 558
P PPPP T P Y G PR P P Q P R P
Sbjct: 94 EPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQ----LPTARPAYPAY 149
Query: 559 SSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRC 618
P +P + D + + +P P QE + P
Sbjct: 150 QQRPEPGAWPRAADDYGWQQQR-----LGFPPRAPYASPASYAPEQERDREPYDAGRPEY 204
Query: 619 PRPQPPQPSPTP-LCYPGSPDPRCPRPPSPS-------PTPTCYPGSPDPRCRPSVP-PP 669
+ + P P P P PP + P P +P RPS P P
Sbjct: 205 DQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPL 264
Query: 670 TSQP 673
+QP
Sbjct: 265 AAQP 268
Score = 34.4 bits (79), Expect = 0.27
Identities = 27/148 (18%), Positives = 32/148 (21%), Gaps = 27/148 (18%)
Query: 528 DPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVC 587
DP P P P + + +P PRP Y G PR P P
Sbjct: 89 DPSAGEPAPPPPHARR----TSEPELPRPGRRP------YEGYGGPRADDRPPGLPRQ-- 136
Query: 588 YPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYP--GSPDPRCPRPP 645
+ P P YP P P G P P
Sbjct: 137 ------DQLPTARPA-------YPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASP 183
Query: 646 SPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
+ P RP
Sbjct: 184 ASYAPEQERDREPYDAGRPEYDQRRRDY 211
Score = 34.0 bits (78), Expect = 0.43
Identities = 36/171 (21%), Positives = 45/171 (26%), Gaps = 28/171 (16%)
Query: 613 SIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQ 672
++DP P PP P R P P P Y G PR P Q
Sbjct: 87 TVDPSAGEPAPPPPHA----------RRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQ 136
Query: 673 PFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRC 732
+P T RP P + Y QQ FP
Sbjct: 137 DQLP-------------TARPAYPAYQQRPEPGAWPRAADDYGWQQQRL-GFPPRAPYAS 182
Query: 733 PKPLRPSSTFQPETYLPPLPDSASEYSIKRDVGLNCHPGSNDPKCNEISIP 783
P P E P EY +R + P + P+ + P
Sbjct: 183 PASYAPE----QERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRP 229
Score = 33.3 bits (76), Expect = 0.71
Identities = 15/64 (23%), Positives = 16/64 (25%), Gaps = 2/64 (3%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
P YP P P Q PR P SP + AP Q
Sbjct: 135 RQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYA--SPASYAPEQER 192
Query: 891 PGSP 894
P
Sbjct: 193 DREP 196
Score = 31.7 bits (72), Expect = 2.3
Identities = 17/73 (23%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 829 RTPSPTTPAP-PQCYPGSP----DPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTT 883
RT P P P + Y G D R P P P YP P
Sbjct: 104 RTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAAD 163
Query: 884 PAPPQCYPGSPDP 896
Q P
Sbjct: 164 DYGWQQQRLGFPP 176
Score = 29.8 bits (67), Expect = 9.0
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 836 PAPPQCYPGSPDPRCPRPPPSPTTPAP-PQCYPGSPDPRC-PRPPLSPTTPAPPQCYPGS 893
P +P P R P P P + Y G PR RPP P P P
Sbjct: 87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY 146
Query: 894 PD 895
P
Sbjct: 147 PA 148
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 57.0 bits (137), Expect = 4e-08
Identities = 72/307 (23%), Positives = 86/307 (28%), Gaps = 18/307 (5%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
P P PR R P P S +P P P P +P T P
Sbjct: 527 PSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLA 586
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
S P P P P+ TP P P ++ PR + P P P QP
Sbjct: 587 SSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPR---QWPMPLRPIPMRPLRMQPITF 643
Query: 414 CYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD 473
P P P P P +P+ P
Sbjct: 644 NVLVFPTPHQP-------------PQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWA 690
Query: 474 PRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPR 533
P +PPP P + P T PP P PP PG P P
Sbjct: 691 PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP--PA 748
Query: 534 PTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSID 593
P PP G P P +P PP P +P R P+P P P S+
Sbjct: 749 AAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQ 808
Query: 594 PRCPRPP 600
P
Sbjct: 809 LMPRAAP 815
Score = 49.7 bits (118), Expect = 8e-06
Identities = 59/232 (25%), Positives = 67/232 (28%), Gaps = 12/232 (5%)
Query: 286 TQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPP-PPPTTPRPT 344
Q P S P P T+ P P P P R P P P
Sbjct: 593 AQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPH 652
Query: 345 TQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP--RCPTRPPPPPPPPT 402
P P P P T T P+ PG+ P R PT PP PP
Sbjct: 653 QPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPG 712
Query: 403 TPRP-----TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
+ PP PG P P + P P P + R P
Sbjct: 713 RAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 772
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
PT QPPP P P+ RP +PTP P PR P
Sbjct: 773 APTPQPPP---QAPPAPQ-QRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGP 820
Score = 47.0 bits (111), Expect = 5e-05
Identities = 89/363 (24%), Positives = 114/363 (31%), Gaps = 34/363 (9%)
Query: 329 TRPPPPPPPPTT--PRPTTQPP-----PICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVC 381
R P PT RP TQP P+ +P P P P TP PA V
Sbjct: 441 PRATPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQPLPHPQVTPVILHQPPAQGVQ 500
Query: 382 YPGS-------NDPRCPTRPPPPPPPPTTPRP-TTQPPPICYPGSPDPRCPRPPPSPTPT 433
GS +D R PP+ P+P + P Y D P +
Sbjct: 501 AHGSMLDLLEKDDEDMEQRVMATLLPPSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVH 560
Query: 434 TTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVC 493
P G + + P T+ ++ P Y +P P P PS TP P
Sbjct: 561 DQLLPAPGLGPLQIQPLTSPTTSQLASSAPS---YAQTPW---PVPHPSQTPEPPTTQSH 614
Query: 494 YPGSSDPRCPTRPPPPPPPPPTTPAP-PVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPR 552
P +S PR P P P P P P P TP P P
Sbjct: 615 IPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPY 674
Query: 553 CPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPG 612
P P ++ P+ + PR P+P PG P PG
Sbjct: 675 QPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQR--PAAATGRARPPAAAPG 732
Query: 613 SIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRP---PSPSPTPTCYPGSPDPRCRPSVPPP 669
R +PP +P P + R P P + P PG+P P+ P PP
Sbjct: 733 -------RARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPA 785
Query: 670 TSQ 672
Q
Sbjct: 786 PQQ 788
Score = 36.2 bits (83), Expect = 0.098
Identities = 52/234 (22%), Positives = 61/234 (26%), Gaps = 9/234 (3%)
Query: 284 PTTQPPPICYPGSPDPRCPRP----PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P P G P P PP+ P P PG P PP
Sbjct: 711 PGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAA 770
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTT-PAPLVCYPGSNDPRCPTRPPPPP 398
PT QPPP P P P P P PT+ PG P
Sbjct: 771 PGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLT 830
Query: 399 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPR 458
RP+ + P + P P + AP+ YP P + R
Sbjct: 831 GGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQLGSVR 890
Query: 459 P----TTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
T P Y G P P P+ A Y S P
Sbjct: 891 AAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSF 944
Score = 30.0 bits (67), Expect = 7.0
Identities = 61/256 (23%), Positives = 74/256 (28%), Gaps = 17/256 (6%)
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGS-PDPRCPRPLPS------ 559
PP PP P P Y D P T P Q P +PL S
Sbjct: 526 PPSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQL 585
Query: 560 -SPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPR----CPRPPPTTQETYVCYPGSI 614
S +P P P + P P P + PR RP P ++
Sbjct: 586 ASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNV 645
Query: 615 DPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDP---RCRPSVPPPTS 671
QPPQ TP + P PSP+ T P P + P P P
Sbjct: 646 LVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMR 705
Query: 672 QPFIPVGLT--PFVCTCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSID 729
P P G P T P P P + R P + P PG
Sbjct: 706 PPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 765
Query: 730 PRCPKPLRPSSTFQPE 745
P P P+ P+
Sbjct: 766 PPAAAPGAPTPQPPPQ 781
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 56.4 bits (136), Expect = 5e-08
Identities = 29/113 (25%), Positives = 31/113 (27%), Gaps = 23/113 (20%)
Query: 288 PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 347
P P P P P P PTP + P +N P PPP PRP P
Sbjct: 362 PVPAPQPAKPTAAAP-SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420
Query: 348 PPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P P S T P P PP PP
Sbjct: 421 V------------PHTPESAPKLTRAAIPVDEK----------PKYTPPAPPK 451
Score = 55.2 bits (133), Expect = 1e-07
Identities = 28/116 (24%), Positives = 32/116 (27%), Gaps = 26/116 (22%)
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTT 456
P P P +PT +P P P P PS P A P +PPP
Sbjct: 362 PVPAPQPAKPT--------AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
PRP P P P+ P PP PP
Sbjct: 414 PRPVAPPVPH----------TPESAPKLTRAAIPV--------DEKPKYTPPAPPK 451
Score = 53.7 bits (129), Expect = 3e-07
Identities = 28/93 (30%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP--PVCYPGSPDPRCPRPPP 481
P P P P T AP PS P PP PV +P P PRP
Sbjct: 362 PVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPP 514
P P TP ++ P PP PP
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451
Score = 53.7 bits (129), Expect = 4e-07
Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 347 PPPICYPGSPDPRCPRPP-PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPR 405
P P P P P P P+P P+T P A N P PPP PR
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAA------NIPPKEPVRETATPPPVPPR 415
Query: 406 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
P P P P +P T P+ P P+PP
Sbjct: 416 PVAPPVP-----------HTPESAPKLTRAAIPVDEKPKYTP--PAPPK 451
Score = 50.6 bits (121), Expect = 3e-06
Identities = 26/110 (23%), Positives = 30/110 (27%), Gaps = 18/110 (16%)
Query: 433 TTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLV 492
P P P P +P P P P P + P + TP P
Sbjct: 359 LLVPVPAPQPAK--PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP-- 414
Query: 493 CYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P P P P P T A P +P T P PP
Sbjct: 415 ------RPVAPPVPHTPESAPKLTRAAI--------PVDEKPKYTPPAPP 450
Score = 50.6 bits (121), Expect = 3e-06
Identities = 28/105 (26%), Positives = 32/105 (30%), Gaps = 16/105 (15%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P P P P PT AP P PT P P P+ +P
Sbjct: 362 PVPAPQPAK---PTAAAP--------SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP 410
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
P PRP P P T + R P P+ T PP
Sbjct: 411 PVPPRPVAPPVPHTPESA-----PKLTRAAIPVDEKPKYTPPAPP 450
Score = 49.8 bits (119), Expect = 6e-06
Identities = 28/105 (26%), Positives = 31/105 (29%), Gaps = 17/105 (16%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
P P P +PT +P P P P PS P P +P T
Sbjct: 362 PVPAPQPAKPT--------AAAPSPVRPTPAPSTRPKAAAAANIP------PKEPVRETA 407
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
PPP PP P P R P T PAP
Sbjct: 408 TPPPVPPRPVAPPVPHTPE---SAPKLTRAAIPVDEKPKYTPPAP 449
Score = 47.1 bits (112), Expect = 4e-05
Identities = 26/129 (20%), Positives = 29/129 (22%), Gaps = 39/129 (30%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
P P P P T AP P PT P P P+ +
Sbjct: 362 PVPAPQPAKPTAAAP-------SPVRPTPAPSTRPKAAAAANIPPKEPV-----RETA-T 408
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
PP P P P P P P R P P
Sbjct: 409 PPPVPPRPVAPP-------------------VPHTPESAPKLTR-------AAIPVDEKP 442
Query: 422 RCPRPPPSP 430
+ P P
Sbjct: 443 KYTPPAPPK 451
Score = 46.3 bits (110), Expect = 7e-05
Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 19/109 (17%)
Query: 477 PRPPPSP-TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPT 535
P P P P PT AP P P+ P P PV R
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPV--------RETATP 409
Query: 536 PTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
P PP P P L + P P PP+P E
Sbjct: 410 PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT------PPAPPKE 452
Score = 44.0 bits (104), Expect = 4e-04
Identities = 26/92 (28%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPP----- 335
P P QP +P P P P PS P A P T PP PP
Sbjct: 361 VPVPAPQPAKPTAA-APSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 336 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 367
P P TP + P P+ P P
Sbjct: 420 PVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451
Score = 40.2 bits (94), Expect = 0.006
Identities = 26/117 (22%), Positives = 31/117 (26%), Gaps = 28/117 (23%)
Query: 508 PPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCY 567
P P P P P + P P P P+T P P PV
Sbjct: 362 PVPAPQPAKPTAA-----APSPVRPTPAPSTRPKA-----------AAAANIPPKEPV-- 403
Query: 568 PGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPP 624
PP P V P + P T+ P P+ P PP
Sbjct: 404 -----RETATPPPVPPRPVAPP--VPHTPESAPKLTRAA---IPVDEKPKYTPPAPP 450
Score = 38.3 bits (89), Expect = 0.021
Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 830 TPSPTTPAPPQCYPG-SPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
PT AP P +P R + P P +P P PRP P P
Sbjct: 368 PAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES 427
Query: 889 CYPGSP 894
+
Sbjct: 428 APKLTR 433
Score = 37.9 bits (88), Expect = 0.028
Identities = 23/127 (18%), Positives = 29/127 (22%), Gaps = 35/127 (27%)
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTT 538
P P+P P P P P P P+T P
Sbjct: 362 PVPAPQPAKPTA------------AAPSPVRPTPAPSTRPKAAA---------AANIPPK 400
Query: 539 PPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPR 598
P + P P PV P +P P P+
Sbjct: 401 EPVRE----------TATPPPVPPRPVAPPVPH----TPESAPKLTRAAIPVDEKPKYTP 446
Query: 599 PPPTTQE 605
P P +E
Sbjct: 447 PAPPKEE 453
Score = 37.5 bits (87), Expect = 0.034
Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 23/107 (21%)
Query: 597 PRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRP------PSPSPT 650
P P P P P P +P+P P P + P + P
Sbjct: 362 PVPAPQP----------AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP 411
Query: 651 PTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPP 697
P +P P P ++ IPV P P PP
Sbjct: 412 VPPRPVAPPVPHTPESAPKLTRAAIPVDEKP-------KYTPPAPPK 451
Score = 35.6 bits (82), Expect = 0.14
Identities = 15/61 (24%), Positives = 19/61 (31%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPP 337
K P+ +P P PRP P P T + + P PP P
Sbjct: 390 KAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449
Query: 338 P 338
P
Sbjct: 450 P 450
Score = 34.8 bits (80), Expect = 0.23
Identities = 25/108 (23%), Positives = 31/108 (28%), Gaps = 18/108 (16%)
Query: 562 SPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRP 621
P P P P P PTP P P +I P+ P
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPA------------PSTRPKAAA-----AANIPPKEPVR 404
Query: 622 QPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPP 669
+ P P P P +P +P T P P+ P PP
Sbjct: 405 ETATPPPVP-PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451
Score = 34.8 bits (80), Expect = 0.24
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 628 PTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCN 687
P P P P P P P+P P+ P + P P T
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA-----------TPP 410
Query: 688 VTTPRPIPPPLCYPGSTDPRCPREEI 713
PRP+ PP+ + + P+ R I
Sbjct: 411 PVPPRPVAPPVPHTPESAPKLTRAAI 436
Score = 33.2 bits (76), Expect = 0.63
Identities = 15/68 (22%), Positives = 17/68 (25%), Gaps = 3/68 (4%)
Query: 830 TPSPTT-PAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
TP+P+T P P P P P P P P P
Sbjct: 382 TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP--ESAPKLTRAAIPVD 439
Query: 889 CYPGSPDP 896
P P
Sbjct: 440 EKPKYTPP 447
Score = 31.7 bits (72), Expect = 2.0
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRP--PPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
+ P P +P P PRP PP P TP + P +P +P PAPP
Sbjct: 394 AANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTP--PAPP 450
Score = 30.2 bits (68), Expect = 6.8
Identities = 11/61 (18%), Positives = 12/61 (19%), Gaps = 3/61 (4%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPT--TPAPPQCYPGSPDPRCPRP-PLSPTTPAP 886
P A + P P P P P R P P P
Sbjct: 388 RPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPP 447
Query: 887 P 887
Sbjct: 448 A 448
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 54.3 bits (131), Expect = 2e-07
Identities = 25/124 (20%), Positives = 29/124 (23%), Gaps = 3/124 (2%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
P P P+ P P PAP P + P PP P
Sbjct: 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPA 430
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
P + P P+P P T A V P P
Sbjct: 431 AAAPAA---APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
Query: 404 PRPT 407
PT
Sbjct: 488 LTPT 491
Score = 54.0 bits (130), Expect = 3e-07
Identities = 22/143 (15%), Positives = 31/143 (21%), Gaps = 22/143 (15%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
P + TP P P + PA ++
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAP---------VAQAAAAPAPAAAP--AAAASA- 413
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSP 561
P PP PP P P + P P PP + +P
Sbjct: 414 -PAAPPAAAPPAPVAAPAAAA-PAAAPAAAPAAVALAPAPP-----AQAAPETVAIPVRV 466
Query: 562 SPPVCYPGSPDPRCPRPPSPTPE 584
+P P +P
Sbjct: 467 APE---PAVASAAPAPAAAPAAA 486
Score = 52.8 bits (127), Expect = 7e-07
Identities = 20/130 (15%), Positives = 27/130 (20%), Gaps = 9/130 (6%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P TP P P + P P +P + P P
Sbjct: 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPA 430
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P P P +P+ +P P A
Sbjct: 431 AAAPAAAPAAAPAAVA--LAPAPPAQAAPETVAIPVRVAPEPAVASAA-------PAPAA 481
Query: 451 SPPPTTPRPT 460
+P PT
Sbjct: 482 APAAARLTPT 491
Score = 50.9 bits (122), Expect = 3e-06
Identities = 24/149 (16%), Positives = 26/149 (17%), Gaps = 26/149 (17%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P TP P P PA P
Sbjct: 371 EAAAPAEKKTPARPEAAAP----------AAAPVAQAAAAPAPAA-------------AP 407
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
PP P P + PA + P P P P
Sbjct: 408 AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP---APPAQAAPETVAIPV 464
Query: 514 PTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P P V P TP
Sbjct: 465 RVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Score = 50.9 bits (122), Expect = 3e-06
Identities = 21/140 (15%), Positives = 28/140 (20%), Gaps = 20/140 (14%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
+ + P P + P P A P P P PP
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAA--------APAPAAAPAAAASAPAAPPAAAPPA 424
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
+P P P+ P P +P P P
Sbjct: 425 P--VAAPAAAAPAAAPAAAPAAVALA-----PAPPAQAAPETVAIPVRVAPE----PAVA 473
Query: 473 DPRCPRPP-PSPTPTTPAPL 491
P+ TP
Sbjct: 474 SAAPAPAAAPAAARLTPTEE 493
Score = 50.5 bits (121), Expect = 3e-06
Identities = 24/142 (16%), Positives = 34/142 (23%), Gaps = 15/142 (10%)
Query: 376 PAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTT 435
PA + + P RP P P P P + P +P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAA-PVAQAAAAPA--PAAAPAAAASAPAAPPAAAP 422
Query: 436 PAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYP 495
PAP+ P + P + P P P +P+ +P P
Sbjct: 423 PAPVAAPAAAAP--AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA------- 473
Query: 496 GSSDPRCPTRPPPPPPPPPTTP 517
P T
Sbjct: 474 ---SAAPAPAAAPAAARLTPTE 492
Score = 50.1 bits (120), Expect = 5e-06
Identities = 21/141 (14%), Positives = 29/141 (20%), Gaps = 18/141 (12%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
+ P+ PA + P P P PP +P
Sbjct: 374 APAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP--VAAPAA 431
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 418
P P+ P PAP P P P P +
Sbjct: 432 AAPAAAPAAAPAAVALAPAP---------------PAQAAPETVAIPVRVAPEP-AVASA 475
Query: 419 PDPRCPRPPPSPTPTTTPAPI 439
P + T +
Sbjct: 476 APAPAAAPAAARLTPTEEGDV 496
Score = 49.7 bits (119), Expect = 5e-06
Identities = 21/133 (15%), Positives = 25/133 (18%), Gaps = 16/133 (12%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P P P P + P AP +
Sbjct: 371 EAAAPAEKKTPARPEAAAPAA-----------APVAQAAAAPAPAAAP---AAAASAPAA 416
Query: 451 SPPPTTPRPTTQPPPVCYPGSPD--PRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
P P P P +P P P+P V P P
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476
Query: 509 PPPPPPTTPAPPV 521
P P A
Sbjct: 477 PAPAAAPAAARLT 489
Score = 48.9 bits (117), Expect = 1e-05
Identities = 20/147 (13%), Positives = 26/147 (17%), Gaps = 25/147 (17%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
+ + P P + P P P P P PP
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQ----------AAAAPAPAAAPAAAASAPAAPP---A 419
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
+P P + PA + P P P P
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP--------PAQAAPETVAIPVRVAPE-- 469
Query: 414 CYPGSPDPRCPRPPPSPTPTTTPAPIC 440
P TP
Sbjct: 470 --PAVASAAPAPAAAPAAARLTPTEEG 494
Score = 46.2 bits (110), Expect = 7e-05
Identities = 24/168 (14%), Positives = 35/168 (20%), Gaps = 39/168 (23%)
Query: 465 PVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYP 524
P + P + P P PA P PA
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAA---------------APVAQAAAAPAPAAAP--A 408
Query: 525 GSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
+ P P P +P P P++ V +P + P
Sbjct: 409 AAASAPAAPPAAAPPAPVA----APAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464
Query: 585 YVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLC 632
V P P + P + +PT
Sbjct: 465 RV---------APEPAVASAA---------PAPAAAPAAARLTPTEEG 494
Score = 44.7 bits (106), Expect = 2e-04
Identities = 18/100 (18%), Positives = 23/100 (23%), Gaps = 3/100 (3%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P P + P +P P + P P PP
Sbjct: 397 AAAAPAPAAAP---AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
P T P+ P P P+ P TP
Sbjct: 454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Score = 43.9 bits (104), Expect = 3e-04
Identities = 21/145 (14%), Positives = 26/145 (17%), Gaps = 21/145 (14%)
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
P +P TPA P P Q P + P
Sbjct: 366 PAAAAEAAAPAEKKTPAR-----------PEAAAPAAAPVAQAAAAPAPAAAPAAAASAP 414
Query: 481 PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
+P P P P P P A P P P
Sbjct: 415 AAPPAAAP------PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP 468
Query: 541 PPQCYLGSPDPRCPRPLPSSPSPPV 565
P + +
Sbjct: 469 EP----AVASAAPAPAAAPAAARLT 489
Score = 39.3 bits (92), Expect = 0.008
Identities = 22/145 (15%), Positives = 31/145 (21%), Gaps = 22/145 (15%)
Query: 524 PGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P + TP P+ + P +P+ P+ P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP-------AAAASAPAAPP 418
Query: 584 EYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYP---GSPDPR 640
PP P + P P+P P P
Sbjct: 419 A------------AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466
Query: 641 CPRPPSPSPTPTCYPGSPDPRCRPS 665
P P S P R P+
Sbjct: 467 APEPAVASAAPAPAAAPAAARLTPT 491
Score = 33.5 bits (77), Expect = 0.54
Identities = 16/143 (11%), Positives = 29/143 (20%), Gaps = 26/143 (18%)
Query: 555 RPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSI 614
+P ++ + +P P+ P + P P +
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPV----AQAAAAPAPAAAP---------AAAA 411
Query: 615 DPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPF 674
P P+P +P +P+ P P
Sbjct: 412 SAPAAPPAAAPPAPVAAPAAAAPAA--APAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469
Query: 675 IPVGLTPFVCTCNVTTPRPIPPP 697
V + P P
Sbjct: 470 PA-----------VASAAPAPAA 481
Score = 31.6 bits (72), Expect = 2.5
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
P PA + P P+ AP +P P + AP
Sbjct: 383 RPEAAAPAAAP-VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
Score = 31.6 bits (72), Expect = 2.5
Identities = 10/83 (12%), Positives = 16/83 (19%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P PP + P +P + + P P
Sbjct: 414 PAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473
Query: 340 TPRPTTQPPPICYPGSPDPRCPR 362
+ P P +P
Sbjct: 474 SAAPAPAAAPAAARLTPTEEGDV 496
Score = 30.1 bits (68), Expect = 6.3
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 2/66 (3%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
TPA P+ +P + PA S P AP
Sbjct: 376 AEKKTPARPE--AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAA 433
Query: 891 PGSPDP 896
P +
Sbjct: 434 PAAAPA 439
Score = 29.7 bits (67), Expect = 8.1
Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 13/83 (15%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCP------------RPP 878
P+ PAP + P P+ AP +P+ P
Sbjct: 418 PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAP 477
Query: 879 LSPTTPAPPQCYPGSP-DPWSQN 900
PA + P D W
Sbjct: 478 APAAAPAAARLTPTEEGDVWHAT 500
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 53.9 bits (129), Expect = 3e-07
Identities = 87/389 (22%), Positives = 106/389 (27%), Gaps = 25/389 (6%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
S P P P + + + + A P PP P+ P PT + GS
Sbjct: 149 SSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGS 208
Query: 356 PDPRCPRPPPSPTPTT----TPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
P P P P P+ + P P PP + R
Sbjct: 209 PIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSH 268
Query: 412 PICYPGSPDPRCPRPPPSPTPTTTPA-PICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPG 470
P P P P++ P P S P P P P T P
Sbjct: 269 HGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQP 328
Query: 471 SPDPRCPRPPPSPT-------PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCY 523
PR PP+P+ PTTP P + P P P P P P PP
Sbjct: 329 QQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALK 388
Query: 524 PGSNDPRCPRPTPTTPP---PPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPS 580
P S+ P P+ PP PQ P P L S S P P P
Sbjct: 389 PLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPP 448
Query: 581 PTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPR 640
+P S PPP+ + P P
Sbjct: 449 QSPFAQHPFTSGGLPAIGPPPSLPTSTP----------AAPPRASSGSQPPGSALPSSGG 498
Query: 641 CPRPPSPSPTPTCYPGSPDPRCRPSVPPP 669
C P P P D P PPP
Sbjct: 499 CAGPGPPLPPIQIKEEPLDEAEEPESPPP 527
Score = 53.5 bits (128), Expect = 5e-07
Identities = 80/356 (22%), Positives = 98/356 (27%), Gaps = 35/356 (9%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT------TPAPICYPGSNDPRCPTRPPP 333
+ P PT + GSP P P P + P P + P P
Sbjct: 192 SAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQ 251
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP--------------SPTPTTTPTTPAPL 379
P P P PG P P + P + P P P
Sbjct: 252 QSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPS 311
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS---PTPTTTP 436
P S+ P + P PP P P P P P P S P P
Sbjct: 312 QAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGP 371
Query: 437 APICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPG 496
+P SN P P+ P + PT PP P P P+ P + P++
Sbjct: 372 SPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPP--PLQLMPQSQPLQSVPAQPPVLTQSQ 429
Query: 497 SSDPRCPTRPP------PPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD 550
S P+ T P PP P P P P + PP P
Sbjct: 430 SLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPP 489
Query: 551 PRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQET 606
P P P + PE P PR P P PT T
Sbjct: 490 GSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPP----PRSPSPEPTVVNT 541
Score = 51.6 bits (123), Expect = 2e-06
Identities = 81/358 (22%), Positives = 103/358 (28%), Gaps = 29/358 (8%)
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
PP I P PPP+P+ P +P+ P +P P P
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQP-------APQPQQPSPLSLI 227
Query: 404 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
P+ P + P P SP P + + P P P P
Sbjct: 228 SAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQ 287
Query: 464 PPVCYPGSPDPRCPRP-PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
P P P PP P P+ P P S P +PP P PP P +
Sbjct: 288 HPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHI- 346
Query: 523 YPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS----PPVCYPGSPDPRCPRP 578
+ P TP P Q + P + P P P PS PP P S P P
Sbjct: 347 -------KPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPP 399
Query: 579 PSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPD 638
+ P P S P Q + S+ P+ P P +
Sbjct: 400 SAHPPPLQLMPQSQ----PLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQH 455
Query: 639 PRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPP 696
P P P S P+ PP S P G P+PP
Sbjct: 456 PFTSGGLPAIGPPPSLPTS-----TPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPP 508
Score = 41.6 bits (97), Expect = 0.002
Identities = 82/340 (24%), Positives = 105/340 (30%), Gaps = 31/340 (9%)
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCP 477
SP P+ S + ++ + P P PP P+ PP P P+
Sbjct: 151 SPSIPSPQDNESDSDSSAQQQLLQP-QGPPSIQVPPGAALAPSAPPPTPSAQAVP-PQGS 208
Query: 478 RPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP---------PPTTPAPPVCYPGS-- 526
P P P S+ P R P P PP P PAP +P S
Sbjct: 209 PIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSH 268
Query: 527 NDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYV 586
+ P P P P S +P P L S PP+ P P PPS +
Sbjct: 269 HGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSAL-- 326
Query: 587 CYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPS 646
PR PP ++ P P P PQ P S + P P P +
Sbjct: 327 --QPQQPPREQPLPPAPSMPHIKPP----PTTPIPQLPNQSHKHPPHLQGPSPFPQMPSN 380
Query: 647 PSPTPTCYPGSPDPRCRPSVPP-------PTSQPFIPVGLTPFVCTCNVTTPRPIPPPLC 699
P P P S P P P SQP V P V T + + P P
Sbjct: 381 LPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLP---PKAST 437
Query: 700 YPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPS 739
+P S P + + S P P P+
Sbjct: 438 HPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPA 477
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 52.8 bits (127), Expect = 3e-07
Identities = 27/146 (18%), Positives = 35/146 (23%), Gaps = 12/146 (8%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
P P P + PP P P
Sbjct: 146 EDPNPGPPLDEEDED---ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE 202
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
P SP+ ++ P P+ P PT P PPP P P P Q P
Sbjct: 203 DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV---------PP 253
Query: 423 CPRPPPSPTPTTTPAPICYPGSNDPR 448
P+P + + D
Sbjct: 254 LSTAKPTPPSASATPAPIGGITLDDD 279
Score = 50.5 bits (121), Expect = 2e-06
Identities = 29/141 (20%), Positives = 37/141 (26%), Gaps = 15/141 (10%)
Query: 330 RPPPPPPPPT-----TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P P PP TT DP PS P+++P P+
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADP--ASASPSDPPSSSPGVPSFPSPPED 203
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGS 444
+ P + PP P + P + P PP P P P S
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESP--------TNPSPPPGPAAPPPPPVQQVPPLS 255
Query: 445 NDPRCPSPPPTTPRPTTQPPP 465
P TP P
Sbjct: 256 TAKPTPPSASATPAPIGGITL 276
Score = 50.5 bits (121), Expect = 2e-06
Identities = 31/159 (19%), Positives = 33/159 (20%), Gaps = 26/159 (16%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
P P PP S P + P P
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASAS-----------PSDPPSSSPGV 194
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
P P P S P P+ P PT P PPP P
Sbjct: 195 PSFPSPPEDPSSP--------------SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGP 240
Query: 513 -PPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD 550
P P P S P TP P D
Sbjct: 241 AAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDD 279
Score = 50.1 bits (120), Expect = 3e-06
Identities = 28/130 (21%), Positives = 33/130 (25%), Gaps = 7/130 (5%)
Query: 450 PSPPPT-----TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT 504
P PP TT DP P P+ + P P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSD 209
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
PP P + PP +P P PPPP P +P P S S
Sbjct: 210 SSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQ--QVPPLSTAKPTPPSASAT 267
Query: 565 VCYPGSPDPR 574
G
Sbjct: 268 PAPIGGITLD 277
Score = 49.7 bits (119), Expect = 4e-06
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 272 DDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRP 331
+D TT + P P P PPS +P P + P + P
Sbjct: 157 EDEDADVATTNSDNSFPG---EDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLP 213
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS----------PTPTTTPTTPAP 378
P P + P + P P P P PPP PTP + TPAP
Sbjct: 214 PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAP 270
Score = 47.0 bits (112), Expect = 3e-05
Identities = 26/138 (18%), Positives = 38/138 (27%), Gaps = 19/138 (13%)
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTP 539
T + P+ PP P P+ P+PP +D + P
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDS-------SLP 213
Query: 540 PPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRP 599
P P + P P + PP P P PP T + P P
Sbjct: 214 PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK------------PTP 261
Query: 600 PPTTQETYVCYPGSIDPR 617
P + ++D
Sbjct: 262 PSASATPAPIGGITLDDD 279
Score = 44.7 bits (106), Expect = 1e-04
Identities = 22/99 (22%), Positives = 26/99 (26%), Gaps = 2/99 (2%)
Query: 282 PRPTTQPPPICYPGSPD--PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ PP PG P P + PAP + P P P P PPP
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPG 239
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
P P P S P + T
Sbjct: 240 PAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278
Score = 41.6 bits (98), Expect = 0.001
Identities = 29/129 (22%), Positives = 36/129 (27%), Gaps = 13/129 (10%)
Query: 371 TTPTTPAPLVCYPGSNDPRCPTRPPPPPP-----PPTTPRPTTQPPPICYPGSPD-PRCP 424
P PL D + PP PG P P P
Sbjct: 146 EDPNPGPPL----DEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPP 201
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRC---PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
P SP+ ++ P S+ P P+ P PPP P +P P
Sbjct: 202 EDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTP 261
Query: 482 SPTPTTPAP 490
TPAP
Sbjct: 262 PSASATPAP 270
Score = 38.9 bits (91), Expect = 0.009
Identities = 29/147 (19%), Positives = 36/147 (24%), Gaps = 15/147 (10%)
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDP 594
P PP L D +S + P P P + V S
Sbjct: 147 DPNPGPP----LDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE 202
Query: 595 RCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCY 654
P ++ S P P PSP P P P PP + PT
Sbjct: 203 DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT-- 260
Query: 655 PGSPDPRCRPSVPPPTSQPFIPVGLTP 681
P T P + L
Sbjct: 261 ---------PPSASATPAPIGGITLDD 278
Score = 34.3 bits (79), Expect = 0.26
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ P+ PP D PP + + P +P P P PPPPP
Sbjct: 191 SPGVPSFPSPPEDPSSPSDS--SLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV 248
Query: 340 ---TPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 370
P T +P P P P T
Sbjct: 249 QQVPPLSTAKPTP-----PSASATPAPIGGITLD 277
Score = 33.9 bits (78), Expect = 0.29
Identities = 24/137 (17%), Positives = 31/137 (22%), Gaps = 11/137 (8%)
Query: 577 RPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGS 636
P+P P D + ++ P P P
Sbjct: 146 EDPNPGPP----LDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPP 201
Query: 637 PDPRCPRPPSPSPTPTCYPGSPDPRC------RPSVPPPTSQPFIPVGLTPFVCTCNVTT 690
DP P S P P+ S P PS PP + P P + T
Sbjct: 202 EDPSSPSDSSLPPAPS-SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT 260
Query: 691 PRPIPPPLCYPGSTDPR 707
P G
Sbjct: 261 PPSASATPAPIGGITLD 277
Score = 33.9 bits (78), Expect = 0.34
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P+ P+PP+ D P P S + PP +P P P +P P Q
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251
Query: 890 YPGS 893
P S
Sbjct: 252 PPLS 255
Score = 32.7 bits (75), Expect = 0.88
Identities = 15/78 (19%), Positives = 24/78 (30%)
Query: 819 DDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPP 878
+D+ + + SP P P+ P+PP+ D P P
Sbjct: 157 EDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAP 216
Query: 879 LSPTTPAPPQCYPGSPDP 896
S + PP +P
Sbjct: 217 SSFQSDTPPPSPESPTNP 234
Score = 32.0 bits (73), Expect = 1.3
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 1/117 (0%)
Query: 785 NNQKGGLLRTESSSLGKGEVHEALFQLNKELGLTDDKKEFAHFYRTPSPTTPAPPQCYPG 844
K G L + + + N + + + A + P++ +P
Sbjct: 140 KALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPS 199
Query: 845 SP-DPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDPWSQN 900
P DP P P P+ Q P P P P P PA P P P
Sbjct: 200 PPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLST 256
Score = 31.6 bits (72), Expect = 1.9
Identities = 18/70 (25%), Positives = 25/70 (35%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+ SP P+ P P PP+P++ P P P PP P P PP
Sbjct: 189 SSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV 248
Query: 890 YPGSPDPWSQ 899
P ++
Sbjct: 249 QQVPPLSTAK 258
Score = 30.8 bits (70), Expect = 2.7
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 826 HFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPA 885
+ P P S P P+ +P PP P P PPLS P
Sbjct: 203 DPSSPSDSSLPPAPS-SFQSDTPPPSPESPTNPSP-PPGPAAPPPPPVQQVPPLSTAKPT 260
Query: 886 PPQ 888
PP
Sbjct: 261 PPS 263
Score = 29.7 bits (67), Expect = 7.7
Identities = 15/66 (22%), Positives = 19/66 (28%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
P P+ Q P P P P P PA P P P +P + +
Sbjct: 211 SLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAP 270
Query: 891 PGSPDP 896
G
Sbjct: 271 IGGITL 276
Score = 29.3 bits (66), Expect = 8.7
Identities = 13/59 (22%), Positives = 16/59 (27%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+ P + P P P P APP P P P+ A P
Sbjct: 211 SLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 53.4 bits (129), Expect = 5e-07
Identities = 17/108 (15%), Positives = 20/108 (18%), Gaps = 25/108 (23%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
P + PT A S P P P P P P P+
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP-----------PK 85
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 410
P + P P P P
Sbjct: 86 PAAAAAAAAAPAAPPA--------------AAAAAAPAAAAVEDEVTP 119
Score = 49.9 bits (120), Expect = 7e-06
Identities = 16/102 (15%), Positives = 18/102 (17%), Gaps = 19/102 (18%)
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
P + PT A S P P P P P P P
Sbjct: 37 GPGSTAAPTAAAAAAAA----AASAPAAAPAAKAPAAPAPAPPAAAAPAAPP----KPAA 88
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
P A +P P
Sbjct: 89 AAAAAAAPAAPPAAAAA-----------AAPAAAAVEDEVTP 119
Score = 49.5 bits (119), Expect = 8e-06
Identities = 17/102 (16%), Positives = 20/102 (19%), Gaps = 21/102 (20%)
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
P + PT A + + P P P P P PP P
Sbjct: 37 GPGSTAAPTAAAAA---AAAAASAPAAAPAAKAPAAPAPAP------PAAAAPAAPPKPA 87
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS 526
A PP PA
Sbjct: 88 AAAAAA------------AAPAAPPAAAAAAAPAAAAVEDEV 117
Score = 46.8 bits (112), Expect = 5e-05
Identities = 11/83 (13%), Positives = 12/83 (14%), Gaps = 9/83 (10%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
P P P P+P P P P
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK---------PA 87
Query: 390 CPTRPPPPPPPPTTPRPTTQPPP 412
P P P
Sbjct: 88 AAAAAAAAPAAPPAAAAAAAPAA 110
Score = 44.1 bits (105), Expect = 4e-04
Identities = 9/84 (10%), Positives = 13/84 (15%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
P + + + P PP P
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPL 379
P +P PL
Sbjct: 97 AAPPAAAAAAAPAAAAVEDEVTPL 120
Score = 43.7 bits (104), Expect = 5e-04
Identities = 8/81 (9%), Positives = 10/81 (12%)
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 416
D A + P PP P
Sbjct: 35 DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94
Query: 417 GSPDPRCPRPPPSPTPTTTPA 437
P +P
Sbjct: 95 APAAPPAAAAAAAPAAAAVED 115
Score = 43.0 bits (102), Expect = 7e-04
Identities = 16/91 (17%), Positives = 17/91 (18%), Gaps = 17/91 (18%)
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
P +T PT S P P P P PP
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP------------AAAAPAAPPK 85
Query: 513 PPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P A P P P
Sbjct: 86 PAAAAAAA---AAPAAP--PAAAAAAAPAAA 111
Score = 42.6 bits (101), Expect = 0.001
Identities = 12/95 (12%), Positives = 16/95 (16%), Gaps = 13/95 (13%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
PGS + + P P + P P
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP----------- 86
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P PA + TP
Sbjct: 87 --AAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 42.6 bits (101), Expect = 0.001
Identities = 12/106 (11%), Positives = 16/106 (15%), Gaps = 24/106 (22%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
P P P P P +
Sbjct: 37 GPGSTAAPTAAAAAAAAAAS------APAAAPAAKAPAAPAPAPPA-----------AAA 79
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSS 498
P P+P PP + PA +
Sbjct: 80 PAAPPKPAAAAAA------AAAP-AAPPAAAAAAAPAAAAVEDEVT 118
Score = 42.6 bits (101), Expect = 0.001
Identities = 10/73 (13%), Positives = 14/73 (19%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPR 530
P + A ++ P PP P P P +
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 531 CPRPTPTTPPPPQ 543
P P
Sbjct: 97 AAPPAAAAAAAPA 109
Score = 39.9 bits (94), Expect = 0.006
Identities = 10/70 (14%), Positives = 11/70 (15%), Gaps = 10/70 (14%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P P + P P P P P P P
Sbjct: 48 AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP----------KPAAAAAAAAAPA 97
Query: 340 TPRPTTQPPP 349
P
Sbjct: 98 APPAAAAAAA 107
Score = 38.7 bits (91), Expect = 0.018
Identities = 18/109 (16%), Positives = 26/109 (23%), Gaps = 27/109 (24%)
Query: 478 RPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPT 537
P + PT A P P AP P P P
Sbjct: 37 GPGSTAAPTAAAA-----------AAAAAASAPAAAPAAKAPAA----------PAPAPP 75
Query: 538 TPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYV 586
P + P+ P ++ + P P + P + E
Sbjct: 76 AAAAP-----AAPPK-PAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
Score = 37.9 bits (89), Expect = 0.027
Identities = 10/92 (10%), Positives = 15/92 (16%), Gaps = 11/92 (11%)
Query: 473 DPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP 532
D A ++ P P P PP P
Sbjct: 35 DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP----------P 84
Query: 533 RPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
+P P ++
Sbjct: 85 KPAAAAAAAAAPA-APPAAAAAAAPAAAAVED 115
Score = 36.0 bits (84), Expect = 0.10
Identities = 14/65 (21%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+P AP P P P PP P A P P + PA
Sbjct: 58 PAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA-----AAPAAPPAAAAAAAPAAAA 112
Query: 889 CYPGS 893
Sbjct: 113 VEDEV 117
Score = 36.0 bits (84), Expect = 0.12
Identities = 17/74 (22%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 823 EFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPT 882
EF Y S P + P +P AP P P P P P
Sbjct: 31 EFFADYGPGSTAAPTAA---AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA 87
Query: 883 TPAPPQCYPGSPDP 896
A P +P
Sbjct: 88 AAAAAAAAPAAPPA 101
Score = 35.3 bits (82), Expect = 0.19
Identities = 13/67 (19%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
T +PT A S P P P + P P P + A
Sbjct: 41 TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAP---PAAAAPAAPPKPAAAAAAAAAPA 97
Query: 890 YPGSPDP 896
P +
Sbjct: 98 APPAAAA 104
Score = 34.1 bits (79), Expect = 0.43
Identities = 9/67 (13%), Positives = 13/67 (19%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+ A +P + P P A P P PA
Sbjct: 46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAA 105
Query: 890 YPGSPDP 896
+
Sbjct: 106 AAPAAAA 112
Score = 32.9 bits (76), Expect = 1.1
Identities = 11/84 (13%), Positives = 13/84 (15%), Gaps = 4/84 (4%)
Query: 508 PPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCY 567
P PT A S P P P P P +
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPA----AAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 568 PGSPDPRCPRPPSPTPEYVCYPGS 591
P +
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEV 117
Score = 32.2 bits (74), Expect = 1.7
Identities = 10/80 (12%), Positives = 14/80 (17%), Gaps = 4/80 (5%)
Query: 597 PRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPG 656
PT S P + P PP P+
Sbjct: 40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA----PPAAAAPAAPPKPAAAAAAAAA 95
Query: 657 SPDPRCRPSVPPPTSQPFIP 676
P + P +
Sbjct: 96 PAAPPAAAAAAAPAAAAVED 115
Score = 31.4 bits (72), Expect = 2.5
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+ + PA P P + APP+ + P P + A P
Sbjct: 51 AAAAASAPAAAPAAKAPAAPAPAPPAAAA-PAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 53.2 bits (127), Expect = 7e-07
Identities = 35/181 (19%), Positives = 52/181 (28%), Gaps = 12/181 (6%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P PP + P + + P P+ P +P P P P
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYP--QQSQYAQPAVQY 393
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
+P P P P Y +P+ +P +P P A +
Sbjct: 394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAE--- 450
Query: 448 RCPSPPPTTPRPTTQP-PPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRP 506
P+ T Q P + +P +P P P P + + P RP
Sbjct: 451 --EQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE---PVVEETK-PARP 504
Query: 507 P 507
P
Sbjct: 505 P 505
Score = 52.4 bits (125), Expect = 1e-06
Identities = 46/239 (19%), Positives = 55/239 (23%), Gaps = 23/239 (9%)
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
+P T P P PT P P P T P P P YP P +
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394
Query: 367 PTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 426
P P P P + P P P +P QP P P
Sbjct: 395 -EPLQQPVQPQQPYYAPAAEQP-----AQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQ 448
Query: 427 PPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
T P + P P Q P P P T
Sbjct: 449 AEEQQSTFAPQS-----TYQTEQTYQQPAAQEPLYQQPQPVEQ--QPVVEPEPVVEETKP 501
Query: 487 TPAPLVCYPGSSDPRCPTR----------PPPPPPPPPTTPAPPVCYPGSNDPRCPRPT 535
PL + + R R P P P P + + P
Sbjct: 502 ARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAA 560
Score = 49.3 bits (117), Expect = 1e-05
Identities = 44/242 (18%), Positives = 68/242 (28%), Gaps = 23/242 (9%)
Query: 427 PPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
P + T A + +P +PP + P V + P P+ P +P P
Sbjct: 319 PVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPE 378
Query: 487 TPAPLVCYPGSSDPRC-PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY 545
Y + P + P P P PA + P P P Q
Sbjct: 379 GYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAE------QPAQQPYYAPAPEQPAQQP 432
Query: 546 LGSPDPRCPRPLPSSPSPPVCYPGSPDP------RCPRPPSPTPEYVCYPGSIDPRCPRP 599
+P P P + + +P +P + P Y P
Sbjct: 433 YYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP 492
Query: 600 PPTTQETYVCYP-----GSIDPRCPRPQPP-----QPSPTPLCYPGSPDPRCPRPPSPSP 649
P +ET P ++ + R + QP P P+ P P +
Sbjct: 493 EPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAV 552
Query: 650 TP 651
P
Sbjct: 553 PP 554
Score = 44.3 bits (104), Expect = 3e-04
Identities = 34/219 (15%), Positives = 49/219 (22%), Gaps = 35/219 (15%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
+ + P + + P P+ P +P P P Y P P
Sbjct: 346 VASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQ 405
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTT---------PTTPAPLVCYPGSNDPR 389
P + P +P P P P P +
Sbjct: 406 PYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPIC--YPGSPDPRCPRPP-------------------- 427
+ P P + P+ P + + RPP
Sbjct: 466 QTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAA 525
Query: 428 ---PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
P P P P PI P + PP P
Sbjct: 526 WYQPIPEPVKEPEPI-KSSLKAPSVAAVPPVEAAAAVSP 563
Score = 43.1 bits (101), Expect = 8e-04
Identities = 27/176 (15%), Positives = 37/176 (21%), Gaps = 16/176 (9%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT-TPAPICYPGSNDPRC 449
P P PP + P + + P P+ P +P P +
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNE 395
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P P P+ P P P P AP P + +
Sbjct: 396 PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST 455
Query: 510 PPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPV 565
P T P P + P P V
Sbjct: 456 FAPQST-----------YQTEQTYQQPAAQEPLY----QQPQPVEQQPVVEPEPVV 496
Score = 38.5 bits (89), Expect = 0.021
Identities = 43/223 (19%), Positives = 68/223 (30%), Gaps = 19/223 (8%)
Query: 549 PDPRCPRPLPSSPSPPVCYPGSPDPRCPRPP-SPTPE-YVCYPGSIDPRCPRPPPTTQET 606
P P V + P P+ P +P PE Y P P Q
Sbjct: 342 QTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401
Query: 607 YVCYPGSIDPRCPRPQPPQPSPTPLCY------------PGSPDPRCPRPPSPSPTPTCY 654
P Q P +P P P + + + P
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQST 461
Query: 655 PGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTP-RPIPPPLCYPGSTDPRCPREEI 713
+ +P+ P Q PV P V V +P PPL Y + + RE
Sbjct: 462 YQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARER- 520
Query: 714 YPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLPDSAS 756
+Q+ ++ P + P+P++ S +PP+ +A+
Sbjct: 521 ---EQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAA 560
Score = 37.4 bits (86), Expect = 0.041
Identities = 26/172 (15%), Positives = 43/172 (25%), Gaps = 13/172 (7%)
Query: 588 YPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPS--PTPLCYPGSPDPRCPRPP 645
+ ++P PP + + P P PQ +P P P YP P
Sbjct: 333 WAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQ 392
Query: 646 SPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTD 705
P + P + P P P P P P + +
Sbjct: 393 YNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP------AQQPYYAPAPE-QPVAGN 445
Query: 706 PRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLPDSASE 757
E+ ++ + +P +Q + P E
Sbjct: 446 AWQAEEQQSTFAPQSTYQTEQTY----QQPAAQEPLYQQPQPVEQQPVVEPE 493
Score = 37.4 bits (86), Expect = 0.047
Identities = 33/133 (24%), Positives = 41/133 (30%), Gaps = 10/133 (7%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSP---TPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
P Q P P+ P P Y P P P P
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP-RCPTRPPPP 397
P+P Q P P +P P+ +P P T PL+ G + P PT P P
Sbjct: 811 VAPQPQYQQPQ--QPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPS 868
Query: 398 ----PPPPTTPRP 406
PPP+ P
Sbjct: 869 LDLLTPPPSEVEP 881
Score = 37.4 bits (86), Expect = 0.048
Identities = 36/135 (26%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P + P P P Q P P P+ P P P P+
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ-- 808
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP--TTPAPLVCYPGSSDP-RCPTRPP 507
P P+P Q P P + P+ P +P P T PL+ G S P PT P
Sbjct: 809 --QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPL 866
Query: 508 PP-----PPPPPTTP 517
P PPP P
Sbjct: 867 PSLDLLTPPPSEVEP 881
Score = 35.1 bits (80), Expect = 0.22
Identities = 28/121 (23%), Positives = 36/121 (29%)
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
P P Q P P+ P P P+ P P+ P P P
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 513 PPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPD 572
P AP Y P P+P P P P + + S P+ P +P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPL 866
Query: 573 P 573
P
Sbjct: 867 P 867
Score = 35.1 bits (80), Expect = 0.23
Identities = 30/168 (17%), Positives = 42/168 (25%), Gaps = 3/168 (1%)
Query: 271 WDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTR 330
+ P + P +P P P P P + + T
Sbjct: 397 LQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF 456
Query: 331 PPPP--PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
P T +P Q P P + + P T P P PL + +
Sbjct: 457 APQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARP-PLYYFEEVEEK 515
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
R R P P +P PI PP +P
Sbjct: 516 RAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563
Score = 34.7 bits (79), Expect = 0.28
Identities = 31/127 (24%), Positives = 39/127 (30%), Gaps = 4/127 (3%)
Query: 437 APICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP--DPRCPRPPPSPTPTTPAPLVCY 494
P+ P + P P + QP P P+ P P P+
Sbjct: 742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 801
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDP--R 552
P P+ P P P P AP Y P P+P T P G P +
Sbjct: 802 PQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHK 861
Query: 553 CPRPLPS 559
PLPS
Sbjct: 862 PTTPLPS 868
Score = 32.0 bits (72), Expect = 2.0
Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 589 PGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPS 648
P + P+ P Q+ Y + P+ QP QP Y P P+P
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 649 PTPTCYPGS--PDPRCRPSVPPPTSQPFIPVGLTP 681
P P P+ + P QP PV P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841
Score = 31.6 bits (71), Expect = 2.4
Identities = 35/138 (25%), Positives = 44/138 (31%), Gaps = 11/138 (7%)
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
P P P P P P + P P+P Q P P + P+ P
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVA--PQPQYQQPQQPVAPQPQYQQPQQP 797
Query: 481 PSPTPTTPA---PLVCYPGSSDPRCPTRPPP----PPPPPPTTPAPPVCYP--GSNDPRC 531
+P P P+ P P+ P P P P P P + +P N
Sbjct: 798 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSR 857
Query: 532 PRPTPTTPPPPQCYLGSP 549
P PTTP P L P
Sbjct: 858 PLHKPTTPLPSLDLLTPP 875
Score = 31.6 bits (71), Expect = 2.7
Identities = 30/136 (22%), Positives = 38/136 (27%), Gaps = 5/136 (3%)
Query: 306 PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 365
P TP P + +P P P + QP + P P
Sbjct: 743 PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 802
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
P P P P P P P P+ T P + G D R
Sbjct: 803 QYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNG--DSRPLH 860
Query: 426 PPPSPTPT---TTPAP 438
P +P P+ TP P
Sbjct: 861 KPTTPLPSLDLLTPPP 876
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 52.2 bits (125), Expect = 9e-07
Identities = 65/276 (23%), Positives = 82/276 (29%), Gaps = 15/276 (5%)
Query: 313 TPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTT 372
T AP+ + P++ PP P P P +P P PP P
Sbjct: 309 TTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVV- 367
Query: 373 PTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPT---TQPPPICYPGSPDPRCPRPPPS 429
P PL Y D + PT P P PP + P P P P
Sbjct: 368 ---PRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPE 424
Query: 430 PTPTTTPAPICYPGSNDPRCPS-PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
P A P S R PPT+P PT P V S P P + T
Sbjct: 425 VEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTA-PTGVSPSVSSTSSVPAVPDTAPATAA 483
Query: 489 APLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGS 548
P ++ PPT+P+P P L
Sbjct: 484 TDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALAD 543
Query: 549 PDPRC-PRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P+P P SP Y D + P P+P+P
Sbjct: 544 EQHHAQPKPRPLSP-----YTMYEDLKPPTSPTPSP 574
Score = 47.2 bits (112), Expect = 3e-05
Identities = 49/197 (24%), Positives = 57/197 (28%), Gaps = 13/197 (6%)
Query: 303 RPPPSPTPTTTPAPICYPGSND----PRCPTRPPPPPPPPTTP--RPTTQPPPICYPGSP 356
+PP SP PT + S D P P P P P P P SP
Sbjct: 381 KPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP 440
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 416
R P +P+ T T S+ P P P P P+
Sbjct: 441 YARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPY 500
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP---TTQPPPVCYPGSPD 473
D P PSP S PPT QP P P SP
Sbjct: 501 AVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKP--RPLSPY 558
Query: 474 PRCP--RPPPSPTPTTP 488
+PP SPTP+
Sbjct: 559 TMYEDLKPPTSPTPSPV 575
Score = 47.2 bits (112), Expect = 3e-05
Identities = 65/255 (25%), Positives = 77/255 (30%), Gaps = 29/255 (11%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
P R P P P P P PP P PRP + P Y
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLS--PYTAYEDL- 380
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP--RPTTQPPPIC 414
+PP SP PT ++PA P P P P P P
Sbjct: 381 -----KPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKT 435
Query: 415 YPGSPDPRCP--RPP--PSPTPTTTPAPICYPGSNDPRCPSPPPTTP--RPTTQPPPVCY 468
P SP R +PP PSPT T +P S+ P P P T PP
Sbjct: 436 RPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMR 495
Query: 469 PGSPDPRCP--RPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS 526
P SP +PP SP+P P V + APP
Sbjct: 496 PLSPYAVYDDLKPPTSPSPAAPVGKVAPSST-----------NEVVKVGNSAPPTALADE 544
Query: 527 NDPRCPRPTPTTPPP 541
P+P P +P
Sbjct: 545 QHHAQPKPRPLSPYT 559
Score = 47.2 bits (112), Expect = 3e-05
Identities = 54/238 (22%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
P P P +P P PP P Y D + PT P P PP +
Sbjct: 339 PKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASS 398
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPT-----TPAPLVCYPGSNDPRCPTRPPPPP 398
+ P PD S P P PL Y D + PT P P
Sbjct: 399 -KSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTA 457
Query: 399 PPPTTPRPTTQPPPICYPGSPDPRC---PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P +P ++ P + PP Y P PSP
Sbjct: 458 PTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAP 517
Query: 456 TPR--PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
+ P++ V S P P PL Y D + PT P P P
Sbjct: 518 VGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTMYEDLKPPTSPTPSPV 575
Score = 46.8 bits (111), Expect = 4e-05
Identities = 55/263 (20%), Positives = 71/263 (26%), Gaps = 24/263 (9%)
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
+ P++ PP P P P +P P PP P Y D +
Sbjct: 322 KIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLK 381
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
P+ P TP ++ P P PSP + P P
Sbjct: 382 PPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPE------------VEPAQ 429
Query: 509 PPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCP------------RP 556
+P Y P P PT T P S P P P
Sbjct: 430 VEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAP 489
Query: 557 LPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDP 616
P++ P Y D + P PSP S + + T +
Sbjct: 490 PPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQ 549
Query: 617 RCPRPQPPQPSPTPLCYPGSPDP 639
PRP P L P SP P
Sbjct: 550 PKPRPLSPYTMYEDLKPPTSPTP 572
Score = 46.5 bits (110), Expect = 5e-05
Identities = 52/203 (25%), Positives = 63/203 (31%), Gaps = 9/203 (4%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P P P P +P P PP P P PL Y D + PT P P
Sbjct: 330 PKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPT 389
Query: 510 PPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP-PQCYLGSPDPRCPRPLPSSPSPPVCYP 568
PP + V P+P + P+ + + RPL SP Y
Sbjct: 390 PPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPL----SPYARY- 444
Query: 569 GSPDPRCPRPPSPTPEY-VCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPS 627
D + P PSPT V S P P T T + P RP P
Sbjct: 445 --EDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAV 502
Query: 628 PTPLCYPGSPDPRCPRPPSPSPT 650
L P SP P P +
Sbjct: 503 YDDLKPPTSPSPAAPVGKVAPSS 525
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 49.3 bits (117), Expect = 9e-06
Identities = 60/280 (21%), Positives = 73/280 (26%), Gaps = 39/280 (13%)
Query: 306 PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 365
PS PT + P P+ P P P P + RPT P P+ P+ P
Sbjct: 569 PSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPE 628
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
SP P RPPPP P + RP G + P+
Sbjct: 629 SPKS---------------------PKRPPPPQRPSSPERPE---------GPKIIKSPK 658
Query: 426 PPPSPTPTTTPA--PICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
PP SP P P Y D S T + + P +P
Sbjct: 659 PPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTP 718
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P D P P P P TP P P
Sbjct: 719 RPLPPKL------PRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFF-HETPADTPLPD 771
Query: 544 CYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P + P SP +PP P
Sbjct: 772 ILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHP 811
Score = 47.0 bits (111), Expect = 4e-05
Identities = 57/232 (24%), Positives = 67/232 (28%), Gaps = 44/232 (18%)
Query: 298 DPRCPRPPPSP----TPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
DP P+ P P PT +P + P+ P RP P P P P P
Sbjct: 590 DPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPE 649
Query: 354 GSPDPRCPRPPPSPTPTTTPT------------------TPAPLVCYPGSNDPRCPTRPP 395
G + P+PP SP P P T +V T P
Sbjct: 650 GPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPE 709
Query: 396 PPPPPPTTPR------PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 449
P P TTPR P + P G PD P TP P
Sbjct: 710 TPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDA----EQPDDIEFFTP-----PEEERTFF 760
Query: 450 PSPPPTTPRPTTQPPPVCYP------GSPDPRCPRPPPSPTPTTPAPLVCYP 495
P TP P G PD R P SP+ P +P
Sbjct: 761 HETPADTPLPDILAEEFKEEDIHAETGEPDEAMKR-PDSPSEHEDKPPGDHP 811
Score = 47.0 bits (111), Expect = 5e-05
Identities = 70/314 (22%), Positives = 89/314 (28%), Gaps = 58/314 (18%)
Query: 304 PPPSPTPTTTP--APICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
PP P + P AP G ++ P P T + PG +
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPA--KEH 567
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
+P PT + P P P+ P P P P + RPT P P
Sbjct: 568 KPSKIPTLSKKPEFPKD------PKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIP 621
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD-PRCPRPP 480
+ P+ P SP P PPP P +P SP P+ P+PP
Sbjct: 622 KSPKRPESPKSPKRP---------------PPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666
Query: 481 PSP-------------------TPTTPAPLVCYPGSSDPRCP-------TRPPPPPPPPP 514
P T TT + P T P P PP P
Sbjct: 667 FDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLP 726
Query: 515 TTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYP------ 568
P G D P PP + + PLP +
Sbjct: 727 RDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAET 786
Query: 569 GSPDPRCPRPPSPT 582
G PD RP SP+
Sbjct: 787 GEPDEAMKRPDSPS 800
Score = 40.1 bits (93), Expect = 0.006
Identities = 63/283 (22%), Positives = 78/283 (27%), Gaps = 38/283 (13%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P P PP P S + P+ P T PG P
Sbjct: 511 PEGPEASGLPPKAPGDKEGEEGEHED-SKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
S PT + P +P DP P+ P P + PTRP P
Sbjct: 570 SKIPTLSKKPEFPKDPKHP--KDPEEPKKPKRPR--------------SAQRPTRPKSPK 613
Query: 511 PPPPTT-PAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPG 569
P P P P+ P P P P P+ G + P+P P SP PP
Sbjct: 614 LPELLDIPKSPKRPESPKSPKRP-PPPQRPSSPERPEGPKIIKSPKP-PKSPKPPF---- 667
Query: 570 SPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPT 629
P + Y +D T SI P P T
Sbjct: 668 ----------DPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTT 717
Query: 630 PLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQ 672
P P P+ PR P P + P PP +
Sbjct: 718 PRPLP----PKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEE 756
Score = 37.4 bits (86), Expect = 0.046
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 829 RTPSPTTPAP---PQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPA 885
R SP P P+ P+ P+ PP P P+ P+ G + P+PP SP P
Sbjct: 608 RPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPF 667
Query: 886 PPQ 888
P+
Sbjct: 668 DPK 670
Score = 33.5 bits (76), Expect = 0.60
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 833 PTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPG 892
P P P+ PR + P P +P P+ P+ P P SP P PPQ P
Sbjct: 585 PKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQ-RPS 643
Query: 893 SPD 895
SP+
Sbjct: 644 SPE 646
Score = 33.1 bits (75), Expect = 0.88
Identities = 53/282 (18%), Positives = 77/282 (27%), Gaps = 28/282 (9%)
Query: 571 PDPRCPRPPSPTPEYVCYP-GSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPT 629
P P PS P P DP+ P+ P ++ R P+ P+
Sbjct: 561 PGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDI 620
Query: 630 PLCYPGSPDPRCPRPPSPSPTPTC--YPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCN 687
P P+ P+ P P P+ P P P P PF P F
Sbjct: 621 PKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYL 680
Query: 688 VTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQPETY 747
+ +E P F P + P+ P F+P
Sbjct: 681 DAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPK--LPRDEEFPFEP--- 735
Query: 748 LPPLPDSASEYSIKRDVGLNCHPGSNDPKCNEISIPPNNQKGGLLRTESSSLGKGEVHEA 807
PD+ P E PP ++ T + + + E
Sbjct: 736 -IGDPDAEQ------------------PDDIEFFTPPEEERTFFHETPADTPLPDILAE- 775
Query: 808 LFQLNKELGLTDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPR 849
F+ T + E +PS PP +P P R
Sbjct: 776 EFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKR 817
Score = 32.4 bits (73), Expect = 1.4
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 829 RTPS-PTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
R+ PT P P+ P+ P+ P SP +P P P P P +P PP
Sbjct: 601 RSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPP 660
Query: 888 QCYPGSPDP 896
+ DP
Sbjct: 661 KSPKPPFDP 669
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 47.6 bits (114), Expect = 2e-05
Identities = 26/167 (15%), Positives = 36/167 (21%), Gaps = 24/167 (14%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
P P P P P + + P PP P P P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA-------------- 406
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP-PPPPTTPRPTTQPPPICYPG 417
P +P TT L + T+ P + RP
Sbjct: 407 ----PQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALE----- 457
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP 464
P P + +N P TP+ +
Sbjct: 458 RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKAL 504
Score = 46.4 bits (111), Expect = 5e-05
Identities = 30/162 (18%), Positives = 39/162 (24%), Gaps = 27/162 (16%)
Query: 362 RP-PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP--PPPPTTPRPTTQPPPICYPGS 418
P P P P P + AP + P PP PPP P P +
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 419 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
R T A ++P + RP S R
Sbjct: 420 SQLLAARQQLQRAQGATKAK-----KSEP----AAASRARPVN---------SALERLAS 461
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
P+P+ AP + P A P
Sbjct: 462 VRPAPSALEKAPA------KKEAYRWKATNPVEVKKEPVATP 497
Score = 44.9 bits (107), Expect = 2e-04
Identities = 31/157 (19%), Positives = 45/157 (28%), Gaps = 20/157 (12%)
Query: 474 PRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPR 533
P P P P P + AP ++ P PP P PP + P P P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420
Query: 534 PTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSID 593
Q G+ + P +S + PV + + P+P+
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPV--NSALERLASVRPAPSA---------- 468
Query: 594 PRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTP 630
P +E Y P +P TP
Sbjct: 469 ---LEKAPAKKEAYR-----WKATNPVEVKKEPVATP 497
Score = 43.7 bits (104), Expect = 5e-04
Identities = 21/150 (14%), Positives = 33/150 (22%), Gaps = 9/150 (6%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
P P P P P + P + P +P P P ++ P
Sbjct: 360 HPAAPLPEPEVPPQSAAPAAS----AQATAAPTAAVAPPQAPAVPP---PPASAP--QQA 410
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
P TT + P + + + RP P
Sbjct: 411 PAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE 470
Query: 513 PPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
+ +N + TP
Sbjct: 471 KAPAKKEAYRWKATNPVEVKKEPVATPKAL 500
Score = 43.3 bits (103), Expect = 6e-04
Identities = 22/158 (13%), Positives = 36/158 (22%), Gaps = 5/158 (3%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P P + + + +PT P P + P P P TT
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420
Query: 342 RPTTQPPPI-CYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
+ + G+ + P + + L S P P
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLA----SVRPAPSALEKAPAKK 476
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
T P + P+ + T A
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
Score = 35.6 bits (83), Expect = 0.12
Identities = 18/141 (12%), Positives = 29/141 (20%), Gaps = 14/141 (9%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
P PP P P+ P+ T + + R P
Sbjct: 386 APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAA 445
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
+P S R P+P+ R P
Sbjct: 446 A-SRARPVN-----SALERLASVRPAPSALEKAPAKKE--------AYRWKATNPVEVKK 491
Query: 401 PTTPRPTTQPPPICYPGSPDP 421
P + + +P+
Sbjct: 492 EPVATPKALKKALEHEKTPEL 512
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 47.1 bits (112), Expect = 4e-05
Identities = 63/264 (23%), Positives = 71/264 (26%), Gaps = 38/264 (14%)
Query: 304 PPPSPTPTTTPAPIC--YPGSNDPRCPTRPPPPP-----PPPTTPRPTTQPPPICYPGSP 356
T+T +P Y S DP P P P P+P P
Sbjct: 90 DSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQ------ 143
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSND--PRCPTRPPPPPPPPTTPRPTTQPPPIC 414
P TP + + P+ P P P PR P
Sbjct: 144 -------PQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ--AAFPQQ 194
Query: 415 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDP 474
P P P+PP P S P P PP P QPPP+ P P
Sbjct: 195 GPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLP---QQPPPLQQPQFPGL 251
Query: 475 RCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRP 534
PPP P P P P PPP P P P G N P P
Sbjct: 252 SQQMPPPPPQPP--------QQQQQPPQPQAQPPPQNQPTPHPGLPQ---GQNAPLPPPQ 300
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLP 558
P P Q G R
Sbjct: 301 QPQLLPLVQQPQGQQRGPQFREQL 324
Score = 45.1 bits (107), Expect = 2e-04
Identities = 34/163 (20%), Positives = 45/163 (27%), Gaps = 11/163 (6%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
P PP P+ P + P P P P + P + P
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231
Query: 392 TRPPPPPPPPTTPRPTT------QPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSN 445
P P PP +P PPP P + P+P P P P P PG
Sbjct: 232 LPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPH--PGLP 289
Query: 446 DPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
+ PP Q P+ R P+ +
Sbjct: 290 QGQNAPLPPPQQP---QLLPLVQQPQGQQRGPQFREQLVQLSQ 329
Score = 40.1 bits (94), Expect = 0.006
Identities = 55/284 (19%), Positives = 68/284 (23%), Gaps = 38/284 (13%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
N P + T P Y S DP P P P+ T P P
Sbjct: 75 VRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPE-YIPDLQPDPSLWGTAPKP- 132
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
+P+ P P P P T + + + P+ P P
Sbjct: 133 -------EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQ--- 182
Query: 440 CYPGSNDPRCPSPPPTTPRPTTQPPPV--CYPGSPDPRCPRPPPSPTPTTPAPLVCYPGS 497
PP P PP YP P + P P S
Sbjct: 183 ----------GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAP--------S 224
Query: 498 SDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPL 557
P P PP P PP P P P P P P P+
Sbjct: 225 QAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQ--NQP 282
Query: 558 PSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPP 601
P P + P+ P P R P+
Sbjct: 283 TPHPGLP--QGQNAPLPPPQQPQLLPLVQ--QPQGQQRGPQFRE 322
Score = 39.8 bits (93), Expect = 0.007
Identities = 47/232 (20%), Positives = 62/232 (26%), Gaps = 20/232 (8%)
Query: 445 NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT 504
P + + +T P C G P P P L +P+ P
Sbjct: 83 GAPSVGPDSDLSQKTSTFSP--CQSGYEASTDPEYIPDLQPD--PSLWGTAPKPEPQPPQ 138
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
P P P + + P P PPQ L P P + P
Sbjct: 139 APESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMP------PRQAAFP 192
Query: 565 VCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPP 624
P P P+PP PE V P P + P+ PP
Sbjct: 193 QQGPPEQPPGYPQPPQGHPEQVQPQQF-----LPAPSQAPAQPP-LPPQL----PQQPPP 242
Query: 625 QPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIP 676
P P P+PP P P P+ +P+ P Q
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNA 294
Score = 34.4 bits (79), Expect = 0.31
Identities = 26/131 (19%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTR--PPPPPPPP 338
P P + P P P P ++ PPPPP PP
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 339 T----TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRP 394
P+P QPPP P P P P P +P
Sbjct: 264 QQQQQPPQPQAQPPPQ--------NQPTPHPGLPQGQNAPLPPP----QQPQLLPLVQQP 311
Query: 395 PPPPPPPTTPR 405
P
Sbjct: 312 QGQQRGPQFRE 322
Score = 31.3 bits (71), Expect = 2.5
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Query: 804 VHEALFQLNKELGLTDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPP 863
+ K L L + + + + P P G P + P P P P
Sbjct: 143 QPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP--PEQP 200
Query: 864 QCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDP 896
YP P + PAP Q P P
Sbjct: 201 PGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLP 233
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 46.5 bits (110), Expect = 6e-05
Identities = 59/257 (22%), Positives = 71/257 (27%), Gaps = 26/257 (10%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
R + P P P PPP P +TPA R P
Sbjct: 423 RLLSSRQPPGAPAPRRDNDPPPPPRARPGSTPA--------CARRARAQRARDAGPEYVD 474
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
P + +P P P T T P + T P PP
Sbjct: 475 PLGALRRLPAGAAPPPEPAAAPSPATYYTRMGGGPPR---LPPRNRATETLRPDWGPPAA 531
Query: 403 TPRPTTQPPPICYP---------GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P P P P G+ P +P P P S +P P
Sbjct: 532 AP-PEQMEDPYLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIP 590
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGS---SDPRCPTRPPPPP 510
TPR P P G+ +P P SP P+ + S S P PPP P
Sbjct: 591 --TPRVYQNPLPRPMEGAGEPPDLDAPTSPWVEEENPIYGWGDSPLFSPPPAARFPPPDP 648
Query: 511 PPPPTTPAPPVCYPGSN 527
P PA P P
Sbjct: 649 ALSPEPPALPAHRPRPG 665
Score = 37.2 bits (86), Expect = 0.043
Identities = 28/113 (24%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCP 554
PG+ PR PPPPP P + P C + R P P P P
Sbjct: 431 PGAPAPRRDNDPPPPPRARPGST--PACARRARAQRARDAGPEYVDPLGALRRLPAGAAP 488
Query: 555 RPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETY 607
P P++ P Y PR P P PP ++ Y
Sbjct: 489 PPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPY 541
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 46.3 bits (110), Expect = 7e-05
Identities = 25/124 (20%), Positives = 28/124 (22%), Gaps = 2/124 (1%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
T PRP P P PP PTP P D
Sbjct: 64 GGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVP-PGGFRGASSPRLGADST 122
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 449
P R P P + S + RPPPS + YP
Sbjct: 123 SP-RFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHK 181
Query: 450 PSPP 453
Sbjct: 182 THKR 185
Score = 43.6 bits (103), Expect = 4e-04
Identities = 33/231 (14%), Positives = 40/231 (17%), Gaps = 29/231 (12%)
Query: 319 YPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
R T T++ PR +T T P P
Sbjct: 18 DESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRP 77
Query: 379 LVCYP-GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA 437
+ P PP PT P D PR A
Sbjct: 78 PRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILA 137
Query: 438 PICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT---------- 487
PI S+ S RP G +
Sbjct: 138 PIGESNSSSEE-LSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLTKKAA 196
Query: 488 ---PAPLVCYPGS--------------SDPRCPTRPPPPPPPPPTTPAPPV 521
V P D P P PP+
Sbjct: 197 RKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETDPATRQVPVPVHVLYPPL 247
Score = 40.9 bits (96), Expect = 0.003
Identities = 27/128 (21%), Positives = 28/128 (21%), Gaps = 18/128 (14%)
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
P S PRPP P T P S P PP P P PP
Sbjct: 54 LYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKP------DSLPASRELPPGPTPVPPG 107
Query: 516 TPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRC 575
D PR P P S S +
Sbjct: 108 GFRGASSPRLGADSTSPRFLYQVNFPVI------------LAPIGESNSSSEELSEEEEH 155
Query: 576 PRPPSPTP 583
RPP
Sbjct: 156 SRPPPSES 163
Score = 40.5 bits (95), Expect = 0.004
Identities = 20/118 (16%), Positives = 25/118 (21%), Gaps = 5/118 (4%)
Query: 556 PLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSID 615
P S PRPP + + P S P PP
Sbjct: 55 YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDS-LPASRELPPGPTPVPPGGFRGAS 113
Query: 616 PRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
PR SP P P S + + + RP
Sbjct: 114 --SPRLGADSTSPRF--LYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVK 167
Score = 39.0 bits (91), Expect = 0.012
Identities = 23/143 (16%), Positives = 28/143 (19%), Gaps = 18/143 (12%)
Query: 287 QPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQ 346
G P P + P PP PT P
Sbjct: 57 PRETGSGGGVATSTIYTVPRPPRGPE-------QTLDKPDSLPASRELPPGPTPVPPGGF 109
Query: 347 PPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS----NDPRCPTRPPPPPPPPT 402
D PR P AP+ S ++ +RPPP
Sbjct: 110 RGASSPRLGADSTSPRFLYQVNF---PVILAPIGESNSSSEELSEEEEHSRPPPSESLKV 166
Query: 403 TPRPTTQPPPICYPGSPDPRCPR 425
P S R
Sbjct: 167 KNGGKVYPKGF----SKHKTHKR 185
Score = 37.0 bits (86), Expect = 0.043
Identities = 18/131 (13%), Positives = 26/131 (19%), Gaps = 4/131 (3%)
Query: 435 TPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCY 494
G + P PR Q P P P
Sbjct: 57 PRETGSGGGVATSTIYTVP-RPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSP 115
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD-PRC 553
+D P P AP S++ + PPP +
Sbjct: 116 RLGADSTSPR--FLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVY 173
Query: 554 PRPLPSSPSPP 564
P+ +
Sbjct: 174 PKGFSKHKTHK 184
Score = 32.4 bits (74), Expect = 1.4
Identities = 24/145 (16%), Positives = 27/145 (18%), Gaps = 22/145 (15%)
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSP 571
TP S D P T +P P P P
Sbjct: 34 DDFLTPLGSTSEATSEDDDDLYPPRETGSGGG-----VATSTIYTVPRPPRGPEQTLDKP 88
Query: 572 DPRC---PRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSP 628
D PP PTP T S P +P
Sbjct: 89 DSLPASRELPPGPTPVPPGGFRGASSPRLGADST----------SPRFLYQVNFPVILAP 138
Query: 629 TPLCYPGSP----DPRCPRPPSPSP 649
S + RPP
Sbjct: 139 IGESNSSSEELSEEEEHSRPPPSES 163
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 45.8 bits (108), Expect = 1e-04
Identities = 87/380 (22%), Positives = 117/380 (30%), Gaps = 42/380 (11%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS 385
R R PP P+ P PP+ P S PR P + P + P
Sbjct: 545 RRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCK 604
Query: 386 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY---- 441
+ P P P PP++ P P + + + T P P +
Sbjct: 605 DGP--PASGPHEKQPPSS-APRDMAPSVVRMFLRERLLEQS-------TGPKPKSFWEMR 654
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD----PRCPRPPPSP---------TPTTP 488
G + P + +P TQ P P P P +PT P
Sbjct: 655 AGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQP 714
Query: 489 APLVCYPGSSDPRCPT--RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC-Y 545
P DP P P PPP+ AP + + P P P PPQ Y
Sbjct: 715 ISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPY 774
Query: 546 LGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPR------PPSPTPEYVCYPGSIDPRCPRP 599
LG +P+ + S P P + PR S P + G PR P
Sbjct: 775 LGYQEPQAQG-VQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAPRPPHL 833
Query: 600 PPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPD 659
PP + G + + Q P S P+ P + + SP
Sbjct: 834 PP----QWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAPSWSSPQ 889
Query: 660 PRCRPSVPPPTSQPFIPVGL 679
PR P P PT P P+ L
Sbjct: 890 PRA-PIRPIPTRFPPPPMPL 908
Score = 45.0 bits (106), Expect = 2e-04
Identities = 87/412 (21%), Positives = 110/412 (26%), Gaps = 34/412 (8%)
Query: 276 GLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPP 335
G + + R PP P P PP P+T P + P + P PP
Sbjct: 539 GFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTG----PRDMAPPS 594
Query: 336 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC----- 390
P PP P P P L+ P+
Sbjct: 595 TGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMR 654
Query: 391 --PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
P + +P TQ P S P P P+ + S P
Sbjct: 655 AGRDGSGIQQEPSSRRQPATQSTPPR--PSWLPSVFVLPSVDAGRAQPSEESHLSSMSPT 712
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP---TTPAPLVCYPGSSDPRCPTR 505
P PR P+ PD P +P A YPG +PR P
Sbjct: 713 QPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQA 772
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPV 565
P P YPG P R PR P
Sbjct: 773 PYLGYQEPQAQGVQVSSYPGYAGPWGLRAQ--------------HPRYRHSWAYWSQYPG 818
Query: 566 CYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPG-SIDPRCPRPQPP 624
+ P PRPP P++ G + + P ET S P+ P Q
Sbjct: 819 -HGHPQGPWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTL 877
Query: 625 QPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIP 676
S P SP PR P P P+ P D T+ P +P
Sbjct: 878 VSSSAPSW--SSPQPRAPIRPIPTRFPPPPMPLQDSMAVGCDSSGTACPSMP 927
Score = 39.7 bits (92), Expect = 0.008
Identities = 101/460 (21%), Positives = 126/460 (27%), Gaps = 96/460 (20%)
Query: 300 RCPRPPPSPTPTTTPAP----ICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
R PR P PTP T P S++ P P P P +P +
Sbjct: 414 RKPRTLPWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEH 473
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGS-----------------------NDPRCPT 392
+PP SP P P G+ P P
Sbjct: 474 TTVILHQPPQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVETTEEEESVTQPAKPH 533
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
R + R PP P P PP P+T P + S PR +P
Sbjct: 534 RKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGP-RVMATPSTGPRDMAP 592
Query: 453 PPTTPR--------PTTQPPPVCYPGSPDPRCPRPPPS---------PTPTTPAPLVCYP 495
P T PR P P P S PR P T P P +
Sbjct: 593 PSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWE 652
Query: 496 GSSDPRCPTRPPPP---------PPPPPTTPAPPVCYPGSNDPRCPRP---------TPT 537
+ P PP + P V S D +P +PT
Sbjct: 653 MRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPT 712
Query: 538 TPPPPQCYLGSPDPRCPRPLPSS------PSPPVCYPGSPDPRCPRPPSPTPEYVCYPGS 591
P + DP P L PS Y G +P+ + P YPG
Sbjct: 713 QPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAP--------YPGY 764
Query: 592 IDPRCP-------RPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSP------D 638
+PR P + P YPG P R Q P+ + + P
Sbjct: 765 WEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQG 824
Query: 639 PRCPRPPSPSPTPTCYPG------SPDPRCRPSVPPPTSQ 672
P PRPP P G S P + PP Q
Sbjct: 825 PWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQ 864
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 44.7 bits (106), Expect = 1e-04
Identities = 26/143 (18%), Positives = 28/143 (19%), Gaps = 5/143 (3%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P P PPP P P P TPT +P P +
Sbjct: 48 PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAA-NPPATFALPAG 106
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA----PICYPG 443
P PT P P P R
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ 166
Query: 444 SNDPRCPSPPPTTPRPTTQPPPV 466
S S P T P
Sbjct: 167 SAQKNDESQLQQQPNGETPPQQT 189
Score = 32.4 bits (74), Expect = 1.0
Identities = 24/149 (16%), Positives = 27/149 (18%), Gaps = 36/149 (24%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY-----PGSN 445
P P P PPP P P P P P +N
Sbjct: 48 PWDPSPQAPPPVAQLPQPLPQP-----------PPTQALQALPAGDQQQHNTPTGSPAAN 96
Query: 446 DPRCPSPPPTTPRPTTQPPP---------------VCYPGSPDPRCPRPPPSPTPTTPAP 490
P + P PT Q P P R A
Sbjct: 97 PPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGA- 155
Query: 491 LVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
P S + P
Sbjct: 156 ----PASGQLPSQQQSAQKNDESQLQQQP 180
Score = 32.4 bits (74), Expect = 1.0
Identities = 21/141 (14%), Positives = 26/141 (18%), Gaps = 10/141 (7%)
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
DP +PPP P P P TPT + P
Sbjct: 47 FPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALP-- 104
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P P P P + P + P+S
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPVMVTQN----PANSPLDQPAQQRALQQLQQRYGAPASGQ 160
Query: 563 PPVCYPGSPDPRCPRPPSPTP 583
P S
Sbjct: 161 LPS----QQQSAQKNDESQLQ 177
Score = 30.9 bits (70), Expect = 2.8
Identities = 20/143 (13%), Positives = 26/143 (18%), Gaps = 16/143 (11%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY--PGSNDPRCPTRPPPPPPPP 338
P+ Q PP P P + + P + P P P
Sbjct: 48 PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANP--PATFALPA 105
Query: 339 TTPRPTTQPPPIC------------YPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSN 386
PT Q P P + P + P
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQ 409
P P Q
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQ 188
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 44.6 bits (106), Expect = 1e-04
Identities = 26/142 (18%), Positives = 31/142 (21%), Gaps = 16/142 (11%)
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTT 461
P P+ PP + P + P +P P P P
Sbjct: 69 HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
P P P P P P P P PA PV
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAP--------------APQPVHSAPQPAQQAFQPAEPV 174
Query: 522 CYPGSNDPRCPRPTPTTPPPPQ 543
P P P P +
Sbjct: 175 AAPQPEPV--AEPAPVMDKPKR 194
Score = 43.5 bits (103), Expect = 3e-04
Identities = 27/108 (25%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICY---PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P PP PR Q PP +P P P P P P P PL
Sbjct: 88 PQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPL---QQ 144
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 432
P+ P P P + QP P+P P P
Sbjct: 145 PVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192
Score = 42.7 bits (101), Expect = 6e-04
Identities = 29/131 (22%), Positives = 35/131 (26%), Gaps = 24/131 (18%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P PP PR Q PP + P P +P P + P+
Sbjct: 88 PQHQYQPPYASAQPRQPVQQPP----EAQVP----PQHAPRPAQPAPQPVQQPAYQPQPE 139
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P P P P P P P+ PA V P +P P
Sbjct: 140 QPLQQPVSPQVAPAP-------QPVHSAPQPAQQAFQPAEPVAAP---------QPEPVA 183
Query: 511 PPPPTTPAPPV 521
P P P
Sbjct: 184 EPAPVMDKPKR 194
Score = 36.2 bits (84), Expect = 0.061
Identities = 29/137 (21%), Positives = 34/137 (24%), Gaps = 12/137 (8%)
Query: 504 TRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSP 563
R P A P P P P PRP +P P
Sbjct: 69 HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128
Query: 564 PVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQP 623
P P P +P+ P P P P Q + P P
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAP---QPVHSAPQPAQQ--------AFQPAEPVAA- 176
Query: 624 PQPSPTPLCYPGSPDPR 640
PQP P P P+
Sbjct: 177 PQPEPVAEPAPVMDKPK 193
Score = 35.8 bits (83), Expect = 0.098
Identities = 27/143 (18%), Positives = 38/143 (26%), Gaps = 15/143 (10%)
Query: 272 DDGKG-LKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTR 330
D+G G +++ P P+ PP + P + P
Sbjct: 60 DEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAP 119
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P P P +P QP P P P P P + P
Sbjct: 120 RPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ--------------PAQ 165
Query: 391 PTRPPPPPPPPTTPRPTTQPPPI 413
P P P P +P P+
Sbjct: 166 QAFQPAEPVAAPQPEPVAEPAPV 188
Score = 35.4 bits (82), Expect = 0.11
Identities = 28/128 (21%), Positives = 35/128 (27%), Gaps = 23/128 (17%)
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
P P Q P P +PP + P AP P P P P
Sbjct: 86 PSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAP--------RPAQPAPQPVQQPAYQ-- 135
Query: 517 PAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCP 576
P P +P P PQ +P P P+ P P P
Sbjct: 136 -------PQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA------PQPEPV 182
Query: 577 RPPSPTPE 584
P+P +
Sbjct: 183 AEPAPVMD 190
Score = 35.0 bits (81), Expect = 0.14
Identities = 23/108 (21%), Positives = 30/108 (27%), Gaps = 9/108 (8%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P+ A P + P P P P V + P P P P
Sbjct: 71 VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQP--PEAQVPPQHAPRPAQPAPQP 128
Query: 537 TTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
P Q P+ +PL SP V P P+P +
Sbjct: 129 VQQPAYQ-------PQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQ 169
Score = 34.6 bits (80), Expect = 0.21
Identities = 26/139 (18%), Positives = 31/139 (22%), Gaps = 17/139 (12%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P Q P P +PP + P PA P
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP 132
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P P P + P P P P P P+ P+ P
Sbjct: 133 AYQPQPEQPLQQPVS---PQVAPA-------PQPVHSAPQPAQQAFQPAEPVAAPQPE-- 180
Query: 448 RCPSPPPTTPRPTTQPPPV 466
P P P P
Sbjct: 181 -----PVAEPAPVMDKPKR 194
Score = 33.9 bits (78), Expect = 0.40
Identities = 19/102 (18%), Positives = 25/102 (24%), Gaps = 1/102 (0%)
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRP-PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P + P P + P P P P P P P P
Sbjct: 92 YQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVA 151
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPR 552
P P + P + P P P P + P+
Sbjct: 152 PAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPK 193
Score = 33.1 bits (76), Expect = 0.57
Identities = 25/141 (17%), Positives = 32/141 (22%), Gaps = 20/141 (14%)
Query: 530 RCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYP 589
R R + RP P P P +PP V
Sbjct: 67 RVHRVNHAPANAQ-------EHEAARPSPQHQYQPPYASAQPRQPVQQPPE---AQVPPQ 116
Query: 590 GSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSP 649
+ P P P P Q P+P+ P P +P P P
Sbjct: 117 HAPRPAQPAPQPVQQP----------AYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQ 166
Query: 650 TPTCYPGSPDPRCRPSVPPPT 670
P+ P P
Sbjct: 167 AFQPAEPVAAPQPEPVAEPAP 187
Score = 32.7 bits (75), Expect = 0.84
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 567 YPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQP 626
P + PSP +Y S PR P P P + P P+P QP
Sbjct: 74 APANAQEHEAARPSPQHQYQPPYASAQPRQPVQQP---------PEAQVPPQHAPRPAQP 124
Query: 627 SPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPV 677
+P P+ P P+P P P +P P+ S P P Q F P
Sbjct: 125 APQPVQQPAYQ----PQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPA 171
Score = 31.9 bits (73), Expect = 1.6
Identities = 24/99 (24%), Positives = 25/99 (25%), Gaps = 9/99 (9%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRP-PPSPTPTTTPAPICYPGSNDPRCPTRPP-PPPPPPT 339
PR Q PP + P P P P P P P P P P P
Sbjct: 101 PRQPVQQPP----EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
P P P P P P P P
Sbjct: 157 VHS---APQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 44.4 bits (105), Expect = 2e-04
Identities = 35/132 (26%), Positives = 37/132 (28%), Gaps = 10/132 (7%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
PP PRP G P P P P T P+ DP P
Sbjct: 631 IISGFPPVFKTALPRPDYNRGG--EAGGPGVPGPVPVGMPAHTARPS---RVARGDPVRP 685
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
+ R P G P PPP P P C GSS PT PP P
Sbjct: 686 TAHHAALRA---PQAPRPGGPPGGGGGLPPPPDLPAAAGPAPC--GSSLIASPTAPPEPE 740
Query: 511 PPPPTTPAPPVC 522
PP
Sbjct: 741 PPGAEQADGAEN 752
Score = 44.0 bits (104), Expect = 4e-04
Identities = 36/139 (25%), Positives = 38/139 (27%), Gaps = 19/139 (13%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
PP PRP G P P P P T P+ A D
Sbjct: 631 IISGFPPVFKTALPRPDYNRGG--EAGGPGVPGPVPVGMPAHTARPSRVA-------RGD 681
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P PT P PRP PP G P PPP PAP S
Sbjct: 682 PVRPTAHHAALRAPQAPRP--GGPPGGGGGLP------PPPDLPAAAGPAPC--GSSLIA 731
Query: 448 RCPSPPPTTPRPTTQPPPV 466
+PP P Q
Sbjct: 732 SPTAPPEPEPPGAEQADGA 750
Score = 39.0 bits (91), Expect = 0.013
Identities = 23/114 (20%), Positives = 25/114 (21%), Gaps = 4/114 (3%)
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRC 531
P + P P A PG P P P P R
Sbjct: 637 PVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPT--AHHAALRA 694
Query: 532 PRPTPTTPPPPQCYLGSPDPRCPRP-LPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
P P PP G P P +P P P PP
Sbjct: 695 P-QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747
Score = 37.9 bits (88), Expect = 0.026
Identities = 28/120 (23%), Positives = 32/120 (26%), Gaps = 22/120 (18%)
Query: 295 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 354
G P P P P T P+ DP PT P PRP PP G
Sbjct: 655 GGPGVPGPVPVGMPAHTARPS---RVARGDPVRPTAHHAALRAPQAPRP--GGPPGGGGG 709
Query: 355 SPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPIC 414
P P P P + P ++ P PP P P
Sbjct: 710 LPPP--PDLPAAAGPAPCGSSLIA---------------SPTAPPEPEPPGAEQADGAEN 752
Score = 32.5 bits (74), Expect = 1.4
Identities = 15/74 (20%), Positives = 18/74 (24%)
Query: 273 DGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPP 332
G ++ T + P PG P PP P P S P
Sbjct: 679 RGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPE 738
Query: 333 PPPPPPTTPRPTTQ 346
P PP
Sbjct: 739 PEPPGAEQADGAEN 752
Score = 30.5 bits (69), Expect = 5.2
Identities = 24/139 (17%), Positives = 28/139 (20%), Gaps = 28/139 (20%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPP----PPTTPRPTTQPPPICY 352
P + P P PG P P P P
Sbjct: 637 PVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRA-- 694
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P+ PRP P P L P P P + T PP
Sbjct: 695 -----PQAPRPGGPPGGGGGLPPPPDL-----------PAAAGPAPCGSSLIASPTAPPE 738
Query: 413 ICYPGSPDPRCPRPPPSPT 431
P+P
Sbjct: 739 ------PEPPGAEQADGAE 751
Score = 30.2 bits (68), Expect = 7.1
Identities = 25/112 (22%), Positives = 31/112 (27%), Gaps = 12/112 (10%)
Query: 573 PRCPRPPSPTPEYV--CYPGSIDPRCPRPPPTTQETY-VCYPGSIDP--------RCPRP 621
P + P P+Y G P P T DP P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 622 QPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
Q P+P P G P P P + P P P P PP ++
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDL-PAAAGPAPCGSSLIASPTAPPEPEPPGAEQ 746
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 43.6 bits (103), Expect = 4e-04
Identities = 18/108 (16%), Positives = 21/108 (19%), Gaps = 14/108 (12%)
Query: 432 PTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
P P P P + P P P+ TP
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP------ 424
Query: 492 VCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTP 539
P PP P P + AP P P
Sbjct: 425 --------PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464
Score = 42.8 bits (101), Expect = 7e-04
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 6/74 (8%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
T+P P P + P P P+ TP T P
Sbjct: 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA------VPV 437
Query: 452 PPPTTPRPTTQPPP 465
PP+T +P
Sbjct: 438 NPPSTAPQAVRPAQ 451
Score = 42.5 bits (100), Expect = 0.001
Identities = 16/83 (19%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPT-TPAPLVCYPGSND 387
T+P P P + P P P+ TP T PA + P S
Sbjct: 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTA 443
Query: 388 PRCPTRPPPPPPPPTTPRPTTQP 410
P P +
Sbjct: 444 P--QAVRPAQFKEEKKIPVSKVS 464
Score = 41.3 bits (97), Expect = 0.002
Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 19/125 (15%)
Query: 286 TQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTT 345
P +P +P P+ A P + + P P + +P
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQS-----SAAAQPSAPQSATQPAG 422
Query: 346 QPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPR 405
PP + PP+ P P+T V + P +
Sbjct: 423 TPPTV----------SVDPPAAVPVNPPSTAPQAVRPA----QFKEEKKIPVSKVSSLGP 468
Query: 406 PTTQP 410
T +P
Sbjct: 469 STLRP 473
Score = 37.4 bits (87), Expect = 0.039
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 287 QPPPICYPGSPDPR---CPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
P SP P P +P T PA PT PP P
Sbjct: 390 PQPSAAAAASPSPSQSSAAAQPSAPQSATQPA---------GTPPTVSVDPPAAVPVNPP 440
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
+T P + + + + P S + P+T P+
Sbjct: 441 STAPQAVRPAQFKEEK--KIPVSKVSSLGPSTLRPI 474
Score = 35.9 bits (83), Expect = 0.094
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 16/114 (14%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 415
R P+ P T P P S P + P P + +P PP +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV-- 427
Query: 416 PGSPDPRCPRPPPSPT---PTTTPAPICYPGSNDPRCPSPPPTTP---RPTTQP 463
PP+ P +T P P T +P
Sbjct: 428 --------SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473
Score = 35.9 bits (83), Expect = 0.097
Identities = 20/93 (21%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 472 PDPRCPRPPPSPTPTTPA----PLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSN 527
R P+ P T PA P S P + P P T S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429
Query: 528 DPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSS 560
DP P PQ + + +P S
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKE-EKKIPVS 461
Score = 34.4 bits (79), Expect = 0.30
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 17/111 (15%)
Query: 408 TQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVC 467
P +P +P P+ A P + + P+ P+ TQP
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSA---AAQPSAPQSATQPA--- 421
Query: 468 YPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
G+P PP+ P P S RP +
Sbjct: 422 --GTPPTV-SVDPPAAVPVNP--------PSTAPQAVRPAQFKEEKKIPVS 461
Score = 34.0 bits (78), Expect = 0.37
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 623 PPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPF 682
P P P PS + + P +PS P +QP TP
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQP----AGTPP 425
Query: 683 VCTCNVTTPRPIPPPLCYPGSTDPRCPREEI-YPTQQIPS 721
+ + P+ PP P + P +EE P ++ S
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465
Score = 30.9 bits (70), Expect = 3.8
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 7/96 (7%)
Query: 578 PPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSP 637
P+ P P P S QP P G+P
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAA----AQPSAPQSATQPA-GTP 424
Query: 638 DPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
PP+ P P + RP+ +
Sbjct: 425 PTVSVDPPAAVPVNP--PSTAPQAVRPAQFKEEKKI 458
Score = 30.5 bits (69), Expect = 4.2
Identities = 18/109 (16%), Positives = 27/109 (24%), Gaps = 22/109 (20%)
Query: 495 PGSSDPRCPTRP----PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD 550
G P+ +P P P P A +P P Q +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAA------------------SPSPSQSSAAAQP 411
Query: 551 PRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRP 599
+ +PP P PPS P+ V + +
Sbjct: 412 SAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
Score = 30.5 bits (69), Expect = 5.3
Identities = 10/67 (14%), Positives = 16/67 (23%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
+ P P P PP+ P P+ + P +
Sbjct: 407 AAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSL 466
Query: 341 PRPTTQP 347
T +P
Sbjct: 467 GPSTLRP 473
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 43.1 bits (101), Expect = 6e-04
Identities = 28/207 (13%), Positives = 38/207 (18%), Gaps = 12/207 (5%)
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
T R T +P P P ++
Sbjct: 57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
P + PR P+ P P + T P + + P
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQ-------EHALSAVPEQLFAD 169
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPG-----SSDPRCPTRPPPPPPPPP 514
PV P P P P D P P
Sbjct: 170 FLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILP 229
Query: 515 TTPAPPVCYPGSNDPRCPRPTPTTPPP 541
PP+ + P P
Sbjct: 230 PAALPPIVVAPAAPAALAAVAAAAPAP 256
Score = 38.4 bits (89), Expect = 0.018
Identities = 35/215 (16%), Positives = 45/215 (20%), Gaps = 13/215 (6%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP----TRPPPPPP 336
T R T +P P P A
Sbjct: 57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116
Query: 337 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPP 396
P + PR P+ P P + T P L P T P
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV 176
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTT 456
P P P+ +P P + + P
Sbjct: 177 PRAP--------VQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQIL 228
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
P P PP V P +P +P P L
Sbjct: 229 P-PAALPPIVVAPAAPAALAAVAAAAPAPQNDEEL 262
Score = 31.9 bits (72), Expect = 1.7
Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 15/154 (9%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
++ PR P+ P P + T P + P
Sbjct: 118 VSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQ-------EHALSAV------PE 164
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP 398
P+ P +P P+P P A ++
Sbjct: 165 QLFADFLTTAPV--PRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDD 222
Query: 399 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 432
P P PP + P +P +P P
Sbjct: 223 ALPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 43.0 bits (102), Expect = 6e-04
Identities = 21/81 (25%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
P P+ + PP P PP P P T T +
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASS----NAPAQIPAD 573
Query: 392 TRPPPPPPPPTTPRPTTQPPP 412
+ PPPP P TP PT P
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594
Score = 41.9 bits (99), Expect = 0.002
Identities = 26/75 (34%), Positives = 32/75 (42%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
+ PPPP P T P P +P P P PPP+ T ++ AP P + P P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 451 SPPPTTPRPTTQPPP 465
P TP PT P
Sbjct: 580 IPEEPTPSPTKDSSP 594
Score = 41.5 bits (98), Expect = 0.002
Identities = 17/71 (23%), Positives = 22/71 (30%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
+ P P+ + PP P PP P P A + + PPPP
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 510 PPPPPTTPAPP 520
P PT
Sbjct: 580 IPEEPTPSPTK 590
Score = 41.1 bits (97), Expect = 0.003
Identities = 21/82 (25%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTT-PAPLVCYPGSNDPRCP 391
P Q P P P P P PT T P T P P ++
Sbjct: 515 GSASNTAKTPPPPQKSP------PPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPA 568
Query: 392 TRPPPPPPPPTTPRPTTQPPPI 413
P PPP P T P
Sbjct: 569 QIPADSSPPPPIPEEPTPSPTK 590
Score = 41.1 bits (97), Expect = 0.003
Identities = 24/70 (34%), Positives = 27/70 (38%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
S TP P + PP P P P+ P PTP P P S+ P PP
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 511 PPPPTTPAPP 520
PP P P P
Sbjct: 578 PPIPEEPTPS 587
Score = 40.7 bits (96), Expect = 0.004
Identities = 21/77 (27%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
P + P P P PT PPP PP P TQ P
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQ----PTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 423 CPRPPPSPTPTTTPAPI 439
P PP PT +P
Sbjct: 575 SPPPPIPEEPTPSPTKD 591
Score = 39.9 bits (94), Expect = 0.005
Identities = 19/72 (26%), Positives = 22/72 (30%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPP 337
P+ + PP P PP P P T + PPPP P
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE 582
Query: 338 PTTPRPTTQPPP 349
TP PT P
Sbjct: 583 EPTPSPTKDSSP 594
Score = 39.9 bits (94), Expect = 0.006
Identities = 20/80 (25%), Positives = 28/80 (35%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
+ PP P + P P P PPPPPPT + ++ P S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 356 PDPRCPRPPPSPTPTTTPTT 375
P P+P+PT +
Sbjct: 575 SPPPPIPEEPTPSPTKDSSP 594
Score = 39.9 bits (94), Expect = 0.006
Identities = 19/75 (25%), Positives = 22/75 (29%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
+ PP + P P P P P P P P T + P
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 451 SPPPTTPRPTTQPPP 465
SPPP P T P
Sbjct: 575 SPPPPIPEEPTPSPT 589
Score = 39.9 bits (94), Expect = 0.007
Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 13/90 (14%)
Query: 323 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCY 382
P TP P PPP P P +P TTP+P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPA----------PIQPSAPKTKQAATTPSPP--- 407
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P P P P P PT P PP
Sbjct: 408 PAKASPPIPVPAEPTEPSPTPPANAANAPP 437
Score = 39.6 bits (93), Expect = 0.007
Identities = 17/77 (22%), Positives = 18/77 (23%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
P S + P N P P P T PPP
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 362 RPPPSPTPTTTPTTPAP 378
PSPTP P
Sbjct: 421 PTEPSPTPPANAANAPP 437
Score = 39.2 bits (92), Expect = 0.010
Identities = 19/72 (26%), Positives = 21/72 (29%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPR 530
+ PP P + P P P P PPPPPP T A
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 531 CPRPTPTTPPPP 542
P P P P
Sbjct: 575 SPPPPIPEEPTP 586
Score = 39.2 bits (92), Expect = 0.010
Identities = 19/74 (25%), Positives = 20/74 (27%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
PS + AP P N P P P T PPP
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 425 RPPPSPTPTTTPAP 438
PSPTP A
Sbjct: 421 PTEPSPTPPANAAN 434
Score = 39.2 bits (92), Expect = 0.011
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
+ PPP P+ P P T P P + P P PPPT + +
Sbjct: 515 GSASNTAKTPPP-----------PQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQAS 563
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
+ P S P P+P+PT +
Sbjct: 564 SNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
Score = 38.8 bits (91), Expect = 0.014
Identities = 16/71 (22%), Positives = 19/71 (26%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
T P P P +P PT P P ++ P PPP
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 340 TPRPTTQPPPI 350
P T P
Sbjct: 580 IPEEPTPSPTK 590
Score = 38.0 bits (89), Expect = 0.024
Identities = 25/77 (32%), Positives = 32/77 (41%)
Query: 444 SNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCP 503
SN + P PP +P P PP+ P + P PPP PT T + +D P
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 504 TRPPPPPPPPPTTPAPP 520
P P P PT + P
Sbjct: 578 PPIPEEPTPSPTKDSSP 594
Score = 37.6 bits (88), Expect = 0.033
Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 478 RPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPT 537
S T TP P P P P P PPPT P PP ++ +
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 538 TPPPPQCYLGSPDPRCPRPLPSSPSPP 564
+ PPP P P PS
Sbjct: 574 SSPPP--------PIPEEPTPSPTKDS 592
Score = 37.2 bits (87), Expect = 0.041
Identities = 17/77 (22%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
P P P P P T +P P P P P
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPI-QPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421
Query: 392 TRPPPPPPPPTTPRPTT 408
T P P PP P +
Sbjct: 422 TEPSPTPPANAANAPPS 438
Score = 36.9 bits (86), Expect = 0.052
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
P P P P P P + TTP+P P P P P P P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP--PAKASPPIPVPAEPTEPSP 426
Query: 339 TTPRPTTQPPP 349
T P PP
Sbjct: 427 TPPANAANAPP 437
Score = 35.7 bits (83), Expect = 0.11
Identities = 23/96 (23%), Positives = 27/96 (28%), Gaps = 20/96 (20%)
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
S T T P P P P P P P P PP +
Sbjct: 514 SGSASNTAKTPPPPQ--KSPPPPAPTPPLPQPTATAPPPTPP----------PPPPTATQ 561
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
++ AP PPPP P TP+P
Sbjct: 562 ASSNAP--------AQIPADSSPPPPIPEEPTPSPT 589
Score = 34.9 bits (81), Expect = 0.19
Identities = 17/72 (23%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
P P P P P P + TTP+P P P P P
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP--PAKASPPIPVPAE 420
Query: 455 TTPRPTTQPPPV 466
T T P
Sbjct: 421 PTEPSPTPPANA 432
Score = 34.6 bits (80), Expect = 0.25
Identities = 16/67 (23%), Positives = 17/67 (25%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P S AP P + P P P P P P P P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 537 TTPPPPQ 543
T P P
Sbjct: 421 PTEPSPT 427
Score = 34.6 bits (80), Expect = 0.28
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
PPPP + P P P P PPPP S + P SSP
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 563 PPVCYPGSPDPRCPRPPSPTPEY 585
PP P S E
Sbjct: 578 PP---IPEEPTPSPTKDSSPEEI 597
Score = 33.8 bits (78), Expect = 0.45
Identities = 16/83 (19%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Query: 445 NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT 504
+ P P P + P TTP+P P + P P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP---PAKASPPIPV 417
Query: 505 RPPPPPPPPPTTPAPPVCYPGSN 527
P P P P N
Sbjct: 418 PAEPTEPSPTPPANAANAPPSLN 440
Score = 33.4 bits (77), Expect = 0.62
Identities = 17/65 (26%), Positives = 19/65 (29%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
S TPAP P + +P T PPP PSPTP
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428
Query: 486 TTPAP 490
A
Sbjct: 429 PANAA 433
Score = 33.0 bits (76), Expect = 0.77
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPP--LSPTTPAPP 887
TP P +PP P P P+ P PT P PP + + P SP P P
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE 582
Query: 888 QCYPGSPDPWSQNT 901
+ P S
Sbjct: 583 EPTPSPTKDSSPEE 596
Score = 33.0 bits (76), Expect = 0.78
Identities = 21/102 (20%), Positives = 22/102 (21%), Gaps = 24/102 (23%)
Query: 419 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
P + P P PS P T TT PP P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP-----------PA 409
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
P P P T P P PP P
Sbjct: 410 KASPPIPVPAEP-------------TEPSPTPPANAANAPPS 438
Score = 33.0 bits (76), Expect = 0.87
Identities = 15/75 (20%), Positives = 17/75 (22%), Gaps = 7/75 (9%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P P P P P P P + P P P P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIP-------VPAEP 421
Query: 451 SPPPTTPRPTTQPPP 465
+ P TP P
Sbjct: 422 TEPSPTPPANAANAP 436
Score = 32.6 bits (75), Expect = 0.99
Identities = 14/78 (17%), Positives = 16/78 (20%), Gaps = 2/78 (2%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P S + P P TTP P P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASP--PIPVP 418
Query: 421 PRCPRPPPSPTPTTTPAP 438
P P+P AP
Sbjct: 419 AEPTEPSPTPPANAANAP 436
Score = 32.2 bits (74), Expect = 1.2
Identities = 21/69 (30%), Positives = 26/69 (37%)
Query: 275 KGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPP 334
K P T P P +P P P PPP+ T ++ AP P + P P P
Sbjct: 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585
Query: 335 PPPPTTPRP 343
P P P
Sbjct: 586 PSPTKDSSP 594
Score = 31.9 bits (73), Expect = 1.9
Identities = 16/71 (22%), Positives = 19/71 (26%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
S TPAP P + +P P PPI P P P P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428
Query: 364 PPSPTPTTTPT 374
P +
Sbjct: 429 PANAANAPPSL 439
Score = 31.9 bits (73), Expect = 2.0
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
+ PPP +PP P TPP PQ +P P P P P++
Sbjct: 515 GSASNTAKTPPPPQKSPP-------------PPAPTPPLPQPTATAPPPTPPPPPPTATQ 561
Query: 563 PPVCYPGSPDPRCPRPPSPTPE 584
P PP E
Sbjct: 562 ASSNAPAQIPADSSPPPPIPEE 583
Score = 31.1 bits (71), Expect = 2.8
Identities = 20/72 (27%), Positives = 22/72 (30%)
Query: 559 SSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRC 618
S S P P P P P + P P PPPT + P I
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 619 PRPQPPQPSPTP 630
P P PTP
Sbjct: 575 SPPPPIPEEPTP 586
Score = 30.3 bits (69), Expect = 5.3
Identities = 21/91 (23%), Positives = 24/91 (26%), Gaps = 13/91 (14%)
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P P +P P PP P+ P S P PP P P
Sbjct: 361 PSAFISEIANASAPA--NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP 418
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
PT P+P P PP
Sbjct: 419 AEPTEPSPT-----------PPANAANAPPS 438
Score = 29.9 bits (68), Expect = 6.5
Identities = 19/70 (27%), Positives = 23/70 (32%)
Query: 612 GSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTS 671
GS P PPQ SP P P P+P P + P+ P S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 672 QPFIPVGLTP 681
P P+ P
Sbjct: 575 SPPPPIPEEP 584
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 43.2 bits (101), Expect = 7e-04
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P P P P P P P++ P DP P P P P P P P P P+ P PD
Sbjct: 560 PDEPIIPDPVD-PVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDP-VDPEPV-DPVIPD 616
Query: 421 PRCPRPPPSPTPTTT 435
P P S TP T
Sbjct: 617 PTIPDIGQSDTPPIT 631
Score = 37.5 bits (86), Expect = 0.041
Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 306 PSPTPTTTPAPICY-PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
P P P P+ P DP P P P P P P P P P+ P PDP P
Sbjct: 566 PDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDP-VDPEPV-DPVIPDPTIPDIG 623
Query: 365 PSPTPTTT 372
S TP T
Sbjct: 624 QSDTPPIT 631
Score = 36.7 bits (84), Expect = 0.069
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRP--PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P P P P + P PDP P P P P P P P+ P +P P P P P
Sbjct: 563 PIIPDPVD--PVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIP 620
Query: 512 PPPTTPAPPV 521
+ PP+
Sbjct: 621 DIGQSDTPPI 630
Score = 35.9 bits (82), Expect = 0.11
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 611 PGSIDPRCPRPQPPQP-SPTP----LCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRC--- 662
P +DP P P P P P P + P PDP P P P P P PDP
Sbjct: 566 PDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVD---PVIPDPTIPDI 622
Query: 663 -RPSVPPPTSQPFIP 676
+ PP T F P
Sbjct: 623 GQSDTPPITEHQFRP 637
Score = 35.2 bits (80), Expect = 0.20
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAP 886
P P P P P PDP P P P P P P PDP P P+ P P P
Sbjct: 566 PDPVDPVIPD--PVIPDPVDP-DPVDPVIPDPVIPDPVDPDPVDPE-PVDPVIPDP 617
Score = 34.4 bits (78), Expect = 0.35
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 473 DPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP----PPPPPPTTPAPPVCYPGSND 528
+P P P P P P++ P DP P P P P P P P P P D
Sbjct: 559 EPDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEP--VDPVIPD 616
Query: 529 PRCPRPTPTTPPP 541
P P + PP
Sbjct: 617 PTIPDIGQSDTPP 629
Score = 33.6 bits (76), Expect = 0.54
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 18/81 (22%)
Query: 545 YLGSPDPRCPRPL-PSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTT 603
Y+ +P P P+ P P P + P PDP P P P P +DP P P
Sbjct: 557 YIEPDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPV-----IPDPVDPDPVDPEP-- 609
Query: 604 QETYVCYPGSIDPRCPRPQPP 624
+DP P P P
Sbjct: 610 ----------VDPVIPDPTIP 620
Score = 33.2 bits (75), Expect = 0.73
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 324 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP----PPSPTPTTTPTTPAPL 379
DP P P P P P P P P PDP P P P P P P P P
Sbjct: 567 DPVDPVIPDPVIPDPVDPDPVD-------PVIPDPVIPDPVDPDPVDPEP-VDPVIPDPT 618
Query: 380 VCYPGSND 387
+ G +D
Sbjct: 619 IPDIGQSD 626
Score = 32.8 bits (74), Expect = 1.0
Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 16/78 (20%)
Query: 499 DPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLP 558
+P P P P P P P P DP P P PDP P P+
Sbjct: 559 EPDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPV------------IPDPVDPDPVD 606
Query: 559 SSPSPPVCYPGSPDPRCP 576
P PV PDP P
Sbjct: 607 PEPVDPVI----PDPTIP 620
Score = 32.5 bits (73), Expect = 1.3
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 379 LVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
L Y ++P P P P P P P P P+ P PDP P P P P P P
Sbjct: 554 LTSYIEPDEPIIPDPVDPVIPDPVIPDP-VDPDPV-DPVIPDPVIP-DPVDPDP-VDPEP 609
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPP 464
+ DP P P + PP
Sbjct: 610 V------DPVIPDPTIPDIGQSDTPP 629
Score = 32.5 bits (73), Expect = 1.4
Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPT- 535
P P P P P DP P P P P P P P + P DP P P
Sbjct: 560 PDEPIIPDPVDPV-------IPDPVIPD-PVDPDPVDPVIPDPVIPDPVDPDPVDPEPVD 611
Query: 536 PTTPPPPQCYLGSPD 550
P P P +G D
Sbjct: 612 PVIPDPTIPDIGQSD 626
Score = 32.1 bits (72), Expect = 1.6
Identities = 29/89 (32%), Positives = 29/89 (32%), Gaps = 21/89 (23%)
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRP-PPSPTPTTTPAPICYPGSNDPRCPSPPPTT 456
P P P P P PDP P P P P P DP P P
Sbjct: 560 PDEPIIPDPVD-------PVIPDPVIPDPVDPDPVDPVIP---------DPVIPDPVDPD 603
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P P PV P PDP P S TP
Sbjct: 604 P---VDPEPV-DPVIPDPTIPDIGQSDTP 628
Score = 31.7 bits (71), Expect = 2.3
Identities = 24/71 (33%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
P P P P P DP P P P P P P P P+ PDP P
Sbjct: 560 PDEPIIPDPVDPVIP-------DPVIPDPVDPDPVDPVIPDPVI-PDPV----DPDPVDP 607
Query: 362 RP--PPSPTPT 370
P P P PT
Sbjct: 608 EPVDPVIPDPT 618
Score = 31.3 bits (70), Expect = 3.0
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 622 QPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGS--PDPRCRPSVPPPTSQPFIPVGL 679
+P P P P PDP P P P P P PDP V P P IP
Sbjct: 562 EPIIPDPVD---PVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPT 618
Query: 680 TP 681
P
Sbjct: 619 IP 620
Score = 31.3 bits (70), Expect = 3.2
Identities = 26/85 (30%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRP-PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
P P P+ P PDP P P P P P P+ P P P P
Sbjct: 560 PDEPIIPDPV-DPVIPDPVIPDPVDPDPVDPVIPDPVI------------PDPVDPDPVD 606
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPP 365
P P P I P PD PP
Sbjct: 607 PEPVD--PVIPDPTIPDIGQSDTPP 629
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 43.1 bits (101), Expect = 7e-04
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCY 382
PP P P PT P P +PDP P P P PTP P A + Y
Sbjct: 920 PPSPPDPDPTPDPDP-----TPDPD-PTPDPEPTPAYQPVLNAKVGGY 961
Score = 42.7 bits (100), Expect = 0.001
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
PP P P PT P P +PDP P P P PTP P
Sbjct: 920 PPSPPDPDPTPDPDP-----TPDPD-PTPDPEPTPAYQP 952
Score = 40.4 bits (94), Expect = 0.005
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 21/55 (38%)
Query: 621 PQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFI 675
P PP P PTP PDP +P P PT PDP P P QP +
Sbjct: 921 PSPPDPDPTP-----DPDP------TPDPDPT-----PDPE-----PTPAYQPVL 954
Score = 38.5 bits (89), Expect = 0.019
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 441 YPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
Y S + PSPP P PT P P +PDP P P P PTP
Sbjct: 912 YLRSQEVTPPSPP--DPDPTPDPDP-----TPDPD-PTPDPEPTP 948
Score = 36.6 bits (84), Expect = 0.069
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 817 LTDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPR 876
L +D ++ + R+ T P+PP P +PDP P P P PT PDP P
Sbjct: 904 LVEDNNDW--YLRSQEVTPPSPPDPDP-TPDPD-PTPDPDPT-----------PDPE-PT 947
Query: 877 PPLSPTTPA 885
P P A
Sbjct: 948 PAYQPVLNA 956
Score = 35.4 bits (81), Expect = 0.15
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
PPSP P P DP PT P P P P TPA
Sbjct: 920 PPSPPDPDPTP--------DPD-PTPDPDPTPDPEPTPA 949
Score = 35.4 bits (81), Expect = 0.15
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 619 PRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYP 655
P P P P+P P P PDP P P PTP P
Sbjct: 921 PSPPDPDPTPDPDPTP-DPDP----TPDPEPTPAYQP 952
Score = 35.4 bits (81), Expect = 0.19
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
P PP P PT P P + DP P+P P P P QP
Sbjct: 920 PPSPPDPDPTPDPDP-----TPDPD-PTPDP-EPTPAYQP 952
Score = 35.0 bits (80), Expect = 0.20
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 13/46 (28%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 347
P PP P PT P P P P P P P P QP
Sbjct: 920 PPSPPDPDPTPDPDPT-------------PDPDPTPDPEPTPAYQP 952
Score = 34.6 bits (79), Expect = 0.26
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 265 NTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSN 323
N +Y + ++T P P P P +PDP P P P PTP P P P N
Sbjct: 908 NNDWYL----RSQEVTPPSPP-DPDP-----TPDPD-PTPDPDPTPDPEPTPAYQPVLN 955
Score = 34.6 bits (79), Expect = 0.29
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
PP PP P TP P DP P P PT P P
Sbjct: 920 PPSPPDPDPTPDP--------DP-TPDPDPTPDPEP 946
Score = 34.3 bits (78), Expect = 0.35
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 18/54 (33%)
Query: 533 RPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRP-PSPTPEY 585
R TPP P PDP P P P P +PDP P P P PTP Y
Sbjct: 914 RSQEVTPPSP------PDPD-PTP---DPDP------TPDPD-PTPDPEPTPAY 950
Score = 34.3 bits (78), Expect = 0.37
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 22/51 (43%)
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRP 556
PP PP P PT P P PT P P +PDP P P
Sbjct: 920 PPSPPDPDPT----------------PDPDPTPDPDP-----TPDPE-PTP 948
Score = 33.1 bits (75), Expect = 0.81
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 13/45 (28%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P P P P P P PT P P P P P P P
Sbjct: 921 PSPPDPDPTPDPDPTPDPDPT-------------PDPEPTPAYQP 952
Score = 32.7 bits (74), Expect = 1.1
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 17/50 (34%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 410
P PP P PT P DP P P P P P P QP
Sbjct: 920 PPSPPDPDPTPDP-------------DPT----PDPDPTPDPEPTPAYQP 952
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 41.9 bits (99), Expect = 0.001
Identities = 15/116 (12%), Positives = 20/116 (17%), Gaps = 12/116 (10%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
P + P +PPP+ P P P P
Sbjct: 54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQ 409
+P R A RP P +
Sbjct: 114 QAPAAPAERAAAENAARRLARAAAAAP------------RPRVPADAAAAVADAVK 157
Score = 39.9 bits (94), Expect = 0.005
Identities = 15/103 (14%), Positives = 18/103 (17%), Gaps = 6/103 (5%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P P PPP P P P A +
Sbjct: 53 PPAAAAPAAAQPPPAAAPAAVSRPAA------PAAEPAPWLVEHAKRLTAQREQLVARAA 106
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
+P P + R P P A
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149
Score = 39.9 bits (94), Expect = 0.005
Identities = 18/119 (15%), Positives = 26/119 (21%), Gaps = 17/119 (14%)
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
P P P + P P +P LV + T
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLV-----EHAKRLTAQREQLVARAA 106
Query: 516 TPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPR 574
PA P P + + R R ++P P V +
Sbjct: 107 APAAP------------EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVA 153
Score = 39.9 bits (94), Expect = 0.005
Identities = 14/105 (13%), Positives = 20/105 (19%), Gaps = 6/105 (5%)
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP--PPVCYPGSPDPR 475
+P P P PA + P + + T V +P
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAP--- 108
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
P + P P P A
Sbjct: 109 -AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152
Score = 39.9 bits (94), Expect = 0.006
Identities = 13/114 (11%), Positives = 13/114 (11%), Gaps = 12/114 (10%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P P PPP P A
Sbjct: 53 PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA----- 107
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P P PRP A
Sbjct: 108 -------PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVAD 154
Score = 38.4 bits (90), Expect = 0.015
Identities = 16/121 (13%), Positives = 21/121 (17%), Gaps = 18/121 (14%)
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQ 462
P P P + P P +P P + + T R +
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVE---------HAKRLTAQR---E 99
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPP--PPPPPPPTTPAPP 520
P P R P P A
Sbjct: 100 QLVARAAAPAAPEAQAPAAPAERAAAEN----AARRLARAAAAAPRPRVPADAAAAVADA 155
Query: 521 V 521
V
Sbjct: 156 V 156
Score = 36.9 bits (86), Expect = 0.043
Identities = 13/116 (11%), Positives = 17/116 (14%), Gaps = 12/116 (10%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
+P P P PA P P P +
Sbjct: 52 APPAAAAPAAAQPPPAAAPAA------------VSRPAAPAAEPAPWLVEHAKRLTAQRE 99
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
P +P + P P P
Sbjct: 100 QLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155
Score = 36.1 bits (84), Expect = 0.092
Identities = 18/115 (15%), Positives = 22/115 (19%), Gaps = 17/115 (14%)
Query: 383 PGSNDPRCPTRPPPPPPP----PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P + P PP P P P P + + R AP
Sbjct: 54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTA--QREQLVARAAAPAAP 111
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRP-PPSPTPTTPAPLV 492
P PRP P+ A V
Sbjct: 112 E----------AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAV 156
Score = 33.4 bits (77), Expect = 0.59
Identities = 20/124 (16%), Positives = 26/124 (20%), Gaps = 21/124 (16%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
P + P PPP P P P P T +
Sbjct: 54 PAAAAPAAAQPPP-AAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLV---------A 103
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSP 561
P P P PA +P PR P ++
Sbjct: 104 RAAAPAAPEAQAPAAPAERAAAE-------NAARRLARAAAA----APRPRVPADAAAAV 152
Query: 562 SPPV 565
+ V
Sbjct: 153 ADAV 156
Score = 32.6 bits (75), Expect = 0.97
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 2/71 (2%)
Query: 278 KITTPRPTTQP--PPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPP 335
+ + T + +P + P +P + RP P
Sbjct: 87 LVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPA 146
Query: 336 PPPTTPRPTTQ 346
+
Sbjct: 147 DAAAAVADAVK 157
Score = 29.5 bits (67), Expect = 7.9
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPA-PPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+P + P P P T +P + P +P A +
Sbjct: 67 AAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAE 126
Query: 889 CYP 891
Sbjct: 127 NAA 129
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 42.0 bits (99), Expect = 0.001
Identities = 17/68 (25%), Positives = 20/68 (29%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
P P + P PP P PA P +P P P P A P
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443
Query: 891 PGSPDPWS 898
+ D W
Sbjct: 444 ASAGDRWR 451
Score = 41.7 bits (98), Expect = 0.002
Identities = 18/78 (23%), Positives = 21/78 (26%), Gaps = 11/78 (14%)
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCP 554
P P P PP APPV P RP P PP
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPA-----------A 430
Query: 555 RPLPSSPSPPVCYPGSPD 572
P+ + P + D
Sbjct: 431 AAPPARSADPAAAASAGD 448
Score = 39.3 bits (92), Expect = 0.008
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 375 TPAPLVCYPGSNDPRCPTRPPP---PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPT 431
PAP G+ P P PPP PP PP P P +P P P P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARP-----APAPAPPAAAAPPA 435
Query: 432 PTTTPAP 438
+ PA
Sbjct: 436 RSADPAA 442
Score = 38.2 bits (89), Expect = 0.019
Identities = 13/63 (20%), Positives = 16/63 (25%)
Query: 349 PICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTT 408
P + P P +P P P P P + P PP PP
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441
Query: 409 QPP 411
Sbjct: 442 AAA 444
Score = 37.8 bits (88), Expect = 0.027
Identities = 16/65 (24%), Positives = 18/65 (27%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P P P P P P P P P P P P+P P +
Sbjct: 385 PSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAA 444
Query: 385 SNDPR 389
S R
Sbjct: 445 SAGDR 449
Score = 37.4 bits (87), Expect = 0.037
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
G+ P P P P P P PP P RP P+P P AP
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPPV-PPAAPARPAAARPAPAPAPPAAAAP 433
Score = 37.0 bits (86), Expect = 0.041
Identities = 15/66 (22%), Positives = 18/66 (27%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
R PP + PPP+ P PA P + P PP PP
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438
Query: 343 PTTQPP 348
Sbjct: 439 DPAAAA 444
Score = 35.1 bits (81), Expect = 0.18
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 487 TPAPLVCYPGSSDPRCPTRPPP---PPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
PAP G+ P P PPP PP PP PA P P P P P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPA-APARPAAAR-------PAPAPAPPAAA 431
Score = 35.1 bits (81), Expect = 0.20
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDP-RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
P PP + TPA P + P P PP P P P PP
Sbjct: 380 GAPAPPSAAWGAPTPAA---PAAPPPAAAPPVPPAAPARPAAARPA--------PAPAPP 428
Query: 481 PSPTPTTPAPLVCYPGSSDPR 501
+ P + S+ R
Sbjct: 429 AAAAPPARSADPAAAASAGDR 449
Score = 35.1 bits (81), Expect = 0.20
Identities = 15/62 (24%), Positives = 20/62 (32%)
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
R PP + PPP+ P P P ++ P PP PP +
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438
Query: 518 AP 519
P
Sbjct: 439 DP 440
Score = 35.1 bits (81), Expect = 0.20
Identities = 20/87 (22%), Positives = 23/87 (26%), Gaps = 22/87 (25%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
P S P+P P PPV P RP P+P
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAP------------------ 425
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSND 528
PP PP A P + D
Sbjct: 426 ----APPAAAAPPARSADPAAAASAGD 448
Score = 34.7 bits (80), Expect = 0.26
Identities = 17/69 (24%), Positives = 19/69 (27%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
P S P P P AP P + RP P P PP P +
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443
Query: 354 GSPDPRCPR 362
S R
Sbjct: 444 ASAGDRWRA 452
Score = 34.3 bits (79), Expect = 0.31
Identities = 16/63 (25%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTP 539
PPS P P ++ P P PP P A P P P P
Sbjct: 384 PPSAAWGAPTPA---APAAPPPAAAPPVPPAAPARPAAARPA----------PAPAPPAA 430
Query: 540 PPP 542
P
Sbjct: 431 AAP 433
Score = 33.9 bits (78), Expect = 0.47
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 578 PPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSP 637
P +P E + +++ P PP P P P P+ P P +P
Sbjct: 363 PGAPVSELLDRLEALERGAPAPPSAAWGA---------PTPAAPAAPPPAAAPPVPPAAP 413
Query: 638 DPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQ 672
P+P+P P P P+
Sbjct: 414 ARPAAARPAPAPAPPAAAAPPARSADPAAAASAGD 448
Score = 33.6 bits (77), Expect = 0.55
Identities = 15/77 (19%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 412 PICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGS 471
P + P P +P P P P P RP P P P +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPV--------PPAAPARPAAARPAPAPAP---PAA 430
Query: 472 PDPRCPRPPPSPTPTTP 488
P P+ +
Sbjct: 431 AAPPARSADPAAAASAG 447
Score = 33.2 bits (76), Expect = 0.65
Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 12/77 (15%)
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
P P+ TPA P + P P P P P PP
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPP-VPPAAPARPAAARPAPAPAPPA--------- 429
Query: 422 RCPRPPPSPTPTTTPAP 438
PP+ + A
Sbjct: 430 --AAAPPARSADPAAAA 444
Score = 33.2 bits (76), Expect = 0.78
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 300 RCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 359
P PP + TPA P + P PP PP P RP P +P P
Sbjct: 380 GAPAPPSAAWGAPTPAA---PAAPPP--AAAPPVPPAAP--ARPAAARP------APAPA 426
Query: 360 CPRPPPSPTPTTTPTTPA 377
P P + P A
Sbjct: 427 PPAAAAPPARSADPAAAA 444
Score = 32.8 bits (75), Expect = 0.83
Identities = 17/66 (25%), Positives = 19/66 (28%)
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
P S PT P PPP P P + P PP + P A
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443
Query: 443 GSNDPR 448
S R
Sbjct: 444 ASAGDR 449
Score = 32.8 bits (75), Expect = 0.89
Identities = 16/74 (21%), Positives = 20/74 (27%)
Query: 405 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP 464
R PP + PPP+ P PA P + P PP P +
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438
Query: 465 PVCYPGSPDPRCPR 478
S R
Sbjct: 439 DPAAAASAGDRWRA 452
Score = 32.4 bits (74), Expect = 1.4
Identities = 20/85 (23%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 392 TRPPPPPPP---PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
P PP TP PPP + P P P+ PAP
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPP-----AAAPPVPPAAPARPAAARPAPA--------- 424
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPD 473
P+PP P P + D
Sbjct: 425 -PAPPAAAAPPARSADPAAAASAGD 448
Score = 31.6 bits (72), Expect = 1.9
Identities = 17/88 (19%), Positives = 20/88 (22%), Gaps = 21/88 (23%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
G+ P P P P P P PP P RP P+P P
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPPV-PPAAPARPAAARPAPAPAPPAAA------- 431
Query: 381 CYPGSNDPRCPTRPPPPPPPPTTPRPTT 408
PP +
Sbjct: 432 -------------APPARSADPAAAASA 446
Score = 31.3 bits (71), Expect = 2.5
Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 21/78 (26%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
TP PPP + P P P+ PAP P PP
Sbjct: 392 PTPAAPAAPPP-----AAAPPVPPAAPARPAAARPAP--------------APAPPAAAA 432
Query: 340 TPRPTTQPPPICYPGSPD 357
P + P + D
Sbjct: 433 PPARSADPAA--AASAGD 448
Score = 31.3 bits (71), Expect = 2.8
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 538 TPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCP 597
P PP G+P P P P + +PPV +P P+P P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPA-APARPAAARPAPAP----------APPA 429
Query: 598 RPPPTTQETYVCYPGSIDPRCPR 620
P + S R
Sbjct: 430 AAAPPARSADPAAAASAGDRWRA 452
Score = 30.9 bits (70), Expect = 3.3
Identities = 14/52 (26%), Positives = 17/52 (32%)
Query: 843 PGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSP 894
P P P P+ PP P P RP + PAP +P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433
Score = 30.9 bits (70), Expect = 3.6
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 525 GSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPT 582
G+ P TP P P P P++P+ P +P P P +P
Sbjct: 380 GAPAPPSAAWGAPTPAAPA---APPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPP 434
Score = 29.7 bits (67), Expect = 8.8
Identities = 11/43 (25%), Positives = 13/43 (30%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPD 871
P PA P +P P P P A P + D
Sbjct: 406 PPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGD 448
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 41.3 bits (96), Expect = 0.002
Identities = 29/143 (20%), Positives = 36/143 (25%), Gaps = 26/143 (18%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPT 392
P P P + P P P S R P +PTP +
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEK------------------ 81
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP--PPSPTPTTTPAPICYPGSNDPRCP 450
P P + P P P P + AP S + P
Sbjct: 82 ---FDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKP 138
Query: 451 SPPPTTPRPTTQPPPVCYPGSPD 473
P T PPP Y S +
Sbjct: 139 DPAAHT---QHSPPPFAYTRSME 158
Score = 35.9 bits (82), Expect = 0.11
Identities = 24/129 (18%), Positives = 32/129 (24%), Gaps = 4/129 (3%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
+ P T A + P P P T + +P P
Sbjct: 23 NTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKF 82
Query: 425 RPPPSPT--PTTTPAPICYPGSNDPRCPSPP-PTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
P P+P + P P P P T P S + P P
Sbjct: 83 DPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAA 142
Query: 482 SPTPTTPAP 490
T +P P
Sbjct: 143 H-TQHSPPP 150
Score = 35.1 bits (80), Expect = 0.19
Identities = 26/122 (21%), Positives = 32/122 (26%), Gaps = 18/122 (14%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P P P + P P P S R P +PTP + DP P
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKF-------DP----APAP 88
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRP--PPSPTPT-----TPAPLVCYPGSSDPRCPTRPPP 508
+ P P P P + A DP T+ P
Sbjct: 89 HQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
Query: 509 PP 510
PP
Sbjct: 149 PP 150
Score = 34.7 bits (79), Expect = 0.24
Identities = 30/143 (20%), Positives = 38/143 (26%), Gaps = 20/143 (13%)
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT-TPRPTT 461
T P + PDP P P + P P P S R P TP +
Sbjct: 24 TNIPIPELHTSAATQKPDPA---PAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASE 80
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
+ P P R P P +P + P P
Sbjct: 81 KFDPAPAPHQAASRAPDPAVAPQ------------LAAAPKP-DAAEAFTSAAQAHEAPA 127
Query: 522 CYPGSNDPRCPRP---TPTTPPP 541
S + P P T +PPP
Sbjct: 128 DAGTSAASKKPDPAAHTQHSPPP 150
Score = 34.7 bits (79), Expect = 0.25
Identities = 33/166 (19%), Positives = 43/166 (25%), Gaps = 31/166 (18%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
T P + PDP P P + P P P S R P P T
Sbjct: 24 TNIPIPELHTSAATQKPDPA---PAPHQAASRAPDPAVAPTSAASRKPDLAQAP-----T 75
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P + + P P R P P +P P P
Sbjct: 76 PAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPK---------------------PDAAE 114
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
T P S + +P P+ +P P Y S +
Sbjct: 115 AFTSAAQAHEAPADAGTSAASK--KPDPAAHTQHSPPPFAYTRSME 158
Score = 31.2 bits (70), Expect = 2.8
Identities = 22/122 (18%), Positives = 28/122 (22%), Gaps = 20/122 (16%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ P P P S R P +PTP + P P
Sbjct: 46 PHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEK-----------------FDPAPAP 88
Query: 340 TPRPTTQPPPICYPGSPDPRCPRP--PPSPTPTTTP-TTPAPLVCYPGSNDPRCPTRPPP 396
+ P P P P + A DP T+ P
Sbjct: 89 HQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
Query: 397 PP 398
PP
Sbjct: 149 PP 150
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 41.2 bits (96), Expect = 0.002
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP-PSPTPTTTPTTPAPLVCYPGSNDPRCP 391
PP PP P P P + S R P P+ PT P V P + P
Sbjct: 173 PPNPPREAPAPGL---PKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP 229
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
+ P P TP+ Q PP G R
Sbjct: 230 QQQPVQPAQQPTPQNPAQQPPQTEQGHKRSR 260
Score = 40.4 bits (94), Expect = 0.004
Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 427 PPSPTPTTTPAP---ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
PP+P P PAP + S+ R P T +PT Q P P + P P
Sbjct: 173 PPNP-PREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQ----QPTVQNPAQQPQQ 227
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P + PT P PP T
Sbjct: 228 QPQQQPV-------QPAQQPTPQNPAQQPPQTEQG 255
Score = 38.9 bits (90), Expect = 0.011
Identities = 27/115 (23%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 311 TTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 370
T PA Y ++ P PP P P P+ T S R P PT
Sbjct: 156 TYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFT---------SSHGHRHRHAPKPTQQ 206
Query: 371 TTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
T PA P +P + P P + T P P + R
Sbjct: 207 PTVQNPAQ---QPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258
Score = 37.0 bits (85), Expect = 0.047
Identities = 23/94 (24%), Positives = 25/94 (26%), Gaps = 20/94 (21%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P+PP P P G P+P PT PA PT P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQ-----------PTVQNPA 222
Query: 510 PPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P PV P PT P Q
Sbjct: 223 QQPQQQPQQQPVQ---------PAQQPTPQNPAQ 247
Score = 37.0 bits (85), Expect = 0.048
Identities = 19/90 (21%), Positives = 22/90 (24%), Gaps = 13/90 (14%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
PP PP P P G P+P PT P
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPA-------------QQPTVQ 219
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P Q P P P + P+ P
Sbjct: 220 NPAQQPQQQPQQQPVQPAQQPTPQNPAQQP 249
Score = 36.2 bits (83), Expect = 0.083
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 305 PPSPTPTTTPAP---ICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
PP+P P PAP + S+ R P P PT P QP + P
Sbjct: 173 PPNP-PREAPAPGLPKTFTSSHGHR-HRHAPKPTQQPTVQNPAQQPT---------VQNP 221
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPR 405
P P P PA PT P PP T +
Sbjct: 222 AQQPQQQPQQQPVQPAQQ-----------PTPQNPAQQPPQTEQ 254
Score = 35.0 bits (80), Expect = 0.16
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 23/94 (24%)
Query: 384 GSNDPRCPTRPPPPPPPPTT------------PRPTTQPPPICYPGSPDPRCPRPPPSPT 431
G+ P P R P P P T P+PT QP P + P P
Sbjct: 169 GTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQ 228
Query: 432 PTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
P P P+ PT P QPP
Sbjct: 229 PQQQPVQ-----------PAQQPTPQNPAQQPPQ 251
Score = 34.6 bits (79), Expect = 0.21
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 509 PPPPPPTTPAP--PVCYPGSNDPR-----CPRPTPTTPPPPQCYLGSPDPRCPRPLPSSP 561
PP PP PAP P + S+ R P PT P Q P + P P
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQ----QPTVQNPAQQPQQQ 228
Query: 562 SPPVCYPGSPDPRCPRPPSPTPE 584
+ P P P+
Sbjct: 229 PQQQPVQPAQQPTPQNPAQQPPQ 251
Score = 34.6 bits (79), Expect = 0.22
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 592 IDPRCPR--PPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSP 649
I P PR P P +T+ G P+P P P +P P
Sbjct: 172 IPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQ 231
Query: 650 TPTCYPGSPDPRCRPSVPPPTSQ 672
P P P+ PP T Q
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQ 254
Score = 34.6 bits (79), Expect = 0.23
Identities = 19/82 (23%), Positives = 27/82 (32%)
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTP 539
PP+P PAP + +S R P P PT P N + P+ P
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232
Query: 540 PPPQCYLGSPDPRCPRPLPSSP 561
P +P +P +
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254
Score = 34.6 bits (79), Expect = 0.25
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P+PT QP P + P P P P P + P P P P
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQ-----------PAQQPTPQNPAQQP 249
Query: 342 RPTTQ 346
T Q
Sbjct: 250 PQTEQ 254
Score = 34.3 bits (78), Expect = 0.30
Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 507 PPPPP---PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSP 563
PP PP P P P G P+PT + +P
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232
Query: 564 PVCYPGSPDPRCPRPPSPTPE 584
PV P P+ P P E
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTE 253
Score = 34.3 bits (78), Expect = 0.32
Identities = 15/71 (21%), Positives = 18/71 (25%), Gaps = 15/71 (21%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
R P PT T + P P P Q P P P +
Sbjct: 198 RHAPKPTQQPTV---------------QNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTP 242
Query: 363 PPPSPTPTTTP 373
P+ P T
Sbjct: 243 QNPAQQPPQTE 253
Score = 33.5 bits (76), Expect = 0.58
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 551 PRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCY 610
P PR P+ P P + S R P PT + + P P Q+
Sbjct: 174 PNPPREAPA-PGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232
Query: 611 PGSIDPRCPRPQPPQPSPTP 630
P + P Q P
Sbjct: 233 PVQPAQQPTPQNPAQQPPQT 252
Score = 32.7 bits (74), Expect = 0.85
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
T +PT Q P P P P P+ + PT P PP T
Sbjct: 204 TQQPTVQNPA------QQPTVQNPAQQPQQQPQQQPV-----QPAQQPTPQNPAQQPPQT 252
Query: 341 PR 342
+
Sbjct: 253 EQ 254
Score = 31.2 bits (70), Expect = 2.6
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 621 PQPPQPSPTP---LCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPV 677
P PP+ +P P + S R P P+ PT +P +P+V P QP
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTV----QNPAQQPTVQNPAQQPQQQP 229
Query: 678 GLTPFVCTCNVTTPRPIPPP 697
P T P P
Sbjct: 230 QQQPVQPAQQPTPQNPAQQP 249
Score = 30.8 bits (69), Expect = 4.0
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 845 SPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSP 894
+ P P PT P Q P + +P PT P Q P +
Sbjct: 204 TQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 40.7 bits (95), Expect = 0.004
Identities = 19/77 (24%), Positives = 22/77 (28%), Gaps = 12/77 (15%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P P P R P P+ RP P+P + P P P P
Sbjct: 395 PEPDLPQPDRHPG-------PAKPEAPGARPAELPSPASAPTP-----EQQPPVARSAPL 442
Query: 456 TPRPTTQPPPVCYPGSP 472
P P P G P
Sbjct: 443 PPSPQASAPRNVASGKP 459
Score = 39.2 bits (91), Expect = 0.011
Identities = 23/87 (26%), Positives = 25/87 (28%), Gaps = 22/87 (25%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPT 392
P P P R P P P +P R P PSP TP
Sbjct: 395 PEPDLPQPDR---HPGPA-KPEAPGAR-PAELPSPASAPTPEQ----------------- 432
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSP 419
+PP P P P P G P
Sbjct: 433 QPPVARSAPLPPSPQASAPRNVASGKP 459
Score = 38.4 bits (89), Expect = 0.017
Identities = 19/90 (21%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 277 LKITTPRPTTQPPPICYPGSPDPRCPRPPPSPT----------PTTTPAPICYPGSNDPR 326
+++ P P P P P P PA + P S P
Sbjct: 371 IELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASA-PT 429
Query: 327 CPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
+PP P P P P G P
Sbjct: 430 PEQQPPVARSAPLPPSPQASAPRNVASGKP 459
Score = 35.7 bits (82), Expect = 0.11
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 404 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
P P GSPD + P P P P +PG P P P RP P
Sbjct: 376 NDGGVAPSPA---GSPDVKKKAPEPDL-----PQPDRHPG---PAKPEAP--GARPAELP 422
Query: 464 PPVCYPGSPDPRCPRPPPSPTPTTPA 489
P P +P+ + P +P P +P
Sbjct: 423 SPASAP-TPEQQPPVARSAPLPPSPQ 447
Score = 35.3 bits (81), Expect = 0.18
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 16/98 (16%)
Query: 430 PTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP-TTP 488
P+P GS D + +P P P+P P P P+ RP P+P + P
Sbjct: 376 NDGGVAPSPA---GSPDVKKKAPEPDLPQPDRHPGPA----KPEAPGARPAELPSPASAP 428
Query: 489 APLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS 526
P + + P P PP P AP G
Sbjct: 429 TP--------EQQPPVARSAPLPPSPQASAPRNVASGK 458
Score = 33.8 bits (77), Expect = 0.53
Identities = 27/98 (27%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 561 PSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPR 620
PSP GSPD + P P+ +PG P P P P S P
Sbjct: 382 PSPA----GSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAEL----PSPAS--APTPE 431
Query: 621 PQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSP 658
QPP PL P P S G P
Sbjct: 432 QQPPVARSAPL----------PPSPQASAPRNVASGKP 459
Score = 32.6 bits (74), Expect = 1.0
Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
P P GSPD + P P P +PG + P P P P P +
Sbjct: 376 NDGGVAPSPA---GSPDVKKKAPEPDL-PQPDR----HPGPAKPEAPGARPAELPSPASA 427
Query: 517 PAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P P R P P P
Sbjct: 428 PTP------EQQPPVARSAPLPPSPQA 448
Score = 31.5 bits (71), Expect = 2.2
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 384 GSNDPRCPTRPPPPPPPPTTP------RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA 437
GS D + P P P P P +P + P S +PP + + P+
Sbjct: 386 GSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPS 445
Query: 438 PICYPGSN 445
P N
Sbjct: 446 PQASAPRN 453
Score = 31.5 bits (71), Expect = 2.3
Identities = 21/105 (20%), Positives = 23/105 (21%), Gaps = 23/105 (21%)
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P P P P P P P RP P P
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPE-----------APGARPAELPSP 424
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPT-PTTTPAPICYPGS 444
+ P P QPP R P P P + G
Sbjct: 425 ASAPTPEQQPP-----------VARSAPLPPSPQASAPRNVASGK 458
Score = 30.7 bits (69), Expect = 3.9
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPP-------PSPTTPAPPQCYPGSPDPRCPRPPLSP 881
+ P P P P + P P P P PSP + P+ P P R P SP
Sbjct: 393 KAPEPDLPQPDR----HPGPAKPEAPGARPAELPSPASAPTPEQQP--PVARSAPLPPSP 446
Query: 882 TTPAPPQCYPGSP 894
AP G P
Sbjct: 447 QASAPRNVASGKP 459
Score = 30.7 bits (69), Expect = 4.6
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 625 QPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPR---CRPSVPPPTSQPFIPVGLTP 681
PSP GSPD + P P P +PG P RP+ P + P P
Sbjct: 381 APSPA-----GSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435
Query: 682 FVCTCNVTTPRPIPP 696
V P+PP
Sbjct: 436 ------VARSAPLPP 444
Score = 30.3 bits (68), Expect = 5.1
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 831 PSPT------TPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTP 884
PSP AP P P P +P P S +PP++ + P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441
Query: 885 APPQCYPGSP 894
PP +P
Sbjct: 442 LPPSPQASAP 451
Score = 30.3 bits (68), Expect = 6.3
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 496 GSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPR 555
GS D + P P P PG+ P P P Q P R
Sbjct: 386 GSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ----PPVARSA- 440
Query: 556 PLPSSPS---PPVCYPGSP 571
PLP SP P G P
Sbjct: 441 PLPPSPQASAPRNVASGKP 459
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 39.8 bits (93), Expect = 0.007
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 338 PTTPRPTTQPPPICYPGSPDP-RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPP 396
+ + + P + P + T TTT TT P S D +
Sbjct: 228 ESDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKSIDDHKLSLNQA 287
Query: 397 PPPPPTTPRPTTQP 410
P +P P
Sbjct: 288 PEKFKNNTKPDDDP 301
Score = 33.6 bits (77), Expect = 0.59
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 307 SPTPTTTPAPICYPG-SNDPRCPTRPPPPPPPPTTPRPTTQP 347
+ T TTT P S D + P +P P
Sbjct: 260 TTTTTTTFQPRTRKRKSIDDHKLSLNQAPEKFKNNTKPDDDP 301
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 39.4 bits (92), Expect = 0.007
Identities = 15/80 (18%), Positives = 18/80 (22%), Gaps = 1/80 (1%)
Query: 470 GSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDP 529
G P P P+ L S PT P P P + +P
Sbjct: 349 GVAAVAPPAPAPADLTQRLNRLE-KEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEP 407
Query: 530 RCPRPTPTTPPPPQCYLGSP 549
P P G
Sbjct: 408 ARSAEAPPLVAPAAAPAGLA 427
Score = 36.4 bits (84), Expect = 0.073
Identities = 13/73 (17%), Positives = 17/73 (23%), Gaps = 1/73 (1%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPP-PPPPTTPRPTTQPPPICYPGSPDPRC 360
P P T + + PT P P + PP P
Sbjct: 355 PPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAP 414
Query: 361 PRPPPSPTPTTTP 373
P P+ P
Sbjct: 415 PLVAPAAAPAGLA 427
Score = 35.6 bits (82), Expect = 0.13
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP-PPPPTTPRPTTQPPPICYPGSPDPR 422
PP+P P L + PT P P + PP +P+P
Sbjct: 355 PPAPAPADLTQRLNRLE-KEVRSLRSAPTAAATAAGAPLPDFDPRPRGPP-----APEPA 408
Query: 423 CPRPPPSPTPTTTPAPICYPGS 444
P P AP
Sbjct: 409 RSAEAP-PLVAPAAAPAGLALR 429
Score = 34.8 bits (80), Expect = 0.24
Identities = 21/103 (20%), Positives = 25/103 (24%), Gaps = 28/103 (27%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P P T + + P+ T P P DPR PR PP+P
Sbjct: 355 PPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGA---PLP-----DFDPR-PRGPPAP 405
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS 526
P A PP A P
Sbjct: 406 EPARSAE-------------------APPLVAPAAAPAGLALR 429
Score = 34.4 bits (79), Expect = 0.25
Identities = 20/94 (21%), Positives = 25/94 (26%), Gaps = 18/94 (19%)
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
P PA + + + + P P DPR PR PP+P
Sbjct: 349 GVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLP-DFDPR-PRGPPAPE 406
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P A PP P PA
Sbjct: 407 PARSA----------------EAPPLVAPAAAPA 424
Score = 34.4 bits (79), Expect = 0.28
Identities = 19/82 (23%), Positives = 22/82 (26%), Gaps = 12/82 (14%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
PP P P T R + P + P DPR
Sbjct: 353 VAPPAPAPADLTQRLNRLEKEV----RSLRSAPTAAATAAGAPLPDF-------DPRPRG 401
Query: 452 PP-PTTPRPTTQPPPVCYPGSP 472
PP P R PP V +P
Sbjct: 402 PPAPEPARSAEAPPLVAPAAAP 423
Score = 33.3 bits (76), Expect = 0.57
Identities = 18/79 (22%), Positives = 20/79 (25%), Gaps = 11/79 (13%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPT---TPAPLVCYPGS 385
PP P P T R + S +P P P PAP
Sbjct: 353 VAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPE------ 406
Query: 386 NDPRCPTRPPPPPPPPTTP 404
P PP P P
Sbjct: 407 --PARSAEAPPLVAPAAAP 423
Score = 32.9 bits (75), Expect = 0.85
Identities = 18/94 (19%), Positives = 22/94 (23%), Gaps = 14/94 (14%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
P P P+P T R P P
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGA--------PLP---- 393
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
DPR PR PP+P P + P +
Sbjct: 394 -DFDPR-PRGPPAPEPARSAEAPPLVAPAAAPAG 425
Score = 31.7 bits (72), Expect = 2.0
Identities = 12/62 (19%), Positives = 14/62 (22%), Gaps = 3/62 (4%)
Query: 839 PQCYPGSPDPRCPRPPPSPTTPAPPQCYP---GSPDPRCPRPPLSPTTPAPPQCYPGSPD 895
P + P P G P P R +P AP G
Sbjct: 369 RLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLAL 428
Query: 896 PW 897
W
Sbjct: 429 RW 430
Score = 29.8 bits (67), Expect = 7.5
Identities = 14/87 (16%), Positives = 17/87 (19%), Gaps = 7/87 (8%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
P P P T + + P + P P DPR
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGA-PLPDF------DPR 398
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSND 528
P P P P
Sbjct: 399 PRGPPAPEPARSAEAPPLVAPAAAPAG 425
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 39.0 bits (91), Expect = 0.009
Identities = 24/69 (34%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P P T TQPPPV DPR P PP P P T R P P
Sbjct: 52 LVPLPGTT--ATQPPPVVLTPWSDPRLPDPPHLPDPQTH-----------SATAHRNPHP 98
Query: 510 PPPPPTTPA 518
P P A
Sbjct: 99 PLNSPARIA 107
Score = 36.3 bits (84), Expect = 0.056
Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRP 394
P P TT TQPPP+ DPR P PP P P T T P
Sbjct: 54 PLPGTT---ATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATA--------------HRNP 96
Query: 395 PPPPPPPTT 403
PP P
Sbjct: 97 HPPLNSPAR 105
Score = 35.9 bits (83), Expect = 0.085
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 285 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
TQPPP+ DPR P PP P P T A P PP P
Sbjct: 60 ATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATA----------HRNPHPPLNSPAR 105
Score = 34.7 bits (80), Expect = 0.18
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P P TT TQPPP+ DPR P PP P P T A R P PP +P
Sbjct: 54 PLPGTT---ATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATA-------HRNPHPPLNSP 103
Query: 458 RPTT 461
Sbjct: 104 ARIA 107
Score = 32.4 bits (74), Expect = 0.88
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P P T T P + P S DPR P PP P Q +P P P SP
Sbjct: 52 LVPLPGTTATQPPPVVLTPWS-DPRLPDPP---HLPDPQTHSATAHRNPHP----PLNSP 103
Query: 484 TPTTPAP 490
Sbjct: 104 ARIAHVH 110
Score = 32.0 bits (73), Expect = 1.3
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P P TT T P P+V P S DPR P P P P + P P
Sbjct: 52 LVPLPGTTATQPPPVVLTPWS-DPRLPDPPHLPDPQTHSATAHRNPHP 98
Score = 31.3 bits (71), Expect = 2.2
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
T+PPP P + PP + P + R P P +
Sbjct: 61 TQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSPARIAHVH 110
Score = 30.9 bits (70), Expect = 2.9
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
P P T T P + P S+ PP P P T + P
Sbjct: 52 LVPLPGTTATQPPPVVLTPWSDPR--LPDPPHLPDPQTHSATAHRNP------------- 96
Query: 362 RPPPSPTPTTTPTTP 376
PP +P
Sbjct: 97 -HPPLNSPARIAHVH 110
Score = 30.5 bits (69), Expect = 4.0
Identities = 19/76 (25%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P P T T P P+V P S R P PP P + R P P
Sbjct: 52 LVPLPGTTATQPPPVVLTPWS-----DPRLPDPPHLPDPQTHS------ATAHRNPHPPL 100
Query: 537 TTPPPPQCYLGSPDPR 552
+P P
Sbjct: 101 NSPARIAHVHQDFQPV 116
Score = 30.1 bits (68), Expect = 4.8
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 851 PRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDP 896
P P + T P P P S DPR P PP P +P P
Sbjct: 54 PLPGTTATQPPPVVLTPWS-DPRLPDPPHLPDPQTHSATAHRNPHP 98
Score = 29.7 bits (67), Expect = 6.0
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPA 885
+ T P P P S DPR P PP P +P P P SP A
Sbjct: 57 GTTATQPPPVVLTPWS-DPRLPDPPHLPDPQTHSATAHRNPHP----PLNSPARIA 107
Score = 29.7 bits (67), Expect = 6.8
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
T+PPP P + PP + P + R P P +
Sbjct: 61 TQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSPAR 105
Score = 29.3 bits (66), Expect = 9.7
Identities = 13/61 (21%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 504 TRPPPPPPPPPTTPAPPVCYPGSND-PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P P T P P V P S+ P P +P P P +
Sbjct: 50 GELVPLPGTTATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSPARIAHV 109
Query: 563 P 563
Sbjct: 110 H 110
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 39.1 bits (91), Expect = 0.011
Identities = 27/92 (29%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPP-PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P PPP PG P P S TP P V + P +P PP
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P PPV P PPPQ
Sbjct: 239 SIPAPPIPPV---------IQYVAPPPVPPPQ 261
Score = 39.1 bits (91), Expect = 0.011
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
R P P P PG P + P + P V + P P +P
Sbjct: 178 RGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPP 237
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS---NDPRCPRPTP 536
+ PAP + + PPP PP P P+ + + P PR P
Sbjct: 238 ASIPAPPI--------PPVIQYVAPPPVPPPQPIIPIQHIRAVTGETPANPRDIP 284
Score = 37.2 bits (86), Expect = 0.047
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 337 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPP 396
P PPP PG P P + ++TP P V + P +P
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSA---SSTPGNRLPRVSFNPFLPGPSPAQPSA 235
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 430
PP P PP I Y P P PPP P
Sbjct: 236 PPASIPAP---PIPPVIQYVAPP----PVPPPQP 262
Score = 34.5 bits (79), Expect = 0.26
Identities = 27/93 (29%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 276 GLKITTPRPTTQPPPICYPGSPDPRCPRPP-PSPTPTTTPAPICYPGSNDPRCPTRPPPP 334
G P PPP PG P P S TP + + P +P P
Sbjct: 177 GRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 367
P P PP I Y P P PPP P
Sbjct: 237 PASIPAP---PIPPVIQYVAPP----PVPPPQP 262
Score = 32.6 bits (74), Expect = 1.2
Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 294 PGSPDPRCPRPPPSPTP---TTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 350
PG+ P P P P + P+ PG+ PR P P P P P P
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPA 242
Query: 351 CYPGSPDPRCPRPPPSPTPTTTPTT 375
PP P P
Sbjct: 243 PPIPPVIQYVAPPPVPPPQPIIPIQ 267
Score = 31.4 bits (71), Expect = 2.8
Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 321 GSNDPRCPTRPPPPPPP-------PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 373
G N P PPP P P ++ P S +P P P P+
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238
Query: 374 TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTT 408
+ PAP + P PPP PPP P
Sbjct: 239 SIPAPPI------PPVIQYVAPPPVPPPQPIIPIQ 267
Score = 29.9 bits (67), Expect = 6.5
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 568 PGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPS 627
P P PPS P S+ P P S +P P P P QPS
Sbjct: 180 GNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRV-----SFNPFLPGPSPAQPS 234
Query: 628 PTPLCYPGSPDPRCPRPPSPSPTPTCYPGSP 658
P P P P + +P P P P P
Sbjct: 235 APPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265
Score = 29.9 bits (67), Expect = 7.1
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 496 GSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPR 555
G + P PPP P + + S+ P P + P +L P P P
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNP----FLPGPSPAQPS 234
Query: 556 PLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P+S P P P P P P
Sbjct: 235 APPASIPAPPIPPVIQYVAPPPVPPPQP 262
Score = 29.9 bits (67), Expect = 7.2
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
PPPP P + +P R PR +P PG + + +PP
Sbjct: 188 PPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFL---------PGPSPAQPSAPPA 238
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
+ P P PP + Y P P PPP P
Sbjct: 239 SIPAP-PIPPVIQYVAPP----PVPPPQP 262
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 38.8 bits (90), Expect = 0.012
Identities = 51/235 (21%), Positives = 65/235 (27%), Gaps = 8/235 (3%)
Query: 295 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 354
D P P A N P P P P + P
Sbjct: 42 FHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQ 101
Query: 355 SPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPIC 414
P + P PTP P P P P +P PPP P + Q PP
Sbjct: 102 LPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQ--YQSPP-- 157
Query: 415 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDP 474
P+ + PP + YP + + S PP P P++ Y G+P
Sbjct: 158 ----QQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPS 213
Query: 475 RCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDP 529
+ PP P+P P S P PP PP
Sbjct: 214 QQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSV 268
Score = 34.5 bits (79), Expect = 0.20
Identities = 40/173 (23%), Positives = 49/173 (28%), Gaps = 12/173 (6%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
+ +Q PP S P PT P P S P + P P P
Sbjct: 86 QQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPP 145
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP 401
+ Q PP P P A P P PP
Sbjct: 146 QVPQQQQ-----------YQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPY-QPQSYPP 193
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
P P++ Y G+P + PP P+P P P S P PPP
Sbjct: 194 NEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPP 246
Score = 34.1 bits (78), Expect = 0.29
Identities = 48/244 (19%), Positives = 65/244 (26%), Gaps = 11/244 (4%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
D P Q P +P P+ P+P P+ P
Sbjct: 42 FHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQ 101
Query: 381 CYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPIC 440
P P +P P P P QPPP P + P+ P P +P
Sbjct: 102 -LPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQ- 159
Query: 441 YPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDP 500
P P P V + P P+ + P S
Sbjct: 160 ---------PQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGA 210
Query: 501 RCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSS 560
+ PP P P P P S P +P P+ Y G P + +S
Sbjct: 211 PPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVAS 270
Query: 561 PSPP 564
+P
Sbjct: 271 YAPQ 274
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 38.1 bits (89), Expect = 0.016
Identities = 27/151 (17%), Positives = 36/151 (23%), Gaps = 37/151 (24%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG-SPDPRCPRPPPSPT----------- 368
G+ + + T P I P SP P PP +P
Sbjct: 90 GNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNI 149
Query: 369 ---------------------PTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPT 407
+T PT PA + G+ P P PP P T +P
Sbjct: 150 SDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPA 209
Query: 408 TQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
+ P P A
Sbjct: 210 VNHH----KTATVAVPPATSGKPKSGAASAR 236
Score = 30.8 bits (70), Expect = 3.4
Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 5/69 (7%)
Query: 306 PSPTPTTTPAPICYPGSNDPRCPTRPPP-PPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
+ T T PA + P PP P T +P + P
Sbjct: 170 NTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHK----TATVAVPPATS 225
Query: 365 PSPTPTTTP 373
P
Sbjct: 226 GKPKSGAAS 234
Score = 30.0 bits (68), Expect = 5.3
Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 21/132 (15%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP--------VCYPG------- 470
P + + + P+ S PP +P PT PP + PG
Sbjct: 95 PSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNISDALS 154
Query: 471 ------SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYP 524
+ + + S PT PA + G+ P P PP P T +
Sbjct: 155 QQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHK 214
Query: 525 GSNDPRCPRPTP 536
+ P +
Sbjct: 215 TATVAVPPATSG 226
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 38.8 bits (90), Expect = 0.017
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 359
P PPPPPPPP P+ PPP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP------PPPG 31
Score = 38.8 bits (90), Expect = 0.017
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
P PPPPPPPP P+ PPP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP------PPPG 31
Score = 35.0 bits (80), Expect = 0.26
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 24/50 (48%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPR 552
P PPPPPPPP P P+ PPPP P P
Sbjct: 6 PGNPPPPPPPPGFEP------------------PSQPPPP------PPPG 31
Score = 33.0 bits (75), Expect = 0.97
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 367
PP PPPP PPP PG P P PPP P
Sbjct: 5 PPGNPPPP--------PPP---PGFEPPSQPPPPPPP 30
Score = 33.0 bits (75), Expect = 0.97
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 430
PP PPPP PPP PG P P PPP P
Sbjct: 5 PPGNPPPP--------PPP---PGFEPPSQPPPPPPP 30
Score = 32.6 bits (74), Expect = 1.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 19/44 (43%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPP 337
PG+P P P PPP P P++PPPPPPP
Sbjct: 6 PGNPPP--PPPPPGFEP-----------------PSQPPPPPPP 30
Score = 32.6 bits (74), Expect = 1.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 19/44 (43%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
PG+P P P PPP P P++PPPPPPP
Sbjct: 6 PGNPPP--PPPPPGFEP-----------------PSQPPPPPPP 30
Score = 31.9 bits (72), Expect = 2.0
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 23/48 (47%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
PG+P PPP P P P P++PPPPPPP
Sbjct: 6 PGNP------PPPPPPPGFEP-----------------PSQPPPPPPP 30
Score = 31.5 bits (71), Expect = 2.8
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 14/40 (35%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P PPPPPPP PG P P P PPPP
Sbjct: 5 PPGNPPPPPPP----------PGFEPPSQPPP----PPPP 30
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 38.0 bits (88), Expect = 0.020
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC--PTRPPPPPPPPPTTPAP 519
P P +P P P +P AP P + P+ P R P P
Sbjct: 18 APAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLED 77
Query: 520 PVCYP 524
V P
Sbjct: 78 FVVEP 82
Score = 36.4 bits (84), Expect = 0.069
Identities = 15/63 (23%), Positives = 16/63 (25%), Gaps = 11/63 (17%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
P P+P PAP P P P P P PR
Sbjct: 16 QPAPAPPSPAAAPAP-----------PPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRE 64
Query: 362 RPP 364
R P
Sbjct: 65 RKP 67
Score = 36.0 bits (83), Expect = 0.085
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 348 PPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC--PTRPPPPPPPPT 402
P P SP PPP+ T AP P + P+ P R P P
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Score = 35.3 bits (81), Expect = 0.15
Identities = 15/64 (23%), Positives = 17/64 (26%), Gaps = 12/64 (18%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P+P P + PAP P P P P P PR
Sbjct: 16 QPAPAPPSPAAAPAP------------PPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRR 63
Query: 424 PRPP 427
R P
Sbjct: 64 ERKP 67
Score = 34.9 bits (80), Expect = 0.18
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P P+P PAP + +P P P P PR R P
Sbjct: 16 QPAPAPPSPAAAPAP-----PPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70
Query: 484 TPTTPAPLVCYP 495
+ V P
Sbjct: 71 SLWKLEDFVVEP 82
Score = 34.1 bits (78), Expect = 0.30
Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 14/72 (19%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPR 530
+ PPSP P P P AP P + P+
Sbjct: 12 GEAEQPAPAPPSPAAAPAPP--------------PPAKTAAPATKAAAPAAAAPRAEKPK 57
Query: 531 CPRPTPTTPPPP 542
+P P P
Sbjct: 58 KDKPRRERKPKP 69
Score = 34.1 bits (78), Expect = 0.38
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 287 QPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC--PTRPPPPPPPPT 339
P P +P P P +P P + P+ P R P P
Sbjct: 18 APAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Score = 34.1 bits (78), Expect = 0.39
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P P P +P PPP +P + P + P + PR P
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKK------DKPRRERKP 67
Score = 34.1 bits (78), Expect = 0.39
Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 23/82 (28%)
Query: 504 TRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSP 563
+P P PP P PAPP P T P++ +P
Sbjct: 15 EQPAPAPPSPAAAPAPPP----------PAKTAAPATKA-------------AAPAAAAP 51
Query: 564 PVCYPGSPDPRCPRPPSPTPEY 585
P PR R P P +
Sbjct: 52 RAEKPKKDKPRRERKPKPASLW 73
Score = 33.0 bits (75), Expect = 0.83
Identities = 10/51 (19%), Positives = 13/51 (25%)
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA 437
PPPP P P P + P+ +P P
Sbjct: 22 PSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Score = 32.6 bits (74), Expect = 0.94
Identities = 10/51 (19%), Positives = 13/51 (25%)
Query: 324 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPT 374
PPPP P P P + P+ +P P
Sbjct: 22 PSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Score = 32.6 bits (74), Expect = 0.95
Identities = 17/68 (25%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 821 KKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPS-PTTPAPPQCYPGSPDPRCPRPPL 879
KK F P P P P P P + PA P PR
Sbjct: 6 KKIFGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER 65
Query: 880 SPTTPAPP 887
P PA
Sbjct: 66 KP-KPASL 72
Score = 32.2 bits (73), Expect = 1.3
Identities = 18/73 (24%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPP 337
KI QP P P SP PPP+ T P P
Sbjct: 7 KIFGKGEAEQPAPA--PPSPAAAPAPPPPAKTAAPATKA-------AAPAAAAPRAEKPK 57
Query: 338 PTTPRPTTQPPPI 350
PR +P P
Sbjct: 58 KDKPRRERKPKPA 70
Score = 29.9 bits (67), Expect = 8.0
Identities = 10/51 (19%), Positives = 11/51 (21%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P P P P P T P + P P P
Sbjct: 17 PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP 67
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 38.2 bits (89), Expect = 0.021
Identities = 9/48 (18%), Positives = 12/48 (25%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P P P T + + P P PP+ P
Sbjct: 272 PATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319
Score = 35.8 bits (83), Expect = 0.10
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
P P P T + + P PPP+P P T P PA
Sbjct: 272 PATAAPAPSRMTDTNDSKSVTS---QPAAAAAAPAPPPNP-PATPPEPPAR 318
Score = 33.9 bits (78), Expect = 0.46
Identities = 11/56 (19%), Positives = 13/56 (23%), Gaps = 15/56 (26%)
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
R S + T+ P A P PPP P P
Sbjct: 279 PSRMTDTNDSKSVTSQPAAAAA---------------APAPPPNPPATPPEPPARR 319
Score = 33.9 bits (78), Expect = 0.48
Identities = 11/52 (21%), Positives = 13/52 (25%), Gaps = 11/52 (21%)
Query: 298 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 349
R S + T+ PA P PPP P P
Sbjct: 279 PSRMTDTNDSKSVTSQPAA-----------AAAAPAPPPNPPATPPEPPARR 319
Score = 33.5 bits (77), Expect = 0.63
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 464 PPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
P + P R + + ++ P PP PP PP PA
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAA----PAPPPNPPATPPEPPARR 319
Score = 33.2 bits (76), Expect = 0.71
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 19/71 (26%)
Query: 420 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRP 479
D +P P+ ND + + P PPP
Sbjct: 267 DAAAQPATAAPAPSRMTDT------NDSKSVTSQPAAAAAAPAPPP-------------N 307
Query: 480 PPSPTPTTPAP 490
PP+ P PA
Sbjct: 308 PPATPPEPPAR 318
Score = 31.2 bits (71), Expect = 3.2
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPT 374
P + T+QP + P P PP+ P
Sbjct: 274 TAAPAPSRMTDTNDSKSVTSQPA----AAAAAPAPPPNPPATPPEPPAR 318
Score = 30.8 bits (70), Expect = 3.4
Identities = 10/40 (25%), Positives = 11/40 (27%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P+R T P P P TP PP
Sbjct: 279 PSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318
Score = 30.5 bits (69), Expect = 5.5
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 294 PGSPDPRCPRPP-PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 349
P + P R + + + T P P PPP P +PP
Sbjct: 272 PATAAPAPSRMTDTNDSKSVTSQP-----------AAAAAAPAPPPNPPATPPEPPA 317
Score = 29.7 bits (67), Expect = 7.7
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
P + + + P P PP TP P
Sbjct: 279 PSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATP-PEPPARR 319
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 37.6 bits (87), Expect = 0.025
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 5/101 (4%)
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP--TTPRPTTQPPPVCYPGSPDPRCPRP 479
R S + ++ P + P S S P T+ + R
Sbjct: 24 RLSSSFLSTSASSRPRRLNAPAS---PPSSSPARNTSSSSSFGLSKQRPSSLSRGRLSSR 80
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
SP+ +P+ GS + P TT +
Sbjct: 81 FVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121
Score = 37.2 bits (86), Expect = 0.030
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 13/110 (11%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
+ + + P N P + P P T+ + R
Sbjct: 25 LSSSFLSTSASSRPR---RLNAP--ASPPSSSPARNTSSSSSFGLSKQRPSSLSRGRLSS 79
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
SP+ + S + T P+ R TT
Sbjct: 80 RFVSPSRGSPSAAA--------SLNGSLATASTSGSSSPSRSRRTTSSDL 121
Score = 34.9 bits (80), Expect = 0.17
Identities = 18/98 (18%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
R S T+ + P L N P + P P T+ +
Sbjct: 24 RLSSSFLSTSASSRPRRL------NAP--ASPPSSSPARNTSSSSSFGLSKQRPSSLSRG 75
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
R SP+ + A GS S + R
Sbjct: 76 RLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRS 113
Score = 29.9 bits (67), Expect = 6.1
Identities = 16/103 (15%), Positives = 20/103 (19%)
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRP 506
+ RP P P S R S + P G R +
Sbjct: 26 SSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGLSKQRPSSLSRGRLSSRFVSPS 85
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSP 549
P + S R TT G
Sbjct: 86 RGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSGNGPS 128
Score = 29.9 bits (67), Expect = 6.3
Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 9/83 (10%)
Query: 272 DDGKGLKITTPRPTTQPPPICYP-----GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 326
+ R T+ R SP+ + A S +
Sbjct: 43 APASPPSSSPARNTSSSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSA----AASLNGS 98
Query: 327 CPTRPPPPPPPPTTPRPTTQPPP 349
T P+ R TT
Sbjct: 99 LATASTSGSSSPSRSRRTTSSDL 121
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 36.9 bits (86), Expect = 0.025
Identities = 28/114 (24%), Positives = 31/114 (27%), Gaps = 13/114 (11%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P+ R P P T TQPP P P P TP
Sbjct: 45 PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE---- 100
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P P PP P +P P P P+P P P AP
Sbjct: 101 ---------PAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
Score = 32.3 bits (74), Expect = 0.80
Identities = 18/68 (26%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRP--PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P+ P V P +P P P PP P P P P P P P
Sbjct: 78 GDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKP 137
Query: 512 PPPTTPAP 519
AP
Sbjct: 138 VVEEKAAP 145
Score = 30.4 bits (69), Expect = 3.2
Identities = 22/90 (24%), Positives = 24/90 (26%), Gaps = 23/90 (25%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
S DP T PP P P P P P P P P P AP
Sbjct: 82 APSLDP--ATVAPPNTPVEPEPAPVEPPKPK----------PVEKPKPKPKPQQKVEAPP 129
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQ 409
+P P P PT +
Sbjct: 130 -----------APKPEPKPVVEEKAAPTGK 148
Score = 30.4 bits (69), Expect = 3.2
Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
PS P T P + P P PP P +P P P P+P
Sbjct: 81 AAPSLDPATVAPP-------NTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP 133
Query: 364 PPSPTPTTTP 373
P P
Sbjct: 134 EPKPVVEEKA 143
Score = 30.0 bits (68), Expect = 4.9
Identities = 20/91 (21%), Positives = 22/91 (24%), Gaps = 7/91 (7%)
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
P T TQPP P P P + P PP P
Sbjct: 57 PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPN-------TPVEPEPAPVEPPKP 109
Query: 513 PPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P P P P P P +
Sbjct: 110 KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVE 140
Score = 29.6 bits (67), Expect = 6.4
Identities = 28/129 (21%), Positives = 35/129 (27%), Gaps = 24/129 (18%)
Query: 338 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP 397
P P+P + P P + +PP A S DP T PP
Sbjct: 42 PLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAA-----PSLDP--ATVAPPN 94
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P P P P P P + P+P P P P P P
Sbjct: 95 TPVEPEPAPVEPPKP-----KPVEK-PKPKPKPQQKVEAPP-----------APKPEPKP 137
Query: 458 RPTTQPPPV 466
+ P
Sbjct: 138 VVEEKAAPT 146
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.1 bits (88), Expect = 0.026
Identities = 90/384 (23%), Positives = 119/384 (30%), Gaps = 45/384 (11%)
Query: 288 PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 347
P I +P P PR TPTT + R P P +T
Sbjct: 103 TPSIAMENTPSP--PRRTAKITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSG 160
Query: 348 PPICYPGSPDPRCPRPPPSPTPTTTPT---TPAPLVCYPGSNDPRCPTRPPPPPPPPTTP 404
+P PR SPT T TP+PL S P T P TP
Sbjct: 161 RQRVKSYTPKPRGEVKSSSPTQTREKVRKYTPSPLGRMVNSYAP--STFMTMPRSHGITP 218
Query: 405 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP 464
R T + I + P TTP P+ N P + T T+
Sbjct: 219 RTTVKDSEIT--ATYKMLETNPSKRTAGKTTPTPLKGMTDNTPTFLTREVETDLLTS--- 273
Query: 465 PVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYP 524
P PR S + T LV G ++ P TPA
Sbjct: 274 PRSVVEKNTLTTPRRVESNSSTNHWGLV---GKNNLTTPQGTVLEH-----TPA------ 319
Query: 525 GSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
+++ + T P + + + PL + +P V + + PS P
Sbjct: 320 -TSEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPS 378
Query: 585 YVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRP 644
PR R TTQ V + + P P P PS T +P +P
Sbjct: 379 -----TPATPRV-RAVLTTQ---VHHCVVVKPAPAVPTTPSPSLTTALFPEAPS------ 423
Query: 645 PSPSPTPTCYPGSPDPRCRPSVPP 668
PSPS P PG PD + PP
Sbjct: 424 PSPSALP---PGQPDLHPKAEYPP 444
Score = 30.3 bits (68), Expect = 6.4
Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRC-PRPPPSPTPTTTPAPICYPGSNDPRC------PTR 330
KI P T P + + P +P+ TP + C P
Sbjct: 346 KIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPATPRVRAVLTTQVHHCVVVKPAPAV 405
Query: 331 PPPPPPPPTT---PRPTTQPPPICYPGSPD--PRCPRPP 364
P P P TT P + P PG PD P+ PP
Sbjct: 406 PTTPSPSLTTALFPEAPSPSPSALPPGQPDLHPKAEYPP 444
Score = 30.0 bits (67), Expect = 7.6
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 829 RTPSPTTPAPP-QCYPGSPDPRCPRPPPSPTTPAPPQ--CYPGSPDPRC---PRPPLSPT 882
R P T AP + + P +P+TPA P+ + C P PT
Sbjct: 348 RNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPATPRVRAVLTTQVHHCVVVKPAPAVPT 407
Query: 883 TPAPPQC---YPGSPDP 896
TP+P +P +P P
Sbjct: 408 TPSPSLTTALFPEAPSP 424
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 37.8 bits (87), Expect = 0.030
Identities = 64/346 (18%), Positives = 83/346 (23%), Gaps = 20/346 (5%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P TT P PT T D +R P T+P
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSP 502
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPP---PP 398
P P P + SPTP T G+ T P P
Sbjct: 503 TPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESP 562
Query: 399 PPPTTPRPTTQPPPI----CYPGSPDPRCP--RPPPSPTPTTTPAPICYPGSNDPRCPSP 452
T T P + G P ++ P S P S
Sbjct: 563 VNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSA 622
Query: 453 PPTTPRPTTQ-PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
PT T+ P V P P P T P S P P
Sbjct: 623 HPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNS-STSRYPGEVHVTEGMPN 681
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSP 571
P T+P+ P + + PT T+ +SP +
Sbjct: 682 PNATSPSAP------SGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTT 735
Query: 572 DPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPR 617
P+ P PP TT++ V P + P
Sbjct: 736 PYNATTYLPPSTSSKLRPRWTF---TSPPVTTKQATVPVPPTQHPD 778
Score = 37.1 bits (85), Expect = 0.054
Identities = 56/297 (18%), Positives = 73/297 (24%), Gaps = 21/297 (7%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
P T + +P P+ P T P PT+
Sbjct: 425 APDTTKSVIFVYTLVHVEPHKTTAVPTTPSL-------------PPASTGPTVSTADPTS 471
Query: 341 PRPT-TQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
PT T + SP R P+ + TP P P + P P
Sbjct: 472 GTPTGTTSSTLPEDTSPTSRTTSATPN-ATSPTPAVTTPNATSPTTQKTSDTPNATSPTP 530
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPP-SPTPTTTPAPICYPGSNDPRCPSPPPTTPR 458
T PP P+ P+ SP T + S S T
Sbjct: 531 IVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSV---LTSAVTTGQH 587
Query: 459 PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT-- 516
T P PG P P + T TTP +P + P P +T
Sbjct: 588 GTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLS 647
Query: 517 PAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDP 573
P P T P G P+P P S +
Sbjct: 648 PGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTG 704
Score = 34.4 bits (78), Expect = 0.29
Identities = 44/238 (18%), Positives = 52/238 (21%), Gaps = 8/238 (3%)
Query: 368 TPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 427
T V +P T P P P T G+P
Sbjct: 423 HKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTL 482
Query: 428 PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT 487
P T T+ P + P P PTTQ S P P P T
Sbjct: 483 PEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKT------SDTPNATSPTPIVIGVT 536
Query: 488 PAPLVCYPGSSDPRCPTRPPPPPPPP-PTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYL 546
G++ T P P T P V S
Sbjct: 537 TTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQ 596
Query: 547 GSPDPRCPRPLPSSPSPPVCYP-GSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTT 603
P P S S S P + V + P P P T
Sbjct: 597 QPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT 654
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 37.8 bits (88), Expect = 0.033
Identities = 28/212 (13%), Positives = 42/212 (19%), Gaps = 18/212 (8%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPP----PPP 338
+ + P + S + PP T AP G P P
Sbjct: 49 KNRKKMPKVFQKSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPES 108
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP 398
+ + RP P ++ N RPP
Sbjct: 109 SPSARRLTRSEGVARHEMEDLAGRPVVKPDA--DRQLRQDIL-----NKSSSSRRPPVSK 161
Query: 399 PPPT-TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
T + P T R + + + P+ PP
Sbjct: 162 EEGTSSKMPATALAS---AALFKDDEIRQEVDAARSDQASQ-SRLSRSRGNPPAIPPDAA 217
Query: 458 RPTTQPPPVC--YPGSPDPRCPRPPPSPTPTT 487
D R +P T
Sbjct: 218 PRQPMLTRSAGGRFEGEDENLERNLQPQSPIT 249
Score = 37.1 bits (86), Expect = 0.051
Identities = 25/203 (12%), Positives = 35/203 (17%), Gaps = 8/203 (3%)
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP 401
+ + P + S + PP T + P
Sbjct: 49 KNRKKMPKVFQKSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPES 108
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT-TTPAPICYPGSNDPRCPSPPPTT---P 457
+ + RP P I S+ R P
Sbjct: 109 SPSARRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSK 168
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
P T + R + S P PP P P
Sbjct: 169 MPATALASAALFKDDEIRQEVDAARSDQASQ----SRLSRSRGNPPAIPPDAAPRQPMLT 224
Query: 518 APPVCYPGSNDPRCPRPTPTTPP 540
D R P
Sbjct: 225 RSAGGRFEGEDENLERNLQPQSP 247
Score = 35.5 bits (82), Expect = 0.14
Identities = 44/282 (15%), Positives = 57/282 (20%), Gaps = 45/282 (15%)
Query: 370 TTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT------PRPTTQPPPICYPGSPDPRC 423
T T T P P + + + P + S +
Sbjct: 8 TATKTAVQPEATPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSSAPRQI 67
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
PP T AP G PT P D P SP
Sbjct: 68 QAAPPQALNPTAAAPQSSRG----------PTLRELLALP-------EDDGETQAPESSP 110
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCY-------PGSNDPRCPRPTP 536
+ RP P + P S + P
Sbjct: 111 SARRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMP 170
Query: 537 TTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRC 596
T + R + R PP+ P PR
Sbjct: 171 ATALASAALFKDDEIRQE-VDAARSD-QASQSRLSRSR-GNPPAI-------PPDAAPRQ 220
Query: 597 PRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPD 638
P + + D R PQ SP L G D
Sbjct: 221 PMLTRSAGGRFE----GEDENLERNLQPQ-SPITLDKKGKLD 257
>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP). This entry
represents proteins encoded by genes which are always
found in type III secretion operons, although their
function in the processes of secretion and virulence is
unclear. Hpa stands for Hrp-associated gene, where Hrp
stands for hypersensitivity response and virulence. see
also PMID:18584024.
Length = 185
Score = 36.3 bits (84), Expect = 0.037
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 828 YRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCP 875
R P TPAPP + RP +P PAPP+ G DP+
Sbjct: 24 ARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRATDGDRDPQPL 71
Score = 33.2 bits (76), Expect = 0.32
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 833 PTTPAPPQCYPGSPDPRCPRPPPS---PTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P AP R R P TPAPP + RP +P PAPP+
Sbjct: 2 PAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRA 61
Query: 890 YPGSPDP 896
G DP
Sbjct: 62 TDGDRDP 68
Score = 32.8 bits (75), Expect = 0.43
Identities = 19/70 (27%), Positives = 21/70 (30%)
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC 544
P AP R R PP P P P PR P P PP+
Sbjct: 2 PAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRA 61
Query: 545 YLGSPDPRCP 554
G DP+
Sbjct: 62 TDGDRDPQPL 71
Score = 32.4 bits (74), Expect = 0.65
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC--YLGSPDPRCPRPLPSSPSPP 564
P P + Y P TP PP P PR P+ P+PP
Sbjct: 2 PAGAAPRAARRSFD--YARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPP 59
Query: 565 VCYPGSPDPRCP 576
G DP+
Sbjct: 60 RATDGDRDPQPL 71
Score = 30.1 bits (68), Expect = 3.3
Identities = 18/78 (23%), Positives = 19/78 (24%), Gaps = 8/78 (10%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
P P R R P TPAP P P P P
Sbjct: 2 PAGAAPRAARRSFDYARLMRRAARAGPPGTPAP--------PGPAEDAHPEFPERPRDAP 53
Query: 344 TTQPPPICYPGSPDPRCP 361
PP G DP+
Sbjct: 54 APPAPPRATDGDRDPQPL 71
Score = 29.3 bits (66), Expect = 5.7
Identities = 18/87 (20%), Positives = 19/87 (21%), Gaps = 17/87 (19%)
Query: 338 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP 397
P P Y PP TPAP P P
Sbjct: 2 PAGAAPRAARRSFDYARLMRRAARAGPP--------GTPAP---------PGPAEDAHPE 44
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCP 424
P P PP G DP+
Sbjct: 45 FPERPRDAPAPPAPPRATDGDRDPQPL 71
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 37.2 bits (86), Expect = 0.038
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 284 PTTQPPPICYPGSPD-PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
PT P + GSP P P S + D T PPPPP P
Sbjct: 7 PTAGSPLRSHIGSPSKPVVGSTPFSRSRIPAAV--------DSADETSMAPPPPPSPLPL 58
Query: 343 PTTQPPPICYP 353
P + YP
Sbjct: 59 LKVSPNSLQYP 69
Score = 37.2 bits (86), Expect = 0.043
Identities = 16/54 (29%), Positives = 20/54 (37%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 416
SP+ +TP P + D T PPPPP P P + YP
Sbjct: 16 HIGSPSKPVVGSTPFSRSRIPAAVDSADETSMAPPPPPSPLPLLKVSPNSLQYP 69
Score = 32.2 bits (73), Expect = 1.3
Identities = 18/74 (24%), Positives = 20/74 (27%), Gaps = 14/74 (18%)
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
PT P P P S + P + D T PPPP
Sbjct: 6 LPTAGSPLRSHIG----SPSKPVVGSTPFSRSRI--------PAAVDSADET-SMAPPPP 52
Query: 513 PPTTPAPPVCYPGS 526
P P V P S
Sbjct: 53 PSPLPLLKVS-PNS 65
Score = 32.2 bits (73), Expect = 1.5
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 406 PTTQPPPICYPGSPD-PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP 464
PT P + GSP P P S + PA + P PP P P
Sbjct: 7 PTAGSPLRSHIGSPSKPVVGSTPFSRS--RIPAAVDSADETSMAPPPPPSPLPLLKVSPN 64
Query: 465 PVCYP 469
+ YP
Sbjct: 65 SLQYP 69
Score = 31.8 bits (72), Expect = 2.0
Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
PT P + GSP P +P + P PP P P
Sbjct: 7 PTAGSPLRSHIGSPSK--PVVGSTPFSRSRIPAAVDSA----DETSMAPPPPPSPLPLLK 60
Query: 403 TPRPTTQPPPICYPGSPD 420
+ Q P P+
Sbjct: 61 VSPNSLQYPAGYLGAVPE 78
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 35.9 bits (83), Expect = 0.053
Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 8/104 (7%)
Query: 420 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRP 479
+ P+P T P + PR P PP P
Sbjct: 107 EKVLGEEEPAPQEETVADP---IQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVE 163
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCY 523
P + P + P + + PP P PPPP P P
Sbjct: 164 EPVDSMAIAVPAIDTPVTLEL-----PPAPQPPPPVVPQPSTMV 202
Score = 34.8 bits (80), Expect = 0.13
Identities = 21/105 (20%), Positives = 25/105 (23%), Gaps = 9/105 (8%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
+ + PR RP P P PP P P P
Sbjct: 108 KVLGEEEPAPQEETVADPIQALQPR--PRPDVEEVLVPAAPEPPSYEE----TIKPGPAP 161
Query: 537 TTPPPPQCYLGSPDPRCPR--PLPSSPSPPV-CYPGSPDPRCPRP 578
P + P P LP +P PP P R
Sbjct: 162 VEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206
Score = 33.6 bits (77), Expect = 0.30
Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 298 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 357
+ P+P T P + PR P P +PP +
Sbjct: 107 EKVLGEEEPAPQEETVADP---IQALQPR-----PRPDVEEVLVPAAPEPPSY-----EE 153
Query: 358 PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 410
P P P P + P + P + + P P PPPP P+P+T
Sbjct: 154 TIKPGPAPVEEPVDSMAIAVPAIDTPVTLEL----PPAPQPPPPVVPQPSTMV 202
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 36.5 bits (84), Expect = 0.064
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 288 PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP--RPTT 345
P P PGS + +P P +P PA P N TRP P P P P P T
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENP---GTRPNPEPDPDLNPDANPDT 371
Query: 346 QPPPICYPGSP 356
P P SP
Sbjct: 372 DGQPGTRPDSP 382
Score = 34.6 bits (79), Expect = 0.23
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 410 PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT-----TPRPTTQPP 464
P P PGS + +P P +P PA P N P+P P P T
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374
Query: 465 PVCYPGSP 472
P P SP
Sbjct: 375 PGTRPDSP 382
Score = 29.6 bits (66), Expect = 8.4
Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGS-----PDPR---CPRPPPSPTPTTTPAPICYPGSN 445
P P P + P QP P P P+PR RP P P P P
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374
Query: 446 DPRCPSPPPTTPRP 459
P P RP
Sbjct: 375 PGTRPDSPAVPDRP 388
Score = 29.6 bits (66), Expect = 8.4
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGS-----PDPR---CPRPPPSPTPTTTPTTPAPLVCY 382
P P P + P QP P P P+PR RP P P P P
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374
Query: 383 PGS--NDPRCPTRP 394
PG+ + P P RP
Sbjct: 375 PGTRPDSPAVPDRP 388
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 36.2 bits (84), Expect = 0.065
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 9/94 (9%)
Query: 538 TPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCP 597
P+ D SSPSPP P P P S + P + R
Sbjct: 296 NGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHS----PPAAFERPL 351
Query: 598 RPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPL 631
P + G + + + + + PL
Sbjct: 352 ALSPKRKR-----EGDKKQKKKKSKKLKLTFNPL 380
Score = 33.1 bits (76), Expect = 0.66
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 516 TPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRC 575
P +D + ++P PP P P P S SPP +
Sbjct: 296 NGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAF-------- 347
Query: 576 PRPPSPTP 583
RP + +P
Sbjct: 348 ERPLALSP 355
Score = 30.4 bits (69), Expect = 4.6
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 496 GSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPR 555
SD P PP T+ + P P P + PP + R
Sbjct: 305 SVSDRPRHLSSDSSPSPPDTSDSDP-------STETPPPASLSHSPPAAF--------ER 349
Query: 556 PLPSSPS 562
PL SP
Sbjct: 350 PLALSPK 356
Score = 29.3 bits (66), Expect = 9.3
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
+ D P PT + + S+D P PP + T PPP S
Sbjct: 288 NADSSVEANGVEPEPTGSVSDRPRHLSSD-----SSPSPPDTSDSDPSTETPPPASLSHS 342
Query: 356 PDPRCPRPPPSPT 368
P RP
Sbjct: 343 PPAAFERPLALSP 355
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 36.4 bits (84), Expect = 0.065
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP--RPTTQPPPICYPGSPDPRCPR 362
PP+ TPT+ P P + P P P P+ + P SP P
Sbjct: 86 PPAATPTSAPTP----TPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPS 141
Query: 363 PPPSPTPT 370
T
Sbjct: 142 SGSDAAST 149
Score = 35.6 bits (82), Expect = 0.10
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPP 337
K T PP P S P PP SP + AP + + + P+
Sbjct: 76 KPKTGTGKVAPPAAT-PTSAPTPTPSPPASPASGMSAAP---ASAVEEKSPSEESATATA 131
Query: 338 PTTPRPTTQPP 348
P +P +
Sbjct: 132 PESPSTSVPSS 142
Score = 35.3 bits (81), Expect = 0.12
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP--RPTTQPPPICYPGSPDP 421
PP+ TPT+ PT P + P P P P+ + P SP
Sbjct: 86 PPAATPTSAPT--------PTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPST 137
Query: 422 RCPRPPPSPTPT 433
P T
Sbjct: 138 SVPSSGSDAAST 149
Score = 35.3 bits (81), Expect = 0.15
Identities = 17/85 (20%), Positives = 22/85 (25%), Gaps = 14/85 (16%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
+P PA P P P PP + P S
Sbjct: 76 KPKTGTGKVAPPAA-------TPTSAPTPTPSPPASPASGMSAAPASAVEEKS------- 121
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSND 387
P T P +P+ V GS+
Sbjct: 122 PSEESATATAPESPSTSVPSSGSDA 146
Score = 34.5 bits (79), Expect = 0.25
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
PP P + P PT PP SP P S +P+ + P S P
Sbjct: 86 PPAATPTSAPTPTPSPPA-----SPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
Query: 392 TRPP 395
+
Sbjct: 141 SSGS 144
Score = 32.6 bits (74), Expect = 0.89
Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 29/99 (29%)
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
P T PP P P+PTP+ +P S P +
Sbjct: 77 PKTGTGKVAPPAAT---------PTSAPTPTPSPPASP--------ASGMSAAPASAVEE 119
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSD 499
P + P +P+ V GS
Sbjct: 120 KSPS------------EESATATAPESPSTSVPSSGSDA 146
Score = 32.2 bits (73), Expect = 1.2
Identities = 16/81 (19%), Positives = 19/81 (23%), Gaps = 9/81 (11%)
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
T T PA P P P PP + P SP
Sbjct: 77 PKTGTGKVAPPAA--------TPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESAT 128
Query: 426 PP-PSPTPTTTPAPICYPGSN 445
P T+ P+ S
Sbjct: 129 ATAPESPSTSVPSSGSDAAST 149
Score = 32.2 bits (73), Expect = 1.2
Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
P T PP P S P PP SP A P S+
Sbjct: 77 PKTGTGKVAPPAAT-PTSAPTPTPSPPASPASGMSAA----PASAVEEKSPSEESATATA 131
Query: 514 PTTPAPPVCYPGSND 528
P +P+ V GS+
Sbjct: 132 PESPSTSVPSSGSDA 146
Score = 31.4 bits (71), Expect = 2.3
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
P P TP P+ P S P SP+ + A P S PS
Sbjct: 85 APPAATPTSAPTPTPSPPASPASGM-SAAPASAVEEKSPSEESATATA--PESPSTSVPS 141
Query: 452 PPP 454
Sbjct: 142 SGS 144
Score = 31.0 bits (70), Expect = 2.8
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 338 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP 397
P T PP P S P PP SP + AP + + + P+
Sbjct: 77 PKTGTGKVAPPAAT-PTSAPTPTPSPPASPASGMSA---AP----ASAVEEKSPSEESAT 128
Query: 398 PPPPTTPRPTTQPP 411
P +P +
Sbjct: 129 ATAPESPSTSVPSS 142
Score = 30.6 bits (69), Expect = 3.7
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 834 TTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGS 893
APP P S P PP SP + S P SP+ + P S
Sbjct: 82 GKVAPPAATPTSAPTPTPSPPASPASGM-------SAAPASAVEEKSPSEESATATAPES 134
Query: 894 PDP 896
P
Sbjct: 135 PST 137
Score = 29.9 bits (67), Expect = 6.2
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPP-PPPPPPPTTPAP 519
++P +P P P+PTP+ PA G S P T AP
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPA--SGMSAAPASAVEEKSPSEESATATAP 132
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 36.3 bits (84), Expect = 0.066
Identities = 22/147 (14%), Positives = 30/147 (20%), Gaps = 23/147 (15%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPA---PICYPGSNDPRCPTRPPPPPPPPTTPRP--TTQPP 348
G P R + +P++ A PI PTR P P + T + P
Sbjct: 148 LGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESP 207
Query: 349 PICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTT 408
T P P + + TPR
Sbjct: 208 S------------------NLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGE 249
Query: 409 QPPPICYPGSPDPRCPRPPPSPTPTTT 435
GS
Sbjct: 250 SFRSTPTSGSSSINPVSGLDEAEEDRI 276
Score = 35.5 bits (82), Expect = 0.12
Identities = 22/109 (20%), Positives = 27/109 (24%), Gaps = 10/109 (9%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
R P + T P S P R P S + + T P
Sbjct: 157 RDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPT--------TLESPS 208
Query: 390 CPTRPPPPPPPPT--TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
PPP + T R +T PR S T T
Sbjct: 209 NLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTS 257
Score = 35.1 bits (81), Expect = 0.17
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 2/115 (1%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
G P R + +P++ P S R + P P ++P
Sbjct: 148 LGPPLQHRKRDAVTASPSSM-IARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLES 206
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P + T PPP S S P S + P S +
Sbjct: 207 PSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLA-TPRSGESFRSTPTSGSS 260
Score = 34.3 bits (79), Expect = 0.25
Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
+ T P S P R P S + + SN + T PPP
Sbjct: 165 SSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPSN-LQVTT-DVPPPYSN 222
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTP 376
T R +T PR S T T +
Sbjct: 223 GTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSS 260
Score = 32.4 bits (74), Expect = 1.1
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPA---PICYPGSNDPRCPS---PPPTTPRPTTQPPPVCYP 469
G P R + +P++ A PI P+ P ++PR + P + P
Sbjct: 148 LGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESP 207
Query: 470 GSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
+ PPP T+ + + + P +TP
Sbjct: 208 SNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTS 257
Score = 29.3 bits (66), Expect = 9.4
Identities = 18/103 (17%), Positives = 24/103 (23%), Gaps = 3/103 (2%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP-RCPS 451
R P + T P S P R P S + + SN
Sbjct: 157 RDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPSNLQVTTDV 216
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT--PTTPAPLV 492
PPP + + P S +TP
Sbjct: 217 PPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGS 259
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 35.8 bits (82), Expect = 0.080
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRP-------PLSPT 882
TPS T PQ P S P+ P+ TTP + P P P SPT
Sbjct: 32 TPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSPT 91
Query: 883 TPAPP 887
T P
Sbjct: 92 TKQVP 96
Score = 35.4 bits (81), Expect = 0.096
Identities = 19/80 (23%), Positives = 27/80 (33%)
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
T TT A P S+ P PP P P S P+ TP P
Sbjct: 22 TTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSS 81
Query: 544 CYLGSPDPRCPRPLPSSPSP 563
+ +P + +P+ +P
Sbjct: 82 TKVETPQSPTTKQVPTEINP 101
Score = 33.1 bits (75), Expect = 0.66
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
+P+ T AP P S P P PP+T Q P +P P S
Sbjct: 32 TPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTP--NATTPSSTKVETPQS 89
Query: 367 PTPTTTPTTPAP 378
PT PT P
Sbjct: 90 PTTKQVPTEINP 101
Score = 32.3 bits (73), Expect = 1.1
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTP--TTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPG 569
P T P P S P+ P TTPP S P+ P++ +P
Sbjct: 33 PSSTKVEAPQSTPPSTKVEAPQSKPNATTPP-------STKVEAPQQTPNATTP------ 79
Query: 570 SPDPRCPRPPSPTPEYVCYPGSIDPR 595
+ P SPT + V P I+P+
Sbjct: 80 -SSTKVETPQSPTTKQV--PTEINPK 102
Score = 31.5 bits (71), Expect = 1.8
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
P PP T P P S P+ P+ T P S P P
Sbjct: 41 PQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATT---------PSSTKVETPQSPT 91
Query: 455 TTPRPTTQPP 464
T PT P
Sbjct: 92 TKQVPTEINP 101
Score = 30.8 bits (69), Expect = 3.5
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 12/60 (20%)
Query: 429 SPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
+P+ T AP P S P P P P + P +P TTP
Sbjct: 32 TPSSTKVEAPQSTPPSTKVEAPQSKPNATTP------------PSTKVEAPQQTPNATTP 79
Score = 30.4 bits (68), Expect = 4.6
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
TTP T P P S P+ P+ T P S P + P P +
Sbjct: 31 TTPSSTKVEAPQSTPPSTKVEAPQSKPNATT---------PPSTKVEAPQQTPNATTPSS 81
Query: 340 TPRPTTQPP 348
T T Q P
Sbjct: 82 TKVETPQSP 90
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 36.0 bits (83), Expect = 0.090
Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 15/55 (27%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 410
PD P + T T T T P T P TT PT +
Sbjct: 714 PDTTTSEDP-TTTTTPTTTGPEE------------TT--ETAEPTTTTEEPTEET 753
Score = 32.5 bits (74), Expect = 1.2
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 419 PDPRCPRPP-PSPTPTTT-PAPICYPGSNDPRCPSPPPTTPRPTTQP 463
PD P + TPTTT P P TT PT +
Sbjct: 714 PDTTTSEDPTTTTTPTTTGPEE-------TTETAEPTTTTEEPTEET 753
Score = 32.2 bits (73), Expect = 1.4
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 297 PDPRCPRPP-PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 347
PD P + TPTTT P T P TT PT +
Sbjct: 714 PDTTTSEDPTTTTTPTTTG----------PEETT--ETAEPTTTTEEPTEET 753
Score = 31.8 bits (72), Expect = 2.2
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
P T+ PTT +P P + T T TT P
Sbjct: 712 ERPDTTTSEDPTTTT-------TPTTTGPE-ETTETAEPTTTTEEP 749
Score = 31.4 bits (71), Expect = 2.5
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 306 PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
P TT+ P + T P P TT+ P
Sbjct: 712 ERPDTTTSEDP-----TTTTTPTTTGPEETTETAEPTTTTEEP 749
Score = 31.4 bits (71), Expect = 2.7
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 446 DPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
D P TT PTT P+ PT TT P
Sbjct: 715 DTTTSEDPTTTTTPTTT--------GPEE--TTETAEPTTTTEEP 749
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 35.8 bits (83), Expect = 0.099
Identities = 27/115 (23%), Positives = 29/115 (25%), Gaps = 30/115 (26%)
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
+ P TTPAP P TP T P P P PS
Sbjct: 169 TTDPATTPAP-----------AAPVDTTPTNSQTPAVATAPAPAVDPQQN----AVVAPS 213
Query: 367 PTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
T TPAP P P P PT Q P+
Sbjct: 214 QANVDTAATPAP---------------AAPATPDGAAPLPTDQAGVSTPAADPNA 253
Score = 35.0 bits (81), Expect = 0.17
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
P TT P P +P P +P T PAP P N PS T
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPA 489
P P +PD P P +TPA
Sbjct: 223 PAPAA---PATPDGAAPLPTDQAGVSTPA 248
Score = 35.0 bits (81), Expect = 0.17
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
+ P TTP P P P+ P A V P ++ P P
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATPAPAA 227
Query: 511 PPPPTTPAP 519
P P AP
Sbjct: 228 PATPDGAAP 236
Score = 34.2 bits (79), Expect = 0.25
Identities = 22/99 (22%), Positives = 25/99 (25%), Gaps = 19/99 (19%)
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
+ P TTP AP P TP T P P P
Sbjct: 169 TTDPATTPAPAAP---------------VDTTPTNSQTPAVATAPAPAVDPQQN----AV 209
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP 464
PS T A P +P PT + P
Sbjct: 210 VAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248
Score = 34.2 bits (79), Expect = 0.29
Identities = 26/96 (27%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 285 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT 344
TT P P P P S TP AP + DP+ P T T
Sbjct: 169 TTDPATT--PAPAAPVDTTPTNSQTPAVATAP---APAVDPQQNAVVAPSQANVDTA-AT 222
Query: 345 TQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
P P +PD P P +T P LV
Sbjct: 223 PAPAA---PATPDGAAPLPTDQAGVSTPAADPNALV 255
Score = 31.5 bits (72), Expect = 2.2
Identities = 12/66 (18%), Positives = 14/66 (21%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P +P P +P P P P TP
Sbjct: 172 PATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATP 231
Query: 486 TTPAPL 491
APL
Sbjct: 232 DGAAPL 237
Score = 30.8 bits (70), Expect = 3.1
Identities = 20/95 (21%), Positives = 24/95 (25%), Gaps = 14/95 (14%)
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTT 538
P+ TP AP+ T P P T P P N P
Sbjct: 170 TDPATTPAPAAPV-----------DTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVD 218
Query: 539 PPPPQCYLGSPDPRCPRPLPS---SPSPPVCYPGS 570
P PLP+ S P P +
Sbjct: 219 TAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 36.2 bits (83), Expect = 0.10
Identities = 44/237 (18%), Positives = 59/237 (24%), Gaps = 35/237 (14%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ D + PR T T C+ + P PP
Sbjct: 490 RAAPEQLFKDLMLPSQMLDRKSPR-----THTVNDRGQCFGDPDISTAAMFIIPKPPDSF 544
Query: 340 TPRPTT--QPPPICYPGSPDPRCP-----------RPPPSPTPTT----TPTTPAPLVCY 382
P C P +P P+ P T TP T + ++
Sbjct: 545 ANVAAAALYNSPFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILAL 604
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
+ P T P P + PPP +P P P P P +
Sbjct: 605 RDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPF----------PLPLTVAIPNPSLHQ 654
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSD 499
P P P+ PP P PRP S P + S D
Sbjct: 655 SEVFMGYPFQSPHLGAPSGSPPG---KDRDSPDLPRPTTSLHPKLLSAHHHPGSSPD 708
Score = 35.1 bits (80), Expect = 0.20
Identities = 39/214 (18%), Positives = 55/214 (25%), Gaps = 37/214 (17%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRC--PRPPPSPTPTTTPAPICYPGSNDPRCPS 451
P P + P + SP R P + A + P+ P
Sbjct: 487 KPERAAPEQLFKDLMLPSQMLDRKSPRTHTVNDRGQCFGDPDISTAAMFII----PKPPD 542
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCP-----------RPPPS--------PTPTTPAPLV 492
P C P +P P+ P TP T + ++
Sbjct: 543 SFANVAAAALYNSPFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRIL 602
Query: 493 CYPGSSDPRCPTRPPPPPPPPPTTPA----PPVCYPGSNDPRCPRPTPTTPPPPQCYLGS 548
+ P T P P + PP +P P P P P +
Sbjct: 603 ALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPF------PLPLTVAIPNPSLHQSE 656
Query: 549 PDPRCPRPLPSSPSPPVCYPGSPD--PRCPRPPS 580
P P +P PG P PRP +
Sbjct: 657 VFMGYPFQSPHLGAPSGSPPGKDRDSPDLPRPTT 690
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 35.8 bits (82), Expect = 0.10
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPR 530
+ P PS + PAP P + P PP P P P T AP P S+
Sbjct: 208 AEPAEEEAPAPSEAGSEPAP---DPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDS 264
Query: 531 CPRPTP 536
P TP
Sbjct: 265 GPYVTP 270
Score = 33.1 bits (75), Expect = 0.76
Identities = 9/49 (18%), Positives = 11/49 (22%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 350
P P + P PP P P P P+
Sbjct: 211 AEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259
Score = 32.7 bits (74), Expect = 1.1
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 358 PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
P P +P P+ + PAP P + P PP P P P P+
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAP---DPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259
Score = 32.3 bits (73), Expect = 1.5
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY 441
P + P+ P P R P P + P + P ++ Y
Sbjct: 210 PAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAK-TAAPAAAAPVSSGDSGPY 267
Score = 31.1 bits (70), Expect = 3.1
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTT 372
P + P+ P P R P P + P + P ++
Sbjct: 210 PAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAK-TAAPAAAAPVSS 261
Score = 31.1 bits (70), Expect = 3.3
Identities = 14/58 (24%), Positives = 17/58 (29%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
G + P P+ P P P P P P+P T P AP
Sbjct: 201 GDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258
Score = 30.4 bits (68), Expect = 5.6
Identities = 12/61 (19%), Positives = 17/61 (27%)
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
P +P P P+P P AP + P + P P +
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266
Query: 523 Y 523
Y
Sbjct: 267 Y 267
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 35.9 bits (83), Expect = 0.10
Identities = 15/41 (36%), Positives = 15/41 (36%)
Query: 500 PRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
P PPPPPPP P P P DP T P
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 33.2 bits (76), Expect = 0.61
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 499 DPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P +PPPPPPPP +P P T
Sbjct: 266 LPEPEPQPPPPPPPPEPP-------EPEEEPDEPDQTDPDDGEET 303
Score = 32.9 bits (75), Expect = 0.78
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 324 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 370
P +PPPPPPPP P P +P PD P
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDE------PDQTDPDDGEETDQI 306
Score = 32.9 bits (75), Expect = 0.78
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 433
P +PPPPPPPP P P +P PD P
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDE------PDQTDPDDGEETDQI 306
Score = 32.5 bits (74), Expect = 1.3
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
PPPPPP P P P P + P
Sbjct: 275 PPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 32.5 bits (74), Expect = 1.3
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 427
PPPPPP P P P P + P
Sbjct: 275 PPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 32.1 bits (73), Expect = 1.7
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 365
P PPPPPPP P + P
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 32.1 bits (73), Expect = 1.7
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 428
P PPPPPPP P + P
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 30.5 bits (69), Expect = 4.6
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
R P P PPPPP P P +P P T P L+
Sbjct: 265 RLPEPEPQPPPPPPPPEPP--------EPEEEPDEPDQTDPDDGEETDQIPEELM 311
Score = 30.5 bits (69), Expect = 5.3
Identities = 15/61 (24%), Positives = 17/61 (27%), Gaps = 14/61 (22%)
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
PR T P P +P+ P PPP P P P P
Sbjct: 261 PRATRLPEP-------EPQPPPPPPPPEPPEPEE-------EPDEPDQTDPDDGEETDQI 306
Query: 517 P 517
P
Sbjct: 307 P 307
Score = 29.8 bits (67), Expect = 7.4
Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 373
PR P P P PP P P P P +P P P
Sbjct: 261 PRATRLPEPEPQPPPPPPPPEPPEP--EEEPDEPDQTDPDDGEETDQIP 307
Score = 29.8 bits (67), Expect = 7.4
Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
PR P P P PP P P P P +P P P
Sbjct: 261 PRATRLPEPEPQPPPPPPPPEPPEP--EEEPDEPDQTDPDDGEETDQIP 307
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 35.6 bits (81), Expect = 0.10
Identities = 42/121 (34%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPG-SPDPRCPRPPPSPTPTTTPTTPAPLVC-YP 383
+ P+ P P P P P +P CP P P+ P T PT P P VC P
Sbjct: 74 QRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAP 133
Query: 384 GSNDPRCP--TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICY 441
P CP TR PP PP TP+P PI P P P + PT AP
Sbjct: 134 ARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPP--PDYPAASCPTIETAPAAS 191
Query: 442 P 442
P
Sbjct: 192 P 192
Score = 31.4 bits (70), Expect = 2.1
Identities = 40/125 (32%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 462 QPPPVCYPGSPDPRCPRPP---PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
Q P P +P P C P P+ P PAP V P + P CP P PPP PA
Sbjct: 74 QRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPA-PACPPATAPTCPPPAVCPA 132
Query: 519 PPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRP 578
P P CP T PP P P P + PP YP + P
Sbjct: 133 -----PARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETA 187
Query: 579 PSPTP 583
P+ +P
Sbjct: 188 PAASP 192
Score = 30.6 bits (68), Expect = 4.0
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
RP+ Q P P P P +P PAP + P CP P PPP
Sbjct: 75 RPSGQSPLAPSPACAAPAPACPACAPA---APAPAVTCPAPAPACPPATAPTCPPPAVCP 131
Query: 343 PTTQPPPICYPGSPD--PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
+P P C P + P P P P P P P + P CPT P
Sbjct: 132 APARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAAS 191
Query: 401 P 401
P
Sbjct: 192 P 192
Score = 29.8 bits (66), Expect = 5.4
Identities = 40/118 (33%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P +P P C P P+ P P PAP V P P CP P PPP +P P
Sbjct: 81 PLAPSPACAAPAPA-CPACAPAAPAPAVTCPAPA-PACPPATAPTCPPPAVCPAPARPAP 138
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP-PTTPRPTTQPPPVCYP 469
C P + PP P PT PAP P + P P P PT + P P
Sbjct: 139 ACPPSTRQC----PPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASP 192
>gnl|CDD|222915 PHA02670, PHA02670, ORF112 putative chemokine-binding protein;
Provisional.
Length = 287
Score = 35.3 bits (81), Expect = 0.11
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 303 RPPPSPTPTTTPAPICYPG----SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
+ P PTP P P PG P PP T+ P P+ + D
Sbjct: 169 KFPEEPTPKPEPTPSTTPGPTLLETTLDLTDEPTTTPPVDTSVDRKRNPDPVDFSLLVDT 228
Query: 359 RC 360
RC
Sbjct: 229 RC 230
Score = 31.5 bits (71), Expect = 1.6
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 425 RPPPSPTPTTTPAPICYPG-----SNDPRCPSPPPTTPRPTT-----QPPPVCYPGSPDP 474
+ P PTP P P PG + P T P T+ P PV + D
Sbjct: 169 KFPEEPTPKPEPTPSTTPGPTLLETTLDLTDEPTTTPPVDTSVDRKRNPDPVDFSLLVDT 228
Query: 475 RC 476
RC
Sbjct: 229 RC 230
Score = 31.1 bits (70), Expect = 2.7
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 362 RPPPSPTPTTTP---TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 418
+ P PTP P TTP P + P PP T+ P P+ +
Sbjct: 169 KFPEEPTPKPEPTPSTTPGPTLL---ETTLDLTDEPTTTPPVDTSVDRKRNPDPVDFSLL 225
Query: 419 PDPRC 423
D RC
Sbjct: 226 VDTRC 230
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 35.6 bits (82), Expect = 0.14
Identities = 19/100 (19%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
Query: 391 PTRPPPPPPPPTTPRPTTQ--PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
P R P P T R P +C P P P +P ++ P +
Sbjct: 308 PPRIVVPWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDA 367
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
T PT+ P P + P
Sbjct: 368 SLPDVRTGTAPTSLANVS--HADPAVAQPTQAATLAGAAP 405
Score = 34.5 bits (79), Expect = 0.32
Identities = 13/77 (16%), Positives = 18/77 (23%), Gaps = 5/77 (6%)
Query: 443 GSNDPRCPSPPPTTPRPTTQP---PPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSD 499
++ P P P PV D P PT+ A +
Sbjct: 333 CTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVS--HADPA 390
Query: 500 PRCPTRPPPPPPPPPTT 516
PT+ P
Sbjct: 391 VAQPTQAATLAGAAPKG 407
Score = 31.8 bits (72), Expect = 1.9
Identities = 15/67 (22%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 310 PTTTPAPICYPGSNDPRCPTRPPPP-----PPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
P T P GS+DP P P P T PT+ P P
Sbjct: 340 PDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVS--HADPAVAQPTQA 397
Query: 365 PSPTPTT 371
+
Sbjct: 398 ATLAGAA 404
Score = 30.2 bits (68), Expect = 5.4
Identities = 20/109 (18%), Positives = 26/109 (23%), Gaps = 14/109 (12%)
Query: 328 PTRPPPPPPPPTTPRPTTQ--PPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS 385
P R P P T R P +C P P P +P ++ P P
Sbjct: 308 PPRIVVPWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAA----- 362
Query: 386 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT 434
P T PT+ P P +
Sbjct: 363 -----TPVDASLPDVRTGTAPTSLANVS--HADPAVAQPTQAATLAGAA 404
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 35.4 bits (82), Expect = 0.14
Identities = 18/77 (23%), Positives = 18/77 (23%), Gaps = 12/77 (15%)
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRP 394
PP P P P P P TP A P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAK------------PPEP 171
Query: 395 PPPPPPPTTPRPTTQPP 411
P PP TP P
Sbjct: 172 APAAKPPPTPVARADPR 188
Score = 33.5 bits (77), Expect = 0.53
Identities = 14/65 (21%), Positives = 15/65 (23%), Gaps = 7/65 (10%)
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
PP P P P P P TP + P P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPA-------AAKPPEPAPAAK 176
Query: 458 RPTTQ 462
P T
Sbjct: 177 PPPTP 181
Score = 32.7 bits (75), Expect = 0.77
Identities = 16/88 (18%), Positives = 18/88 (20%), Gaps = 16/88 (18%)
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P P P P P P PT P P
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK----------------PTPPAAAKP 168
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTP 539
P P A P P + P +
Sbjct: 169 PEPAPAAKPPPTPVARADPRETRVPMSR 196
Score = 32.7 bits (75), Expect = 0.79
Identities = 14/58 (24%), Positives = 18/58 (31%)
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYP 568
PP A P P+ TP PP +P P P+ + P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
Score = 32.7 bits (75), Expect = 0.86
Identities = 18/74 (24%), Positives = 19/74 (25%), Gaps = 10/74 (13%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
P P P P P PP +PT PP P P
Sbjct: 124 PPAAAPAAAAAAKA-----EKTTPEKPKAAAPTPEPPAASKPT--PPA---AAKPPEPAP 173
Query: 425 RPPPSPTPTTTPAP 438
P PTP P
Sbjct: 174 AAKPPPTPVARADP 187
Score = 32.3 bits (74), Expect = 1.3
Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 306 PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 365
P A P P P P PP +PT PP P P P
Sbjct: 124 PPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPT--PPA---AAKPPEPAPAAKP 177
Query: 366 SPTPTTT 372
PTP
Sbjct: 178 PPTPVAR 184
Score = 32.0 bits (73), Expect = 1.3
Identities = 17/78 (21%), Positives = 19/78 (24%), Gaps = 16/78 (20%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP----PPPPPTTPRPTTQPPPICYPGSPD 357
P A P PT PP P PP P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAP---------- 173
Query: 358 PRCPRPPPSPTPTTTPTT 375
+PPP+P P
Sbjct: 174 --AAKPPPTPVARADPRE 189
Score = 32.0 bits (73), Expect = 1.5
Identities = 15/65 (23%), Positives = 15/65 (23%), Gaps = 8/65 (12%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
P P P P P TP P P P PP TP
Sbjct: 132 AAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPA--------AAKPPEPAPAAKPPPTPVA 183
Query: 344 TTQPP 348
P
Sbjct: 184 RADPR 188
Score = 31.6 bits (72), Expect = 2.3
Identities = 12/60 (20%), Positives = 15/60 (25%)
Query: 428 PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT 487
P A + + + PT P P P P P PTP
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183
Score = 30.4 bits (69), Expect = 4.4
Identities = 16/62 (25%), Positives = 18/62 (29%)
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPP 514
T P P + P P + PT P P P P P PPP
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179
Query: 515 TT 516
T
Sbjct: 180 TP 181
Score = 30.0 bits (68), Expect = 6.7
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP-TPTTTPTTPAPLVCYPGSN 386
P P + T + P P P +P P P A P +
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184
Query: 387 DPRCPTRPP 395
TR P
Sbjct: 185 ADPRETRVP 193
Score = 29.7 bits (67), Expect = 7.0
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 833 PTTPAPPQCYPGSPDPRCPRPPPSPT-TPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
+ P P P P P P PP +PP +P A P
Sbjct: 132 AAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADP 187
Score = 29.7 bits (67), Expect = 7.0
Identities = 12/67 (17%), Positives = 14/67 (20%), Gaps = 10/67 (14%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P + P P PP P + P P P
Sbjct: 124 PPAAAPAAAAAAKA------EKTTPEKPKAAAPTPEPPAASKP----TPPAAAKPPEPAP 173
Query: 537 TTPPPPQ 543
PPP
Sbjct: 174 AAKPPPT 180
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 35.0 bits (80), Expect = 0.15
Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 21/189 (11%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
P TT + T+ P + +P P P+ P+ T T L T
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQG--TT 225
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P P T P P+ + P S P+ P S +TT + R +PP
Sbjct: 226 TSSNPEPQTEPPPSQRGP------SGSPQHPPSTTSQDQSTTGD----GQEHTQRRKTPP 275
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
T+ R + P + RP P PT TT S P PP
Sbjct: 276 ATSNRRSPHSTATPPPTTKRQETGRPTPRPTATT---------QSGSSPPHSSPPGVQAN 326
Query: 514 PTTPAPPVC 522
PTT C
Sbjct: 327 PTTQNLVDC 335
Score = 35.0 bits (80), Expect = 0.16
Identities = 41/194 (21%), Positives = 59/194 (30%), Gaps = 15/194 (7%)
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS--PPP 454
P TT + T+ P + +P P P+ P+ T S +P
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS 227
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPP 514
+ P P T+PPP S P+ P S +T R T P P
Sbjct: 228 SNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGD----GQEHTQRRKTPPATSNRRSP 283
Query: 515 TTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPR 574
+ A P + P P PT P + P++ + C P
Sbjct: 284 HSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDP--- 340
Query: 575 CPRPPSPTPEYVCY 588
P P +CY
Sbjct: 341 ------PKPNSICY 348
Score = 33.9 bits (77), Expect = 0.40
Identities = 48/198 (24%), Positives = 65/198 (32%), Gaps = 29/198 (14%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP--TRPPPPP 335
+TT + T+ P + +P P P+ P+ T S +P T P
Sbjct: 171 AVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNP 230
Query: 336 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPP 395
P T P P+ + P S P+ P S +TT + R + P
Sbjct: 231 EPQTEPPPSQRGP------SGSPQHPPSTTSQDQSTTGDG--------QEHTQR--RKTP 274
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P +P T PPP R P+P PT T P + SPP
Sbjct: 275 PATSNRRSPHSTATPPP------TTKRQETGRPTPRPTATTQSGSSPPHS-----SPPGV 323
Query: 456 TPRPTTQPPPVCYPGSPD 473
PTTQ C P
Sbjct: 324 QANPTTQNLVDCKELDPP 341
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 34.9 bits (80), Expect = 0.16
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
S P PR P P PT P P +S P PP P PP A P
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRS----PDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRP 59
Query: 529 PRCPRP-TPTTPPPPQCYLGSPDPRCPRPLP 558
CP T ++ PP+ LG D P P
Sbjct: 60 RGCPAGVTFSSSAPPRPPLGLDDAPAATPPP 90
Score = 34.9 bits (80), Expect = 0.19
Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
R +R P PP P+ PRPT PR P P TP + P P G+ P
Sbjct: 3 RARSRSPSPPRRPSPPRPTP------------PRSPDASPEETPPSPPGP----GAEPPP 46
Query: 449 CPSPPPTTP--RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
+ P P RP P V + S PR P TP PL
Sbjct: 47 GRAAGPAAPRRRPRGCPAGVTFSSSAPPRPPLGLDDAPAATPPPL 91
Score = 33.3 bits (76), Expect = 0.51
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS 385
R +R P PP P+ PRPT P P P P P P P AP G
Sbjct: 3 RARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGC 62
Query: 386 NDPRCPTRPPPPPPP-PTTPRPTTQPPPICYPG 417
+ PP PP P PPP+ +
Sbjct: 63 PAGVTFSSSAPPRPPLGLDDAPAATPPPLDWTE 95
Score = 32.9 bits (75), Expect = 0.64
Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP-RPTPTTPPPPQCYLGSPDP-RCPRPLP- 558
P PP P P P PP S + P P P PPP G P R PR P
Sbjct: 5 RSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPA 64
Query: 559 ----SSPSPPVCYPGSPDPRCPRPPS 580
SS +PP G D PP
Sbjct: 65 GVTFSSSAPPRPPLGLDDAPAATPPP 90
Score = 29.9 bits (67), Expect = 6.1
Identities = 26/92 (28%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
S P PR P P PT +P P P P P P P P R
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAA-----PRRR 58
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPP 507
P T ++ AP G D T PP
Sbjct: 59 PRGCPAGVTFSSSAPPRPPLGLDDAPAATPPP 90
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 35.3 bits (81), Expect = 0.16
Identities = 38/189 (20%), Positives = 51/189 (26%), Gaps = 13/189 (6%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P P P P TP + P S R P P +T ND
Sbjct: 78 PLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSADCNDSEQS 137
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP-LVCYPGSSDPRCPTRPPPP 509
S P T+ P + R P + L P + PT P
Sbjct: 138 STPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAPQA 197
Query: 510 PPPPPTTPAPPVCYPGSN--------DPRC----PRPTPTTPPPPQCYLGSPDPRCPRPL 557
P P GS+ + R P+ + P P+ + + L
Sbjct: 198 KPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDELGKSL 257
Query: 558 PSSPSPPVC 566
PS SP
Sbjct: 258 PSLMSPRKK 266
Score = 33.0 bits (75), Expect = 0.69
Identities = 26/129 (20%), Positives = 33/129 (25%), Gaps = 7/129 (5%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P P P TP + P S R P P +T T+ C ND
Sbjct: 78 PLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSADC----ND 133
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPG---SPDPRCPRPPPSPTPTTTPAPICYPGS 444
+ P +T P G S R +P P +
Sbjct: 134 SEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTA 193
Query: 445 NDPRCPSPP 453
P P
Sbjct: 194 APQAKPELP 202
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 35.0 bits (80), Expect = 0.18
Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 3/98 (3%)
Query: 464 PPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC- 522
+ + T T PA P P P P P C
Sbjct: 354 TAPSRVLAAAAKVAVIAAPQTHTGPADR--QRPQRPDGIPYSVPARSPMTAYPPVPQFCG 411
Query: 523 YPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSS 560
PG P P+ T+ P P P P +P S
Sbjct: 412 DPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPIS 449
Score = 34.2 bits (78), Expect = 0.34
Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 10/75 (13%)
Query: 830 TPSPTTPAPPQCYP-GSPDPRCPRPPPSPTTPAPPQ---------CYPGSPDPRCPRPPL 879
A PQ + + R RP P + + G P P P
Sbjct: 363 AAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQ 422
Query: 880 SPTTPAPPQCYPGSP 894
SP T P+ P
Sbjct: 423 SPGTSYGPEPVGPVP 437
Score = 34.2 bits (78), Expect = 0.39
Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P T P + P G P R P + P P + P +
Sbjct: 366 VAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPG 425
Query: 391 PTRPPPP--PPPPTTPRPTTQP 410
+ P P P PP P P
Sbjct: 426 TSYGPEPVGPVPPQPTNPYVMP 447
Score = 33.4 bits (76), Expect = 0.68
Identities = 19/74 (25%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
+ P T P + P G P T P P C G P P P
Sbjct: 369 IAAPQTHTGPADRQRPQRPDG--IPYSVPARSPMTAYPPVPQFC--GDPGLVSPYNPQSP 424
Query: 510 P---PPPPTTPAPP 520
P P P PP
Sbjct: 425 GTSYGPEPVGPVPP 438
Score = 33.0 bits (75), Expect = 0.73
Identities = 20/91 (21%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPA-PICYPGSNDPRCPTRPPPP---PPPPTTPRPTTQPPP 349
P+ P P P P S R P PP P
Sbjct: 364 AKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQS 423
Query: 350 ICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
P+P P PP P P + A +V
Sbjct: 424 PGTSYGPEPVGPVPPQPTNPYVMPISMANMV 454
Score = 32.3 bits (73), Expect = 1.3
Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P T P + P G P R P + P PG P P P
Sbjct: 366 VAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFC-GDPGLVSPYNPQSP 424
Query: 454 PTTPRPTTQPPPVCYPGSPDPR 475
T+ P +P P +P
Sbjct: 425 GTSYGP--EPVGPVPPQPTNPY 444
Score = 32.3 bits (73), Expect = 1.4
Identities = 18/87 (20%), Positives = 20/87 (22%), Gaps = 6/87 (6%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP---PPPPTTPRPTTQ 409
P+ P P P P S R P PP
Sbjct: 364 AKVAVIAAPQTHTGPADRQRPQRPD---GIPYSVPARSPMTAYPPVPQFCGDPGLVSPYN 420
Query: 410 PPPICYPGSPDPRCPRPPPSPTPTTTP 436
P P+P P PP P P
Sbjct: 421 PQSPGTSYGPEPVGPVPPQPTNPYVMP 447
Score = 31.9 bits (72), Expect = 2.1
Identities = 23/96 (23%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 369 PTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI-CYPGSPDPRCPRPP 427
A + G D + P RP P P T PP+ + G P P P
Sbjct: 362 AAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNP 421
Query: 428 PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
SP + P P+ PP P P
Sbjct: 422 QSPGTSYGPEPV----------GPVPPQPTNPYVMP 447
Score = 31.1 bits (70), Expect = 2.9
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 8/96 (8%)
Query: 619 PRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPP-TSQPFIPV 677
+ + P P P S R + PP P
Sbjct: 362 AAAKVAVIAAPQ-------THTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPG 414
Query: 678 GLTPFVCTCNVTTPRPIPPPLCYPGSTDPRCPREEI 713
++P+ T+ P P P T+P +
Sbjct: 415 LVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISM 450
Score = 31.1 bits (70), Expect = 2.9
Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 427 PPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
+P T PA P D S P +P T PP + G P P P SP +
Sbjct: 369 IAAPQTHTGPADRQRPQRPDGIPYSVPARSP-MTAYPPVPQFCGDPGLVSPYNPQSPGTS 427
Query: 487 TPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
V PP P P P
Sbjct: 428 YGPEPV-----------GPVPPQPTNPYVMP 447
Score = 31.1 bits (70), Expect = 3.4
Identities = 24/84 (28%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 510 PPPPPTTPAPPVCYPGSND---PRCPRPTPTTPPPPQCYLGSP--DPRCPRPLPSSPSPP 564
A P + G D P+ P P + P P C P SP P
Sbjct: 362 AAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNP 421
Query: 565 VCYPGS--PDPRCPRPPSPTPEYV 586
S P+P P PP PT YV
Sbjct: 422 QSPGTSYGPEPVGPVPPQPTNPYV 445
Score = 30.7 bits (69), Expect = 4.2
Identities = 23/108 (21%), Positives = 26/108 (24%), Gaps = 21/108 (19%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
+P T PA P P P P T P Q + G P P P
Sbjct: 369 IAAPQTHTGPADRQRPQR--PDGIPYSVPARSPMTAYPPVPQ-----FCGDPGLVSPYNP 421
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
SP + P PP P P P
Sbjct: 422 QSPGTSYGP--------------EPVGPVPPQPTNPYVMPISMANMVY 455
Score = 30.4 bits (68), Expect = 5.5
Identities = 23/121 (19%), Positives = 34/121 (28%), Gaps = 13/121 (10%)
Query: 524 PGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
+ PQ + G D + P+ P P P P
Sbjct: 354 TAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSV------PARSPMTAYPPVP 407
Query: 584 EYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPR 643
++ PG + P P+ P T+ G PQP P P+ P P+
Sbjct: 408 QFCGDPGLVSPYNPQSPGTSY-------GPEPVGPVPPQPTNPYVMPISMANMVYPGHPQ 460
Query: 644 P 644
Sbjct: 461 E 461
>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase.
Length = 667
Score = 35.0 bits (80), Expect = 0.19
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
PPPPP PP + PT++P + PR S + T T P P ++
Sbjct: 2 PPPPPQPPPSLFPTSKPTTMS------PRLSLSIKSQSATATDKQPLP---NSNPDNT 50
Score = 32.6 bits (74), Expect = 1.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA-PICYPGSNDP 447
PPPPP PP + PT++P + PR S + T T P+ ++
Sbjct: 2 PPPPPQPPPSLFPTSKPTTMS------PRLSLSIKSQSATATDKQPLPNSNPDNT 50
Score = 31.9 bits (72), Expect = 1.9
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 358 PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P P+PPPS PT+ PTT +P ++ P
Sbjct: 3 PPPPQPPPSLFPTSKPTTMSP------RLSLSIKSQSATATDKQPLPNSNPDNTT 51
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 34.5 bits (79), Expect = 0.21
Identities = 22/70 (31%), Positives = 25/70 (35%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P PPP PA P P P P+P PP P P P++P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102
Query: 563 PPVCYPGSPD 572
PP PG D
Sbjct: 103 PPAPEPGRID 112
Score = 34.1 bits (78), Expect = 0.31
Identities = 25/71 (35%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P PPPPPP+T P P P P P P P P P P
Sbjct: 41 PAPPPPPPSTAAAAPAPAA---PPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVD 97
Query: 391 PTRPPPPPPPP 401
P PPPP P P
Sbjct: 98 PNAPPPPAPEP 108
Score = 33.3 bits (76), Expect = 0.54
Identities = 27/79 (34%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P+PPP P P P P P P P P AP P PPP
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAP-------PPPPADPNAPPP 93
Query: 510 PPPPPTTPAPPVCYPGSND 528
PP P P PP PG D
Sbjct: 94 PPVDPNAPPPPAPEPGRID 112
Score = 31.0 bits (70), Expect = 2.5
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
PS AP P P P P P P P P + P PP+ P P PP
Sbjct: 48 PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPE 107
Query: 891 PGSPD 895
PG D
Sbjct: 108 PGRID 112
Score = 31.0 bits (70), Expect = 2.6
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 835 TPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSP 894
P PP +P P P PPP P P PQ P P+ P PP P P PP P +P
Sbjct: 44 PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ--PDDPNAAPPPPPADPNAPPPPPVDPNAP 101
Query: 895 DP 896
P
Sbjct: 102 PP 103
Score = 31.0 bits (70), Expect = 2.7
Identities = 21/66 (31%), Positives = 24/66 (36%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
PPPPPP P PP P + P P+ P PA P +PP
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102
Query: 454 PTTPRP 459
P P P
Sbjct: 103 PPAPEP 108
Score = 30.6 bits (69), Expect = 3.3
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 473 DPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP 532
DP P PPPS PAP P PP PP P P DP P
Sbjct: 40 DPAPPPPPPSTAAAAPAP--------AAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAP 91
Query: 533 RPTPTTPPPPQ 543
P P P P
Sbjct: 92 PPPPVDPNAPP 102
Score = 30.6 bits (69), Expect = 4.0
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P PPP P T P P P P P P P P P D
Sbjct: 41 PAPPPPPPSTAAAAPAPAA---PPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVD 97
Query: 421 PRCPRPPPSP 430
P P PP
Sbjct: 98 PNAPPPPAPE 107
Score = 30.2 bits (68), Expect = 5.2
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
PPPPPP T P P P PP+P P P P P + P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPP------PAAPPAPQPDDPNAAPPPPPADPNAPPPPPV 96
Query: 392 TRPPPPPPPPTTPR 405
PPPP P R
Sbjct: 97 DPNAPPPPAPEPGR 110
Score = 30.2 bits (68), Expect = 5.2
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP----PPPPPTTPRPTTQPPPICYPGSPD 357
P PPP T PAP P P P P P PPP P PPP P +P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102
Query: 358 PRCPRP 363
P P P
Sbjct: 103 PPAPEP 108
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 34.9 bits (80), Expect = 0.21
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPR 458
P T P P + P P + P P+ PAP N + P R
Sbjct: 196 PATAPAPASAQPAAQSPAATQPEPAA-APAAAKAQAPAPQQAGTQNPAKVDHAAPAVRR 253
Score = 33.3 bits (76), Expect = 0.59
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
S P T P P + P P + P P + PAP
Sbjct: 194 STPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAP 233
Score = 30.2 bits (68), Expect = 5.5
Identities = 12/56 (21%), Positives = 14/56 (25%), Gaps = 1/56 (1%)
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPPP-PPPTTPAPPVCYPGSNDPRCPRPTP 536
S T PAP P + P P P P N + P
Sbjct: 194 STPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAP 249
Score = 30.2 bits (68), Expect = 6.4
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPP 332
T P P + P P + P P + PAP N + P
Sbjct: 198 TAPAPASAQPAAQSPAATQPEPAAAP-AAAKAQAPAPQQAGTQNPAKVDHAAP 249
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 34.8 bits (80), Expect = 0.21
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 619 PRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIP-V 677
P + P+ + P P P TP +P P+ +VPPPT F P
Sbjct: 123 LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFP----PQGSVAVPPPT--AFYPGN 176
Query: 678 GLTPFVCTCNVTTPRPIPPP 697
G+TP T + +P P
Sbjct: 177 GVTP----PPQVTYQSVPVP 192
Score = 34.0 bits (78), Expect = 0.32
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
G+N P T P P P + P P +P P P S P+ P PT YP
Sbjct: 123 LGAN-PVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAF-------YP 174
Query: 443 GSNDPRCPSPPPTTPRPTTQP 463
G+ PP T + P
Sbjct: 175 GNGVTP---PPQVTYQSVPVP 192
Score = 34.0 bits (78), Expect = 0.40
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 336 PPPTTPRPTTQPPPICYPGSPDP-RCPRPPPSPT---PTTTPTTPAPLVCYPGSNDPRCP 391
T +P P P P P+P +P P + P P YPG+ P
Sbjct: 123 LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPP 182
Query: 392 TRPPPPPPPPTTPRPTT 408
P P + T
Sbjct: 183 QVTYQSVPVPNRIQRKT 199
Score = 32.9 bits (75), Expect = 0.77
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 417 GSPDPRCPRPPPSP--TPTTTPAPICYPGSNDPRCPSPPPTTP-RPTTQPPPVCYPGSPD 473
G P P+ P PP P P P+ +P P P P T PP V Y P
Sbjct: 132 GEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQVTYQSVPV 191
Query: 474 P 474
P
Sbjct: 192 P 192
Score = 32.1 bits (73), Expect = 1.4
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 846 PDPRCPRPPPSPTTPAPPQCYPGSPDPRCP---RPPLSPTTPAPPQC-YPG 892
+P P P PA P G P P PP PP YPG
Sbjct: 125 ANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPG 175
Score = 31.3 bits (71), Expect = 2.4
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 295 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPP----------PPPPTTPRPT 344
G P P+ P PP P P P P S P+ PPP PPP T +
Sbjct: 132 GEPVPQMPASPPGPE--GEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQVTYQSV 189
Query: 345 TQPPPI 350
P I
Sbjct: 190 PVPNRI 195
Score = 30.9 bits (70), Expect = 3.3
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
G+N P + P P + P P P P PP + P P YPG+
Sbjct: 123 LGAN-PVTATGEPVPQMPASPPGPEGEP-QPGNTPVSFPPQGSVAVPPPTAFYPGNGVTP 180
Query: 502 CPTRPPPPPPPP 513
P P P
Sbjct: 181 PPQVTYQSVPVP 192
Score = 30.6 bits (69), Expect = 4.9
Identities = 20/80 (25%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRC 531
+P P P P P T PP P P YPG+
Sbjct: 125 ANPVTATGEPVPQMPASPPG---PEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNG---- 177
Query: 532 PRPTPTTPPPPQCYLGSPDP 551
TPPP Y P P
Sbjct: 178 -----VTPPPQVTYQSVPVP 192
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 34.2 bits (79), Expect = 0.23
Identities = 16/73 (21%), Positives = 18/73 (24%)
Query: 337 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPP 396
P PR T Q P +P P P T P P P P
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAV 170
Query: 397 PPPPPTTPRPTTQ 409
P + Q
Sbjct: 171 EAPKVEAEKEKEQ 183
Score = 32.7 bits (75), Expect = 0.72
Identities = 11/51 (21%), Positives = 13/51 (25%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
+ PP P+P T P P P P P T
Sbjct: 124 QAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPK 174
Score = 32.3 bits (74), Expect = 1.00
Identities = 16/70 (22%), Positives = 17/70 (24%), Gaps = 4/70 (5%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P PR T Q P +P P P P P R P
Sbjct: 109 EQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTA----PVQPQTPAPVRTQPAA 164
Query: 511 PPPPTTPAPP 520
P AP
Sbjct: 165 PVTQAVEAPK 174
Score = 31.9 bits (73), Expect = 1.1
Identities = 17/69 (24%), Positives = 19/69 (27%), Gaps = 9/69 (13%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
PR T Q P +P P P T AP+ P P P P
Sbjct: 114 VPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPV---------QPQTPAPVRTQPAA 164
Query: 341 PRPTTQPPP 349
P P
Sbjct: 165 PVTQAVEAP 173
Score = 31.2 bits (71), Expect = 1.9
Identities = 11/48 (22%), Positives = 13/48 (27%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
+ PP P+P T P P P P P T
Sbjct: 124 QAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVE 171
Score = 30.4 bits (69), Expect = 4.1
Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
P PR T Q P +P P P T AP+ P + P P +
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPV-QPQTPAPVRTQPAAPVTQA 169
Query: 460 TTQPPP 465
P
Sbjct: 170 VEAPKV 175
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 34.2 bits (78), Expect = 0.32
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 289 PPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP----PPPPPTTPRPT 344
P GS D C P P PA + P + P T P P T+P T
Sbjct: 174 APPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPST 233
Query: 345 TQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
T P P S P+ +P TP P P
Sbjct: 234 TIPAP-----STTIAAPQAGTTPEAEGTPAPPTP 262
Score = 33.0 bits (75), Expect = 0.79
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 375 TPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT 434
T A GS D C P P + PR P + P +P P PR SP T
Sbjct: 171 TLAAPPLGEGSADGSCD-----PALPLSAPR--LGPADVFVPATPRPT-PRTTASPETTP 222
Query: 435 TPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
TP+ P S PS P+ T P P P P PP+ P
Sbjct: 223 TPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAP 276
Score = 29.5 bits (66), Expect = 9.2
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 483 PTPTTPAPLVCYPGSSDPRCPTRPPPPPPP-------PPTTPAPPVCYPGSNDPRCPRPT 535
P T A GS+D C P P P TP P S + T
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPST 226
Query: 536 PTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
T+PP S P+ + + P +P P + TP
Sbjct: 227 TTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATP 274
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 32.9 bits (75), Expect = 0.32
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P+PP PT Q P P P P PP+P PAP PP
Sbjct: 85 PAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAP-----------AAAPPPSD 133
Query: 510 PPPPPTTP 517
PP PP P
Sbjct: 134 PPQPPRAP 141
Score = 31.0 bits (70), Expect = 1.5
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
PP PP PT Q P P P P PP+P P S+ P+ P P
Sbjct: 84 PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
Score = 30.6 bits (69), Expect = 1.7
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P PP PP P PT Q P P P P PP+P A P +D
Sbjct: 81 PLTPPAPPEP--VTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAA-----PPPSD 133
Query: 388 PRCPTRPP 395
P P R P
Sbjct: 134 PPQPPRAP 141
Score = 30.6 bits (69), Expect = 1.9
Identities = 17/58 (29%), Positives = 18/58 (31%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
PP P P T P + PT P PP P P P PR P
Sbjct: 84 PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
Score = 30.6 bits (69), Expect = 2.0
Identities = 16/61 (26%), Positives = 18/61 (29%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P +P P TP + PT P PP P P P PR
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140
Query: 424 P 424
P
Sbjct: 141 P 141
Score = 29.8 bits (67), Expect = 3.2
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
P TP +P SP P P PPP+ TP P P P PPP
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPA---------PAAAVPAPAAAPPP 131
Query: 514 PTTPAPP 520
P PP
Sbjct: 132 SDPPQPP 138
Score = 28.6 bits (64), Expect = 8.0
Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 275 KGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPP 334
K L TP +P SP P P PPP+ TP PA P P
Sbjct: 77 KILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPA------------PAAAVPA 124
Query: 335 PPPPTTPRPTTQPP 348
P P QPP
Sbjct: 125 PAAAPPPSDPPQPP 138
>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family.
Length = 424
Score = 34.0 bits (78), Expect = 0.33
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
R + Q PG P R P ++ SD P +P PPP P
Sbjct: 140 RSSAQHLFYIIPGGPSWR---TSIKPFSSSHYGSHNSSAYSDHLRPLQPYSGELPPPLGP 196
Query: 518 A 518
Sbjct: 197 N 197
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 33.3 bits (76), Expect = 0.46
Identities = 22/96 (22%), Positives = 24/96 (25%), Gaps = 8/96 (8%)
Query: 285 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT 344
T D P + P S PP R
Sbjct: 85 TAPSDAGSQASPDDDAQPAAEAEAADQSAPPE---ASSTSA--TDEAATDPPATAAARDG 139
Query: 345 TQPPPICYPGSPDPRCP---RPPPSPTPTTTPTTPA 377
P P P +PD R RPP S P T T A
Sbjct: 140 PTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDA 175
Score = 30.6 bits (69), Expect = 2.7
Identities = 17/104 (16%), Positives = 19/104 (18%), Gaps = 9/104 (8%)
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
T D P + P S PP
Sbjct: 85 TAPSDAGSQASPDDDAQPAAEAEAADQSAPPEA-------SSTSA--TDEAATDPPATAA 135
Query: 404 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
R P P P +PD R P P P
Sbjct: 136 ARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179
Score = 29.8 bits (67), Expect = 4.7
Identities = 21/104 (20%), Positives = 24/104 (23%), Gaps = 3/104 (2%)
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP-TTQPPPICYPGSPDPRCPRPPP 365
T +D P P +T P R P
Sbjct: 81 GAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGP 140
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQ 409
+P PT P TP P PP P P T Q
Sbjct: 141 TPDPTAQPATPDERR--SPRQRPPVSGEPPTPSTPDAHVAGTLQ 182
>gnl|CDD|223815 COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding
protein) [Cell envelope biogenesis, outer membrane].
Length = 661
Score = 33.9 bits (78), Expect = 0.47
Identities = 14/64 (21%), Positives = 14/64 (21%), Gaps = 2/64 (3%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP--PPPTTPRPTTQPPPICYPGS 418
P P P T P R PPP P T P P S
Sbjct: 598 PGGLRVPFPFTDPDPEGAGTLRAAGGTARPVYVSAPPPDGAPGVPGGKTGTPDNRLPPAS 657
Query: 419 PDPR 422
Sbjct: 658 RANP 661
Score = 30.0 bits (68), Expect = 6.1
Identities = 13/60 (21%), Positives = 13/60 (21%), Gaps = 2/60 (3%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPP--PPPTTPRPTTQPPPICYPGSPDPR 359
P P P A R PPP P T P P S
Sbjct: 602 RVPFPFTDPDPEGAGTLRAAGGTARPVYVSAPPPDGAPGVPGGKTGTPDNRLPPASRANP 661
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 33.7 bits (77), Expect = 0.48
Identities = 29/149 (19%), Positives = 41/149 (27%), Gaps = 7/149 (4%)
Query: 368 TPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRP-TTQPPPICYPGSPDPRCPRP 426
T + TP L+ P P P++ T+P S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSS 254
Query: 427 PPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
P P T P S + P + + P + + SP+P
Sbjct: 255 APKPRETLDP------KSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPK 308
Query: 487 TPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
+P PR P P P P PP
Sbjct: 309 AESPKPLASPGKSPRDPLSPRPKPQSPPV 337
Score = 31.7 bits (72), Expect = 2.0
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 3/136 (2%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
T PP P P S T ++ P P
Sbjct: 203 PVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETL 262
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPP--SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP 397
P+ + PPI + P P S + +P+ L P + P+ P
Sbjct: 263 DPKSPEKAPPIDTTEEE-LKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKS 321
Query: 398 PPPPTTPRPTTQPPPI 413
P P +PRP Q PP+
Sbjct: 322 PRDPLSPRPKPQSPPV 337
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 33.5 bits (76), Expect = 0.56
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSS-DPRCPTRPPPPPPPPPTTPAPPVCYPGSN 527
PG+ P+ P TP++ AP P ++ PR P PP PP P P
Sbjct: 400 PGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEA 459
Query: 528 DPRCPRPTPTTPP---PPQCYLGSPDPRCPRPLPSSPSPPVCYPG 569
P P PP LG P +PS P + G
Sbjct: 460 SPVPGAPDSVASASDAPPT--LGDPSD----TAEHTPSGPRTWDG 498
Score = 32.3 bits (73), Expect = 1.2
Identities = 26/125 (20%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
PS + PA + P P + P +P PR P
Sbjct: 380 APSGSAAEGPASGGA-ATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
P P + P P PR P P P P + + PP + P P
Sbjct: 439 APPAPPRSGIPPRP--------APRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTP 490
Query: 425 RPPPS 429
P +
Sbjct: 491 SGPRT 495
Score = 32.0 bits (72), Expect = 1.6
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
PG+ P+ P TP++ P + P +P P P P P P P
Sbjct: 400 PGTQGPQGTAPAAGMTPSSAA-----PATPAP-SAAPSPRVPWDDAPPAPPRSGIPPRPA 453
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPR-CPTRPPPPPPPPPTT 516
P SP P P + + P+ P P T
Sbjct: 454 PRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
Score = 30.8 bits (69), Expect = 3.6
Identities = 29/104 (27%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 353 PGSPDPRCPRPPPSPTPTT-TPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
PG+ P+ P TP++ P TPAP + PR P PP PP R P
Sbjct: 400 PGTQGPQGTAPAAGMTPSSAAPATPAP----SAAPSPRVPWDDAPPAPP----RSGIPPR 451
Query: 412 PICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P P P + + P + P PS P T
Sbjct: 452 PAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
Score = 30.8 bits (69), Expect = 3.7
Identities = 27/106 (25%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 274 GKGLKITTPRPTTQPPPICYPG------SPDPRCPRPPPSPTPTT-------TPAPICYP 320
G T P P TQ P P S P P P +P+P P P
Sbjct: 390 ASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIP 449
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
PR P P P P + + PP + P P P +
Sbjct: 450 PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 33.7 bits (77), Expect = 0.57
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
PP+P + PAP P P P P P +
Sbjct: 17 TPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEPFKAS 56
Score = 30.6 bits (69), Expect = 4.8
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 367
PP P + P P P +P PRP P
Sbjct: 13 KEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEP 52
Score = 30.6 bits (69), Expect = 4.8
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 430
PP P + P P P +P PRP P
Sbjct: 13 KEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEP 52
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 32.8 bits (75), Expect = 0.59
Identities = 22/76 (28%), Positives = 25/76 (32%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
P P P P P P P P P P P+P +P P P P
Sbjct: 58 PEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Query: 362 RPPPSPTPTTTPTTPA 377
+ PPS T P P
Sbjct: 118 KKPPSKTAAKAPAAPN 133
Score = 31.3 bits (71), Expect = 2.0
Identities = 28/104 (26%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
+PT P P + P P PP PT P+P +P P P+ P+P
Sbjct: 49 LEAPTEEPQPEP---EPPEEQPKPPTEPETPPEPTPPKPKEKPKPE-----KKPKKPKPK 100
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTT 408
P P P P P P T P P RP +
Sbjct: 101 PKPKPKPKPKVKPQ----PKPKKPPSKTAAKAPAAPNQPARPPS 140
Score = 30.5 bits (69), Expect = 3.2
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P+P P P P + P P P P P+P +P P P
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPK--PKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
Query: 421 PRCPRPPPSPTPTTTPAP 438
P+ PPS T PA
Sbjct: 114 QPKPKKPPSKTAAKAPAA 131
Score = 29.4 bits (66), Expect = 8.8
Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
T P P + P P PP PT P+P +P P P
Sbjct: 45 AAKVLEAPTEEPQPEP----EPPEEQPKPPTEPETPPEPTPPKPKEKPKP---EKKPKKP 97
Query: 423 CPRPPPSPTPTTTPAP 438
P+P P P P P
Sbjct: 98 KPKPKPKPKPKPKVKP 113
>gnl|CDD|206498 pfam14330, DUF4387, Domain of unknown function (DUF4387). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea and
eukaryotes. Proteins in this family are approximately
110 amino acids in length. There is a conserved RSKN
sequence motif.
Length = 99
Score = 31.0 bits (71), Expect = 0.61
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 266 TKYYFWDDGKGLKITTPRPTTQ 287
K+ +D +KIT PRP
Sbjct: 56 LKFVEFDPANAIKITIPRPIPS 77
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 33.4 bits (76), Expect = 0.61
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 518 APPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPS-------SPSPPVCYPGS 570
+P + + P T P + R P L S + +
Sbjct: 4 SPNLSSATAASPAKSLSAFTPAPTR---SSASSARFPAFLARPAAARSPSLASRASSALA 60
Query: 571 PDPRCP-RPPSPTPEYVCYPGSID 593
P P P PEY+ P ID
Sbjct: 61 ASPSRPQVARRPRPEYI--PNRID 82
Score = 32.2 bits (73), Expect = 1.3
Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 6/68 (8%)
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL---VCYPGSSDPRCP 503
SP + T P + R P P L ++ P P
Sbjct: 10 ATAASPAKSLSAFTPAPTRS---SASSARFPAFLARPAAARSPSLASRASSALAASPSRP 66
Query: 504 TRPPPPPP 511
P P
Sbjct: 67 QVARRPRP 74
Score = 29.9 bits (67), Expect = 6.6
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 474 PRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP- 532
P S + TPAP +S R P P + A + P P
Sbjct: 10 ATAASPAKSLSAFTPAPTRS--SASSARFPAFLARPAAARSPSLASRASSALAASPSRPQ 67
Query: 533 ---RPTPTTPP 540
RP P P
Sbjct: 68 VARRPRPEYIP 78
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 33.3 bits (77), Expect = 0.62
Identities = 12/67 (17%), Positives = 13/67 (19%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
PP P +P P P PD P
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450
Query: 486 TTPAPLV 492
P P V
Sbjct: 451 AAPQPAV 457
Score = 33.0 bits (76), Expect = 0.91
Identities = 14/87 (16%), Positives = 15/87 (17%), Gaps = 16/87 (18%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
PP P P P P + P V
Sbjct: 391 PPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAAALAAV----------- 436
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGS 418
P P P P P S
Sbjct: 437 --PDAAAAAAAPPAPAAAPQPAVRLNS 461
Score = 32.2 bits (74), Expect = 1.3
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
P +P PP G P P +P AP P ++ P PP
Sbjct: 391 PPSPGGGGGGPP---GGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447
Query: 514 PTTPAPP 520
AP
Sbjct: 448 APAAAPQ 454
Score = 31.8 bits (73), Expect = 1.7
Identities = 12/75 (16%), Positives = 16/75 (21%), Gaps = 5/75 (6%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P+ PP P PG+ P+ P A
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA-----AP 446
Query: 388 PRCPTRPPPPPPPPT 402
P P P +
Sbjct: 447 PAPAAAPQPAVRLNS 461
Score = 31.8 bits (73), Expect = 2.1
Identities = 14/77 (18%), Positives = 17/77 (22%), Gaps = 6/77 (7%)
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
PP P P P P + PA + P +
Sbjct: 391 PPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAA---ALAAVPDAAAAAA 444
Query: 455 TTPRPTTQPPPVCYPGS 471
P P P P S
Sbjct: 445 APPAPAAAPQPAVRLNS 461
Score = 30.3 bits (69), Expect = 5.4
Identities = 11/84 (13%), Positives = 13/84 (15%), Gaps = 11/84 (13%)
Query: 285 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT 344
PP G P P +P P P P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGA-----------AAAAPAAGGPAAALAAV 436
Query: 345 TQPPPICYPGSPDPRCPRPPPSPT 368
P+P
Sbjct: 437 PDAAAAAAAPPAPAAAPQPAVRLN 460
Score = 29.5 bits (67), Expect = 9.6
Identities = 11/74 (14%), Positives = 14/74 (18%), Gaps = 9/74 (12%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
P P P PA ++ P P P +
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPA-----AAAAPGAAAAAPAAGGPAAALAAVP----DAAAA 442
Query: 529 PRCPRPTPTTPPPP 542
P P P
Sbjct: 443 AAAPPAPAAAPQPA 456
Score = 29.5 bits (67), Expect = 9.7
Identities = 13/77 (16%), Positives = 15/77 (19%), Gaps = 7/77 (9%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
PSP P P + A L P +
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDA-------AAAAA 444
Query: 510 PPPPPTTPAPPVCYPGS 526
PP P P S
Sbjct: 445 APPAPAAAPQPAVRLNS 461
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 33.3 bits (76), Expect = 0.63
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 468 YPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSN 527
P + P+ P+P+ P P P P P P P P P +
Sbjct: 387 IPANLLHNAPQAAPAPSAAAPEP-------------KHQPAPEPRPVLAPTPASGEPNAA 433
Query: 528 DPRCPRPT 535
R T
Sbjct: 434 AVRSMWST 441
Score = 32.2 bits (73), Expect = 1.4
Identities = 14/58 (24%), Positives = 19/58 (32%)
Query: 373 PTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 430
PA G P +P PPP + + + + G DP PR P
Sbjct: 510 TGKPAAAASPAGGGANAPPAKPVKPPPSCLSAQRDEEESMLAEAGRDDPSTPRRDPEE 567
Score = 31.8 bits (72), Expect = 2.1
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 616 PRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPD 659
P PQ +P P P + P P PT G P+
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPN 431
Score = 31.4 bits (71), Expect = 2.4
Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 16/76 (21%)
Query: 292 CYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPIC 351
C G P SP AP P +P PPP + + + +
Sbjct: 508 CETGKPAA-----AASPAGGGANAP-----------PAKPVKPPPSCLSAQRDEEESMLA 551
Query: 352 YPGSPDPRCPRPPPSP 367
G DP PR P
Sbjct: 552 EAGRDDPSTPRRDPEE 567
Score = 31.0 bits (70), Expect = 3.4
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 293 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
P + P+ P+P+ P +P P P P P P + P
Sbjct: 387 IPANLLHNAPQAAPAPSAAA------------PEPKHQPAPEPRPVLAPTPASGEP 430
Score = 31.0 bits (70), Expect = 3.6
Identities = 10/49 (20%), Positives = 11/49 (22%), Gaps = 8/49 (16%)
Query: 494 YPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P + P P P P P PRP P
Sbjct: 387 IPANLLHNAPQAAPAPSAAAPEPKHQP--------APEPRPVLAPTPAS 427
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 33.5 bits (77), Expect = 0.64
Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
+ P ++ P S PR R PS + + PL
Sbjct: 3 SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLS----- 57
Query: 389 RCPTRPPPPPPPPTTPRPTTQPP 411
P PP P TTQ P
Sbjct: 58 -----SPSPPSVTLPPAATTQTP 75
Score = 33.1 bits (76), Expect = 0.76
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
S + ++ P++ +P + P P P + +
Sbjct: 15 SSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQT 74
Query: 421 PR 422
P+
Sbjct: 75 PQ 76
Score = 32.7 bits (75), Expect = 1.1
Identities = 28/113 (24%), Positives = 36/113 (31%), Gaps = 22/113 (19%)
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTT 538
S P++ +P S P P P ++P+PP P T T
Sbjct: 21 SSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLP------PAATTQT 74
Query: 539 PP--PPQ-----------CYLGSPDPRCPRPLPSSPSPPVCYPG--SPDPRCP 576
P P Q L S R PLP + P V G +P P P
Sbjct: 75 PQLNPLQRAAAAALDAVESALVSHLER-QHPLPKTADPAVQIAGNFAPVPEQP 126
Score = 31.2 bits (71), Expect = 2.9
Identities = 7/56 (12%), Positives = 13/56 (23%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 359
S P++T + P P P + + P+
Sbjct: 21 SSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQTPQ 76
Score = 31.2 bits (71), Expect = 3.0
Identities = 15/73 (20%), Positives = 19/73 (26%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
+ P ++ P S PR R PS + I P
Sbjct: 3 SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPP 62
Query: 452 PPPTTPRPTTQPP 464
P TTQ P
Sbjct: 63 SVTLPPAATTQTP 75
Score = 30.8 bits (70), Expect = 3.4
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 311 TTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 370
+++ P S+ + PP +T + P P P +P+
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
Query: 371 TTPTTPAP 378
T P
Sbjct: 61 PPSVTLPP 68
Score = 30.1 bits (68), Expect = 6.2
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
P +++ + + P T P P P+ P + P
Sbjct: 1 SSSSNPTSRSQSHASSSSSS---SSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLS 57
Query: 357 DPRCPRPPPSPTPTTTPTTPAPL 379
P P P TT PL
Sbjct: 58 SPSPPSVTLPPAATTQTPQLNPL 80
Score = 29.7 bits (67), Expect = 9.0
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 7/81 (8%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 415
P +++ ++ + + P T P P P+ P +
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQ-------SSPPSSTSPRPRRRKPSASSLLHTPSILPL 53
Query: 416 PGSPDPRCPRPPPSPTPTTTP 436
P P P P TT
Sbjct: 54 PKLSSPSPPSVTLPPAATTQT 74
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 32.6 bits (74), Expect = 0.70
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 506 PPPPPPPPPTTPAPPVCYP 524
PPPPPPP PAPPV P
Sbjct: 121 PPPPPPPARAEPAPPVARP 139
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 33.0 bits (75), Expect = 0.76
Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 354 GSPDPRCPRPPPSPT--PTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
G PPS T P PAP+ PP PP +PT P
Sbjct: 51 GRSKKENEPAPPSTMIATNTKPFHPAPI------------DVPPDPPAAQEAVQPTAPPS 98
Query: 412 PICYPGSPDPRCPRPPPSP 430
P+ PRP +P
Sbjct: 99 A---QSEPERNEPRPEETP 114
Score = 31.8 bits (72), Expect = 1.6
Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 19/78 (24%)
Query: 295 GSPDPRCPRPPPSPTPTTT-----PAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 349
G PPS T PAPI PP PP +PT P
Sbjct: 51 GRSKKENEPAPPSTMIATNTKPFHPAPI-----------DVPPDPPAAQEAVQPTAPPSA 99
Query: 350 ICYPGSPDPRCPRPPPSP 367
P+ PRP +P
Sbjct: 100 ---QSEPERNEPRPEETP 114
Score = 30.6 bits (69), Expect = 3.8
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 470 GSPDPRCPRPPPSPT------PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCY 523
G PPS P PAP+ P P PT P
Sbjct: 51 GRSKKENEPAPPSTMIATNTKPFHPAPIDV--------PPDPPAAQEAVQPTAPPSAQSE 102
Query: 524 PGSNDPRCPRPTP 536
P N+PR P TP
Sbjct: 103 PERNEPR-PEETP 114
Score = 29.9 bits (67), Expect = 7.6
Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 417 GSPDPRCPRPPPSPTPTTT-----PAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGS 471
G PPS T PAPI + P P +PT P
Sbjct: 51 GRSKKENEPAPPSTMIATNTKPFHPAPI-----DVPPDPPAAQEAVQPTAPPSA---QSE 102
Query: 472 PDPRCPRPPPSP 483
P+ PRP +P
Sbjct: 103 PERNEPRPEETP 114
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 32.8 bits (74), Expect = 0.80
Identities = 22/120 (18%), Positives = 31/120 (25%), Gaps = 3/120 (2%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
P P++ + P P + TT T A V +
Sbjct: 300 PVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATT--TQASAVALSSAGVLPSD 357
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
P P QP P+ + + TT P P SN P P+
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAA-PASNIPVSPT 416
Score = 30.5 bits (68), Expect = 4.1
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 5/112 (4%)
Query: 434 TTPAPICYPGSNDPRCPSPPPT---TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
T P P S + + P+ P P P V + + S P+
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357
Query: 491 LVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
+ + P P P P +T G+ PT + P P
Sbjct: 358 VTLPGTVALP--AAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAP 407
Score = 30.1 bits (67), Expect = 5.3
Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 16/149 (10%)
Query: 258 DLKFKNMNTKYYFWDDGKGLK---ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 314
D++ +N++ + + GLK P P S + PS +P
Sbjct: 271 DIEHENLDNRALDIEKATGLKQIDTHGTVPVAAVTP----SSAVTQSSAITPSSAAIPSP 326
Query: 315 APICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP-GSPDPRCPRPPPSPTPTT-- 371
A I + T+ P+ P + +P +P P T T
Sbjct: 327 AVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQ 386
Query: 372 ------TPTTPAPLVCYPGSNDPRCPTRP 394
T T P P + P P
Sbjct: 387 SSTGNITSTANGPTTSLPAAPASNIPVSP 415
Score = 30.1 bits (67), Expect = 5.5
Identities = 20/118 (16%), Positives = 29/118 (24%), Gaps = 9/118 (7%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP--TTPAPLVCYPGS----SDPRCPT 504
+ P++ + P P + TT A V + SD P
Sbjct: 303 AVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG 362
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P P P+ + T T P +P P S S
Sbjct: 363 TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIP---VSPTS 417
Score = 30.1 bits (67), Expect = 5.6
Identities = 20/118 (16%), Positives = 26/118 (22%), Gaps = 6/118 (5%)
Query: 408 TQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVC 467
T P P S + PS +PA I + + + P
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357
Query: 468 YPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSD------PRCPTRPPPPPPPPPTTPAP 519
P P P SS PT P P +P
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 32.9 bits (75), Expect = 0.84
Identities = 21/163 (12%), Positives = 33/163 (20%), Gaps = 12/163 (7%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
PP + + P P + P
Sbjct: 140 KRPPKEKEKEKEKKVE------EPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Query: 394 PPPPPPPPTTPRPTTQPPPI------CYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
+ + P + D P + + I S+
Sbjct: 194 EKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSL 253
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
+ P P P+ P T+ P P P PAP
Sbjct: 254 KKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAP 296
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 32.8 bits (75), Expect = 0.89
Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
PP PP PT + +P P P T TTP + P
Sbjct: 197 PPEPPEPTVDEAAPETEV---EATPAAESPAEPAEETAETTPEE---TEDAPEEENNKPV 250
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
P P P YP +P P P P P+ P
Sbjct: 251 KPPVPKPYISPDEYPSAPLP--PELPQLLQPSLVIPF 285
Score = 29.3 bits (66), Expect = 8.7
Identities = 21/97 (21%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
PP PP PT + P + P P + T + P
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPE-------EENNKP 249
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 428
+PP P P + + P P P P P P
Sbjct: 250 VKPPVPKPYISPDEYPSAPLPPELPQLLQPSLVIPFP 286
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 32.7 bits (75), Expect = 0.93
Identities = 14/51 (27%), Positives = 14/51 (27%), Gaps = 6/51 (11%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
PR P PP PP P P PP D P A
Sbjct: 253 PRATRLPAPPQPPEEEPPPPPPPPE------DDDDPPEDEEEQDDAEDRAL 297
Score = 31.5 bits (72), Expect = 2.0
Identities = 14/47 (29%), Positives = 14/47 (29%), Gaps = 14/47 (29%)
Query: 474 PRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
PR R P P P P PPPPPP P
Sbjct: 253 PRATRLPAPPQPPEEEP--------------PPPPPPPEDDDDPPED 285
Score = 30.0 bits (68), Expect = 6.7
Identities = 13/46 (28%), Positives = 13/46 (28%), Gaps = 6/46 (13%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 370
PR P PP PP P P PP D P
Sbjct: 253 PRATRLPAPPQPPEEEPPPPPPPPE------DDDDPPEDEEEQDDA 292
Score = 29.6 bits (67), Expect = 8.5
Identities = 14/50 (28%), Positives = 14/50 (28%), Gaps = 15/50 (30%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
PR R P P P P PPPPPP P
Sbjct: 253 PRATRLPAPPQPPEEEPP---------------PPPPPPEDDDDPPEDEE 287
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as the
sole source of carbon and energy in S. cerevisiae, and
is mediated by glycerol kinase and glycerol 3-phosphate
dehydrogenase, which is encoded by the GUT2 gene.
Members in this family show high similarity to their
prokaryotic and eukaryotic homologs. GKs belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 496
Score = 32.8 bits (75), Expect = 0.94
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 170 IPITTYIQYNSSPVRQNLLLKNVPDYSASREENDLGFITFD--LQANLTKIFNWNV 223
+P++TY S V+ +L NVP+ + ++ DL F T D L NLT V
Sbjct: 133 LPLSTY----FSSVKLRWMLDNVPEVKKAYDDGDLAFGTVDSWLIYNLTGGPKTKV 184
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 32.3 bits (74), Expect = 1.1
Identities = 15/63 (23%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 338 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP 397
P P Y SP P PP P V Y G P
Sbjct: 180 PPLSLLDGSDVPELYGFSPAVL-PPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAG 238
Query: 398 PPP 400
PP
Sbjct: 239 RPP 241
Score = 30.8 bits (70), Expect = 3.9
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT-PAPLVCYPGSSDPRCPTRPPPPP 510
PP + + P + + P P P T V Y G P
Sbjct: 180 PPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAGR 239
Query: 511 PP 512
PP
Sbjct: 240 PP 241
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 32.6 bits (74), Expect = 1.1
Identities = 32/237 (13%), Positives = 46/237 (19%), Gaps = 26/237 (10%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
P PPP P S + T P P
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKP------------SLG 571
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P T + G+ +P S + P +D + +
Sbjct: 572 KFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGP-----GSDLKPATLN 626
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
TP + + + P T + D P
Sbjct: 627 GKTPSSSLVGAA---RNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKND 683
Query: 514 PT-TPAPPVCYPGSNDPRCPRPTP-----TTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
P G + P P P R L S+ SP
Sbjct: 684 PYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPG 740
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 32.7 bits (75), Expect = 1.2
Identities = 25/167 (14%), Positives = 37/167 (22%), Gaps = 11/167 (6%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
P + AP+ + P P P TT P I P + P+
Sbjct: 874 PVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITE 933
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P+V T +P + P +P
Sbjct: 934 SDVAVAQEVAEHAEPVV-------EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE 986
Query: 424 PRPP----PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPV 466
+ P PA + +P P P P
Sbjct: 987 VAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 31.8 bits (72), Expect = 1.2
Identities = 25/115 (21%), Positives = 27/115 (23%), Gaps = 6/115 (5%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP-SPTPTTTPTTPAPLVCYPGSNDPR 389
P PP P P P P PP A +
Sbjct: 42 PLPPKPQGDRDEPRVLPAV-----VQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQ 96
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGS 444
P P P P PP P P P P P P P PA +
Sbjct: 97 PPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQA 151
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 32.5 bits (74), Expect = 1.2
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPT 392
PPPP P+ P PD P+ P P TP PGS+D T
Sbjct: 1013 TPPPPEHEPQAPKPPT-----QDPDGSKPKDKVDPKDNKDPLTP------PGSDDENGET 1061
Query: 393 RPPPPPPPPTTP 404
P
Sbjct: 1062 PKGNEEKKEEQP 1073
Score = 31.8 bits (72), Expect = 2.0
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 829 RTPSPTTPAPPQCYP--GSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSP 881
+TP P P P PD P+ P P PGS D P +
Sbjct: 1012 KTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENGETPKGNE 1066
Score = 31.8 bits (72), Expect = 2.0
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 853 PPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPD 895
PPP P P+ PD P+ + P P PGS D
Sbjct: 1014 PPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDD 1056
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 32.5 bits (74), Expect = 1.2
Identities = 19/76 (25%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 468 YPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSN 527
P + +P APL + P PPP PP P P S
Sbjct: 42 GAAGPVAKAAEQMAAPEAAEAAPL--PAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSA 99
Query: 528 DPRCPR-PTPTTPPPP 542
P P P P P
Sbjct: 100 VPAPSAAPAPAEPVEP 115
Score = 31.3 bits (71), Expect = 3.0
Identities = 16/75 (21%), Positives = 18/75 (24%), Gaps = 4/75 (5%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT-TQPPPICYPGSPDPRCPR 362
P P + P PPP PP P P P P
Sbjct: 54 MAAPEAAEAAPLP---AAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPA 110
Query: 363 PPPSPTPTTTPTTPA 377
P P+ P A
Sbjct: 111 EPVEPSLAANPFAAA 125
Score = 31.3 bits (71), Expect = 3.1
Identities = 16/72 (22%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLV-CYPGSSDPRCPTRPPP 508
P P P P PP P P S+ P P P
Sbjct: 51 AEQMAAPEAAEAAPLPAAAESIASPEVP-PPVPPAPAQEGEAPAAEQPSAVPAPSAAPAP 109
Query: 509 PPPPPPTTPAPP 520
P P+ A P
Sbjct: 110 AEPVEPSLAANP 121
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 32.3 bits (73), Expect = 1.2
Identities = 29/163 (17%), Positives = 40/163 (24%), Gaps = 13/163 (7%)
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP 401
+ T P + P + + T A V PR + P P
Sbjct: 280 KCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLP 339
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTT 461
T + P P + P P+ P P PPP P+
Sbjct: 340 TD---IGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIP------TPVPPPGLAIPSL 390
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT 504
PP G P P +P P + T
Sbjct: 391 VAPP----GLVAPTEINPSFLASPRKKMKREKLPVTFGALDDT 429
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 32.3 bits (73), Expect = 1.2
Identities = 80/406 (19%), Positives = 105/406 (25%), Gaps = 50/406 (12%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
RPP P P P+ P+P P P P + AP P + P
Sbjct: 417 RPPVEKPRPEVPQSLETATSHGSAQVPEPP-PVHDLEPGPLHDQHSMAPC---PVAQLPP 472
Query: 390 CPTRPPPP----PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPIC---YP 442
P + P P RP P P P P R S P AP+ P
Sbjct: 473 GPLQDLEPGDQLPGVVQDGRPACAPVPA--PAGPIVRPWEASLSQVPGVAFAPVMPQPMP 530
Query: 443 GSNDPR---------CPSPPP---TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
P CP+PP P T+ V P P P PP SP+
Sbjct: 531 VEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQM---S 587
Query: 491 LVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD 550
+ PP P + P Q
Sbjct: 588 VRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFSQVADVMRA 647
Query: 551 PRCPRPLPSSPSPPVCYPGSPDP--------RCPRPPSP--TPEYVCYPGSID------- 593
P P P+ P S P PP P P+Y P +
Sbjct: 648 GGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASA 707
Query: 594 ----PRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSP 649
P+ P P E ++ + G+ + RP Q L + P
Sbjct: 708 AHFLPQQPMEGPLVPERWM-FQGATLSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQ 766
Query: 650 TPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIP 695
P P P+ PP + L +V +P
Sbjct: 767 PPMEGPWVPEQWMFQGAPPSQGTDVVQHQLDALGYVLHVLNHPGVP 812
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 31.8 bits (72), Expect = 1.3
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 328 PTRPPPPPPPPTTPRPTTQP---PPICYPGSPDPRCPRPPPSPTPTTTPTTPA 377
P PP P PT P +T P P + P +P RPP + P PA
Sbjct: 14 PQLPPAPDDYPTFPDKSTWPVVFPEL--PPAPYGGPCRPPQHTSKAAAPRIPA 64
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 31.9 bits (72), Expect = 1.4
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
PP+ PT P P+ P+ P +P P P PT QP P+ + P
Sbjct: 20 PPAAAPTPQPNPVI-----QPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAP 74
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP 404
P P P A L P PPPP TP
Sbjct: 75 AQPAPAAPPAAGAAL-----------PEALEVPPPPAFTP 103
Score = 31.2 bits (70), Expect = 2.2
Identities = 21/81 (25%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 444 SNDPRCPSPPPTTPRPTTQPPPVCYPGSP----DPRCPRPPPSPTPTTPAPLVCYPGSSD 499
+N P +P P P P QP PG P P P P PT+ +
Sbjct: 17 ANVPPAAAPTPQ-PNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPA 75
Query: 500 PRCPTRPPPPPPPPPTTPAPP 520
P PP P P
Sbjct: 76 QPAPAAPPAAGAALPEALEVP 96
Score = 31.2 bits (70), Expect = 2.4
Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 427 PPSPTPTTTPAPICYPGS-NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
PP+ PT P P+ P + P P P PT QP PV + P P P
Sbjct: 20 PPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAP 79
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
P P PPP P
Sbjct: 80 AAPPAAG----------AALPEALEVPPPPAFTPN 104
Score = 30.8 bits (69), Expect = 2.9
Identities = 19/79 (24%), Positives = 24/79 (30%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
PP TP+P P P P+ PT P + + + P P
Sbjct: 20 PPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAP 79
Query: 394 PPPPPPPPTTPRPTTQPPP 412
PP P PPP
Sbjct: 80 AAPPAAGAALPEALEVPPP 98
Score = 30.4 bits (68), Expect = 4.0
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
PT QP P+ P +P P P +P P P P P P P
Sbjct: 23 AAPTPQPNPVIQPQAPVQ--PGQPGAPQQLAIPTQQPQPV---PTSAMTPHVVQQAPAQP 77
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTP 369
P P P+ PPP+ TP
Sbjct: 78 APAAPPAAG--AALPEALEVPPPPAFTP 103
Score = 29.6 bits (66), Expect = 6.5
Identities = 23/94 (24%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
PP+ PT P P+ P +P P P PT QP P+
Sbjct: 20 PPAAAPTPQPNPVIQ---------PQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVV 70
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
+ P P P PA P P T
Sbjct: 71 QQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPN 104
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 32.1 bits (73), Expect = 1.5
Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 620 RPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGL 679
P P + PG P P +PS P Y GS R P P + GL
Sbjct: 28 NPYYPSSFGSSWDRPGPPVP--EDYDAPSHRPPPYGGSNGDRHGGYQPLGQQDPSLYAGL 85
Score = 30.6 bits (69), Expect = 4.4
Identities = 25/111 (22%), Positives = 31/111 (27%), Gaps = 20/111 (18%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
P + P + P G ++P P+ P P P P RP
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAP----------SHRP 57
Query: 364 PPSPTPTTTPTTP-APLVCYPGSNDPRCPTRPPPP-----PPPPTTPRPTT 408
PP PL G DP PPPP +PR
Sbjct: 58 PPYGGSNGDRHGGYQPL----GQQDPSLYAGLGQNGGGGLPPPPYSPRDQG 104
Score = 29.4 bits (66), Expect = 8.9
Identities = 20/105 (19%), Positives = 27/105 (25%), Gaps = 25/105 (23%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P + P + P G ++P PS ++ PG P P P P
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDR---------PGPPVPEDYDAPSHRPP 58
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPP-------------PPPPTTP 517
P P PPPP +P
Sbjct: 59 PYGGS---NGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSP 100
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 32.1 bits (73), Expect = 1.6
Identities = 22/113 (19%), Positives = 31/113 (27%), Gaps = 9/113 (7%)
Query: 421 PRCPRPP-PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRP 479
PR + P SP P Y + P PR + P P+ PG P RP
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPM-GPGGP----LRP 434
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP 532
+ ++ P P PP + P+
Sbjct: 435 N---GLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTA 484
Score = 32.1 bits (73), Expect = 1.6
Identities = 22/108 (20%), Positives = 26/108 (24%), Gaps = 8/108 (7%)
Query: 299 PRCPRPP-PSPTPTTTPAPICY---PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 354
PR + P SP P Y P P P PT P P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAP 439
Query: 355 SPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
R P + P++ P P P P T
Sbjct: 440 MNAVRA--PSRNAQNAAQKPPMQPVMYPPNYQSL--PLSQDLPQPQST 483
Score = 31.3 bits (71), Expect = 2.9
Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 16/93 (17%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTR-----PPPP 334
P+ P+ +P P P P P N R P+R P
Sbjct: 403 QGPQQQFNGQPLGWPRMS----MMPTPM-GPGGPLRPNGLAPMNAVRAPSRNAQNAAQKP 457
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP 367
P P P Q P+ P+P +
Sbjct: 458 PMQPVMYPPNYQSLPL------SQDLPQPQSTA 484
Score = 31.3 bits (71), Expect = 3.0
Identities = 20/102 (19%), Positives = 27/102 (26%), Gaps = 18/102 (17%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS-PTPTTTPTTPAPLVCYPGSNDPRCPT 392
PP P+ P+ +P P P P P AP+
Sbjct: 398 PPYYGQGPQQQFNGQPLGWPRMS----MMPTPMGPGGPLRPNGLAPMN----------AV 443
Query: 393 RPPPPPPPPTTPRPTTQPPPICY-PGSPDPRCPRPPPSPTPT 433
R P +P P+ Y P + P P T
Sbjct: 444 RAPSRNAQNAAQKPP--MQPVMYPPNYQSLPLSQDLPQPQST 483
Score = 30.2 bits (68), Expect = 6.4
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 9/72 (12%)
Query: 825 AHFYRTPSPTTPAP--PQCYPGS---PDPRCPRPPPSPTTPAPP---QCYPGSPDPRCPR 876
Y P P +P P P P P P AP + + +
Sbjct: 397 QPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQK 456
Query: 877 PPLSPTTPAPPQ 888
PP PP
Sbjct: 457 PP-MQPVMYPPN 467
>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 31.8 bits (72), Expect = 1.7
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 306 PSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP-GSPDPRCPRPP 364
P + + TR P P P P C G+ P P+P
Sbjct: 8 PHLHHSYSSLDRREKTCLRSSQKTRRFPKPKASLHPSIKRSRPGRCSTNGAAVPESPKPS 67
Query: 365 -------PSPTPTTTPTTP 376
P+ +P TT
Sbjct: 68 RRGRKKKPTSSPPKAKTTR 86
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 31.9 bits (72), Expect = 1.7
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
R P T+P+ PPP G R R PP P +P P ++D
Sbjct: 262 RGRRRRKRSPRTSPKRFRSPPPRKARGRSPRRLIRSPPPPGRLRSPPP---LHASDSPVA 318
Query: 451 SP 452
SP
Sbjct: 319 SP 320
Score = 31.1 bits (70), Expect = 3.1
Identities = 25/122 (20%), Positives = 33/122 (27%), Gaps = 6/122 (4%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
R P SP +P P G + R PP R + PP + D
Sbjct: 261 ERGRRRRKRSPRTSPKRFRSPPPRKARGRSPRRLIRSPPPPGRLRSPPP----LHASDSP 316
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPT 535
P +PL PG + R + P P P P + R
Sbjct: 317 VASPHVGELGVNFSPLAFRPGLT--RTKSLPRTPNPFHRLEYILPFNERDERESSTTRDV 374
Query: 536 PT 537
Sbjct: 375 HV 376
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 31.4 bits (71), Expect = 1.8
Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 14/121 (11%)
Query: 370 TTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 429
+T PT PA + N R + P T RP + I +P+ P+
Sbjct: 121 STLPTEPATVAPVRNGNASRQTAKTQTAERPAT-TRPARKQAVI------EPKKPQATAK 173
Query: 430 PTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPA 489
P P +P P P T+ P P P SP TT
Sbjct: 174 TEPKPVAQT---PKRTEPAAPVASTKAPAATSTPAP----KETATTAPVQTASPAQTTAT 226
Query: 490 P 490
P
Sbjct: 227 P 227
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 31.3 bits (71), Expect = 1.8
Identities = 22/107 (20%), Positives = 25/107 (23%), Gaps = 11/107 (10%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCP 391
P P T P P P P PAP V + P
Sbjct: 102 MSEPATENKPAEVTTPVE-----------PMGLPETPPAVPVPAPAPAVAAAAAQAAAAP 150
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P P P P P + + P PT T P
Sbjct: 151 KAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATP 197
Score = 29.8 bits (67), Expect = 4.5
Identities = 21/99 (21%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
T P TT P+ G P+ PP P P PA +
Sbjct: 100 TSMSEPATENKPAEVTTPVEPM---GLPET----PPAVPVPAPAPAVAAAAAQA----AA 148
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
P +P + P +P P T AP
Sbjct: 149 APKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAP 187
Score = 29.8 bits (67), Expect = 5.2
Identities = 22/121 (18%), Positives = 26/121 (21%), Gaps = 18/121 (14%)
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
P P TTP P P PP P P P + P+ P
Sbjct: 102 MSEPATENKPAEVTTPVE---PMG----LPETPPAVPVPAPAPAVAA-AAAQAAAAPKAP 153
Query: 481 PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
P +P P P P P + P T
Sbjct: 154 AKPRAKSP----------RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTK 203
Query: 541 P 541
Sbjct: 204 K 204
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 32.0 bits (73), Expect = 1.8
Identities = 9/58 (15%), Positives = 10/58 (17%), Gaps = 4/58 (6%)
Query: 311 TTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPT 368
T A P PP Q P G + T
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAP----AGRVEREKTARSSEST 278
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 31.1 bits (71), Expect = 2.0
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 493 CYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDP 529
C P + P C P PPP T P C G
Sbjct: 91 CQP-YTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKT 126
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 31.8 bits (72), Expect = 2.0
Identities = 36/218 (16%), Positives = 49/218 (22%), Gaps = 19/218 (8%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP--------TTQPPPVC 467
PGS P S T P + R +P + R +P
Sbjct: 390 PGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLAS 449
Query: 468 YPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP-----PPPTTPAPPVC 522
P S T + L+ P + P P + PP+
Sbjct: 450 IPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPLS 509
Query: 523 YPGSNDPRCPRPTPTTPPP--PQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPS 580
PTP+ P L P V G+ R S
Sbjct: 510 P---RQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVS 566
Query: 581 PTPEYVC-YPGSIDPRCPRPPPTTQETYVCYPGSIDPR 617
+ R P P + T S P
Sbjct: 567 DIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPS 604
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 30.9 bits (70), Expect = 2.0
Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 18/72 (25%)
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
+ P P + TT+P S TP T+ P N
Sbjct: 136 KAPAEYYSPKHSSSQGTSTTRPSD---------------GSATPNTSAPP---TPGNPAA 177
Query: 449 CPSPPPTTPRPT 460
P P TP+
Sbjct: 178 QPEKPAETPKGN 189
Score = 30.2 bits (68), Expect = 3.6
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 473 DPRCPRPPPSPTPTT-PAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
T TT P+ P +S P P P P P TP
Sbjct: 141 YYSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKG 188
Score = 29.4 bits (66), Expect = 7.2
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT-TPRPT 407
P S + T+ T P+ P ++ P P P P P TP+
Sbjct: 142 YSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGN 189
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 31.6 bits (71), Expect = 2.2
Identities = 28/135 (20%), Positives = 38/135 (28%), Gaps = 22/135 (16%)
Query: 429 SPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
+P T A + + S T P + P P +P TP
Sbjct: 439 APDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATP 498
Query: 489 -------------APLVCYPGSSDPR--CPTRPPPPPPPPPTTPAPPVCYPG--SNDPRC 531
AP + G P CP PPP A P G +++
Sbjct: 499 NDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAE 558
Query: 532 P-----RPTPTTPPP 541
TP+ PPP
Sbjct: 559 AGGIGGNNTPSAPPP 573
Score = 30.4 bits (68), Expect = 4.8
Identities = 24/131 (18%), Positives = 35/131 (26%), Gaps = 12/131 (9%)
Query: 273 DGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPP 332
+GK + + PP + +PD + T + + PP
Sbjct: 418 EGKTAGPVSNQENNDVPP--WEDAPDEAQTAAGTAQTSAKSIQTASEAET--------PP 467
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR--C 390
P+ S +P P T T AP + G P C
Sbjct: 468 ENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDC 527
Query: 391 PTRPPPPPPPP 401
P PPP
Sbjct: 528 PPEDGAEIPPP 538
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 31.4 bits (72), Expect = 2.3
Identities = 8/51 (15%), Positives = 12/51 (23%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
S P + AP ++ P P P P +
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDI 133
Score = 31.0 bits (71), Expect = 2.8
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTT 538
S PA ++ P P PA P + DP P T
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAA-EVAADPDIPAGTEMV 140
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 31.5 bits (71), Expect = 2.3
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 821 KKEFAHFYRTPSPTTPAPPQCYP-GSPDPRCPRPPP-SPTTPAPPQCYPGSPDPRCPRPP 878
+K+F R PT P PPQ P P P P PQ + P+
Sbjct: 188 RKDFMLHDRNNWPTIPLPPQMAGQSMYQPPGPYPNAMVGRQPFYPQPGAVAGPPKRRGGH 247
Query: 879 LSPTTPAPPQ 888
+P Q
Sbjct: 248 KAPRGHRASQ 257
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 31.6 bits (72), Expect = 2.4
Identities = 12/56 (21%), Positives = 14/56 (25%), Gaps = 9/56 (16%)
Query: 489 APLVCYPGSSDPRCPT-RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
AP++ Y PPP P P T P P P
Sbjct: 102 APVIWYSEEEGEEILASSPPPIPEAVPATAEPS--------ESANAQFPAPPLTRA 149
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.8 bits (72), Expect = 2.4
Identities = 18/130 (13%), Positives = 27/130 (20%), Gaps = 17/130 (13%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT-----TTPTTPAPLVCYPGSNDP 388
P P P S + + A + G P
Sbjct: 1279 PAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKP 1338
Query: 389 RCPTRPPPPPPPPTTPR-PTTQPP----------PICYPGSPDPRCPRP-PPSPTPTTTP 436
+ PP R P T P G + R SP +
Sbjct: 1339 AAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSG 1398
Query: 437 APICYPGSND 446
+ + +N
Sbjct: 1399 SVLGRAATNK 1408
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 31.6 bits (72), Expect = 2.5
Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
R P P P + P +DP P P P T PP
Sbjct: 542 RRGPPYAEPPEPVSADTPPSL-QLDDPPTFPSALPLPHASGLSLPGTPPP 590
Score = 31.2 bits (71), Expect = 2.7
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR---PPPSPTPTTTPTTPAPLVC 381
+ PP P P + P DP P P + + P TP P
Sbjct: 540 QRRRGPPYAEPPEPVSADTPPSL-QLDDPPTFPSALPLPHASGLSLPGTPPPNYN 593
Score = 30.1 bits (68), Expect = 6.4
Identities = 12/52 (23%), Positives = 14/52 (26%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
P PP + TP L + P P P TP P
Sbjct: 542 RRGPPYAEPPEPVSADTPPSLQLDDPPTFPSALPLPHASGLSLPGTPPPNYN 593
>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP. This family of
genes is always found in type III secretion operons,
althought its function in the processes of secretion and
virulence is unclear. Hpa stands for Hrp-associated
gene, where Hrp stands for hypersensitivity response and
virulence.
Length = 201
Score = 30.6 bits (69), Expect = 2.5
Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
RP P P P P+ D P P PPP C P+PR P
Sbjct: 7 LARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTRASDPP- 65
Query: 563 PPVCYPGSPDPRCPRPPSPTPEY 585
P +P P P P+
Sbjct: 66 -----PEAPTDADPAQPPDDPDA 83
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.4 bits (71), Expect = 2.8
Identities = 23/116 (19%), Positives = 30/116 (25%), Gaps = 14/116 (12%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP--TTPRPTTQPPPICYPG--- 417
P +P P + TPA P P TP T Y
Sbjct: 267 PAQTPMPERSWQTPAQ--------TPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKP 318
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD 473
P P+ A P S+ PT R + PP+ S +
Sbjct: 319 EPIYTWEELLRERFPSDLFAISSLPDSDS-EASDSGPTRKRKRRRVPPLPEYSSDE 373
Score = 30.2 bits (68), Expect = 6.3
Identities = 12/77 (15%), Positives = 15/77 (19%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
P P R P P TP TP + P
Sbjct: 267 PAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIYTWEE 326
Query: 394 PPPPPPPPTTPRPTTQP 410
P ++ P
Sbjct: 327 LLRERFPSDLFAISSLP 343
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 31.2 bits (71), Expect = 2.8
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 18/55 (32%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
P P P PT TP PPP P P P I Y G+P
Sbjct: 3 GEPGPKPGPTPTP------------------PPPAPTPEPTPAKHERFIGYVGTP 39
Score = 29.7 bits (67), Expect = 8.5
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 22/59 (37%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 419
P P P PT T PPPP P P P I Y G+P
Sbjct: 3 GEPGPKPGPTPT----------------------PPPPAPTPEPTPAKHERFIGYVGTP 39
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 31.1 bits (71), Expect = 2.9
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 499 DPRCPTRPPPPPPPPP--TTPAPPVCYPGSNDPRC 531
DPR PPPP PP P P + R
Sbjct: 14 DPRPAVPPPPPRLLPPAAVPPPPLAAAAAARKLRG 48
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 30.9 bits (69), Expect = 3.0
Identities = 26/108 (24%), Positives = 31/108 (28%), Gaps = 10/108 (9%)
Query: 335 PPPPTTPRPTT------QPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
PPPPT + PP C P T PL N
Sbjct: 247 PPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLRPLPPSADDNIK 306
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
CP PPPP P + + + +P P PP TP
Sbjct: 307 ECPLALKPPPPLPPSVDDNLKECLL----APLPPSALPPSVDDNLKTP 350
Score = 29.8 bits (66), Expect = 6.5
Identities = 28/107 (26%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 409 QPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCY 468
QPPP S P TP P S D +P RP PP
Sbjct: 246 QPPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLRPL--PPSADD 303
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
P +PPP P+ L C P PP PP+
Sbjct: 304 NIKECPLALKPPPPLPPSVDDNL--------KECLLAPLPPSALPPS 342
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 30.9 bits (69), Expect = 3.2
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPV-CYPGSPDPRCPRPPPSPTPTTPAP 490
P P P P+ P Q P V P + P+ P PP P + P
Sbjct: 177 PSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEP 226
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 30.9 bits (70), Expect = 3.2
Identities = 21/126 (16%), Positives = 28/126 (22%), Gaps = 7/126 (5%)
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQ 462
++ + +P PR PP T P + P N
Sbjct: 120 QSAVSSTDMDDDFLADIEPE-PRLPP---GLTDPLQLADPVPNGFSADPLSALQSESLIA 175
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
P P P R +P + D PP P P
Sbjct: 176 QPD---PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPTISAS 232
Query: 523 YPGSND 528
P D
Sbjct: 233 QPAQRD 238
Score = 30.2 bits (68), Expect = 6.5
Identities = 24/136 (17%), Positives = 32/136 (23%), Gaps = 18/136 (13%)
Query: 427 PPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
P ++T + +P P PP P PV S DP S
Sbjct: 118 SPQSAVSSTDMDDDFLADIEPE-PRLPPGLTDPLQLADPVPNGFSADPLSALQSESLIA- 175
Query: 487 TPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYL 546
P+ P + D P +PP PQ
Sbjct: 176 --------QPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQ--- 224
Query: 547 GSPDPRCPRPLPSSPS 562
P S P+
Sbjct: 225 -----EGPTISASQPA 235
Score = 29.8 bits (67), Expect = 7.4
Identities = 28/112 (25%), Positives = 31/112 (27%), Gaps = 8/112 (7%)
Query: 480 PPSPTPTT--PAPLVC-YPGSSDPRCPTRPPPPPPPPPTTP---APPVCYPGSNDPRCPR 533
P P T P V D P P PP T P A PV S DP
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168
Query: 534 PTP--TTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
+ P P S PL S PD P + +P
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASP 220
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 31.0 bits (70), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 497 SSDPRCPTRPPPPPPPPPTTPAPP 520
SS+ P P PPPP++P+ P
Sbjct: 21 SSNRHHHHHTPSPSPPPPSSPSTP 44
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 31.1 bits (70), Expect = 3.4
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR------PPPSPTPTTPAPLVCYPGSSDP 500
PR T+ P P + P R + PPP T P
Sbjct: 7 PRNAILRETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDL---KPDHRSA 63
Query: 501 RCPTRPPPPPPPPPTTP 517
+ P PP PP + P
Sbjct: 64 SAKLKSPLPPRPPSSNP 80
Score = 30.7 bits (69), Expect = 5.0
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS-PDP 421
SP P++ + P+ + PPP + +P P
Sbjct: 19 EEQSPNPSSHKSKPSSRKLKSSKENA--------PPPDLNSLTSDLKPDHRSASAKLKSP 70
Query: 422 RCPRPPPS 429
PRPP S
Sbjct: 71 LPPRPPSS 78
>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription
factor N terminal domain. The N terminus of the PEA3
transcription factors is implicated in transactivation
and in inhibition of DNA binding. Transactivation is
potentiated by activation of the Ras/MAP kinase and
protein kinase A signalling cascades. The N terminal
region contains conserved MAP kinase phosphorylation
sites.
Length = 336
Score = 30.6 bits (69), Expect = 3.5
Identities = 27/117 (23%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
PTP +TP +P + P+ P + PP P P
Sbjct: 132 PPTPPSTPCSP-------------VNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPP 178
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPS 482
P SP + ++P P PPP PP S +P P PP
Sbjct: 179 PMSSPDSSYPSEHRFQRQLSEPCLPFPPPPGRGSRDGRPPYHRQMS-EPLVPYPPQG 234
Score = 30.6 bits (69), Expect = 3.8
Identities = 25/108 (23%), Positives = 33/108 (30%)
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
+P P T P+ C P + P+ P + PP P P P SP
Sbjct: 125 KPASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPD 184
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP 532
+ P+ S+P P PPP P P P
Sbjct: 185 SSYPSEHRFQRQLSEPCLPFPPPPGRGSRDGRPPYHRQMSEPLVPYPP 232
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 30.5 bits (69), Expect = 3.5
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
Q P S T + P P + +P PPPPPPPPP P+
Sbjct: 143 AAQEQSNSTTSDLLSSDESVPSSSTTSFP----ISPPTEEPVLEVPPPPPPPPPPPPPS 197
>gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf). This family
consists of several eukaryotic suppressor of forked
(Suf) like proteins. The Drosophila melanogaster
Suppressor of forked [Su(f)] protein shares homology
with the yeast RNA14 protein and the 77-kDa subunit of
human cleavage stimulation factor, which are proteins
involved in mRNA 3' end formation. This suggests a role
for Su(f) in mRNA 3' end formation in Drosophila. The
su(f) gene produces three transcripts; two of them are
polyadenylated at the end of the transcription unit, and
one is a truncated transcript, polyadenylated in intron
4. It is thought that su(f) plays a role in the
regulation of poly(A) site utilisation and an important
role of the GU-rich sequence for this regulation to
occur.
Length = 271
Score = 30.7 bits (70), Expect = 3.5
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 15/92 (16%)
Query: 312 TTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP---PICYPGSPDPRCPRPPPSPT 368
+ PGS + T P + RP D + P +P
Sbjct: 158 IKKRELGSPGSQERPKATLNPVTQATNSKKRPLEDDDSSKKPDKSRRLDQQRRSPSTNPA 217
Query: 369 PTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P + + +P P PP
Sbjct: 218 PQASG------------PQQQQQGQPAPLPPE 237
Score = 29.6 bits (67), Expect = 6.7
Identities = 17/98 (17%), Positives = 22/98 (22%), Gaps = 1/98 (1%)
Query: 373 PTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 432
P L PGS + T P + RP P + T
Sbjct: 157 PIKKRELG-SPGSQERPKATLNPVTQATNSKKRPLEDDDSSKKPDKSRRLDQQRRSPSTN 215
Query: 433 TTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPG 470
A P PP + P + G
Sbjct: 216 PAPQASGPQQQQQGQPAPLPPEIVALLSVLPNAQYFDG 253
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and repair].
Length = 1135
Score = 31.2 bits (71), Expect = 3.5
Identities = 13/65 (20%), Positives = 16/65 (24%), Gaps = 10/65 (15%)
Query: 456 TPRPTTQPPPVCY-PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPP 514
P + + DP + T T A P P P P P
Sbjct: 896 HPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEAL---------PDWLRAPAPAEPALP 946
Query: 515 TTPAP 519
AP
Sbjct: 947 RPLAP 951
Score = 30.8 bits (70), Expect = 4.4
Identities = 16/82 (19%), Positives = 21/82 (25%), Gaps = 24/82 (29%)
Query: 481 PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
P P + + + P P T A P P
Sbjct: 895 PHPAQGKAEWRLRF--TRRDWDPVGLPVEAAQTDTLEALP-------------DWLRAPA 939
Query: 541 PPQCYLGSPDPRCPRPLPSSPS 562
P + P PRPL +PS
Sbjct: 940 PAE-------PALPRPL--APS 952
Score = 30.4 bits (69), Expect = 5.0
Identities = 14/73 (19%), Positives = 16/73 (21%), Gaps = 14/73 (19%)
Query: 274 GKGLKITTPRPTTQPPPICY---PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTR 330
G+ P P DP + T T P
Sbjct: 887 AAGIAWQEPHPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEALP-----------DWL 935
Query: 331 PPPPPPPPTTPRP 343
P P P PRP
Sbjct: 936 RAPAPAEPALPRP 948
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 31.0 bits (70), Expect = 3.7
Identities = 12/58 (20%), Positives = 15/58 (25%)
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA 437
V PG+ PP P P + P + P P P A
Sbjct: 894 VFGPGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVA 951
Score = 30.6 bits (69), Expect = 4.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
PPP P P PP P + PR P PP+
Sbjct: 910 AASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948
Score = 30.6 bits (69), Expect = 5.1
Identities = 12/66 (18%), Positives = 17/66 (25%)
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
+PT + PG+ PP P P + P + P P
Sbjct: 884 APTLAEALDQVFGPGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGP 943
Query: 367 PTPTTT 372
P
Sbjct: 944 DVPPAA 949
Score = 30.2 bits (68), Expect = 6.0
Identities = 13/44 (29%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
PPP P P P R PP PP P P
Sbjct: 912 SAPPPGAGPPAPPQ---------AVPPPRTTQPPAAPPRGPDVP 946
>gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic
activation/proliferation-associated protein-1 C term.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 343 and 708 amino
acids in length. This family is the C terminal region of
caprin-1. Caprin-1 is a protein involved in regulating
cellular proliferation. In mutated phenotypes, the G1
phase of the cell cycle is greatly lengthened, impairing
normal proliferation. The C terminal region of caprin-1
contains RGG motifs which are characteristic of RNA
binding domains. It is possible that caprin-1 functions
through an RNA binding mechanism.
Length = 319
Score = 30.7 bits (69), Expect = 3.8
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 314 PAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 373
P +C P ++ R P P T P P Y SP P P P T P
Sbjct: 38 PQMVCPPVHSESRLSQPSAVPVQPEPTQVPMVSPTSEGYTSSPPLYQPSHTAEPRPQTDP 97
Query: 374 TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
P +++ + P P + ++P
Sbjct: 98 IDPIQ-ASMSLNSEQTPTSSSLPAASQPQVFQTGSKPL 134
Score = 29.9 bits (67), Expect = 5.8
Identities = 21/95 (22%), Positives = 29/95 (30%)
Query: 378 PLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA 437
+VC P ++ R P P T P P Y SP P P P T P
Sbjct: 39 QMVCPPVHSESRLSQPSAVPVQPEPTQVPMVSPTSEGYTSSPPLYQPSHTAEPRPQTDPI 98
Query: 438 PICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
+ +P ++ +QP P
Sbjct: 99 DPIQASMSLNSEQTPTSSSLPAASQPQVFQTGSKP 133
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 29.7 bits (67), Expect = 3.9
Identities = 17/66 (25%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG--- 384
+ PPPP PPP PPP P P P P
Sbjct: 54 TVQTTPPPPASAITNGGPPPPP-----PARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108
Query: 385 -SNDPR 389
+ DPR
Sbjct: 109 VAKDPR 114
Score = 29.7 bits (67), Expect = 4.2
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 391 PTRPPPPPPPPTTP---RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
+ PPPP P P P P P PP+ PA + DP
Sbjct: 54 TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVAKDP 113
Query: 448 R 448
R
Sbjct: 114 R 114
Score = 28.5 bits (64), Expect = 9.1
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
PG D PP P T P P PPPP P P
Sbjct: 48 PGLEDVTVQTTPPPPASAITNGG---PPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAE 104
Query: 354 GSP----DPR 359
+ DPR
Sbjct: 105 NTVTVAKDPR 114
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 30.6 bits (69), Expect = 3.9
Identities = 27/117 (23%), Positives = 32/117 (27%), Gaps = 1/117 (0%)
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
P T +P Y P P PP + P QP P
Sbjct: 70 NEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPP 129
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
R P P P P+ + P + P P QP V P R PR
Sbjct: 130 EEARQPVLPQEAPAPQPVHSA-APQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPR 185
>gnl|CDD|227676 COG5386, COG5386, Cell surface protein [Cell envelope biogenesis,
outer membrane].
Length = 352
Score = 30.6 bits (69), Expect = 3.9
Identities = 12/46 (26%), Positives = 13/46 (28%), Gaps = 18/46 (39%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTP 376
P P TT P +PTP TTP P
Sbjct: 189 TPNDDKNVAQPGTTT------------------PKTPTPQTTPNKP 216
Score = 29.5 bits (66), Expect = 9.2
Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 21/55 (38%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
P P TT P +PTP TTP P +P+
Sbjct: 189 TPNDDKNVAQPGTTT------------------PKTPTPQTTPNK---PKVENPK 222
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 30.8 bits (69), Expect = 4.4
Identities = 29/130 (22%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
Query: 284 PTTQPPPICYPGSPDPRCP--RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
+ P Y +P+ P PP S TP + P P SN P T P P P
Sbjct: 418 GNSNPG---YNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNT-PYSNAPLSNAP 473
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSN-DPRCPTRPPPPPPP 400
+ + Y + R P + PT G++ +RP P
Sbjct: 474 PSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPY 533
Query: 401 PTTPRPTTQP 410
T P
Sbjct: 534 GGNAATTADP 543
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family. The model
describes Niemann-Pick C type protein in eukaryotes. The
defective protein has been associated with Niemann-Pick
disease which is described in humans as autosomal
recessive lipidosis. It is characterized by the
lysosomal accumulation of unestrified cholesterol. It is
an integral membrane protein, which indicates that this
protein is most likely involved in cholesterol transport
or acts as some component of cholesterol homeostasis
[Transport and binding proteins, Other].
Length = 1204
Score = 30.6 bits (69), Expect = 4.5
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLV----------------CYPGSSDPRCPTRPPPPPPP 512
PG+P P P P + P+ C D C +PP PP P
Sbjct: 170 PGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCSCKAKPPTPPKP 229
Query: 513 PPTT 516
+
Sbjct: 230 SCSI 233
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 30.7 bits (69), Expect = 4.6
Identities = 20/110 (18%), Positives = 30/110 (27%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P P P + P GS P+ T ++ + S+
Sbjct: 282 YPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSLWSPSSLCGM 341
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPIC 440
T P P + PG+ P TP+T+P P
Sbjct: 342 ATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGEPASESTPSTSPPPPG 391
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 30.0 bits (68), Expect = 4.6
Identities = 34/131 (25%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
P P+ + T PA L P P P P P P P P I P
Sbjct: 42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKP 101
Query: 423 CPRPPPSPTPTTTPAPICYPGSNDPRCPSP----PPTTPRPTTQPPPVCYPGSPDPRCPR 478
P+P P P P +PR SP P P +T P + PR
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPR 161
Query: 479 PPPSPTPTTPA 489
P PA
Sbjct: 162 ALSRNQPQYPA 172
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 30.6 bits (69), Expect = 4.7
Identities = 22/170 (12%), Positives = 34/170 (20%), Gaps = 30/170 (17%)
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
PP T ++ P+TP+ R T T P
Sbjct: 458 EPPYGSTESSVPSTPSTR-------------RNDRNITSNTPSLKRT-------PNLTKS 497
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP-------PTTPRPTTQPPP---VCYPGS 471
+ + +T P P R + PGS
Sbjct: 498 SLSQEASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGS 557
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
+ + P L P+ +P P
Sbjct: 558 INSKSPEHSVPLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPP 607
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 30.3 bits (68), Expect = 4.8
Identities = 35/157 (22%), Positives = 43/157 (27%), Gaps = 26/157 (16%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQ--PPPICYPGSPDPRC 360
P P P PAP+ PP P PRPT P G P
Sbjct: 281 ECPVEPEPLPVPAPV---------------PPTPEDDNPRPTDDEFAVPNFNEGLDVPDN 325
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P+ P P P +P +D P PP PP P + P+
Sbjct: 326 PQDPVPPPNEGKDGNPNEENLFPPGDD-EVPDESNVPPNPPNVPGGSNSEFSSDVENPPN 384
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P P P ++ P P P
Sbjct: 385 PPNPDIPEQEPNIPED--------SNKEVPEDVPMEP 413
Score = 30.3 bits (68), Expect = 6.1
Identities = 30/141 (21%), Positives = 43/141 (30%), Gaps = 10/141 (7%)
Query: 406 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP---ICYPGSNDPRCPSPPPTTPRPTTQ 462
+P P+ P P P P P+ P + P ++P+ P PPP +
Sbjct: 284 VEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVP--DNPQDPVPPPNEGKDGNP 341
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
+P D P P GS+ PP PP P P
Sbjct: 342 NEENLFPPGDDEVPDESNVPPNPPNVPG-----GSNSEFSSDVENPPNPPNPDIPEQEPN 396
Query: 523 YPGSNDPRCPRPTPTTPPPPQ 543
P ++ P P P +
Sbjct: 397 IPEDSNKEVPEDVPMEPEDDR 417
Score = 29.5 bits (66), Expect = 9.8
Identities = 17/79 (21%), Positives = 23/79 (29%)
Query: 298 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 357
+P+ P PPP+ P D P PP PP P + P+
Sbjct: 325 NPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPN 384
Query: 358 PRCPRPPPSPTPTTTPTTP 376
P P P +
Sbjct: 385 PPNPDIPEQEPNIPEDSNK 403
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 30.6 bits (69), Expect = 4.9
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 336 PPPTTPRPTTQPPPICYPGS-PDPRCPRPPPSPTPTTTPTTP-APLVCYPGSNDPRCPTR 393
P T Q P+ + P + T P++ P S T
Sbjct: 34 TTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTS 93
Query: 394 PPPPPPPPTTPRPTTQP 410
P T T++P
Sbjct: 94 EARTVTPAAT--ETSKP 108
Score = 30.2 bits (68), Expect = 6.4
Identities = 14/77 (18%), Positives = 19/77 (24%), Gaps = 6/77 (7%)
Query: 451 SPPPTTPRPTTQPPPVCYPGS-PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRP--- 506
+ P T Q PV + P + T +SDP
Sbjct: 33 TTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTT 92
Query: 507 --PPPPPPPPTTPAPPV 521
P T + PV
Sbjct: 93 SEARTVTPAATETSKPV 109
Score = 30.2 bits (68), Expect = 6.5
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 399 PPPTTPRPTTQPPPICYPGS-PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P T Q P+ + P + T P+ ++DP + TT
Sbjct: 34 TTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTS 93
Query: 458 RPTTQPPP 465
T P
Sbjct: 94 EARTVTPA 101
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 30.3 bits (68), Expect = 4.9
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 424 PRPPPSPTPTTTPAPICYP-GSNDPRCPSPPPTTPRPTTQPPPVCYPGS 471
P + P TT P P P PP +P TQPP P +
Sbjct: 54 DTPEEATIPETTVKPTAPPRQKPASGQPQPPAIHKQPATQPPAADIPSA 102
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 30.6 bits (69), Expect = 5.2
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 298 DPRCPRP----PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
+ P P S + P Y G+ P C P P PRP + I
Sbjct: 396 EVIKPLPTETGSDSWVEASFPVGHKYSGTEQPSCSAPKEPEEELPAEPRPIDECLSILKS 455
Query: 354 G 354
Sbjct: 456 D 456
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This
family represents the phosphoprotein of Paramyxoviridae,
a putative RNA polymerase alpha subunit that may
function in template binding.
Length = 266
Score = 29.8 bits (67), Expect = 5.3
Identities = 12/100 (12%), Positives = 20/100 (20%), Gaps = 12/100 (12%)
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR 501
P T + P + P +P C + Y
Sbjct: 27 PSHKRQSISGEKVNTISEKFELPTISKPTTPKGPCIKDEIISVNKVKDIESIYE------ 80
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
P P P + + + + P P
Sbjct: 81 ------KPVTPTSDGKTPTEKSDDTPTKKKKKVSFKEPEP 114
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 30.4 bits (68), Expect = 5.4
Identities = 38/210 (18%), Positives = 48/210 (22%), Gaps = 12/210 (5%)
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 443
G P P PPP P + G + + T G
Sbjct: 303 GQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQG 362
Query: 444 SNDPRCPSPPPTTP-RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
N P Q + Y + P + S P
Sbjct: 363 GNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMM----SSPSPVP 418
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP-------PQCYLGSPDPRCPR 555
+ P PP P PGS P+ PP PQ R +
Sbjct: 419 QVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPASQRTIQ 478
Query: 556 PLPSSPSPPVCYPGSPDPRCPRPPSPTPEY 585
SP P+ PG P P Y
Sbjct: 479 QDMVSPGGPLNTPGQSSVNSPANPQEEQLY 508
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 30.4 bits (68), Expect = 5.4
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 446 DPRCP-SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
+ R P S P T Q C PG P P P P P P
Sbjct: 1298 NLRHPCSGPTEKAGQTPQASHTCSPGQPAAH-PEGQPPPEPEDPGV 1342
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 30.2 bits (68), Expect = 6.2
Identities = 18/72 (25%), Positives = 19/72 (26%), Gaps = 17/72 (23%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
P SPT T SN T TT P
Sbjct: 777 PQSPTKTE-TTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSP--------------- 820
Query: 365 PSPTPTTTPTTP 376
SPT TT+PT
Sbjct: 821 -SPTQTTSPTQT 831
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 29.6 bits (67), Expect = 6.2
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPT 368
RPPP P P P +P S +P +
Sbjct: 91 APRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQP 131
Score = 29.6 bits (67), Expect = 6.2
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPT 431
RPPP P P P +P S +P +
Sbjct: 91 APRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQP 131
Score = 28.9 bits (65), Expect = 9.6
Identities = 10/44 (22%), Positives = 11/44 (25%)
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGS 548
P PPP P P P PG + P
Sbjct: 91 APRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 29.8 bits (67), Expect = 6.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 503 PTRPPPPPPPPPTTPAPPVC 522
P+ PPPPPPPPP +
Sbjct: 230 PSAPPPPPPPPPPSVPTISN 249
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 29.6 bits (66), Expect = 6.5
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 464 PPVCYPGSPDPRCPRPPPSPTPTTP--APLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
G P P PR PP P P P P P PPP P PP P PP
Sbjct: 157 KSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPLGPPMIPPPPP 216
Query: 522 CYPGS 526
P
Sbjct: 217 MSPDF 221
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 29.9 bits (67), Expect = 6.9
Identities = 40/222 (18%), Positives = 53/222 (23%), Gaps = 28/222 (12%)
Query: 319 YPGSNDPRCPT------RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTT 372
Y ND P +P P P R TT PP + P + S +
Sbjct: 403 YDDDNDIPFPGPIEDDVQPRPMDDDPDDSRDTTIPPGVVDPIDGEST----EYSSYSDSF 458
Query: 373 PTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 432
T LV + D P P + T P PPP
Sbjct: 459 VGTNDDLVLFNLDED---DDDSKPIPEQAASTYGQTSR--------ERQGIPEPPPGSHQ 507
Query: 433 TTTPAPICYPGSNDPRCPSPPPTTPRPTTQP-----PPVCYPGSPDPRCPRPPPSPTPTT 487
A +N+ + T P T PV P+ + S P
Sbjct: 508 PGNRAS--QDLNNNNQKQEDESTNPIGKTSLRYQELTPVQEEDEPEDQTDDDDSSLPPLE 565
Query: 488 PAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDP 529
PP P + +P N
Sbjct: 566 SDDDPGSDNEQGVDLTEVAPPAPVYRDEKEQDEIPHPAQNPQ 607
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 29.1 bits (65), Expect = 7.0
Identities = 11/46 (23%), Positives = 13/46 (28%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 350
TPAP P P P P P P + P+
Sbjct: 46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPM 91
Score = 28.3 bits (63), Expect = 9.8
Identities = 12/47 (25%), Positives = 13/47 (27%)
Query: 332 PPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
TP P P P P P P P+ T P P
Sbjct: 46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92
>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional.
Length = 844
Score = 30.2 bits (68), Expect = 7.0
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 247 WDRIILRGENADLKFKNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPP 306
+ + + ++DL ++N+ YY + + R
Sbjct: 343 YRKTSVVFADSDLVWRNLFYVYYEY--------------------SLDDNVGGRPRTARL 382
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT 344
S P + P+ GS+ + PPP T P
Sbjct: 383 SAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPATDPSSD 420
Score = 29.8 bits (67), Expect = 8.6
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 317 ICYPGSNDPRCPTRPPPPPPPPTTP-RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPT 374
+ R T PPP P P + P S PPP+ P++ PT
Sbjct: 367 YSLDDNVGGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSS---SSAPPPATDPSSDPT 422
>gnl|CDD|237158 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 962
Score = 30.0 bits (68), Expect = 7.0
Identities = 11/49 (22%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 619 PRP--QPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPS 665
RP P P P P T +P +P PS
Sbjct: 913 LRPGTDYAALDYDP---RDQPLPATPTVEPEEDGDTDWPEPVNPASDPS 958
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 30.2 bits (68), Expect = 7.2
Identities = 11/42 (26%), Positives = 12/42 (28%)
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGS 548
PP P P P P S P P + L S
Sbjct: 60 PPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDLRGELQS 101
Score = 29.8 bits (67), Expect = 8.1
Identities = 8/39 (20%), Positives = 8/39 (20%), Gaps = 6/39 (15%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 369
P P P P P I P P
Sbjct: 61 PAPAPLPAALVAPAPAAASI------AAPAAVPAPGAIG 93
Score = 29.8 bits (67), Expect = 8.1
Identities = 8/39 (20%), Positives = 8/39 (20%), Gaps = 6/39 (15%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 432
P P P P P I P P
Sbjct: 61 PAPAPLPAALVAPAPAAASI------AAPAAVPAPGAIG 93
>gnl|CDD|236692 PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II;
Provisional.
Length = 445
Score = 29.8 bits (67), Expect = 7.2
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP--------SPTPTTTPAPICYPGSN 445
PPPPPPPP + P + S R P S T PA +
Sbjct: 130 PPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRPAARATANTG 189
Query: 446 DP 447
D
Sbjct: 190 DK 191
>gnl|CDD|215361 PLN02673, PLN02673, quinolinate synthetase A.
Length = 724
Score = 30.0 bits (67), Expect = 7.2
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 450 PSPPPTTPRPT---TQPPPVCYPGSPDPRCPR-PPPSPTPTTPAPLVCYPGSSDP 500
PSP T P + P +C + PPP P+ +P C + P
Sbjct: 20 PSPNFRTTHPNFGSQRRIGTINPLFKSFKCIQSPPPDSAPSNASPFSCSAVAFSP 74
Score = 29.6 bits (66), Expect = 8.6
Identities = 13/60 (21%), Positives = 21/60 (35%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
+ P P P T P +P + + SP P + P+ +P C + P
Sbjct: 15 SLLPNPSPNFRTTHPNFGSQRRIGTINPLFKSFKCIQSPPPDSAPSNASPFSCSAVAFSP 74
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 29.8 bits (67), Expect = 7.4
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 819 DDKKEFAHF--YRTPSPTTPAPPQCYPGSPDPR---CPRPPPSPTTPAPPQCYPGSPDPR 873
+++++ F Y+ S PA P+ P P P+ +P SP A P S R
Sbjct: 189 EEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDR 248
Query: 874 CPRPPLS 880
PL+
Sbjct: 249 IFASPLA 255
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 29.4 bits (66), Expect = 7.5
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP-R 389
P PPPP P P + P + P+ +P TP +P P S+ P +
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLK 201
Query: 390 CPT-----RPPPPPPPP 401
P R P P PP
Sbjct: 202 SPMAGTFYRSPAPGEPP 218
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 28.5 bits (64), Expect = 7.7
Identities = 5/26 (19%), Positives = 6/26 (23%), Gaps = 2/26 (7%)
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPP 520
P + P P PP
Sbjct: 18 PAPAAA--PATAPAAAAAAAPAATPP 41
>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional.
Length = 226
Score = 29.5 bits (66), Expect = 7.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRC 531
R P P P P S P+ PPP P TP P P N R
Sbjct: 163 VGRRTPGPANEPRTRRPLSAPDDEASPQPKSLATPPPVAAPSRRTPR-PRRKPRGNRTRP 221
Query: 532 PRP 534
RP
Sbjct: 222 SRP 224
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 29.7 bits (67), Expect = 8.1
Identities = 12/98 (12%), Positives = 14/98 (14%), Gaps = 18/98 (18%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
PP P P + R P SP +
Sbjct: 81 TAAPPAKSGEEKEETPAASAAA--APTAAANR---PSLSPAARRLAKEHGIDLSAVPGTG 135
Query: 388 PRCPTR-------------PPPPPPPPTTPRPTTQPPP 412
P P P P
Sbjct: 136 VTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRP 173
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 29.9 bits (67), Expect = 8.1
Identities = 13/54 (24%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
P P+ S R P T+ SS PP PP T
Sbjct: 8 PWPLWRFWSSTSLLRRVNPRILRTSS--SASSSPSSTS----LSPPSSDPPLTD 55
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 29.3 bits (65), Expect = 8.2
Identities = 30/130 (23%), Positives = 37/130 (28%), Gaps = 4/130 (3%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC-PRPPPSPTPTTTPTTPAPLVCYPGSN 386
P P P P P + P + P RP + P P P + +
Sbjct: 150 ANNPQPQVQPQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQMRPGFNP 209
Query: 387 DPRCPTRPPPPPPP---PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 443
P P RP P P RP +P P + P P P P
Sbjct: 210 MPGMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPH 269
Query: 444 SNDPRCPSPP 453
PR PP
Sbjct: 270 MAGPRAGFPP 279
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 29.6 bits (66), Expect = 8.5
Identities = 29/120 (24%), Positives = 31/120 (25%), Gaps = 10/120 (8%)
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTT 461
P + P +P P PP P P P R P P
Sbjct: 253 VVPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAG 312
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
G P P PRP P G T PPP P P A PV
Sbjct: 313 --RDGAAGGEPKPGPPRPAP--------DADRPEGWPSLEAITFPPPTPATPAVPRARPV 362
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 29.3 bits (66), Expect = 8.5
Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 25/119 (21%)
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
TT P + + T T AP + RC S
Sbjct: 14 DTTLFPNATSKGV-------------KTVTSSTDTKAPT----NTTYRCVSSTTVPMTNV 56
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
T + + S + C + P P P P P P++PA
Sbjct: 57 TV--------TLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAV 107
>gnl|CDD|216353 pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I like.
Length = 95
Score = 27.8 bits (62), Expect = 8.6
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 816 GLTDDKKEF-AHFYRTPSPTTPAPPQCY---PGSPDPRCPRPPPSPTTPAP 862
+TD+K F PS T C SPD C P T AP
Sbjct: 44 AVTDEKGYFKVELPGDPSSLTHLESACRAKLVSSPDSACSAPTNGNGTGAP 94
>gnl|CDD|203307 pfam05693, Glycogen_syn, Glycogen synthase. This family consists
of the eukaryotic glycogen synthase proteins GYS1, GYS2
and GYS3. Glycogen synthase (GS) is the enzyme
responsible for the synthesis of -1,4-linked glucose
chains in glycogen. It is the rate limiting enzyme in
the synthesis of the polysaccharide, and its activity is
highly regulated through phosphorylation at multiple
sites and also by allosteric effectors, mainly glucose
6-phosphate (G6P).
Length = 633
Score = 29.7 bits (67), Expect = 8.7
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 249 RIILRGENADLK----FKNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRP 304
RII R L +K + +YY L+ P Q + + PRP
Sbjct: 552 RIIQRNRTERLSDLLDWKRLG-RYYRKARQLALRRAYPDQFKQEVEE-TISDNEFKIPRP 609
Query: 305 ---PPSPTPTTTPAPICYPGSNDP 325
PPSP+P+ P+P +
Sbjct: 610 ASVPPSPSPSDAPSPHSSDAEDSE 633
>gnl|CDD|190709 pfam03669, UPF0139, Uncharacterized protein family (UPF0139).
Length = 103
Score = 27.8 bits (62), Expect = 9.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 354
G +DPR P++ PP +P + P Y
Sbjct: 3 GVSDPRRPSKAKRYKPPKLSPNQPLEDLPPDYMN 36
Score = 27.8 bits (62), Expect = 9.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 417
G +DPR P++ PP +P + P Y
Sbjct: 3 GVSDPRRPSKAKRYKPPKLSPNQPLEDLPPDYMN 36
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 29.6 bits (67), Expect = 9.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICY 352
+ P PP P T T+ P C
Sbjct: 41 KKPQPPEPWTGVLDATKYGPACP 63
Score = 29.6 bits (67), Expect = 9.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICY 415
+ P PP P T T+ P C
Sbjct: 41 KKPQPPEPWTGVLDATKYGPACP 63
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 29.3 bits (66), Expect = 9.6
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P P +P P P S T+ + + P+ + PP P PT
Sbjct: 194 RPQEVKQSVPAQQAPPNPQQ--PMPSASSESATSKSAST-SRESSPQPQSPPPRRVPAPT 250
Query: 340 TPRPTTQPPPICY 352
+ I Y
Sbjct: 251 VDSTAKEAEQITY 263
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 29.1 bits (65), Expect = 9.9
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P S P P P+P+P +P P S D R P A
Sbjct: 105 PASAAPVASAPAPAPSPQSPKPA-SRRASRDMRRIAPFGMNASAPAQEAA 153
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 29.3 bits (65), Expect = 9.9
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 435 TPAPICYPGSNDPRCPSPPPTTPRPTTQPP-----PVCYPGSPDPRCPRPPPSPTPTTPA 489
TP P +N+ + + +QP + +P P+ + + TTP
Sbjct: 73 TPKLEKAPNTNEEKTSASKIEK---ISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK 129
Query: 490 PLVCYPGSSDPRCPTRPPPPP-PPPPTT 516
V P S++ P + P PT
Sbjct: 130 TKVTTPPSTNTPQPMQSTKSDTPQSPTI 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.139 0.478
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,213,722
Number of extensions: 5022902
Number of successful extensions: 38152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18015
Number of HSP's successfully gapped: 2811
Length of query: 904
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 798
Effective length of database: 6,236,078
Effective search space: 4976390244
Effective search space used: 4976390244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (28.6 bits)