RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15615
(904 letters)
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 77.4 bits (190), Expect = 1e-14
Identities = 62/316 (19%), Positives = 86/316 (27%), Gaps = 38/316 (12%)
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 416
+ + P T V + +P +
Sbjct: 1447 EESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAG 1506
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRC 476
G + +P P P ++P + P SP
Sbjct: 1507 GFTAYGGADYGEATSPFGAYGE-------APTSPGFGVSSPGFS--------PTSPTYSP 1551
Query: 477 PRPPPSPT-----PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRC 531
P SPT PT+P+ P S PT P P P +P P P S
Sbjct: 1552 TSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTS----- 1602
Query: 532 PRPTPTTPPP----PQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVC 587
P +PT+P P SP P S SP Y + P PS +P
Sbjct: 1603 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPA 1660
Query: 588 YPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSP 647
Y + P P + + P S P P SPT Y + P P+
Sbjct: 1661 YSPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717
Query: 648 SPTPTCYPGSPDPRCR 663
SP + + R
Sbjct: 1718 SPKQDEQKHNENENSR 1733
Score = 72.4 bits (177), Expect = 5e-13
Identities = 68/311 (21%), Positives = 93/311 (29%), Gaps = 35/311 (11%)
Query: 289 PPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
P+ + TP + +P +
Sbjct: 1447 EESLVKYMPEQKITEIEDGQDGGVTPY-----SNESGLVNADLDVKDELMFSPLVDSGSN 1501
Query: 349 PICYPGSPDPRCPRPPPSPTPTT----TPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP 404
G + +P PT+P V PG + P PT P P T
Sbjct: 1502 DAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFS-PTSPTYSPTSPAYSPTS 1560
Query: 405 RPTTQPPPICYPGSPDPRCPRPPPSPT-PTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
+ P P SP P SPT P+ +P Y ++ PS PT+P +
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYSPTSPSYSPTS 1616
Query: 464 PPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRP---PPPPPPPPTTPAPP 520
P P SP P SPT + Y +S PT P P P PT+P+
Sbjct: 1617 PS-YSPTSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPAYSPTSPS-- 1667
Query: 521 VCYPGSNDPRCPRPTPTTPPPPQCYLGSP--DPRCPRPLPSSPSPPVCYPGSPDPRCPRP 578
Y ++ P +P P SP P P P+SP PGSP P+
Sbjct: 1668 --YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYS---PGSPAY-SPKQ 1721
Query: 579 PSPTPEYVCYP 589
Sbjct: 1722 DEQKHNENENS 1732
Score = 62.8 bits (152), Expect = 4e-10
Identities = 67/300 (22%), Positives = 91/300 (30%), Gaps = 46/300 (15%)
Query: 429 SPTPTTTPAPICYPGSNDPRCPSP---PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
+P + D SP + + P P
Sbjct: 1471 TPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAP 1530
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY 545
T+P V PG S PT P P P +P P P S P +PT+P Y
Sbjct: 1531 TSPGFGVSSPGFS----PTSPTYSPTSPAYSPTSPSYSPTS-----PSYSPTSPS----Y 1577
Query: 546 LGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQE 605
+ P SP+ P P SP P SP S P P PT+
Sbjct: 1578 SPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSP---------SYSPTSPSYSPTSPS 1625
Query: 606 TYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPS 665
P P SPT Y + P PS SPT Y + P P+
Sbjct: 1626 -------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPSYSPT 1671
Query: 666 VPP--PTSQPFIPVGLTPFVCTCNV--TTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPS 721
P PTS + P + + N T+P P Y + P+++ + +
Sbjct: 1672 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Score = 62.4 bits (151), Expect = 5e-10
Identities = 62/288 (21%), Positives = 81/288 (28%), Gaps = 40/288 (13%)
Query: 262 KNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPG---SPDPRCPRPPPSPTPTTTPAPIC 318
+ T+ DG + SP T
Sbjct: 1456 EQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGAD 1515
Query: 319 YPGSNDPRCPTRPPPPPPPPTTPRPTTQP-PPICYPGSPDPRCPRPPPSPT-PTTTPTTP 376
Y + P P P P P P P SP P SPT P+ +PT+P
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSP 1575
Query: 377 APLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP------PICYPGSPDPRCPRPPPSP 430
+ P + P P PT+P + P P P SP P SP
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635
Query: 431 T-PTTTPAPICYPGSND-----------------PRCPSPPPTTPRPTTQPPPVCYPGSP 472
T P+ +P Y ++ P PS PT+P + P SP
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS--------PTSP 1687
Query: 473 DPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
P SPT + +P PG S P P P
Sbjct: 1688 SYSPTSPNYSPTSPSYSPTS--PGYS-PGSPAYSPKQDEQKHNENENS 1732
Score = 34.3 bits (78), Expect = 0.21
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 828 YRTPSPTTPAPPQCYPGSPDPRCP-RPPPSPTTPA----PPQCYPGSPDPRCPRPPLSPT 882
Y SP+ Y + P P SPT+PA P P SP P SPT
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1685
Query: 883 ----TPAPPQCYPGSP 894
+P P P SP
Sbjct: 1686 SPSYSPTSPNYSPTSP 1701
Score = 33.9 bits (77), Expect = 0.27
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 832 SPTTPA----PPQCYPGSPDPRCPRPPPSPT----TPAPPQCYPGSPDPRCPRPPLSPTT 883
SPT+PA P P SP P SPT +P P P SP P SP +
Sbjct: 1655 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGS 1714
Query: 884 PAPPQCYPGSPDPWSQNT 901
PA ++N+
Sbjct: 1715 PAYSPKQDEQKHNENENS 1732
Score = 33.5 bits (76), Expect = 0.42
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 830 TPSPTTPAP----PQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCP-RPPLSPTTP 884
+ SPT+P+ P P SP P SPT+P+ Y + P P SPT+P
Sbjct: 1604 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSP 1659
Query: 885 A----PPQCYPGSP 894
A P P SP
Sbjct: 1660 AYSPTSPSYSPTSP 1673
Score = 32.8 bits (74), Expect = 0.77
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 831 PSPTTP----APPQCYPGSPDPRCPRPPPSPT----TPAPPQCYPGSPDPRCPRPPLSPT 882
+PT+P + P P SP P SPT +P P P SP P SPT
Sbjct: 1528 EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1587
Query: 883 ----TPAPPQCYPGSPDP 896
+P P P SP
Sbjct: 1588 SPSYSPTSPSYSPTSPSY 1605
Score = 32.0 bits (72), Expect = 1.1
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 828 YRTPSPT-TPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPT-TPA 885
Y SP+ +P P P SP P SPT+P+ P P SP+ +P
Sbjct: 1598 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1657
Query: 886 PPQCYPGSPD 895
P P SP
Sbjct: 1658 SPAYSPTSPS 1667
Score = 32.0 bits (72), Expect = 1.1
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPT-TPAPPQ 888
T +P P P SP P SPT+P+ P P SP+ +P P
Sbjct: 1594 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1653
Query: 889 CYPGSP 894
P SP
Sbjct: 1654 YSPTSP 1659
Score = 31.2 bits (70), Expect = 1.9
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 828 YRTPSPT-TPAPPQCYPGSPDPRCPRPPPSPTTPAP----PQCYPGSPDPRCPRPPLSPT 882
Y SP+ +P P P SP P SPT+P+ P P SP P SPT
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1629
Query: 883 TPAPPQCYPGSP 894
+P+ P
Sbjct: 1630 SPSYSPTSPSYS 1641
Score = 31.2 bits (70), Expect = 1.9
Identities = 11/63 (17%), Positives = 17/63 (26%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+P + + G + + P SP P SPT+P
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPT 1552
Query: 890 YPG 892
P
Sbjct: 1553 SPA 1555
Score = 31.2 bits (70), Expect = 2.1
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTP----APPQCYPGSPDPRCPRPPLSPT--- 882
T Y + P +PT+P + P P SP P SPT
Sbjct: 1504 MAGGFTAYGGADYGEATSPF-GAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPS 1562
Query: 883 -TPAPPQCYPGSP 894
+P P P SP
Sbjct: 1563 YSPTSPSYSPTSP 1575
Score = 30.8 bits (69), Expect = 2.3
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
SP P SP P SPT+P P SP P SPT+P+
Sbjct: 1520 TSPFGAYGEA--PTSPGFGVSSPGFSPTSPTYS---PTSPAYSPTSPSYSPTSPSYSPTS 1574
Query: 891 PG 892
P
Sbjct: 1575 PS 1576
Score = 30.8 bits (69), Expect = 2.5
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPG-SPDPRCPRPPLSPTTPAPPQ 888
T +P P P SP P SPT+P+ P SP P +P P
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1618
Query: 889 CYPGSP 894
P SP
Sbjct: 1619 YSPTSP 1624
Score = 29.3 bits (65), Expect = 8.1
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAP--- 886
T +P P P SP P SPT+P+ P SP P SPT+P+
Sbjct: 1552 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPT 1608
Query: 887 -PQCYPGSP 894
P P SP
Sbjct: 1609 SPSYSPTSP 1617
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 75.9 bits (186), Expect = 4e-14
Identities = 86/333 (25%), Positives = 102/333 (30%), Gaps = 61/333 (18%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P TP + + GSPD SP Y
Sbjct: 1475 TSQLPEGAGTPYERSPMVDSGFVGSPDA----AAFSPLVQGGSEGREGFGDYGLLG---- 1526
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P +P T+ PG P SP +T+PA + S P P
Sbjct: 1527 ---AASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSP 1583
Query: 451 SPPPTTPR--PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
S PT+P PT+ P P SP P SPT P S PT P
Sbjct: 1584 SYSPTSPSYSPTS---PSYSPTSPSYSATSPSYSPT---------SPSYS----PTSPSY 1627
Query: 509 PPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYP 568
P P +P P P S P +PT+P Y + P SP+ P P
Sbjct: 1628 SPTSPSYSPTSPSYSPTS-----PSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSYSP 1678
Query: 569 GSPDPRCPRPP--SPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQP 626
SP P P SPT P P PT+ P P
Sbjct: 1679 TSPSYS-PTSPSYSPTSPSYS------PTSPSYSPTSPSY-------------SPTSPSY 1718
Query: 627 SPTPLCYPGSPDPRCPRPPSPSPTPTCY-PGSP 658
SPT Y + P PS SPT Y P SP
Sbjct: 1719 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 72.8 bits (178), Expect = 5e-13
Identities = 77/298 (25%), Positives = 92/298 (30%), Gaps = 46/298 (15%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P TP + + GSPD P + G P
Sbjct: 1475 TSQLPEGAGTPYERSPMVDSGFVGSPDAA-AFSPLVQGGSEGREGFGDYGLLGAASPYKG 1533
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
+P T+ PG P SP+ + Y SS PT P P P
Sbjct: 1534 VQSPGYTSPFSSAMSPGYGLTS---PSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
Query: 514 PTTPAPPVCYPGSN--DPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSP----PVCY 567
+P P P S P +PT+P S P P P+SPS P
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSP--------SYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 568 PGSPDPRCPRPPSPT-PEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQP 626
P SP SPT P Y S P P PT+ P P
Sbjct: 1643 PTSP------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-------------PTSPSY 1683
Query: 627 SPTPLCYPGSPDPRCPRPPSPSPTPTCY-PGSPD-----PRCRPSVP--PPTSQPFIP 676
SPT Y + P PS SPT Y P SP P P+ P PTS + P
Sbjct: 1684 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741
Score = 71.3 bits (174), Expect = 1e-12
Identities = 80/336 (23%), Positives = 106/336 (31%), Gaps = 37/336 (11%)
Query: 245 VLWDRIILRGENADLKFKNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRP 304
+ D+ +L + TP + + GSPD
Sbjct: 1449 IYLDQDMLMNYSLGTA-VPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDA----A 1503
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
SP P +P T+ PG P
Sbjct: 1504 AFSPLVQGGSEG---REGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSP 1560
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
SP +T+P Y S+ PT P P P + PT+ P P SP
Sbjct: 1561 SSPGYSTSP-------AYMPSSPSYSPTSPSYSPTSP-SYSPTS---PSYSPTSPSYSAT 1609
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
P SP T+P+ S P PS PT+P + P P S P PS +
Sbjct: 1610 SPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTS--PSYSPTSPSYS 1663
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS--NDPRCPRPTPTTPPPP 542
PT+P+ Y +S PT P P P +P P P S P P +PT+P
Sbjct: 1664 PTSPS----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-- 1717
Query: 543 QCYLGSPDPRCPRPLPSSPSPPVCYPGSP--DPRCP 576
Y + P SP+ P P SP P P
Sbjct: 1718 --YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 35.1 bits (80), Expect = 0.12
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 832 SPT----TPAPPQCYPGSPDPRCPRPPPSPTTPA----PPQCYPGSPDPRCPRPPLSPTT 883
SPT +P P P SP P SPT+P+ P P SP P SPT+
Sbjct: 1586 SPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Query: 884 PAPPQCYPGSP 894
P+ P SP
Sbjct: 1646 PSYS---PTSP 1653
Score = 34.3 bits (78), Expect = 0.26
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 828 YRTPSP-TTPAPPQCYPGSPDPRCPRPPPSPTT----PAPPQCYPGSPDPRCPRPPLSPT 882
Y SP +P P P SP P SPT+ P P P SP P SPT
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1735
Query: 883 TPAPPQCYPGSP 894
+P+ P SP
Sbjct: 1736 SPSY---SPTSP 1744
Score = 33.9 bits (77), Expect = 0.30
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPT----TPAPPQCYPGSPDPRCPRPPLSPTTP 884
T +P P P SP P SPT +P P P SP P SPT+P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Query: 885 A----PPQCYPGSP 894
+ P P SP
Sbjct: 1717 SYSPTSPSYSPTSP 1730
Score = 32.7 bits (74), Expect = 0.65
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 826 HFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPA----PPQCYPGSPDPRCPRPPLSP 881
+ T +P P P SP P SPT+P+ P P SP P SP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Query: 882 TTPAP----PQCYPGSP 894
T+P+ P P SP
Sbjct: 1679 TSPSYSPTSPSYSPTSP 1695
Score = 32.4 bits (73), Expect = 0.91
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPT----TP 884
++P T+P PG P SP P P SP P SPT +P
Sbjct: 1535 QSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSP 1594
Query: 885 APPQCYPGSP 894
P P SP
Sbjct: 1595 TSPSYSPTSP 1604
Score = 32.0 bits (72), Expect = 1.0
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 832 SPTTPAPPQCYPG-SPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPA----P 886
SPT+P+ P SP P +P P P SP P SPT+P+
Sbjct: 1642 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1701
Query: 887 PQCYPGSPD 895
P P SP
Sbjct: 1702 PSYSPTSPS 1710
Score = 31.6 bits (71), Expect = 1.5
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 832 SPTTPA----PPQCYPGSPDPRCPRPPPSPTTPAP----PQCYPGSPDPRCPRPPLSPTT 883
SPT+P+ P P SP P SPT+P+ P P SP P SPT+
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1673
Query: 884 PAP----PQCYPGSPD 895
P+ P P SP
Sbjct: 1674 PSYSPTSPSYSPTSPS 1689
Score = 31.6 bits (71), Expect = 1.7
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 828 YRTPSPT-TPAPPQCYPGSPDPRCPRPPPSPTTPAP----PQCYPGSPDPRCPRPPLSPT 882
Y SP+ +P P P SP P SPT+P+ P P SP P SPT
Sbjct: 1648 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707
Query: 883 T----PAPPQCYPGSP 894
+ P P P SP
Sbjct: 1708 SPSYSPTSPSYSPTSP 1723
Score = 31.2 bits (70), Expect = 1.9
Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 19/82 (23%)
Query: 830 TPSPTTPAPPQCYPGSPD-------------PRCPRPPPSPTTPAPPQCYPGSPDPRCPR 876
TP +P + GSPD R A P Y G P
Sbjct: 1484 TPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASP--YKGVQSPGYTS 1541
Query: 877 PPLSPTTP----APPQCYPGSP 894
P S +P P P SP
Sbjct: 1542 PFSSAMSPGYGLTSPSYSPSSP 1563
Score = 31.2 bits (70), Expect = 2.1
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 828 YRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPA-- 885
Y T P+ P P SP P SPT+P+ P SP P SPT+P+
Sbjct: 1565 YSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSATSPSYSPTSPSYS 1621
Query: 886 --PPQCYPGSP 894
P P SP
Sbjct: 1622 PTSPSYSPTSP 1632
Score = 30.4 bits (68), Expect = 3.4
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 832 SPTTPAP----PQCYPGSPDPRCPRPPPSPTTPA----PPQCYPGSPDPRCPRPPLSPTT 883
SPT+P+ P SP P SPT+P+ P P SP P SPT+
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Query: 884 PA----PPQCYPGSPD--PWSQN 900
P+ P P SP P S +
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPS 1675
Score = 30.4 bits (68), Expect = 3.7
Identities = 14/64 (21%), Positives = 16/64 (25%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
G+ P P T+P PG P SP P
Sbjct: 1513 SEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM 1572
Query: 891 PGSP 894
P SP
Sbjct: 1573 PSSP 1576
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 61.7 bits (149), Expect = 5e-10
Identities = 22/115 (19%), Positives = 31/115 (26%), Gaps = 6/115 (5%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
+ P P + + + P P P+P P P P G
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG--- 67
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
+ PT P T+ P + Y P P P P P +P
Sbjct: 68 ---DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119
Score = 58.2 bits (140), Expect = 6e-09
Identities = 26/126 (20%), Positives = 32/126 (25%), Gaps = 5/126 (3%)
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT-RPPPPPPPPPTTPAP 519
P S T + + P P PPPPP P P
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAAS----DFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 520 PVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPP 579
P G + + PT P R P P + +PP P P
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 580 SPTPEY 585
P P
Sbjct: 122 EPDPVR 127
Score = 56.3 bits (135), Expect = 3e-08
Identities = 20/130 (15%), Positives = 28/130 (21%), Gaps = 19/130 (14%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
+ P P + + + P P P+P P PA
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAA-----------G 59
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
+PP T + + P P P PG P
Sbjct: 60 NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQ--------PGPEAPASAPPAAGRA 111
Query: 511 PPPPTTPAPP 520
P P
Sbjct: 112 VPGLYHHPVP 121
Score = 55.5 bits (133), Expect = 4e-08
Identities = 23/144 (15%), Positives = 31/144 (21%), Gaps = 19/144 (13%)
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
+ P P + + A + PP T P P
Sbjct: 5 HHHHHHSSGLVPR-----GSHMVIPSASVTSAASDFLAAL-----------HPPVTVPDP 48
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
PPP G+P P PG++ R P P AP
Sbjct: 49 APPPPPAPAAGNPPDTVT-GDSVLQRILRGPT--GPGTTSLAPAVRYGRQPGPEAPASAP 105
Query: 520 PVCYPGSNDPRCPRPTPTTPPPPQ 543
P P +
Sbjct: 106 PAAGRAVPGLYHHPVPEPDPVRVE 129
Score = 54.4 bits (130), Expect = 1e-07
Identities = 24/114 (21%), Positives = 27/114 (23%), Gaps = 2/114 (1%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
S + S PP T P P PPP G+P
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 416
PT P P R P P PP R P +P
Sbjct: 68 DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV--PGLYHHP 119
Score = 52.8 bits (126), Expect = 3e-07
Identities = 21/137 (15%), Positives = 28/137 (20%), Gaps = 12/137 (8%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P S + + + + + P T P P PPPP P P
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPP-VTVPDPAPPPPPAPAAGNPPDT 64
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
+ P T + PA P PP P
Sbjct: 65 VTGDSVLQRILRGPTGPGTTSLAPAV-----------RYGRQPGPEAPASAPPAAGRAVP 113
Query: 473 DPRCPRPPPSPTPTTPA 489
P
Sbjct: 114 GLYHHPVPEPDPVRVEE 130
Score = 49.0 bits (116), Expect = 4e-06
Identities = 22/150 (14%), Positives = 30/150 (20%), Gaps = 25/150 (16%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P P+ + +L + P P P+ P
Sbjct: 5 HHHHHHSSGLVPRGSHM------------VIPSASVTSAASDFLAALHPPVTVPDPAPPP 52
Query: 563 PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQ 622
PP G+P PT T P R P P+
Sbjct: 53 PPAPAAGNPPDTVTGDSVLQRI-------------LRGPTGPGTTSLAPAVRYGRQPGPE 99
Query: 623 PPQPSPTPLCYPGSPDPRCPRPPSPSPTPT 652
P +P P P
Sbjct: 100 APASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
Score = 48.6 bits (115), Expect = 6e-06
Identities = 22/132 (16%), Positives = 25/132 (18%), Gaps = 11/132 (8%)
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTT 538
+ P GS PPV P P P P
Sbjct: 5 HHHHHHSSGLVP----RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Query: 539 PPPPQCYLGSPDPRCPRPL---PSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPR 595
PP P +S +P V Y P P P P
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG----RAVPGLY 116
Query: 596 CPRPPPTTQETY 607
P
Sbjct: 117 HHPVPEPDPVRV 128
Score = 48.2 bits (114), Expect = 9e-06
Identities = 19/121 (15%), Positives = 27/121 (22%), Gaps = 12/121 (9%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
+ P + + + P P P+P P PA PP
Sbjct: 21 MVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPA------------AGNPPDTVTGD 68
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP 398
+ + + P S P PA PG P P
Sbjct: 69 SVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRV 128
Query: 399 P 399
Sbjct: 129 E 129
Score = 47.8 bits (113), Expect = 1e-05
Identities = 24/139 (17%), Positives = 28/139 (20%), Gaps = 16/139 (11%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
+ P + PPV P P PPP+P
Sbjct: 5 HHHHHHSSGLVPR--GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPP----PPPAPAA 58
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY 545
P V PT P P R P P PP
Sbjct: 59 GNPPDTVTGDSV---------LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109
Query: 546 LGSPDPRCPRPLPSSPSPP 564
P P+P
Sbjct: 110 RAVPGLYHH-PVPEPDPVR 127
Score = 45.1 bits (106), Expect = 8e-05
Identities = 17/117 (14%), Positives = 23/117 (19%), Gaps = 1/117 (0%)
Query: 558 PSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPR 617
S T + ++ P P P G+
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64
Query: 618 CPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPF 674
Q PG+ P P P S P +VP P
Sbjct: 65 VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPE-APASAPPAAGRAVPGLYHHPV 120
Score = 39.7 bits (92), Expect = 0.003
Identities = 29/172 (16%), Positives = 38/172 (22%), Gaps = 16/172 (9%)
Query: 611 PGSIDPRCPRPQPPQPS--PTPLCYPGS--PDPRCPRPPSPSPTPTCYPGSPDPRCRPSV 666
+ PR P S + + P P P P P PD SV
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 667 PPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPG 726
P G T+ P PG P
Sbjct: 71 LQR--ILRGPTGPGT-------TSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 727 SIDPRCPKPLRPSSTFQPETYLPPLPDSASEYSIKRDVGL---NCHPGSNDP 775
DP + + E + P+ VG CHP +
Sbjct: 122 EPDPVRVEEVSRRIKRWAEDEVQLYPEEWEGQFDGFSVGRYMVGCHPDAPTV 173
Score = 33.6 bits (76), Expect = 0.32
Identities = 15/65 (23%), Positives = 17/65 (26%), Gaps = 6/65 (9%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRP------PPSPTTPAPPQCYPGSPDPRCPRPPLSPTT 883
P P P PP G+P PT P P R P P +
Sbjct: 45 VPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASA 104
Query: 884 PAPPQ 888
P
Sbjct: 105 PPAAG 109
Score = 32.8 bits (74), Expect = 0.50
Identities = 9/66 (13%), Positives = 11/66 (16%), Gaps = 4/66 (6%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+ P P + A PDP PP P
Sbjct: 8 HHHSSGLVPRG--SHMVIPSASVTSAASDFLAALHPPVTVPDP--APPPPPAPAAGNPPD 63
Query: 890 YPGSPD 895
Sbjct: 64 TVTGDS 69
Score = 31.3 bits (70), Expect = 1.4
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 1/69 (1%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRP-PPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P T P P P +P P + P P P + P+
Sbjct: 41 PPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEA 100
Query: 890 YPGSPDPWS 898
+P
Sbjct: 101 PASAPPAAG 109
Score = 31.3 bits (70), Expect = 1.5
Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 1/58 (1%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPP-PSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
+ + P P P P PP G+P + P
Sbjct: 21 MVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGP 78
Score = 31.3 bits (70), Expect = 1.7
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 7/75 (9%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRP---PPSPTTPAPPQCYPGSPDPRCPRP----PLSP 881
PS + + + + P P PP P PA + P P
Sbjct: 22 VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP 81
Query: 882 TTPAPPQCYPGSPDP 896
T + P
Sbjct: 82 GTTSLAPAVRYGRQP 96
Score = 30.1 bits (67), Expect = 4.0
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 839 PQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPL-SPTTPAPPQCYPGSPDP 896
+ S + + P + P P PP G+P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 61.9 bits (149), Expect = 8e-10
Identities = 16/220 (7%), Positives = 33/220 (15%), Gaps = 12/220 (5%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P T + + + A +
Sbjct: 25 AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS--------ETAS 76
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
P +P + P T P ++ +
Sbjct: 77 PASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPA 136
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLV----CYPGSSDPRCPTRP 506
+ T + P + P+ + P S R
Sbjct: 137 AEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYL 546
+ A +N +
Sbjct: 197 GHLVNEKASKEAKVQALSNTNSKAKDHASVGGEEFKAYAF 236
Score = 60.4 bits (145), Expect = 2e-09
Identities = 13/210 (6%), Positives = 26/210 (12%), Gaps = 7/210 (3%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
T P +
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARE-------NKLEKAEGVATASETA 75
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
+P + + T P P + P
Sbjct: 76 SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
+ + P + P+ + +D R
Sbjct: 136 AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRR 195
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPTTPA 489
T + S +
Sbjct: 196 TGHLVNEKASKEAKVQALSNTNSKAKDHAS 225
Score = 53.0 bits (126), Expect = 4e-07
Identities = 17/226 (7%), Positives = 34/226 (15%), Gaps = 5/226 (2%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
T P + + + +
Sbjct: 14 LENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKL----EKAEGVA 69
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
+ +P + A + P P S +P +
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ 129
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC 544
P + P P +
Sbjct: 130 GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSV 189
Query: 545 YLGSPDPRCPRPLPSSPSPPVCYPGSPDPRC-PRPPSPTPEYVCYP 589
L S +S V + + + E+ Y
Sbjct: 190 VLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGGEEFKAYA 235
Score = 50.3 bits (119), Expect = 3e-06
Identities = 19/242 (7%), Positives = 40/242 (16%), Gaps = 27/242 (11%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P + T S T + S
Sbjct: 23 ETAVPENSGANTEL---------VSGESEHSTNEADKQNEGEHARENKLEKAEGVATASE 73
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
T + + +++ +P P S+ +P T
Sbjct: 74 TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE- 132
Query: 544 CYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTT 603
P++ + PD + P+ + + + P
Sbjct: 133 ------------SKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP---G 177
Query: 604 QETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCR 663
R + + S + G
Sbjct: 178 AREDDAINRGSVVLASRRTGHLVNEKA--SKEAKVQALSNTNSKAKDHASVGGEEFKAYA 235
Query: 664 PS 665
Sbjct: 236 FD 237
Score = 47.6 bits (112), Expect = 2e-05
Identities = 13/211 (6%), Positives = 28/211 (13%), Gaps = 3/211 (1%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P + + S + + T P
Sbjct: 21 GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGS 570
T A + P + S +P ++ P +
Sbjct: 81 EAATTETAEAA--SAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDES-KPAA 137
Query: 571 PDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTP 630
+ + P + D T
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197
Query: 631 LCYPGSPDPRCPRPPSPSPTPTCYPGSPDPR 661
+ +
Sbjct: 198 HLVNEKASKEAKVQALSNTNSKAKDHASVGG 228
Score = 42.6 bits (99), Expect = 7e-04
Identities = 23/218 (10%), Positives = 42/218 (19%), Gaps = 13/218 (5%)
Query: 497 SSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRP 556
++ P N+ R
Sbjct: 24 TAVPENSGANTELVSGESEHSTNEA--DKQNEGEHARENKLEKAEGVATASETASPASNE 81
Query: 557 LPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDP 616
++ + P+ + + TP P S +P T Q
Sbjct: 82 AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD----ESKPAA 137
Query: 617 RCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSP--DPRCRPSVPPPTSQPF 674
+ + P + P+ + S PG+ D R SV + +
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197
Query: 675 IPVGLTPFVCTCNVTTPRPIPPPLCYPGSTDPRCPREE 712
V + EE
Sbjct: 198 HLVNEKA-----SKEAKVQALSNTNSKAKDHASVGGEE 230
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 61.4 bits (148), Expect = 1e-09
Identities = 36/236 (15%), Positives = 49/236 (20%), Gaps = 18/236 (7%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
P P+ P P P P + P +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
TT L P + P P P P Q +
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVD----PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
+ P PI PP T PPP+ P +
Sbjct: 126 AAMGQNMRPMNQLYPIDLLTEL-------PPPITDLTLPPPPLVIPPERMLVPSELSNAS 178
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPP------PPPPPTTPAPPVCYPGSNDPRCPR 533
+ L P +S ++ P PP+ G RC R
Sbjct: 179 PDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDG-LIVRCRR 233
Score = 58.3 bits (140), Expect = 1e-08
Identities = 36/253 (14%), Positives = 42/253 (16%), Gaps = 35/253 (13%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P P QP P P P P
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAA---GMSYGQMGMPPQGAVP------------ 54
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
T + S + P P P
Sbjct: 55 ---SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP-----------Q 100
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P Q P+ P P P+ P PPPP
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 160
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCP------RPLPSSPSPP 564
P + P R T P L + L PP
Sbjct: 161 LVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPP 220
Query: 565 VCYPGSPDPRCPR 577
RC R
Sbjct: 221 PLNEDGLIVRCRR 233
Score = 56.8 bits (136), Expect = 3e-08
Identities = 40/250 (16%), Positives = 60/250 (24%), Gaps = 26/250 (10%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P P QP P P S P P + +P
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDP----AAAGMSYGQMGMPPQGAVPSMGQQQFLTPA 65
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
+ PLV P+ P + P
Sbjct: 66 QEQLHQQIDQAT-------------TSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQ 112
Query: 514 PTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDP 573
A P Y + P P L P P + P PP+ P
Sbjct: 113 QQPMAAPA-YGQPSAAMGQNMRPMNQLYPIDLLTELPP--PITDLTLPPPPLVIPPERML 169
Query: 574 RCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCY 633
+ +P+Y+ + P+ +++ + + I P + P PL
Sbjct: 170 VPSELSNASPDYIRSTLN---AVPKNSSLLKKSKLPFGLVIRPY--QHLYDDIDPPPLNE 224
Query: 634 PGSPDPRCPR 643
G RC R
Sbjct: 225 DGLI-VRCRR 233
Score = 54.1 bits (129), Expect = 2e-07
Identities = 26/217 (11%), Positives = 35/217 (16%), Gaps = 16/217 (7%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
S P Q PP P+
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGS 570
P + P Y+ P P+ P
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Query: 571 PDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTP 630
P + P YP + P P P PP P
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLT---------------LPPPPLVIPPE 166
Query: 631 LCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVP 667
S T P + + +P
Sbjct: 167 RMLVPSELSNASPDYI-RSTLNAVPKNSSLLKKSKLP 202
Score = 51.0 bits (121), Expect = 2e-06
Identities = 27/213 (12%), Positives = 37/213 (17%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
P QP P P P P + TT
Sbjct: 19 NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
+ P+ P G P
Sbjct: 79 SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
T PPPI P P PP + + P ++
Sbjct: 139 YPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKK 198
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVC 493
++ P P P + C
Sbjct: 199 SKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRC 231
Score = 46.0 bits (108), Expect = 6e-05
Identities = 27/200 (13%), Positives = 34/200 (17%), Gaps = 2/200 (1%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ P P + + P P
Sbjct: 35 PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
P + P + P P+ + D PPP
Sbjct: 95 AYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLL-TELPPPITD 153
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPA-PICYPGSNDPRCPSPPPTTPR 458
P P PP S T P S P P
Sbjct: 154 LTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHL 213
Query: 459 PTTQPPPVCYPGSPDPRCPR 478
PP RC R
Sbjct: 214 YDDIDPPPLNEDGLIVRCRR 233
Score = 35.6 bits (81), Expect = 0.090
Identities = 26/186 (13%), Positives = 37/186 (19%), Gaps = 10/186 (5%)
Query: 561 PSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPR 620
P + Y + P P+ G + PP P +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAV------PSMGQQQFLT 63
Query: 621 PQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLT 680
P Q + P P Y P + P Q P+
Sbjct: 64 PAQEQLHQQID-QATTSMNDMHLHNVPLVDPNAYMQPQVP---VQMGTPLQQQQQPMAAP 119
Query: 681 PFVCTCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSS 740
+ P YP P T P P + S
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASP 179
Query: 741 TFQPET 746
+ T
Sbjct: 180 DYIRST 185
Score = 33.3 bits (75), Expect = 0.51
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P Q + P P + P+ P+ TP Q
Sbjct: 56 MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ--PQVPVQMGTPLQQQQ 113
Query: 890 YPGSPDPWSQNTC 902
P + + Q +
Sbjct: 114 QPMAAPAYGQPSA 126
Score = 32.5 bits (73), Expect = 0.70
Identities = 9/71 (12%), Positives = 11/71 (15%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+ P P + P Q D PL
Sbjct: 41 SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100
Query: 890 YPGSPDPWSQN 900
P Q
Sbjct: 101 VPVQMGTPLQQ 111
Score = 31.3 bits (70), Expect = 1.6
Identities = 7/66 (10%), Positives = 9/66 (13%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
P G P P Q + P
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Query: 891 PGSPDP 896
P +
Sbjct: 93 PNAYMQ 98
Score = 31.3 bits (70), Expect = 1.7
Identities = 7/72 (9%), Positives = 10/72 (13%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+ + P P + L P
Sbjct: 36 AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95
Query: 890 YPGSPDPWSQNT 901
Y P T
Sbjct: 96 YMQPQVPVQMGT 107
Score = 30.9 bits (69), Expect = 2.3
Identities = 6/66 (9%), Positives = 8/66 (12%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCY 890
P P + P P P +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 891 PGSPDP 896
D
Sbjct: 70 HQQIDQ 75
Score = 30.6 bits (68), Expect = 2.8
Identities = 11/73 (15%), Positives = 13/73 (17%), Gaps = 1/73 (1%)
Query: 825 AHFYRTPSPTTPAPP-QCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTT 883
+H + P Q P PP P G P
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 884 PAPPQCYPGSPDP 896
P Q
Sbjct: 62 LTPAQEQLHQQID 74
Score = 29.8 bits (66), Expect = 4.9
Identities = 8/72 (11%), Positives = 15/72 (20%), Gaps = 2/72 (2%)
Query: 831 PSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPP--QCYPGSPDPRCPRPPLSPTTPAPPQ 888
P P + + P P Q +P + T +
Sbjct: 23 LQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Query: 889 CYPGSPDPWSQN 900
+ + N
Sbjct: 83 MHLHNVPLVDPN 94
Score = 29.4 bits (65), Expect = 6.4
Identities = 8/64 (12%), Positives = 14/64 (21%), Gaps = 1/64 (1%)
Query: 838 PPQCYPGSPDPR-CPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDP 896
+ YP + P P P + + + P P P
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64
Query: 897 WSQN 900
+
Sbjct: 65 AQEQ 68
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 54.1 bits (129), Expect = 1e-07
Identities = 30/183 (16%), Positives = 39/183 (21%), Gaps = 7/183 (3%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P P + + T+
Sbjct: 210 MSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGS 269
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
PR P G+ +P P P +P P GS P P
Sbjct: 270 PRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEP----GSAGTWNPGRP 325
Query: 481 PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
+ T P PGS+ P RP P T + S P P
Sbjct: 326 EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSG---SSSFRPDSSGHGNIRPS 382
Query: 541 PPQ 543
P
Sbjct: 383 SPD 385
Score = 53.3 bits (127), Expect = 2e-07
Identities = 30/197 (15%), Positives = 42/197 (21%), Gaps = 10/197 (5%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
P P P + +
Sbjct: 194 INLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGH 253
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
G +P S P + P G+ +P P P
Sbjct: 254 ARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGP--GSSGTWNPGRPEPGSAGTWNPGR 311
Query: 404 PRPTTQPPPICYPGSPDPRCP------RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P P + PG P+P RP P T P + S ++
Sbjct: 312 PEPGSAGTW--NPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSF 369
Query: 458 RPTTQPPPVCYPGSPDP 474
RP + P SPD
Sbjct: 370 RPDSSGHGNIRPSSPDW 386
Score = 52.6 bits (125), Expect = 3e-07
Identities = 23/191 (12%), Positives = 36/191 (18%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P P +T V + + + +
Sbjct: 190 QVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFG 249
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
D +P P N T P P +P
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Query: 473 DPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP 532
P + P P P + P P P + GS+
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSF 369
Query: 533 RPTPTTPPPPQ 543
RP + +
Sbjct: 370 RPDSSGHGNIR 380
Score = 49.5 bits (117), Expect = 3e-06
Identities = 24/161 (14%), Positives = 30/161 (18%), Gaps = 2/161 (1%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ + + G
Sbjct: 223 SQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVN 282
Query: 340 TPRPTTQPPPICYPGSPDPRCPRP-PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP 398
PG P+P P + T P PGS P RP P
Sbjct: 283 PGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 342
Query: 399 PPPTTP-RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P RP GS RP S P+
Sbjct: 343 AGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSS 383
Score = 48.3 bits (114), Expect = 8e-06
Identities = 32/193 (16%), Positives = 41/193 (21%), Gaps = 4/193 (2%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
+ P+ + P PR + P A +
Sbjct: 188 LEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKAL---LEMQQTKMV 244
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
G PR P + + P PGSS P RP P
Sbjct: 245 LETFGGDGHARGDSVSQGTGLAPGS-PRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGS 303
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGS 570
P G+ +P P P P P S GS
Sbjct: 304 AGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGS 363
Query: 571 PDPRCPRPPSPTP 583
RP S
Sbjct: 364 SGSSSFRPDSSGH 376
Score = 44.5 bits (104), Expect = 1e-04
Identities = 31/167 (18%), Positives = 39/167 (23%), Gaps = 6/167 (3%)
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVC 566
P T P P + + L + S
Sbjct: 206 PILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGL 265
Query: 567 YPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQP 626
PGSP PGS P P G+ +P P P
Sbjct: 266 APGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGS------AGTWNPGRPEPGSAGT 319
Query: 627 SPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQP 673
PGS P P P T PG P+P + +S
Sbjct: 320 WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGS 366
Score = 41.4 bits (96), Expect = 0.001
Identities = 30/200 (15%), Positives = 41/200 (20%), Gaps = 4/200 (2%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P+ + P P + APL +
Sbjct: 190 QVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFG 249
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGS 570
G +P ++ P P P P G+
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWN-PGRPEPG--SAGT 306
Query: 571 PDPRCPRPPSPTPEYVCYPGSIDPRCPRP-PPTTQETYVCYPGSIDPRCPRPQPPQPSPT 629
+P P P S P P P PG +P S +
Sbjct: 307 WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGS 366
Query: 630 PLCYPGSPDPRCPRPPSPSP 649
P S RP SP
Sbjct: 367 SSFRPDSSGHGNIRPSSPDW 386
Score = 37.9 bits (87), Expect = 0.012
Identities = 24/159 (15%), Positives = 40/159 (25%)
Query: 523 YPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPT 582
+ + R P + P PR + +
Sbjct: 190 QVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFG 249
Query: 583 PEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCP 642
+ S+ P + ++ G+++P P PGS P
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Query: 643 RPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTP 681
P P T PG P+P + P +P P
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNP 348
Score = 37.9 bits (87), Expect = 0.015
Identities = 23/184 (12%), Positives = 34/184 (18%), Gaps = 7/184 (3%)
Query: 526 SNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEY 585
+ + + + P + +
Sbjct: 180 DYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQ 239
Query: 586 VCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPP 645
+ PR P PGS P P
Sbjct: 240 QTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRP 299
Query: 646 SPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTD 705
P T PG P+P + P +P P P P PG +
Sbjct: 300 EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNP-------GRPEPGSAGTWNPGRPE 352
Query: 706 PRCP 709
P
Sbjct: 353 PGSA 356
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 53.4 bits (126), Expect = 3e-07
Identities = 22/101 (21%), Positives = 24/101 (23%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
P T T A P S+ P P + P P P
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP 404
P PT T PT P P P PP
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494
Score = 52.2 bits (123), Expect = 5e-07
Identities = 25/112 (22%), Positives = 29/112 (25%), Gaps = 5/112 (4%)
Query: 269 YFWDDGKGLKITTPRPT-TQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 327
W +K++ P T P P P I Y + R
Sbjct: 381 NSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRA 440
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICY----PGSPDPRCPRPPPSPTPTTTPTT 375
P PT P T P Y P P P P PTP T
Sbjct: 441 VNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492
Score = 46.8 bits (109), Expect = 2e-05
Identities = 22/111 (19%), Positives = 26/111 (23%), Gaps = 9/111 (8%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
+ P T P P+ + A N
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAV-------NV 443
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
P+ P PP PT P T P P P P PTP T
Sbjct: 444 PKVTKEKPTPPVKPTAPTKPTYETEK--PLKPAPVAPNYEKEPTPPTRLEH 492
Score = 45.3 bits (105), Expect = 8e-05
Identities = 17/100 (17%), Positives = 21/100 (21%)
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
P T + P S+ P P + P P
Sbjct: 393 GPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPT 452
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
PP PT T P P P T+
Sbjct: 453 PPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492
Score = 43.7 bits (101), Expect = 2e-04
Identities = 21/101 (20%), Positives = 25/101 (24%), Gaps = 5/101 (4%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP----PPVCYPGSPDPRCPRPPP 481
P T T A P S+ P P T + + P +P P
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPP-PPPPTTPAPPV 521
PT P P P P PPT
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494
Score = 39.9 bits (91), Expect = 0.004
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 818 TDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRP 877
TD KK + P+ P P P P +PT P P P P P
Sbjct: 423 TDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP--PVKPTAPTKPTYETEKPLKPAPVAPNY 480
Query: 878 PLSPTTPAPPQCYP 891
PT P + +
Sbjct: 481 EKEPTPPTRLEHHH 494
Score = 38.3 bits (87), Expect = 0.010
Identities = 22/100 (22%), Positives = 24/100 (24%), Gaps = 13/100 (13%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
P P P I Y + R + P T T P
Sbjct: 407 NVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVK---------- 456
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
P P PT T PL P P P PP
Sbjct: 457 -PTAPTKPTYETEKPLK--PAPVAPNYEKEPTPPTRLEHH 493
Score = 35.6 bits (80), Expect = 0.075
Identities = 17/99 (17%), Positives = 19/99 (19%), Gaps = 5/99 (5%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
S P P S P P + P
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450
Query: 510 P-----PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P PT P P P P PP +
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTR 489
Score = 32.6 bits (72), Expect = 0.64
Identities = 12/83 (14%), Positives = 18/83 (21%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P P P + Y + R T P + P P P
Sbjct: 412 SDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPL 471
Query: 563 PPVCYPGSPDPRCPRPPSPTPEY 585
P + + P +
Sbjct: 472 KPAPVAPNYEKEPTPPTRLEHHH 494
Score = 32.2 bits (71), Expect = 0.77
Identities = 20/103 (19%), Positives = 25/103 (24%), Gaps = 9/103 (8%)
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPP--PPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
+ P V +S P P T P + N P
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE 449
Query: 542 PQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPS-PTP 583
P P P+ P+ P P P P PTP
Sbjct: 450 K------PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486
Score = 31.4 bits (69), Expect = 1.4
Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 5/85 (5%)
Query: 817 LTDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPD----- 871
++ + + P D + P + P
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450
Query: 872 PRCPRPPLSPTTPAPPQCYPGSPDP 896
P P P +PT P P P P
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAP 475
Score = 31.4 bits (69), Expect = 1.5
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Query: 611 PGSIDPRCPRPQPPQPSPTPLCYPGSPDPRC---PRPPSPSPTPTCYPGSPDPRCRPSVP 667
P S P P + Y + R P+ PTP P +P +
Sbjct: 410 PVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEK 469
Query: 668 PPTSQPFIPV 677
P P P
Sbjct: 470 PLKPAPVAPN 479
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 50.5 bits (119), Expect = 2e-06
Identities = 23/161 (14%), Positives = 35/161 (21%), Gaps = 2/161 (1%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS 385
P R PP TP P + R PP+ PA
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 386 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSN 445
++ P+ P P P P + P + A
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKST--PAAGQPPHLTSAQDQDTISELASCLQRARE 132
Query: 446 DPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
+ + + G P+ C P+
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRF 173
Score = 47.4 bits (111), Expect = 2e-05
Identities = 22/154 (14%), Positives = 29/154 (18%)
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
P R PP TP P + R PP+ P
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
P+TP P P P T+ + R
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134
Query: 509 PPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
A + + P P
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 46.7 bits (109), Expect = 3e-05
Identities = 26/184 (14%), Positives = 34/184 (18%), Gaps = 8/184 (4%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
RP PP P T P +P P P P
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARP--PARRRL 70
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPR 448
R P P P P P P +PP + ++
Sbjct: 71 RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTI------SELA 124
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
+ + + P P Y P P
Sbjct: 125 SCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGL 184
Query: 509 PPPP 512
P
Sbjct: 185 VLPY 188
Score = 45.9 bits (107), Expect = 5e-05
Identities = 25/174 (14%), Positives = 36/174 (20%), Gaps = 3/174 (1%)
Query: 425 RPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
R P P P P +P T + P P +P RPP
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARP---PAAPGRDQARPPARRR 69
Query: 485 PTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC 544
V P + + P P + P + Q
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Query: 545 YLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPR 598
+ + C P + P Y + P P
Sbjct: 130 ARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183
Score = 45.5 bits (106), Expect = 6e-05
Identities = 27/166 (16%), Positives = 38/166 (22%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 415
P P PP T +P PA ++ R RPP P P + +
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
P P P P + I + P + T C + +
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
+ P P P A P
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPG 180
Score = 43.2 bits (100), Expect = 4e-04
Identities = 23/177 (12%), Positives = 32/177 (18%), Gaps = 2/177 (1%)
Query: 392 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
RP PP P T P +P P P R
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P+T P + + P D
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTS--AQDQDTISELASCLQRA 130
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYP 568
+ + P P C +P + L P + P
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187
Score = 43.2 bits (100), Expect = 4e-04
Identities = 30/173 (17%), Positives = 41/173 (23%), Gaps = 1/173 (0%)
Query: 471 SPDPRCPRPPPSPTPTTPA-PLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDP 529
PR P + +PA P + P S+ R PP P PP
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 530 RCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYP 589
T P SP + + P++ PP S
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134
Query: 590 GSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCP 642
+ + G + C P L PG P P
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187
Score = 42.8 bits (99), Expect = 4e-04
Identities = 24/161 (14%), Positives = 28/161 (17%), Gaps = 3/161 (1%)
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 418
RP P P P P T P Q P P
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARP---PAR 67
Query: 419 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
R S T I S + P +P +
Sbjct: 68 RRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCL 127
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAP 519
L + C P P AP
Sbjct: 128 QRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 42.8 bits (99), Expect = 5e-04
Identities = 25/176 (14%), Positives = 32/176 (18%), Gaps = 5/176 (2%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
R P P P P RP P R
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
+ +TP P C + + + P P I S R
Sbjct: 73 SVDEVSSPSTPEAPDIPAC---PSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Query: 423 CPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
A G + P P P + P P
Sbjct: 130 ARELGARVRALKASAQD--AGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183
Score = 42.4 bits (98), Expect = 6e-04
Identities = 28/191 (14%), Positives = 35/191 (18%), Gaps = 16/191 (8%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
P P PP T +PA RP P T + P PG
Sbjct: 15 PGPPRIAPPKLACRTPSPA--------------RPALRAPASATSGSRKRARPPAAPGRD 60
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 416
R P ++P+ P + P P T
Sbjct: 61 QARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQ--D 118
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRC 476
+ A C P Y
Sbjct: 119 TISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQ 178
Query: 477 PRPPPSPTPTT 487
P P P
Sbjct: 179 PGLPGLVLPYK 189
Score = 41.6 bits (96), Expect = 0.001
Identities = 27/177 (15%), Positives = 36/177 (20%), Gaps = 2/177 (1%)
Query: 369 PTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP 428
P P P P RP P T + P PG R P
Sbjct: 11 ARRRPGPPRIAPPKLACRTPS-PARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 429 SPTPTTTPAPICYPGS-NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT 487
+ P + + P CPSP + T + S + +
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Query: 488 PAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC 544
L + P P P R P
Sbjct: 130 ARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVL 186
Score = 41.3 bits (95), Expect = 0.002
Identities = 28/169 (16%), Positives = 35/169 (20%), Gaps = 6/169 (3%)
Query: 289 PPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP- 347
P P C P P+ PA R P P P R
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 348 PPICYPGSPDPRCPRPPPSP-----TPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
+ P +P+ PSP T P L +
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
+ S P P P PA + P P
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183
Score = 38.2 bits (87), Expect = 0.011
Identities = 25/175 (14%), Positives = 39/175 (22%), Gaps = 1/175 (0%)
Query: 497 SSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY-LGSPDPRCPR 555
PR P P PA ++ R P P Q R
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 556 PLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSID 615
SSPS P P + + P + + + + + +
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134
Query: 616 PRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPT 670
R + C P + +P + P V P
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189
Score = 36.6 bits (83), Expect = 0.042
Identities = 30/178 (16%), Positives = 36/178 (20%), Gaps = 5/178 (2%)
Query: 524 PGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
PG P+ TP P P R P S P +P RPP+
Sbjct: 15 PGPPRIAPPKLACRTPSPA-----RPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 584 EYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPR 643
+ P P P P S R
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Query: 644 PPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYP 701
S P +P P G +P P L P
Sbjct: 130 ARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187
Score = 36.3 bits (82), Expect = 0.052
Identities = 21/166 (12%), Positives = 28/166 (16%), Gaps = 4/166 (2%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
R P PP P A P R P + P R P+
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRA----RPPAAPGRDQARPPA 66
Query: 563 PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQ 622
+ P P C + P
Sbjct: 67 RRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASC 126
Query: 623 PPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPP 668
+ S +P P P P+
Sbjct: 127 LQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQR 172
Score = 32.4 bits (72), Expect = 0.83
Identities = 28/184 (15%), Positives = 41/184 (22%), Gaps = 8/184 (4%)
Query: 530 RCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYP 589
RP P PP R P P + P R P +P + P
Sbjct: 11 ARRRPGPPRIAPP-----KLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPP 65
Query: 590 GSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSP 649
R ++ T P CP P TP + S
Sbjct: 66 ARRRLRLSVDEVSSPSTPEAPDI---PACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISE 122
Query: 650 TPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTDPRCP 709
+C + + R ++Q P + P P
Sbjct: 123 LASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP 182
Query: 710 REEI 713
+
Sbjct: 183 GLVL 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 2e-05
Identities = 46/329 (13%), Positives = 84/329 (25%), Gaps = 104/329 (31%)
Query: 24 RDRPVAPLVNQASEIHVHYFH-QINFERTCALHPKGQFPTKANFLLKPTSEL-----QSH 77
R + V ++ A+ H+ H + +L +L ++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLL---LKYLDCRPQDLPREVLTTN 326
Query: 78 RVAQAVIALKARDRPVAPLIWIN----NSSPVRQNLLLCYKSNLIPITTYIQYNSSPVRQ 133
++IA RD W N N + + L P +
Sbjct: 327 PRRLSIIAESIRDG---LATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMF------D 376
Query: 134 NLLLCYKSNLIPITTYIQY--NSSP--VRQNLLLCYKSNLI-----PITTYI-------- 176
L + S IP + V + +K +L+ T I
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 177 ---------------QYN-SSPVRQNLLLKNVPD---YS--------ASREENDLGF--I 207
YN + L+ D YS E F +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 208 TFD---LQANLTKI----FNWN--------VKQLFLYLTAEYITPSNVLNQVVLWDRI-- 250
D L+ KI WN ++QL Y YI ++ + ++ +
Sbjct: 497 FLDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFYK--PYICDNDPKYERLVNAILDF 551
Query: 251 -------ILRGENADL---KFKNMNTKYY 269
++ + DL + +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 40.2 bits (93), Expect = 0.003
Identities = 49/291 (16%), Positives = 82/291 (28%), Gaps = 92/291 (31%)
Query: 33 NQASEIHVHYFHQINFERTCALHPKGQFPTKANFL-LKPTSELQSH----RVAQAVI--- 84
Q S + Y Q + L+ Q K N L+P +L+ R A+ V+
Sbjct: 103 RQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 85 ---------ALKA-RDRPVA-----PLIWINNSSPVRQNLLLCYKSNLIPITTYIQYNSS 129
AL V + W+N ++ C +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKN----CNSPETVLE--------- 200
Query: 130 PVRQNLLLCYKSNLIPITTYIQYNSSPVRQNLLLCYKSNLIPITTYIQYNSSPVRQNLL- 188
+ Q LL N + + + +R + + L+ Y LL
Sbjct: 201 -MLQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAELRRLLKSKPY--------ENCLLV 249
Query: 189 LKNVPDYSASREENDLGFITFDLQANLTKIFNWNVKQLFLYLTAEYITPSNVLNQVVLWD 248
L NV + A FN + K L LT + V + +
Sbjct: 250 LLNVQN------------------AKAWNAFNLSCKIL---LTTRF---KQVTDFLSAAT 285
Query: 249 RIILRGENADLKFKNMNTKYYFWDDGKGL--KITTPRPTTQPPPICYPGSP 297
+ ++ + T D+ K L K RP P + +P
Sbjct: 286 TTHISLDHHSMTL----TP----DEVKSLLLKYLDCRPQDLPREVL-TTNP 327
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 46.0 bits (108), Expect = 4e-05
Identities = 17/110 (15%), Positives = 22/110 (20%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
P RP P P P + A PGS+ P P P+P G
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRP 578
T + +P
Sbjct: 79 SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128
Score = 40.6 bits (94), Expect = 0.002
Identities = 14/96 (14%), Positives = 20/96 (20%)
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
+ P PPPP + P S + P + +P G
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPS 482
+ TT GS
Sbjct: 80 SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115
Score = 40.6 bits (94), Expect = 0.002
Identities = 12/89 (13%), Positives = 19/89 (21%)
Query: 496 GSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPR 555
G +PPPPPP + A P S + +P P
Sbjct: 21 GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80
Query: 556 PLPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
+ + +
Sbjct: 81 LSNAVKQTTAAAAATFSEQVGGGSGGAGR 109
Score = 40.6 bits (94), Expect = 0.002
Identities = 12/92 (13%), Positives = 20/92 (21%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
G +PPPPPP +P T + P +P+P ++
Sbjct: 21 GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80
Query: 381 CYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
+
Sbjct: 81 LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGA 112
Score = 38.3 bits (88), Expect = 0.010
Identities = 14/90 (15%), Positives = 22/90 (24%)
Query: 323 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCY 382
N + P PPPPP + P + P SP + ++
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
SN + T +
Sbjct: 80 SLSNAVKQTTAAAAATFSEQVGGGSGGAGR 109
Score = 37.9 bits (87), Expect = 0.013
Identities = 13/121 (10%), Positives = 17/121 (14%), Gaps = 11/121 (9%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
P RP P P P + +P P P
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASP-----------GATPGSAAASAERASTAAPVASPAAP 67
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
S + TT A +
Sbjct: 68 SPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDW 127
Query: 414 C 414
Sbjct: 128 A 128
Score = 37.5 bits (86), Expect = 0.018
Identities = 14/107 (13%), Positives = 21/107 (19%)
Query: 429 SPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
S + P Y P PPP + P + P SP +P
Sbjct: 10 SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69
Query: 489 APLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPT 535
S + + G+
Sbjct: 70 GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
Score = 36.4 bits (83), Expect = 0.038
Identities = 9/113 (7%), Positives = 15/113 (13%), Gaps = 2/113 (1%)
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 449
P P P P +P + T +P +
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASP--GATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
+ S L+
Sbjct: 76 GFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128
Score = 36.0 bits (82), Expect = 0.047
Identities = 17/107 (15%), Positives = 25/107 (23%), Gaps = 8/107 (7%)
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
P RP P P P + +P PG + T P P +P P
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPG------SAAASAERASTAAPVAS--PAAPSPG 70
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
+ + A ++ A V
Sbjct: 71 SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVL 117
Score = 36.0 bits (82), Expect = 0.049
Identities = 10/97 (10%), Positives = 13/97 (13%)
Query: 327 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSN 386
P P P P + P +P P+P G
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
G
Sbjct: 78 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Score = 36.0 bits (82), Expect = 0.054
Identities = 12/62 (19%), Positives = 15/62 (24%)
Query: 832 SPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYP 891
P P P P P + P + P SP P+P
Sbjct: 15 MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74
Query: 892 GS 893
G
Sbjct: 75 GG 76
Score = 36.0 bits (82), Expect = 0.059
Identities = 9/119 (7%), Positives = 15/119 (12%), Gaps = 7/119 (5%)
Query: 360 CPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 419
P + P P P P P
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSA-------ASPGATPGSAAASAERASTAAPVASPAAPSPG 70
Query: 420 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
S + + + R + P +
Sbjct: 71 SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129
Score = 35.2 bits (80), Expect = 0.096
Identities = 16/120 (13%), Positives = 23/120 (19%), Gaps = 9/120 (7%)
Query: 524 PGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P RP P PPP + S P +P+P
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAA---------SPGATPGSAAASAERASTAAPVASPAAPSP 69
Query: 584 EYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPR 643
G TT + + + L P +
Sbjct: 70 GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129
Score = 34.4 bits (78), Expect = 0.17
Identities = 15/97 (15%), Positives = 19/97 (19%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPT 392
P RP PPP + +T +P PGS+
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 429
TT GS
Sbjct: 79 SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115
Score = 34.1 bits (77), Expect = 0.20
Identities = 17/102 (16%), Positives = 23/102 (22%), Gaps = 2/102 (1%)
Query: 615 DPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPF 674
P P P P TP S + P SP S S+ Q
Sbjct: 30 QPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTT 89
Query: 675 IPVGLT--PFVCTCNVTTPRPIPPPLCYPGSTDPRCPREEIY 714
T V + R +P + +
Sbjct: 90 AAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYF 131
Score = 32.9 bits (74), Expect = 0.53
Identities = 10/93 (10%), Positives = 17/93 (18%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P P P P+ P + +P + +P +
Sbjct: 24 TDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN 83
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
+ T G R
Sbjct: 84 AVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
Score = 31.7 bits (71), Expect = 1.2
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 843 PGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDP 896
P RP P P P+ P + A P P +P P
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAA---SPGATPGSAAASAERASTAAPVASPAAPSP 69
Score = 31.7 bits (71), Expect = 1.2
Identities = 12/63 (19%), Positives = 14/63 (22%), Gaps = 3/63 (4%)
Query: 611 PGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPT 670
P RPQPP P P+ S T P + P
Sbjct: 19 PNGYMTDLQRPQPPPPPPSA---ASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Query: 671 SQP 673
Sbjct: 76 GFF 78
Score = 30.2 bits (67), Expect = 2.9
Identities = 16/115 (13%), Positives = 18/115 (15%), Gaps = 19/115 (16%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
P RP PPP P P +P A +
Sbjct: 19 PNGYMTDLQRPQPPPPP--------PSAASPGATPGSAAASAE-----------RASTAA 59
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P P G T A R
Sbjct: 60 PVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Score = 29.8 bits (66), Expect = 4.1
Identities = 9/57 (15%), Positives = 14/57 (24%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAP 886
+ + A P S + P + P G + TT A
Sbjct: 36 PSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAA 92
Score = 29.8 bits (66), Expect = 4.8
Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 624 PQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPF 674
P T L P P P P SP TP S + + + P
Sbjct: 19 PNGYMTDLQRPQPPPPP-PSAASPGATPGSAAASAERASTAAPVASPAAPS 68
Score = 29.4 bits (65), Expect = 5.4
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTT 883
P P+ +P PGS R + +P PGS LS
Sbjct: 33 PPPPSAASPGAT-PGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAV 85
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 45.0 bits (106), Expect = 8e-05
Identities = 17/149 (11%), Positives = 29/149 (19%), Gaps = 6/149 (4%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
+ P T ++ I P PP +P T+ P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHA-ALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQ-----P 410
P+ P P P S P + P + P
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124
Query: 411 PPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
+ + + +
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTF 153
Score = 39.6 bits (92), Expect = 0.003
Identities = 15/145 (10%), Positives = 26/145 (17%), Gaps = 5/145 (3%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS 385
+ P+ ++ I P P +P +P+
Sbjct: 3 KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62
Query: 386 NDP-----RCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPIC 440
+ P T+ P I D P S C
Sbjct: 63 HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKC 122
Query: 441 YPGSNDPRCPSPPPTTPRPTTQPPP 465
P + +
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKH 147
Score = 39.6 bits (92), Expect = 0.004
Identities = 19/161 (11%), Positives = 30/161 (18%), Gaps = 17/161 (10%)
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
P+ + A + S PP +P T+ P
Sbjct: 12 QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P+ + P P T P + P S
Sbjct: 72 YGHFPSRA-------------IKSEYPDPYTSSPESIMGYSYMDSYQTS----SPASIPH 114
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS 526
L C P + + + G
Sbjct: 115 LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155
Score = 39.2 bits (91), Expect = 0.005
Identities = 20/158 (12%), Positives = 28/158 (17%), Gaps = 5/158 (3%)
Query: 428 PSPTPTTTPAPICYPGSNDPR-CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPT 486
+ + P S+ + S P PP Y SP P S T
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSP---FVTSPISMTMP 61
Query: 487 TPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYL 546
L Y P P T+ + D + P L
Sbjct: 62 PHGSLQGYQTYG-HFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 547 GSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPE 584
+
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCK 158
Score = 39.2 bits (91), Expect = 0.005
Identities = 16/147 (10%), Positives = 22/147 (14%)
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPP 399
Q P S + P P PP
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 400 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRP 459
P PDP P + + ++ P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPT 486
Q + R T
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLST 152
Score = 36.1 bits (83), Expect = 0.042
Identities = 15/130 (11%), Positives = 25/130 (19%), Gaps = 4/130 (3%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
++ P+ + P R P +P + P P
Sbjct: 28 HSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDP 87
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
T+ P I D S + L C P +
Sbjct: 88 YTSSPESIMGYSYMDS----YQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQAN 143
Query: 403 TPRPTTQPPP 412
+
Sbjct: 144 RSKHEKLSTF 153
Score = 32.7 bits (74), Expect = 0.55
Identities = 22/147 (14%), Positives = 34/147 (23%), Gaps = 3/147 (2%)
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCY 588
+ + P+ PL + PP Y SP P + P
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 589 PGSIDPRCPRPPPTTQ--ETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPS 646
P ++ + Y P SI SP + + +C P
Sbjct: 68 GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKC-EPDE 126
Query: 647 PSPTPTCYPGSPDPRCRPSVPPPTSQP 673
P + S S
Sbjct: 127 PQVQAKIMAYLQQEQANRSKHEKLSTF 153
Score = 30.7 bits (69), Expect = 2.1
Identities = 16/157 (10%), Positives = 24/157 (15%), Gaps = 16/157 (10%)
Query: 509 PPPPPPTTPAPPVCYPGS------NDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P S + + PP
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 563 PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDP------ 616
Y S P+ P + P P SI
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPD----PYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 617 RCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTC 653
+C +P + R + C
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 157
Score = 30.7 bits (69), Expect = 2.4
Identities = 15/67 (22%), Positives = 16/67 (23%), Gaps = 3/67 (4%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P PP Y SP P S T P P + P P
Sbjct: 34 LPLNHAALPPTDYDRSP---FVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTS 90
Query: 890 YPGSPDP 896
P S
Sbjct: 91 SPESIMG 97
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 45.1 bits (106), Expect = 8e-05
Identities = 17/140 (12%), Positives = 30/140 (21%), Gaps = 6/140 (4%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
G P S P+ P +P + +
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAP----SLHPSLGPGIGSPGQLHSPISTLS 60
Query: 390 CPTR--PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P PP + P + P P+ P ++ I P +
Sbjct: 61 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 448 RCPSPPPTTPRPTTQPPPVC 467
P + + +C
Sbjct: 121 VLKVPAHPSGNMASFTKHIC 140
Score = 44.3 bits (104), Expect = 2e-04
Identities = 21/132 (15%), Positives = 31/132 (23%), Gaps = 4/132 (3%)
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
+ + + GS P P +P L + S P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQL--HSPISTLSSPINGMG 67
Query: 509 PPPPPPTTPAPPVCYPGSNDPR--CPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVC 566
PP ++P P P +P P S D + P L P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 567 YPGSPDPRCPRP 578
G+
Sbjct: 128 PSGNMASFTKHI 139
Score = 43.9 bits (103), Expect = 2e-04
Identities = 18/139 (12%), Positives = 26/139 (18%), Gaps = 9/139 (6%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP-- 450
G P PS P + + P
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN 64
Query: 451 --SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPP---SPTPTTPAPLVCYPGSSDPRCPTR 505
PP + P + P +P P SP + P
Sbjct: 65 GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124
Query: 506 PPPPPPPPPTTPAPP--VC 522
P P + +C
Sbjct: 125 PAHPSGNMASFTKHICAIC 143
Score = 42.8 bits (100), Expect = 4e-04
Identities = 16/137 (11%), Positives = 25/137 (18%), Gaps = 1/137 (0%)
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P +P+ + P P ++P
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS-PISTLSSP 62
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
PP P P +PT +P + PP
Sbjct: 63 INGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122
Query: 518 APPVCYPGSNDPRCPRP 534
P G+
Sbjct: 123 KVPAHPSGNMASFTKHI 139
Score = 42.4 bits (99), Expect = 6e-04
Identities = 14/131 (10%), Positives = 23/131 (17%)
Query: 502 CPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSP 561
+ +P + P P P Q + P P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 562 SPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRP 621
+ P P P P P + + G +
Sbjct: 70 FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPS 129
Query: 622 QPPQPSPTPLC 632
+C
Sbjct: 130 GNMASFTKHIC 140
Score = 42.0 bits (98), Expect = 8e-04
Identities = 16/130 (12%), Positives = 24/130 (18%), Gaps = 2/130 (1%)
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD--PRCPRPPP 481
+ + G PS P+ P + P S P PP
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
++P + P P P P P
Sbjct: 70 FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPS 129
Query: 542 PQCYLGSPDP 551
+
Sbjct: 130 GNMASFTKHI 139
Score = 40.1 bits (93), Expect = 0.003
Identities = 22/143 (15%), Positives = 31/143 (21%), Gaps = 13/143 (9%)
Query: 281 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTT 340
SP R PS P+ P P + P ++
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGP---------GIGSPGQLHSPISTLSS 61
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P PP P P +PT + +P +P + PP
Sbjct: 62 PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQ----LSSPMNPVSSSEDIKPPLG 117
Query: 401 PTTPRPTTQPPPICYPGSPDPRC 423
P C
Sbjct: 118 LNGVLKVPAHPSGNMASFTKHIC 140
Score = 39.3 bits (91), Expect = 0.006
Identities = 22/118 (18%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P+ + P+ P GSP +P P S P P
Sbjct: 27 PTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING----MGPPFSVISSPMGPHSM 82
Query: 510 PPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRC-PRPLPSSPSPPVC 566
P T P + P P + PP G P +S + +C
Sbjct: 83 SVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHIC 140
Score = 37.8 bits (87), Expect = 0.017
Identities = 13/121 (10%), Positives = 24/121 (19%), Gaps = 1/121 (0%)
Query: 531 CPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPG 590
+ + P + P P SP + P P +
Sbjct: 17 STQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSP-INGMGPPFSVISS 75
Query: 591 SIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPT 650
+ P P T + + + PL G + +
Sbjct: 76 PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASF 135
Query: 651 P 651
Sbjct: 136 T 136
Score = 37.0 bits (85), Expect = 0.024
Identities = 21/135 (15%), Positives = 29/135 (21%), Gaps = 3/135 (2%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP--PPPTTPAPPVCYPGSNDPRCPRP 534
+ + L G P+ P P P P+ S P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDP 594
P P P S+ SP + P +P P P
Sbjct: 70 FSVISSPMG-PHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 595 RCPRPPPTTQETYVC 609
T +C
Sbjct: 129 SGNMASFTKHICAIC 143
Score = 35.8 bits (82), Expect = 0.056
Identities = 21/134 (15%), Positives = 31/134 (23%), Gaps = 5/134 (3%)
Query: 507 PPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVC 566
T + P P+ P +GSP S+ S P+
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMA---APSLHPSLGPGIGSPGQ--LHSPISTLSSPIN 64
Query: 567 YPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQP 626
G P P P V ++ P ++ V I P +
Sbjct: 65 GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124
Query: 627 SPTPLCYPGSPDPR 640
P S
Sbjct: 125 PAHPSGNMASFTKH 138
Score = 32.0 bits (72), Expect = 0.88
Identities = 20/129 (15%), Positives = 32/129 (24%), Gaps = 7/129 (5%)
Query: 588 YPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQP----SPTPLCYPGSPDP---R 640
+ +D + G P P SP L P S
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN 64
Query: 641 CPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCY 700
PP + P S P++ T P + + P + ++ P + L
Sbjct: 65 GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124
Query: 701 PGSTDPRCP 709
P
Sbjct: 125 PAHPSGNMA 133
Score = 32.0 bits (72), Expect = 1.1
Identities = 18/126 (14%), Positives = 25/126 (19%), Gaps = 5/126 (3%)
Query: 548 SPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETY 607
S P+ P P SP + P PP + +
Sbjct: 17 STQVNSSLTSPTGRGSM-AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISS 75
Query: 608 VCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVP 667
P S+ P P + S P G PS
Sbjct: 76 PMGPHSM----SVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 131
Query: 668 PPTSQP 673
+
Sbjct: 132 MASFTK 137
Score = 31.6 bits (71), Expect = 1.2
Identities = 19/142 (13%), Positives = 29/142 (20%), Gaps = 14/142 (9%)
Query: 558 PSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPR 617
S V + +P+ PG P P +T + + G
Sbjct: 13 DKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSV 72
Query: 618 CPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPV 677
P P P P+ SP + P V + P
Sbjct: 73 ISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP---- 128
Query: 678 GLTPFVCTCNVTTPRPIPPPLC 699
+C
Sbjct: 129 ----------SGNMASFTKHIC 140
Score = 30.1 bits (67), Expect = 3.3
Identities = 11/82 (13%), Positives = 17/82 (20%), Gaps = 5/82 (6%)
Query: 826 HFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTT-- 883
+ + GS P P +P Q + P + P
Sbjct: 13 DKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSV 72
Query: 884 ---PAPPQCYPGSPDPWSQNTC 902
P P P +
Sbjct: 73 ISSPMGPHSMSVPTTPTLGFST 94
Score = 29.3 bits (65), Expect = 5.7
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 5/81 (6%)
Query: 827 FYRTPSPTTPAPPQCYPGSPDPRCP-----RPPPSPTTPAPPQCYPGSPDPRCPRPPLSP 881
+ + P +P Q + P P ++P P P SP
Sbjct: 38 LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 97
Query: 882 TTPAPPQCYPGSPDPWSQNTC 902
+P S D
Sbjct: 98 QLSSPMNPVSSSEDIKPPLGL 118
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 45.3 bits (107), Expect = 9e-05
Identities = 22/111 (19%), Positives = 23/111 (20%), Gaps = 15/111 (13%)
Query: 324 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYP 383
DP PT P P T P P P P P P P P
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAA--PTGDPKPKKNKKPKNPTP----- 53
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT 434
RP T + P PT T
Sbjct: 54 --------PRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 43.8 bits (103), Expect = 2e-04
Identities = 30/129 (23%), Positives = 35/129 (27%), Gaps = 26/129 (20%)
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
DP PT P P T P +P P PT P P +
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPA------TP----APPALGAAPTGDPKP---KKNKK 47
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSS-------- 498
P+ P+PP T R T VC P +
Sbjct: 48 PKNPTPPRPAGDNATVAAG-----HATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQ 102
Query: 499 DPRCPTRPP 507
RCPTRP
Sbjct: 103 PRRCPTRPE 111
Score = 43.4 bits (102), Expect = 3e-04
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 832 SPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYP 891
+PT+P P + P +P PA G P P+ + P +PT P P
Sbjct: 4 APTSPGTPGVAAATQAA--NGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 892 GSPDPWSQNT 901
+
Sbjct: 62 TVAAGHATLR 71
Score = 42.6 bits (100), Expect = 6e-04
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 15/120 (12%)
Query: 473 DPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCP 532
DP P P +P +++ T PP PT P +P P
Sbjct: 1 DPAAPTSPGTPGVAAATQ------AANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPP 54
Query: 533 RPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP-VCYPGS--------PDPRCPRPPSPTP 583
RP + + ++ + VC P + RCP P
Sbjct: 55 RPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114
Score = 42.3 bits (99), Expect = 8e-04
Identities = 22/131 (16%), Positives = 29/131 (22%), Gaps = 22/131 (16%)
Query: 294 PGSPD-PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 352
P +P P P + T P T PP T P +
Sbjct: 2 PAAPTSPGTPGVAAA-TQAANGGP-----------ATPAPPALGAAPTGDPKPKKN---- 45
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP--PPPPTTPRPTTQP 410
P+ P PP T + + T PPP +
Sbjct: 46 ---KKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQ 102
Query: 411 PPICYPGSPDP 421
P C
Sbjct: 103 PRRCPTRPEGQ 113
Score = 41.9 bits (98), Expect = 0.001
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Query: 511 PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPR-PLPSSPSPPVCYPG 569
P PT+P P + TP P G P P+ + P +P P
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 570 SPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTT 603
+ + + PP
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95
Score = 40.7 bits (95), Expect = 0.002
Identities = 30/132 (22%), Positives = 34/132 (25%), Gaps = 29/132 (21%)
Query: 361 PRPPPSP-TPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 419
P P SP TP T A P P PP PT P P +
Sbjct: 2 PAAPTSPGTPGVAAATQAA---------NGGPATPAPPALGAA---PTGDPKP---KKNK 46
Query: 420 DPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGS-------- 471
P+ P PP T A + T VC P +
Sbjct: 47 KPKNPTPPRPAGDNATVAA-----GHATLREHLRDIKAENTDANFYVCPPPTGATVVQFE 101
Query: 472 PDPRCPRPPPSP 483
RCP P
Sbjct: 102 QPRRCPTRPEGQ 113
Score = 40.3 bits (94), Expect = 0.003
Identities = 18/102 (17%), Positives = 21/102 (20%), Gaps = 1/102 (0%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
T+P P PT P P +P P RP
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPT-PPRPAGDNATVA 64
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVC 381
T + P PT T P C
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRC 106
Score = 40.3 bits (94), Expect = 0.003
Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 11/102 (10%)
Query: 454 PTTPRPTTQPP--PVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
PT+P G P P +PT P + P P
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 512 PPPTTPAPPVCYPGSNDPR-----CPRPTPTT----PPPPQC 544
T + + + CP PT T P +C
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRC 106
Score = 39.2 bits (91), Expect = 0.007
Identities = 28/122 (22%), Positives = 32/122 (26%), Gaps = 10/122 (8%)
Query: 420 DPRCPRPP--PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCP 477
DP P P P T A P P+PP PT P P +P P
Sbjct: 1 DPAAPTSPGTPGVAAATQAAN------GGPATPAPPALGAAPTGDPKPKKNKKPKNPTPP 54
Query: 478 RPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPT 537
RP D + PP T A V + RCP
Sbjct: 55 RPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFE--QPRRCPTRPEG 112
Query: 538 TP 539
Sbjct: 113 QN 114
Score = 36.1 bits (83), Expect = 0.060
Identities = 22/120 (18%), Positives = 25/120 (20%), Gaps = 21/120 (17%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
PT+ P + TP PT P P P
Sbjct: 5 PTSPGTPGVAAATQAA----NGGPATPAPPALGA---------APTGDPKPKKNKKPKNP 51
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGS--------NDPRCPTRPP 395
T P T VC P + RCPTRP
Sbjct: 52 TPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPE 111
Score = 35.3 bits (81), Expect = 0.11
Identities = 12/65 (18%), Positives = 16/65 (24%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
P TPAPP P+ P P PP+ + L
Sbjct: 21 NGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAE 80
Query: 890 YPGSP 894
+
Sbjct: 81 NTDAN 85
Score = 32.2 bits (73), Expect = 0.83
Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 8/106 (7%)
Query: 549 PDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYV 608
P P ++ + P P+ P+ +P PRP
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Query: 609 CYPGSIDPRCPRPQPPQPSPTPLCYPGS--------PDPRCPRPPS 646
+ + + +C P + RCP P
Sbjct: 66 GHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPE 111
Score = 31.9 bits (72), Expect = 1.0
Identities = 12/111 (10%), Positives = 21/111 (18%), Gaps = 1/111 (0%)
Query: 558 PSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPR 617
P++P+ P + + TP + + + D
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 618 CPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPP 668
P T RC P+ P
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRC-PTRPE 111
Score = 31.5 bits (71), Expect = 1.5
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 854 PPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDPWSQNTC 902
P +PT+P P + P +P PA G P P
Sbjct: 2 PAAPTSPGTPGVAAATQAA--NGGPATPAPPALGAAPTGDPKPKKNKKP 48
Score = 29.5 bits (66), Expect = 5.6
Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 5/99 (5%)
Query: 593 DPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPT 652
DP P P T + P P+ + +P +P+P
Sbjct: 1 DPAAPTSPGTPGVA----AATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRP 56
Query: 653 CYPGSPDPRCRPSVPPPTSQPFIPVGLTPF-VCTCNVTT 690
+ ++ F VC
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 43.1 bits (100), Expect = 3e-04
Identities = 20/180 (11%), Positives = 32/180 (17%), Gaps = 9/180 (5%)
Query: 386 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP---RPPPSPTPTTTPAPICYP 442
PR P + P C T T P PIC
Sbjct: 86 RSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPIC-- 143
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
C P ++ + +P+ S +P +
Sbjct: 144 ----INCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEI 199
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
P + + + + L S S
Sbjct: 200 CGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLS 259
Score = 42.4 bits (98), Expect = 7e-04
Identities = 18/172 (10%), Positives = 30/172 (17%), Gaps = 11/172 (6%)
Query: 323 NDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCY 382
PR P + P C + T T P P +C
Sbjct: 86 RSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTP-IC- 143
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR----CPRPPPSPTPTTTPAP 438
C + P CP + P
Sbjct: 144 -----INCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCE 198
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
IC + + + R + + ++
Sbjct: 199 ICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTG 250
Score = 42.0 bits (97), Expect = 9e-04
Identities = 17/253 (6%), Positives = 33/253 (13%), Gaps = 34/253 (13%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
P + + CP T P PIC
Sbjct: 92 LFFKDPSSKDELGKSAETASADVVSTWVCPI-CMVSNETQGEFTKDTLPTPIC------I 144
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY--- 415
C P ++ P P + P C
Sbjct: 145 NCGVPADYELTKSSINCSNA--------------IDPNANPQNQFGVNSENICPACTFAN 190
Query: 416 ----------PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
+ + + + + ++
Sbjct: 191 HPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTG 250
Query: 466 VCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPG 525
+ T L + +
Sbjct: 251 SSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYN 310
Query: 526 SNDPRCPRPTPTT 538
+ P
Sbjct: 311 NEVPFIETKLSRI 323
Score = 41.6 bits (96), Expect = 0.001
Identities = 12/167 (7%), Positives = 24/167 (14%), Gaps = 4/167 (2%)
Query: 278 KITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPP 337
+ CP S P C
Sbjct: 97 PSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTK 156
Query: 338 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPP 397
+ P +P + + P T +
Sbjct: 157 SSINCSNAIDP----NANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRS 212
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGS 444
+ + + S + +T + S
Sbjct: 213 KLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLS 259
Score = 35.0 bits (79), Expect = 0.13
Identities = 14/192 (7%), Positives = 23/192 (11%), Gaps = 19/192 (9%)
Query: 449 CPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP 508
P + CP S P C
Sbjct: 93 FFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADY 152
Query: 509 PPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPR-PLPSSPSPPVCY 567
+ P + + + CP + P C
Sbjct: 153 ELTKSSINCSNA--------------IDPNANPQNQFGVNSENICPACTFANHPQIGNC- 197
Query: 568 PGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPS 627
P + +
Sbjct: 198 ---EICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTE 254
Query: 628 PTPLCYPGSPDP 639
L + S
Sbjct: 255 FVQLSFRKSDGV 266
Score = 34.3 bits (77), Expect = 0.20
Identities = 14/165 (8%), Positives = 21/165 (12%), Gaps = 12/165 (7%)
Query: 591 SIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPT 650
+ CP + P P C P+
Sbjct: 93 FFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADY 152
Query: 651 PTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCT------------CNVTTPRPIPPPL 698
P +Q + CT C P
Sbjct: 153 ELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRS 212
Query: 699 CYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSSTFQ 743
+ S + Q
Sbjct: 213 KLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQ 257
Score = 33.5 bits (75), Expect = 0.38
Identities = 20/164 (12%), Positives = 31/164 (18%), Gaps = 3/164 (1%)
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRP-LPSSPSPPVCYPGSPDPRCPRPPSPTPEYVC 587
+ CP + + P P C P Y
Sbjct: 96 DPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD-YEL 154
Query: 588 YPGSIDPRCPRPPPTTQETYVCYPGSID-PRCPRPQPPQPSPTPLCYPGSPDPRCPRPPS 646
SI+ P + P C PQ +C P+ R
Sbjct: 155 TKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKL 214
Query: 647 PSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTT 690
+ +S + + T V
Sbjct: 215 NRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQL 258
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 39.5 bits (93), Expect = 0.003
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPIC-YPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
P PP P PT P +T P P +P RPP + P PA +
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Score = 38.0 bits (89), Expect = 0.009
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPIC-YPGSPDPRCPRPPPSPTPTTTPA 437
P PP P PT P +T P P +P RPP + P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPR 49
Score = 36.8 bits (86), Expect = 0.024
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 833 PTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
P P P YP P + T P P +P RPP + A P+
Sbjct: 2 PQLPPAPDDYPT--------FPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPR 49
Score = 34.1 bits (79), Expect = 0.17
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 503 PTRPPPPP--PPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSS 560
P PP P P P T PV +P P P P PP +P+
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFP--ELPAAPYGGPCRPPQ------HTSKAAAPRIPAD 53
Query: 561 PSP 563
P
Sbjct: 54 RLP 56
Score = 34.1 bits (79), Expect = 0.18
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 857 PTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDP 896
P P P YP PD P + P PA P P P
Sbjct: 2 PQLPPAPDDYPTFPD-TSTWPVVFPELPAAPYGGPCRPPQ 40
Score = 33.7 bits (78), Expect = 0.25
Identities = 15/59 (25%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
P P P YP PD P P AP P P P P
Sbjct: 2 PQLPPAPDDYPTFPD---TSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPN 57
Score = 33.3 bits (77), Expect = 0.32
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 432 PTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
P PAP Y P+ P T+ P P P +P RPP + +
Sbjct: 2 PQLPPAPDDY--------PTFPDTSTWPVVFPEL---PAAPYGGPCRPPQHTSKAAAPRI 50
Score = 33.3 bits (77), Expect = 0.33
Identities = 14/52 (26%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 514 PTTPAPPVCYPGSND-PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPP 564
P P P YP D P P P P P P S + P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPY-----GGPCRPPQHTSKAAAP 48
Score = 32.9 bits (76), Expect = 0.41
Identities = 15/55 (27%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 624 PQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPS--VPPPTSQPFIP 676
PQ P P YP PD P Y G P S P +P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
Score = 32.9 bits (76), Expect = 0.42
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 310 PTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 369
P PAP YP D T P P P P PP + PR P P
Sbjct: 2 PQLPPAPDDYPTFPDT--STWPVVFPELPAAPYGGPCRPP---QHTSKAAAPRIPADRLP 56
Score = 32.6 bits (75), Expect = 0.49
Identities = 17/72 (23%), Positives = 18/72 (25%), Gaps = 16/72 (22%)
Query: 459 PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P P P YP PD P P P P PP A
Sbjct: 2 PQLPPAPDDYPTFPD---TSTWPVVFPELP-----------AAPYGGPCRPPQHTSKAAA 47
Query: 519 PPVCYPGSNDPR 530
P + P P
Sbjct: 48 PRI--PADRLPN 57
Score = 32.6 bits (75), Expect = 0.50
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 4/56 (7%)
Query: 293 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
+P P P T T P+ +P P PP + P
Sbjct: 1 FPQLPPAPDDYPTFPDTSTW---PVVFP-ELPAAPYGGPCRPPQHTSKAAAPRIPA 52
Score = 32.2 bits (74), Expect = 0.73
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 358 PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
P+ P P P PT T+ P+V P PP + P
Sbjct: 2 PQLP-PAPDDYPTFPDTSTWPVV--FPELPAAPYGGPCRPPQHTSKAAAPRIPA 52
Score = 31.4 bits (72), Expect = 1.3
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 610 YPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPT 652
+P P P S P+ +P P P P +
Sbjct: 1 FPQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTS 43
Score = 29.9 bits (68), Expect = 3.5
Identities = 17/66 (25%), Positives = 19/66 (28%), Gaps = 13/66 (19%)
Query: 536 PTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSP--DPRCPRPPSPTPEYVCYPGSID 593
P PP P Y PD + PV +P P P P P I
Sbjct: 2 PQLPPAPDDYPTFPDT---------STWPVVFPELPAAPYGGPCRPPQHTSKAAAP-RIP 51
Query: 594 P-RCPR 598
R P
Sbjct: 52 ADRLPN 57
Score = 29.5 bits (67), Expect = 4.1
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 415 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDP 474
+P P P T T P+ +P +P RP P P
Sbjct: 1 FPQLPPAPDDYPTFPDTSTW---PVVFP----ELPAAPYGGPCRPPQHTSKAAAPRIPAD 53
Query: 475 RCPR 478
R P
Sbjct: 54 RLPN 57
Score = 29.5 bits (67), Expect = 4.9
Identities = 13/59 (22%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
P P P P P ++ P P RP P P R P
Sbjct: 2 PQLPPAPDDYPTF---PDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPN 57
Score = 28.7 bits (65), Expect = 8.9
Identities = 14/59 (23%), Positives = 15/59 (25%), Gaps = 8/59 (13%)
Query: 406 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPP 464
P P P YP PD P P AP P P + P
Sbjct: 2 PQLPPAPDDYPTFPD---TSTWPVVFPELPAAP-----YGGPCRPPQHTSKAAAPRIPA 52
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 39.2 bits (91), Expect = 0.003
Identities = 27/144 (18%), Positives = 32/144 (22%), Gaps = 1/144 (0%)
Query: 320 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
P + P R + P P P P + P
Sbjct: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
+ T P P PPP+ P PP P P I
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205
Query: 440 CYPGSNDPRCPSPPPTTPRPTTQP 463
PG P PP P P
Sbjct: 206 -PPGRGTPMGMPPPGMRPPPPGMR 228
Score = 35.4 bits (81), Expect = 0.048
Identities = 29/150 (19%), Positives = 32/150 (21%), Gaps = 4/150 (2%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
PPP T PG P PA + P
Sbjct: 82 VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPP 513
T T + P P P P G P PPP P
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP----MGRGAPPPGMMGPPPGMRP 197
Query: 514 PTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P + P P PPP
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
Score = 35.0 bits (80), Expect = 0.077
Identities = 24/145 (16%), Positives = 26/145 (17%), Gaps = 1/145 (0%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
PPP + P P P P V P
Sbjct: 82 VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P + P YP P P P
Sbjct: 142 MT-PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSP 472
PP P PPP P P
Sbjct: 201 PPMGIPPGRGTPMGMPPPGMRPPPP 225
Score = 34.2 bits (78), Expect = 0.14
Identities = 22/133 (16%), Positives = 25/133 (18%)
Query: 301 CPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 360
P P G P P P R P
Sbjct: 91 GIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTV 150
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
+ T + G P PPP P PP+ P
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG 210
Query: 421 PRCPRPPPSPTPT 433
PPP P
Sbjct: 211 TPMGMPPPGMRPP 223
Score = 33.9 bits (77), Expect = 0.18
Identities = 29/144 (20%), Positives = 32/144 (22%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P P T PL G P P P P+ G P +
Sbjct: 82 VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P T A + P P P P P RPP P
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGP 201
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPP 507
P G P PP
Sbjct: 202 PMGIPPGRGTPMGMPPPGMRPPPP 225
Score = 30.0 bits (67), Expect = 3.1
Identities = 28/146 (19%), Positives = 33/146 (22%), Gaps = 3/146 (2%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
PP P G R P Q P + R P
Sbjct: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPA---GLAGPVRGVGGPSQQVM 142
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY 545
T ++ P PP PP G+ P P P PP
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Query: 546 LGSPDPRCPRPLPSSPSPPVCYPGSP 571
+G P R P PG
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPPPPGMR 228
Score = 29.6 bits (66), Expect = 4.1
Identities = 27/148 (18%), Positives = 31/148 (20%), Gaps = 4/148 (2%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P T A + G+ P P P G P PS
Sbjct: 82 VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141
Query: 486 TTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCY 545
TP G+ P P P P P PPP
Sbjct: 142 MTPQG----RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 546 LGSPDPRCPRPLPSSPSPPVCYPGSPDP 573
P P + P P P
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
Score = 28.5 bits (63), Expect = 8.3
Identities = 26/156 (16%), Positives = 29/156 (18%), Gaps = 5/156 (3%)
Query: 428 PSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT 487
S T P + P R + P G P P+ P P
Sbjct: 78 VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIP---AGVPMPQAPAGLAGPVRGV 134
Query: 488 PAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLG 547
P P YP P PPP
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASI--AGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192
Query: 548 SPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
P P G P P PP
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.9 bits (93), Expect = 0.004
Identities = 17/87 (19%), Positives = 26/87 (29%)
Query: 362 RPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
P + P+ A + + + + PP P P PP P P
Sbjct: 353 EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPP 412
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPR 448
+ P P P P P + P+
Sbjct: 413 QGYPPQGYPPPPQGAPPQGAPPAAPPQ 439
Score = 39.5 bits (92), Expect = 0.005
Identities = 18/104 (17%), Positives = 27/104 (25%), Gaps = 2/104 (1%)
Query: 351 CYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 410
C + + + P + AP + + P+ P
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP 396
Query: 411 PPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPP 454
P P P+ P P P P P P P+ PP
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAP--PAAPP 438
Score = 37.6 bits (87), Expect = 0.020
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 836 PAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPD 895
Q P P P P PPQ YP P P+ P APPQ P +
Sbjct: 380 KMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYP--PQGYPPQGYPPPPQGAPPQGAPPAAP 437
Query: 896 P 896
P
Sbjct: 438 P 438
Score = 36.8 bits (85), Expect = 0.027
Identities = 21/116 (18%), Positives = 23/116 (19%), Gaps = 8/116 (6%)
Query: 358 PRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPG 417
C T P P
Sbjct: 335 TCCQFDDKETEDDKDAETEIPAG--------ESSDAAPSADAAQMKEMMAMMQKMQQQQA 386
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPD 473
+ P+ PPP P P YP P PPP P PP P D
Sbjct: 387 AYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
Score = 36.4 bits (84), Expect = 0.039
Identities = 17/83 (20%), Positives = 17/83 (20%)
Query: 322 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVC 381
P Q P PP P P P
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQG 414
Query: 382 YPGSNDPRCPTRPPPPPPPPTTP 404
YP P P PP PP P
Sbjct: 415 YPPQGYPPPPQGAPPQGAPPAAP 437
Score = 36.1 bits (83), Expect = 0.049
Identities = 15/76 (19%), Positives = 20/76 (26%)
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTP 485
P + P P P PP P P+ P P P
Sbjct: 364 PSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPP 423
Query: 486 TTPAPLVCYPGSSDPR 501
AP P ++ P+
Sbjct: 424 PQGAPPQGAPPAAPPQ 439
Score = 35.7 bits (82), Expect = 0.062
Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 1/80 (1%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P+ + + PP P PP
Sbjct: 361 DAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGY 420
Query: 511 PPPPTTPAPPVCYPGSNDPR 530
PPPP APP P + P+
Sbjct: 421 PPPPQG-APPQGAPPAAPPQ 439
Score = 35.3 bits (81), Expect = 0.079
Identities = 15/60 (25%), Positives = 17/60 (28%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
+ P P P YP P P PP P P PP P +P
Sbjct: 378 MQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437
Score = 35.3 bits (81), Expect = 0.082
Identities = 17/86 (19%), Positives = 18/86 (20%), Gaps = 3/86 (3%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
P + P P P PP PP
Sbjct: 356 AGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQ-GYPPQGYPPQG 414
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPP 365
P PPP P P P PP
Sbjct: 415 YPPQGYPPPPQGAP--PQGAPPAAPP 438
Score = 35.3 bits (81), Expect = 0.094
Identities = 20/92 (21%), Positives = 23/92 (25%), Gaps = 4/92 (4%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
P + + P PPP P PP YP
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQG-YPPQGYP-- 411
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P+ P P P P AP P D
Sbjct: 412 PQGYPPQGYPPP-PQGAPPQGAPPAAPPQGVD 442
Score = 34.5 bits (79), Expect = 0.14
Identities = 18/90 (20%), Positives = 19/90 (21%), Gaps = 9/90 (10%)
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP-- 511
P P + P P P P PP
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQG 414
Query: 512 -PPPTTPAPPVCYPGSNDPRCPRPTPTTPP 540
PP P PP P P P PP
Sbjct: 415 YPPQGYPPPPQGAPPQGAP------PAAPP 438
Score = 34.5 bits (79), Expect = 0.17
Identities = 20/108 (18%), Positives = 22/108 (20%), Gaps = 3/108 (2%)
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
+ T P P + Q P PP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 481 PSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
P P P PPPP P APP P D
Sbjct: 398 QGYPPQGYPP---QGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
Score = 33.4 bits (76), Expect = 0.38
Identities = 14/99 (14%), Positives = 18/99 (18%), Gaps = 5/99 (5%)
Query: 322 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVC 381
+ P P + + + P P
Sbjct: 349 DAETEIPAGESSDAAPSADAAQMKEMMAMMQKM-----QQQQAAYPPQGYAPPPQGYPPQ 403
Query: 382 YPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
PP PPP P PP P D
Sbjct: 404 GYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
Score = 32.6 bits (74), Expect = 0.56
Identities = 16/88 (18%), Positives = 17/88 (19%), Gaps = 5/88 (5%)
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPT 460
P P + P P P PP P
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYP--- 411
Query: 461 TQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
P G P P PP P P
Sbjct: 412 --PQGYPPQGYPPPPQGAPPQGAPPAAP 437
Score = 31.4 bits (71), Expect = 1.2
Identities = 19/113 (16%), Positives = 24/113 (21%), Gaps = 6/113 (5%)
Query: 474 PRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPR 533
C A + P + P +
Sbjct: 335 TCCQFDDKETEDDKDA------ETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY 388
Query: 534 PTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYV 586
P PPPQ Y P P P P P PP+ P+ V
Sbjct: 389 PPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441
Score = 30.7 bits (69), Expect = 2.5
Identities = 20/126 (15%), Positives = 24/126 (19%), Gaps = 15/126 (11%)
Query: 314 PAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 373
P + +D P P + P
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390
Query: 374 TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT 433
AP PP PP P P G P P PP P
Sbjct: 391 QGYAP---------------PPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPA 435
Query: 434 TTPAPI 439
P +
Sbjct: 436 APPQGV 441
Score = 29.5 bits (66), Expect = 5.2
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 810 QLNKELGLTDDKKEFAHFYRTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGS 869
KE+ K + P P PPQ YP P+ P P G
Sbjct: 369 AQMKEMMAMMQKMQQQQAAYPPQGYAP-PPQGYP-------PQGYPPQGYPPQGYPPQGY 420
Query: 870 PDPRCPRPPLSPTTPAPPQ 888
P P PP APPQ
Sbjct: 421 PPPPQGAPPQGAPPAAPPQ 439
Score = 29.1 bits (65), Expect = 6.4
Identities = 19/102 (18%), Positives = 25/102 (24%), Gaps = 14/102 (13%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPR 530
P + + + P PPP P
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYP------------- 401
Query: 531 CPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPD 572
P+ P PPQ Y P P+ P +PP P D
Sbjct: 402 -PQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 39.9 bits (92), Expect = 0.005
Identities = 49/420 (11%), Positives = 71/420 (16%), Gaps = 53/420 (12%)
Query: 325 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P + + P P P+ + T Y
Sbjct: 471 DLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQS-GTYGE 529
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSP--TPTTTPAPICYP 442
+ + + P + Y S C P P
Sbjct: 530 NCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEED 589
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
+ + P D CP+P P Y D
Sbjct: 590 CTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVE- 648
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC-YLGSPDPRCPRPLPSSP 561
+ G RC +C P L +P
Sbjct: 649 ------------ISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITP 696
Query: 562 SPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRP 621
+ G + E C G + Y C S P
Sbjct: 697 FQRLYRIGE-----------SIELTCPKGFV--------VAGPSRYTCQGNSWTP----- 732
Query: 622 QPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTP 681
P D + GS + P L
Sbjct: 733 ------PISNSLTCEKDT-LTKLKGHCQLGQKQSGSE----CICMSPEEDCSHHSEDLCV 781
Query: 682 FVCTCNVTTPRPIPPPLCYPGSTDPRCPREEIYPTQQIPSFCFPGSIDPRCPKPLRPSST 741
F N P L + + I Q G R +
Sbjct: 782 FDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQD-GRQLEWGLERTRLSSNSTKKES 840
Score = 32.5 bits (73), Expect = 0.71
Identities = 37/366 (10%), Positives = 59/366 (16%), Gaps = 56/366 (15%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTT---TPAPICYPGSNDPRCPTRPPPPPPPPT 339
+ + P P P+ + T Y + + + P
Sbjct: 488 KALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQW 547
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPP------SPTPTTTPTTPAPLVCYPG--------- 384
+ Y S C P P +
Sbjct: 548 GCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDE 607
Query: 385 -----SNDPRCPTRPPPPPPPPTTPRPTTQPPPICY--------------PGSPDPRCPR 425
P P PP + G RC
Sbjct: 608 EMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRC-- 665
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP-DPRCPRPPPSPT 484
C C P T + G + C P
Sbjct: 666 --LPDGTWRQGDVEC----QRTECIKPVVQEVLTITPFQRLYRIGESIELTC---PKGFV 716
Query: 485 PTTPAPLVCYPGS---SDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
P+ C S T GS C +P
Sbjct: 717 VAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGS---ECICMSPEEDCS 773
Query: 542 PQCYLGSP-DPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPP 600
D S + + + + + R
Sbjct: 774 HHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSS 833
Query: 601 PTTQET 606
+T++
Sbjct: 834 NSTKKE 839
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 39.1 bits (91), Expect = 0.006
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 2/86 (2%)
Query: 276 GLKITTPRPTTQPPPICYP--GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP 333
G + P+ +Q P P S TP+ + + G + P P
Sbjct: 1 GSNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEP 60
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPR 359
T P P +
Sbjct: 61 KLFGGFNSSDTVTSPQRAGPLAGGVT 86
Score = 38.3 bits (89), Expect = 0.010
Identities = 9/80 (11%), Positives = 14/80 (17%)
Query: 504 TRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSP 563
+ P P + T P P + P
Sbjct: 3 NKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKL 62
Query: 564 PVCYPGSPDPRCPRPPSPTP 583
+ S P+ P
Sbjct: 63 FGGFNSSDTVTSPQRAGPLA 82
Score = 37.9 bits (88), Expect = 0.014
Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 15/95 (15%)
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPP 507
+ + R + +P P S TP+ PA
Sbjct: 4 KSKPKDASQRRRSLEPAE----NVHGAGGGAFPASQTPSKPAS-----------ADGHRG 48
Query: 508 PPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P P P + ++ P P
Sbjct: 49 PSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAG 83
Score = 37.5 bits (87), Expect = 0.018
Identities = 15/96 (15%), Positives = 20/96 (20%), Gaps = 14/96 (14%)
Query: 398 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P + R + +P P S TP P S D P+
Sbjct: 7 PKDASQRRRSLEPAE----NVHGAGGGAFPASQTP-------SKPASADGH---RGPSAA 52
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVC 493
P + G P P
Sbjct: 53 FAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTF 88
Score = 37.2 bits (86), Expect = 0.024
Identities = 9/83 (10%), Positives = 14/83 (16%), Gaps = 4/83 (4%)
Query: 326 RCPTRPPPPPPPPTTPRP-TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
+ + P +P S P P + PA
Sbjct: 4 KSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAA---AEP 60
Query: 385 SNDPRCPTRPPPPPPPPTTPRPT 407
+ P P
Sbjct: 61 KLFGGFNSSDTVTSPQRAGPLAG 83
Score = 36.4 bits (84), Expect = 0.045
Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 8/88 (9%)
Query: 335 PPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRP 394
P + R + +P P S TP+ + G + P
Sbjct: 7 PKDASQRRRSLEPAE----NVHGAGGGAFPASQTPSKPASADGH----RGPSAAFAPAAA 58
Query: 395 PPPPPPPTTPRPTTQPPPICYPGSPDPR 422
P T P P +
Sbjct: 59 EPKLFGGFNSSDTVTSPQRAGPLAGGVT 86
Score = 34.9 bits (80), Expect = 0.13
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 1/83 (1%)
Query: 611 PGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPT 670
+ + S TP P S D + +P +V P
Sbjct: 18 EPAENVHGAGGGAFPASQTP-SKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQ 76
Query: 671 SQPFIPVGLTPFVCTCNVTTPRP 693
+ G+T FV + +
Sbjct: 77 RAGPLAGGVTTFVALYDYESRTE 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 38.7 bits (90), Expect = 0.008
Identities = 17/163 (10%), Positives = 25/163 (15%), Gaps = 24/163 (14%)
Query: 382 YPGSNDPRCPTRPPPPPPPP---------TTPRPTTQPP---------PICYPGSPDPRC 423
G P P P P +
Sbjct: 276 RNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQDT 335
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P P + +P+ + + + P
Sbjct: 336 GVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTA------NEIVTALSVPLV 389
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGS 526
PT A V T A V + S
Sbjct: 390 DPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSES 432
Score = 38.3 bits (89), Expect = 0.012
Identities = 11/94 (11%), Positives = 18/94 (19%), Gaps = 1/94 (1%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGS-NDPRC 449
P P +T + + T P+ P
Sbjct: 340 PGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVAASVL 399
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
+ + P T G+ D S
Sbjct: 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433
Score = 35.6 bits (82), Expect = 0.093
Identities = 13/119 (10%), Positives = 17/119 (14%), Gaps = 18/119 (15%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
+ D PRP S + P+R +
Sbjct: 330 VVAQDTGVPRPGLSTIFS----------------PSRSTFGVDLLVAHTDVYLDGQV--H 371
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P PT A V T
Sbjct: 372 AEKLTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFS 430
Score = 32.9 bits (75), Expect = 0.61
Identities = 10/109 (9%), Positives = 15/109 (13%), Gaps = 5/109 (4%)
Query: 475 RCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRP 534
R + P P G S P+R + +
Sbjct: 325 GVLREVVAQDTGVPRP-----GLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANE 379
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTP 583
T P + S
Sbjct: 380 IVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVD 428
Score = 32.5 bits (74), Expect = 0.70
Identities = 10/104 (9%), Positives = 18/104 (17%), Gaps = 2/104 (1%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
T P P +P+ G + L + + +P
Sbjct: 334 DTGVPRPGLSTIFSPSRST--FGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDP 391
Query: 563 PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQET 606
V +P + E
Sbjct: 392 TDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVEL 435
Score = 32.1 bits (73), Expect = 1.0
Identities = 11/107 (10%), Positives = 17/107 (15%), Gaps = 5/107 (4%)
Query: 446 DPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTR 505
+ P +T P D A + T
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAE-----KLTANEIVTA 383
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPR 552
P P A + + P + D
Sbjct: 384 LSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFS 430
Score = 31.0 bits (70), Expect = 2.3
Identities = 8/124 (6%), Positives = 14/124 (11%), Gaps = 17/124 (13%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
PRP + +
Sbjct: 327 LREVVAQDTGVPRPGLSTIFSPSRSTFGVD-LLVAHTDVYLDGQVH-----------AEK 374
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
T P+ P + P + R
Sbjct: 375 LTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSL-----RAARHGALDADGVDF 429
Query: 513 PPTT 516
+
Sbjct: 430 SESV 433
Score = 30.6 bits (69), Expect = 3.2
Identities = 9/117 (7%), Positives = 15/117 (12%), Gaps = 13/117 (11%)
Query: 279 ITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP 338
+ P + SP T +
Sbjct: 330 VVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLD-------GQVHAEKLTANEIVT 382
Query: 339 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPP 395
P P + P T + D +
Sbjct: 383 ALSVPLV------DPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 38.5 bits (89), Expect = 0.009
Identities = 22/130 (16%), Positives = 29/130 (22%), Gaps = 5/130 (3%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
R P R PG+ D + PS I PG + P
Sbjct: 35 AARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPS-----RDRNIGAPGQDTPGVS 89
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP 510
P + P +P D P + P + P P
Sbjct: 90 LHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGR 149
Query: 511 PPPPTTPAPP 520
P P
Sbjct: 150 SGLELEPEEP 159
Score = 38.1 bits (88), Expect = 0.014
Identities = 29/146 (19%), Positives = 38/146 (26%), Gaps = 11/146 (7%)
Query: 400 PPTTPRPTTQ--PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTP 457
P T + + G P R + PG+ D + P+
Sbjct: 22 PAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEK------PGATDRKGGVGMPSRD 75
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
R P PG P P APL G S P+ P PP T
Sbjct: 76 RNIGAPGQD-TPGVSLHPLSLDSPDREPGADAPL--ELGDSSPQGPMSLESLAPPESTDE 132
Query: 518 APPVCYPGSNDPRCPRPTPTTPPPPQ 543
P D P + P +
Sbjct: 133 GAETESPEPGDEGEPGRSGLELEPEE 158
Score = 37.4 bits (86), Expect = 0.020
Identities = 19/143 (13%), Positives = 29/143 (20%), Gaps = 10/143 (6%)
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
R P + ++ +P+ P + P R
Sbjct: 18 RSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRN 77
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
PG P P P A G + P+ P + PP
Sbjct: 78 IGA----------PGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPP 127
Query: 542 PQCYLGSPDPRCPRPLPSSPSPP 564
G+ P
Sbjct: 128 ESTDEGAETESPEPGDEGEPGRS 150
Score = 37.0 bits (85), Expect = 0.026
Identities = 21/137 (15%), Positives = 25/137 (18%), Gaps = 12/137 (8%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP-PPSPTPTTTPTTPAPLVCYPGSN 386
R P R PG+ D + P P P
Sbjct: 35 AARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPGQDTPG------- 87
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
+ P P P + P P T A P D
Sbjct: 88 ----VSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGD 143
Query: 447 PRCPSPPPTTPRPTTQP 463
P P P
Sbjct: 144 EGEPGRSGLELEPEEPP 160
Score = 33.9 bits (77), Expect = 0.30
Identities = 18/129 (13%), Positives = 26/129 (20%), Gaps = 9/129 (6%)
Query: 337 PPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPP 396
P T + + + P+ P P
Sbjct: 22 PAKTKKGLSSILD---AARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNI 78
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTT 456
P TP + P P +P +P P S + P
Sbjct: 79 GAPGQDTPGVSLHPL-----SLDSPDREPGADAPLELGDSSP-QGPMSLESLAPPESTDE 132
Query: 457 PRPTTQPPP 465
T P P
Sbjct: 133 GAETESPEP 141
Score = 29.3 bits (65), Expect = 7.1
Identities = 19/158 (12%), Positives = 28/158 (17%), Gaps = 7/158 (4%)
Query: 497 SSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRP 556
R P + G +P+ P G+ D +
Sbjct: 13 VMGNRRSDEPAKTKKGLSSILDAARWNRG--EPQVPDFRHLKAEVDAEKPGATDRKGGVG 70
Query: 557 LPSSPSP---PVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPGS 613
+PS P SP E P P
Sbjct: 71 MPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPL--ELGDSSPQGPMSLESLAPPE 128
Query: 614 IDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTP 651
+ P+P + PP
Sbjct: 129 STDEGAETESPEPGDEGEPGRSGLELEPEEPPGWRELV 166
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 37.1 bits (86), Expect = 0.012
Identities = 10/66 (15%), Positives = 14/66 (21%)
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
P PP C + + +P +P S PT
Sbjct: 146 PSTPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPV 205
Query: 517 PAPPVC 522
C
Sbjct: 206 ATATSC 211
Score = 32.0 bits (73), Expect = 0.65
Identities = 11/61 (18%), Positives = 14/61 (22%), Gaps = 2/61 (3%)
Query: 320 PGSNDPRCPTRPPPPP--PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPA 377
P P C T P Q +P S P + +P A
Sbjct: 149 PNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 378 P 378
Sbjct: 209 T 209
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 6/71 (8%)
Query: 419 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
P P+PP + I + + P T P P P
Sbjct: 146 PSTPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVP------THSTVSE 199
Query: 479 PPPSPTPTTPA 489
SP T +
Sbjct: 200 LSRSPVATATS 210
Score = 29.7 bits (67), Expect = 3.3
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP-P 411
P P C + T +P + P P P + +
Sbjct: 149 PNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 412 PIC 414
C
Sbjct: 209 TSC 211
Score = 29.4 bits (66), Expect = 3.9
Identities = 10/60 (16%), Positives = 13/60 (21%), Gaps = 2/60 (3%)
Query: 383 PGSNDPRCPTRPPPPP--PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPIC 440
P P C T P Q +P S P + +P
Sbjct: 149 PNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Score = 29.4 bits (66), Expect = 3.9
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P PP C + + +P A +P S PT +
Sbjct: 146 PSTPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPT---HSTVSELSR 202
Query: 342 RPTTQPPP 349
P
Sbjct: 203 SPVATATS 210
Score = 28.6 bits (64), Expect = 7.1
Identities = 11/63 (17%), Positives = 14/63 (22%)
Query: 305 PPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPP 364
P+P P + P T P P P S R P
Sbjct: 148 TPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVAT 207
Query: 365 PSP 367
+
Sbjct: 208 ATS 210
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 38.1 bits (88), Expect = 0.013
Identities = 27/212 (12%), Positives = 45/212 (21%), Gaps = 18/212 (8%)
Query: 268 YYFWDDGKGLKITTPRPTTQPPPI--CYPGSPDPR--------CPRPPPSPTPTTTPAPI 317
G+G + T+ P + G P+ C PT T
Sbjct: 114 DGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTV---T 170
Query: 318 CYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP-RPPPSPTPTTTPTTP 376
Y G+ T P + P+ + +C + S + P
Sbjct: 171 WYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWP 230
Query: 377 APLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
P + PT P G + + + T
Sbjct: 231 ES----PKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETK 286
Query: 437 APICYPGSNDPRCPSPPPTTPRPTTQPPPVCY 468
P C + P +
Sbjct: 287 TPECPSHTQPLGVYLLTPAVQDLWLRDKATFT 318
Score = 33.8 bits (77), Expect = 0.28
Identities = 27/199 (13%), Positives = 37/199 (18%), Gaps = 15/199 (7%)
Query: 504 TRPPPPPPPPPTTPAPPVCYPGSNDPR----CPRPTPTTPPPPQCYLGSPDPRCPRPLPS 559
P P P C ++ C + + R P
Sbjct: 126 HVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPE 185
Query: 560 SPSPPVCYPGSPDPRCPRPPSPTPEYVC---YPGSIDPRCPRPPPTTQETYVCYPGSIDP 616
Y S P EY C + S + P + + + P
Sbjct: 186 IQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245
Query: 617 ------RCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPT 670
P T G + T P P V T
Sbjct: 246 QAEGSLAKATTAPATTRNTGR--GGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT 303
Query: 671 SQPFIPVGLTPFVCTCNVT 689
TC V
Sbjct: 304 PAVQDLWLRDKATFTCFVV 322
Score = 33.4 bits (76), Expect = 0.31
Identities = 21/191 (10%), Positives = 37/191 (19%), Gaps = 11/191 (5%)
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPT----PTTTPTTPAPLVCYPGSNDPRCPTRPPPPP 398
P +P R P+ T T + Y G+ T P
Sbjct: 129 SAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQR 188
Query: 399 PPPTTPRPTTQPPPICYPGSPDPRCP-RPPPSPTPTTTPAPICYPGSNDPRCPSPPP--- 454
+ P+ + +C + S + P + P+ P
Sbjct: 189 RDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAE 248
Query: 455 ---TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
G + + + C + P
Sbjct: 249 GSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQD 308
Query: 512 PPPTTPAPPVC 522
A C
Sbjct: 309 LWLRDKATFTC 319
Score = 31.9 bits (72), Expect = 1.0
Identities = 10/122 (8%), Positives = 24/122 (19%), Gaps = 11/122 (9%)
Query: 431 TPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
+ +TP G + + + P + +P +
Sbjct: 197 SQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATT 256
Query: 491 LVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPD 550
++ + P+ P YL +P
Sbjct: 257 APATTRNTGRGGEEKKKEKEKEEQEER-----------ETKTPECPSHTQPLGVYLLTPA 305
Query: 551 PR 552
+
Sbjct: 306 VQ 307
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator,
protein binding; NMR {Homo sapiens}
Length = 411
Score = 37.8 bits (86), Expect = 0.016
Identities = 23/189 (12%), Positives = 40/189 (21%), Gaps = 9/189 (4%)
Query: 259 LKFKNMNTKYYFW--------DDGKGLKIT-TPRPTTQPPPICYPGSPDPRCPRPPPSPT 309
LKFK + + +FW D+ K+ P + GS
Sbjct: 100 LKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGG 159
Query: 310 PTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTP 369
+ + + P P
Sbjct: 160 LQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAA 219
Query: 370 TTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 429
T +T + P + P + P P P + +T P D + +
Sbjct: 220 VTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMN 279
Query: 430 PTPTTTPAP 438
Sbjct: 280 VPAGPAGGQ 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.017
Identities = 49/310 (15%), Positives = 76/310 (24%), Gaps = 132/310 (42%)
Query: 604 QETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPD---- 659
++ Y Y + + S L + + +
Sbjct: 174 RDLYQTYHVLVGDLI------KFSAETL---------SELIRTTLDAEKVFTQGLNILEW 218
Query: 660 ---PRCRPSVP----PPTSQPFIPVGLTPFVC---TCNVT--TPRPIPPPLCYPGSTDPR 707
P P P S P I G+ T + TP + L G+T
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLK--GATG-- 272
Query: 708 CPR--------------EEIYP-TQQIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLP 752
+ E + ++ + F I RC + P T LPP
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLF--FIGVRC------YEAY-PNTSLPP-- 321
Query: 753 DSASEYSIKRDVG----------------------LNCH-PGS--------NDPKCNEIS 781
S E S++ + G N H P N K +S
Sbjct: 322 -SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 782 IPPNNQKGGLLRTESSSLGKGEVHEALFQLNKEL-------GLTDDKKEFAHFYRTPS-- 832
PP ++L+ LN L GL + F+ R
Sbjct: 381 GPP---------------------QSLYGLNLTLRKAKAPSGLDQSRIPFSE--RKLKFS 417
Query: 833 ----PTTPAP 838
P +P
Sbjct: 418 NRFLPVA-SP 426
Score = 36.6 bits (84), Expect = 0.052
Identities = 16/136 (11%), Positives = 46/136 (33%), Gaps = 24/136 (17%)
Query: 167 SNLIPITTYIQYNSSPVRQNLLLKNVPDYSASREEND------------LGFITFDLQAN 214
L+P ++ + Q K +P+ + +D LG+++ ++ +
Sbjct: 19 VLLVPTASFFIAS---QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 215 LTKIFNWNVKQLFLYLTAEYITPSNVLNQVVLWDRIILRGENADLKFKNMNTKYYFWDDG 274
F+ + Y+ +++ + + +++ + +K K + Y
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDI-HALAA--KLLQENDTTLVKTKELIKNYI----- 127
Query: 275 KGLKITTPRPTTQPPP 290
+I RP +
Sbjct: 128 -TARIMAKRPFDKKSN 142
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 37.4 bits (87), Expect = 0.023
Identities = 9/58 (15%), Positives = 14/58 (24%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
+ P P + T P C +P+ + P S D
Sbjct: 39 KDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGKTALDLVMQSKVFQAVLPQSED 96
Score = 32.0 bits (73), Expect = 0.85
Identities = 6/46 (13%), Positives = 10/46 (21%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
+ P P + T P C +P+
Sbjct: 39 KDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGKTALDLVMQS 84
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 36.5 bits (84), Expect = 0.023
Identities = 16/113 (14%), Positives = 22/113 (19%), Gaps = 5/113 (4%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P P + P P P P A +
Sbjct: 6 TQTFYGRRWRPAPVQRYIPQ-----PQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQK 60
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 443
+ P PP P+ T +P P P+ G
Sbjct: 61 RAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDG 113
Score = 35.0 bits (80), Expect = 0.073
Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 1/106 (0%)
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
P T +P PV P P+ LV G+ + +
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 512 PPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPL 557
P TP PP + + + P + C P+
Sbjct: 65 KPKKTP-PPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPV 109
Score = 33.5 bits (76), Expect = 0.24
Identities = 10/88 (11%), Positives = 16/88 (18%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPP 453
P P + P P +P R P + +
Sbjct: 6 TQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKK 65
Query: 454 PTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
P P + +P
Sbjct: 66 PKKTPPPKPKKTQKPKKPTQKKKSKPGK 93
Score = 32.7 bits (74), Expect = 0.39
Identities = 9/86 (10%), Positives = 18/86 (20%)
Query: 280 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPT 339
T +P P+ P P+ + G+ + + P
Sbjct: 8 TFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPK 67
Query: 340 TPRPTTQPPPICYPGSPDPRCPRPPP 365
P + +P
Sbjct: 68 KTPPPKPKKTQKPKKPTQKKKSKPGK 93
Score = 31.9 bits (72), Expect = 0.83
Identities = 14/99 (14%), Positives = 16/99 (16%)
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
P RP P P+P P P
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
P P T PG C +
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103
Score = 31.9 bits (72), Expect = 0.86
Identities = 17/99 (17%), Positives = 28/99 (28%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPS 562
PT+ P + P P R P+ LG+ + + +
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 563 PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPP 601
P P + +P PT + PG C +
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103
Score = 30.4 bits (68), Expect = 2.1
Identities = 14/94 (14%), Positives = 16/94 (17%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
P P P P P + R QP
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 357 DPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRC 390
P+ PP PG C
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNC 98
Score = 30.0 bits (67), Expect = 3.2
Identities = 19/123 (15%), Positives = 23/123 (18%), Gaps = 19/123 (15%)
Query: 419 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPR 478
P P P P P P P Q + P+ +
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQ-----PQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQ 59
Query: 479 PPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTT 538
P P P P PT PG C +
Sbjct: 60 KRAQKKPKKTPP------------PKPKKTQKPKKPTQKKKS--KPGKRMRNCMKIENDC 105
Query: 539 PPP 541
P
Sbjct: 106 IFP 108
Score = 29.2 bits (65), Expect = 5.1
Identities = 12/111 (10%), Positives = 15/111 (13%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 415
P P P P + +P +
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 416 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPV 466
P T PG C P V
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 28.4 bits (63), Expect = 8.3
Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 2/125 (1%)
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPP--PPPPTTPAPPVCYPGSNDPRCPRP 534
P PAP+ Y P P R P + + +
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDP 594
P PPP+ + + S P + + C P + Y +
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGD 124
Query: 595 RCPRP 599
+ +P
Sbjct: 125 KVMKP 129
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 37.1 bits (85), Expect = 0.025
Identities = 15/62 (24%), Positives = 22/62 (35%)
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
+++ I + + + P P T PT P P P P+ P PP
Sbjct: 288 ASSKSGNIWFAFNSNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVK 347
Query: 403 TP 404
TP
Sbjct: 348 TP 349
Score = 35.2 bits (80), Expect = 0.079
Identities = 11/43 (25%), Positives = 11/43 (25%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 373
P P PT P P P P PTP
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 35.2 bits (80), Expect = 0.079
Identities = 11/43 (25%), Positives = 11/43 (25%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
P P PT P P P P PTP
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 33.6 bits (76), Expect = 0.29
Identities = 12/41 (29%), Positives = 13/41 (31%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
P+ P PT P P P P PTP P
Sbjct: 309 PTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 30.9 bits (69), Expect = 1.8
Identities = 13/40 (32%), Positives = 14/40 (35%)
Query: 848 PRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
P P P +PT P P P P P PT P
Sbjct: 309 PTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 30.9 bits (69), Expect = 1.9
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 302 PRPPPSPT-PTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
P P +PT PT P P P+ P PP TP
Sbjct: 309 PTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 30.2 bits (67), Expect = 3.2
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 497 SSDPRCPTRPPPP-PPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
+S+ P P P PT P P P P PP +
Sbjct: 300 NSNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVK 347
Score = 29.8 bits (66), Expect = 3.8
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 434 TTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVC 493
TT +P + G+ + +++ + + + + P P T
Sbjct: 263 TTSSPNNWYGAIVGEITQSEISFNMASSKSGNIWFAFNSNINAIGVPTKPVAPTAPTQPM 322
Query: 494 YPGSSDPRCPTRPPPPPPPPPTTPAPPVCYP 524
Y P P P P P PPV P
Sbjct: 323 YE----TEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 29.8 bits (66), Expect = 4.0
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 851 PRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYP 891
P P +PT P P P P P P PP P
Sbjct: 309 PTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 37.3 bits (86), Expect = 0.026
Identities = 13/86 (15%), Positives = 21/86 (24%)
Query: 262 KNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 321
+ + KY +D L + I Y P + P+ P P
Sbjct: 59 RTLKNKYESYDAALSLHREILCYSKDAKEIYYTPDPSELAAKEEPAKEEAPAPTPAASAP 118
Query: 322 SNDPRCPTRPPPPPPPPTTPRPTTQP 347
+ P P +P
Sbjct: 119 APAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 35.3 bits (81), Expect = 0.10
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 3/56 (5%)
Query: 466 VCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
+ Y P + P+ S+ P P P A +
Sbjct: 88 IYYTPDPSELAAKEEPAKEEAPAPTP---AASAPAPAAAAPAPVAAAAPAAAAAEI 140
Score = 33.4 bits (76), Expect = 0.43
Identities = 10/61 (16%), Positives = 14/61 (22%), Gaps = 4/61 (6%)
Query: 350 ICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQ 409
I Y P + P+ PT A + P P +
Sbjct: 88 IYYTPDPSELAAKEEPAKEEAPAPTPAAS----APAPAAAAPAPVAAAAPAAAAAEIADE 143
Query: 410 P 410
P
Sbjct: 144 P 144
Score = 33.4 bits (76), Expect = 0.47
Identities = 9/64 (14%), Positives = 14/64 (21%)
Query: 317 ICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTP 376
I Y P P + P P +P + P
Sbjct: 88 IYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147
Query: 377 APLV 380
+ L+
Sbjct: 148 SLLL 151
Score = 31.5 bits (71), Expect = 1.8
Identities = 11/77 (14%), Positives = 16/77 (20%), Gaps = 11/77 (14%)
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
I Y P + P+ P P +P P P P +
Sbjct: 88 IYYTPDPSELAAKEEPAKEEAPAPTP---------AASAPAPAAAAPAPVAAAA--PAAA 136
Query: 473 DPRCPRPPPSPTPTTPA 489
P +
Sbjct: 137 AAEIADEPVKASLLLHV 153
Score = 30.3 bits (68), Expect = 3.8
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 377 APLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
A + Y P P + P P +P P P +
Sbjct: 85 AKEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPA--AAAPAPVAAAAPAAAAAEIAD 142
Query: 437 API 439
P+
Sbjct: 143 EPV 145
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.5 bits (86), Expect = 0.027
Identities = 18/180 (10%), Positives = 34/180 (18%), Gaps = 1/180 (0%)
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
P G+ S P PG+++ P
Sbjct: 5 PRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQR 64
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQ 462
P G+PD + + A + + + + T
Sbjct: 65 ATESAELPMKNNDEGTPDKK-GNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYS 123
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
+ + P +S PP ++ C
Sbjct: 124 DTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQC 183
Score = 35.6 bits (81), Expect = 0.098
Identities = 19/174 (10%), Positives = 28/174 (16%), Gaps = 1/174 (0%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
D S P + +P R P
Sbjct: 14 GKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPM 73
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
+ D P + + + + +
Sbjct: 74 KNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANEL 133
Query: 414 CYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVC 467
G+ D P T S P PPT VC
Sbjct: 134 SRSGNVDNEGGSNQ-KPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVC 186
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 37.2 bits (86), Expect = 0.032
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 262 KNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 321
+ + +KY +D ++ I Y +P P P+P ++
Sbjct: 59 RTLQSKYEAYDAATSVQRQILCYCKDAKEIYY--DVEPIEDEPEPTPAAASSADAAPAAA 116
Query: 322 SNDPRCPTRPPPPPPPPTTPRPTTQPPPI 350
P P P P P P Q P+
Sbjct: 117 PAAPAAPAAAPAPAPASAGPAAPVQDAPV 145
Score = 34.1 bits (78), Expect = 0.24
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 350 ICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQ 409
I Y +P P P+P ++ P P P P P P Q
Sbjct: 88 IYY--DVEPIEDEPEPTPAAASSADAAPA----AAPAAPAAPAAAPAPAPASAGPAAPVQ 141
Query: 410 PPPI 413
P+
Sbjct: 142 DAPV 145
Score = 33.4 bits (76), Expect = 0.46
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 466 VCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
+ Y +P P P+P + A + P P P P P PA PV
Sbjct: 88 IYY--DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASA-GPAAPV 140
Score = 32.2 bits (73), Expect = 0.95
Identities = 10/64 (15%), Positives = 14/64 (21%)
Query: 317 ICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTP 376
I Y P P P +P P P+ P T
Sbjct: 88 IYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Query: 377 APLV 380
++
Sbjct: 148 TDVI 151
Score = 32.2 bits (73), Expect = 1.0
Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 413 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSP 472
I Y P P P P+ + AP + P P P P P
Sbjct: 88 IYYDVEPIEDEPEPTPAAASSADAAP-----------AAAPAAPAAPAAAPAPAPASAGP 136
Query: 473 DPRCPRPPPSPTPTTPA 489
P + T A
Sbjct: 137 AAPVQDAPVTATDVIRA 153
Score = 29.9 bits (67), Expect = 4.7
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 22/83 (26%)
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSS 498
I Y +P P PT ++ + P P + PA
Sbjct: 88 IYY--DVEPIEDEPEPTPAAASSADAAPAAAPAA----PAAPAAAPAPAPA--------- 132
Query: 499 DPRCPTRPPPPPPPPPTTPAPPV 521
P P P
Sbjct: 133 -------SAGPAAPVQDAPVTAT 148
Score = 29.5 bits (66), Expect = 6.3
Identities = 9/63 (14%), Positives = 12/63 (19%), Gaps = 2/63 (3%)
Query: 377 APLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
A + Y P P P + P P
Sbjct: 85 AKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPA--APAAAPAPAPASAGPAAPVQD 142
Query: 437 API 439
AP+
Sbjct: 143 APV 145
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 36.2 bits (83), Expect = 0.053
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 617 RCPRPQPPQPSPTPLCYPGSPDPR-CPRPPSPSPTPTCYPG 656
RC +P + + P+ P P P P PT G
Sbjct: 558 RCTYQKPREDESEAVPAEVIVQPQPVPTPAFPFPAPTMVHG 598
Score = 34.7 bits (79), Expect = 0.15
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 448 RCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPT 484
RC P P V P P P P+PT
Sbjct: 558 RCTYQKPREDESEAVPAEVIVQPQPVPTPAFPFPAPT 594
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.2 bits (80), Expect = 0.064
Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
RP P P PR Q P+ + + + + P P +
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQ 71
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 443
+ P PP P P+P + P R R G
Sbjct: 72 -KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR-QRMALKLEADRLFDVKNEDG 123
Score = 33.2 bits (75), Expect = 0.26
Identities = 19/112 (16%), Positives = 27/112 (24%), Gaps = 5/112 (4%)
Query: 283 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPR 342
RP P + P P P + + + TRP P P P +
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQ 71
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRP 394
P P P+ P+P T P +
Sbjct: 72 KKQAPKQ-----PPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118
Score = 33.2 bits (75), Expect = 0.30
Identities = 17/112 (15%), Positives = 24/112 (21%)
Query: 458 RPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
RP P + P P P + + L + TRP P P PP
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQ 71
Query: 518 APPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPG 569
+ P + G + G
Sbjct: 72 KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDG 123
Score = 32.9 bits (74), Expect = 0.43
Identities = 16/114 (14%), Positives = 23/114 (20%), Gaps = 7/114 (6%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
RP P P PR Q P+ + + + +
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQA-------TRPQNPR 64
Query: 453 PPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRP 506
P PR Q P + P T P +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118
Score = 29.0 bits (64), Expect = 7.3
Identities = 19/126 (15%), Positives = 27/126 (21%), Gaps = 13/126 (10%)
Query: 422 RCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPP 481
R P P P+ P P+ + V P+ P
Sbjct: 11 RRPFPAPTAMWRPRRRRQAAPM------PARNGLASQIQQLTTAVSALVIGQATRPQNPR 64
Query: 482 SPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
P P+ P +P P P P PG +
Sbjct: 65 PRPPPRQKK-------QAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFD 117
Query: 542 PQCYLG 547
+ G
Sbjct: 118 VKNEDG 123
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 34.7 bits (79), Expect = 0.079
Identities = 27/129 (20%), Positives = 33/129 (25%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P P+ + T TPA L P P P P P P P P I P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 421 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPP 480
P+P + P +T P + PR
Sbjct: 87 KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146
Query: 481 PSPTPTTPA 489
P PA
Sbjct: 147 SRNQPQYPA 155
Score = 32.4 bits (73), Expect = 0.43
Identities = 26/149 (17%), Positives = 39/149 (26%), Gaps = 3/149 (2%)
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P + + ++ P P T P P P + P+P
Sbjct: 10 SSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIP 69
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
P +P P P P+ P+ +P + P S
Sbjct: 70 EPPKEAPVVIEKPKP---KPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSS 126
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPP 512
T T +S PR +R P P
Sbjct: 127 TATAATSKPVTSVASGPRALSRNQPQYPA 155
Score = 32.4 bits (73), Expect = 0.52
Identities = 16/127 (12%), Positives = 22/127 (17%)
Query: 299 PRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
P +P T P P P P P P P P
Sbjct: 29 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 418
+ P + T+ T+
Sbjct: 89 KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSR 148
Query: 419 PDPRCPR 425
P+ P
Sbjct: 149 NQPQYPA 155
Score = 30.1 bits (67), Expect = 2.7
Identities = 29/138 (21%), Positives = 33/138 (23%), Gaps = 8/138 (5%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P P T P P P P P P P AP
Sbjct: 26 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP--------V 77
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
+P P P P + QP P P P +P T+
Sbjct: 78 VIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVT 137
Query: 448 RCPSPPPTTPRPTTQPPP 465
S P R Q P
Sbjct: 138 SVASGPRALSRNQPQYPA 155
Score = 30.1 bits (67), Expect = 2.7
Identities = 22/136 (16%), Positives = 29/136 (21%)
Query: 284 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRP 343
+ I P P A P P P P PP P
Sbjct: 19 HMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 78
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
+P P P + + P + PA T P T+
Sbjct: 79 IEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTS 138
Query: 404 PRPTTQPPPICYPGSP 419
+ P P
Sbjct: 139 VASGPRALSRNQPQYP 154
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 35.4 bits (81), Expect = 0.083
Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 329 TRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
PP T T+ P P P + P P S
Sbjct: 9 LDPPSQDLKDGTQEEATKRQE--APVDPRPEGDPQRTVISWRGAVIEPEQGTELP-SRRA 65
Query: 389 RCPTRPPPPPP 399
PT+PP PP
Sbjct: 66 EVPTKPPLPPA 76
Score = 30.4 bits (68), Expect = 3.2
Identities = 13/86 (15%), Positives = 19/86 (22%), Gaps = 12/86 (13%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P++ + P PRP P T A + +
Sbjct: 12 PSQDLKDGTQEEATKRQEAPVD-----------PRPEGDPQRTVISWRGAVIE-PEQGTE 59
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPI 413
P PP R P +
Sbjct: 60 LPSRRAEVPTKPPLPPARTQGTPVHL 85
Score = 29.6 bits (66), Expect = 5.9
Identities = 10/79 (12%), Positives = 15/79 (18%), Gaps = 5/79 (6%)
Query: 277 LKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPP 336
L P+ + P P P P P
Sbjct: 5 LTCRLDPPSQDLKD--GTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVI---EPEQGTE 59
Query: 337 PPTTPRPTTQPPPICYPGS 355
P+ PP+ +
Sbjct: 60 LPSRRAEVPTKPPLPPART 78
Score = 29.2 bits (65), Expect = 7.3
Identities = 11/75 (14%), Positives = 13/75 (17%), Gaps = 6/75 (8%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCP 450
R PP P P P + +
Sbjct: 6 TCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIE--PEQGTEL--- 60
Query: 451 SPPPTTPRPTTQPPP 465
P PT P P
Sbjct: 61 -PSRRAEVPTKPPLP 74
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.6 bits (78), Expect = 0.16
Identities = 33/185 (17%), Positives = 44/185 (23%), Gaps = 10/185 (5%)
Query: 432 PTTTPAPICYPGS--NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPA 489
T T A G N + P P P G PR PP + P A
Sbjct: 18 ATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGA--VGERTPRKKEPPRASPPGGLA 75
Query: 490 PLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSP 549
PGS+ P+ P P T R S
Sbjct: 76 EP---PGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSE 132
Query: 550 DPRCPRPLPSSPS-PPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPP--TTQET 606
D ++ + P P P + + R P T +
Sbjct: 133 DEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHDRMTSQE 192
Query: 607 YVCYP 611
C+P
Sbjct: 193 AACFP 197
Score = 32.3 bits (72), Expect = 0.81
Identities = 18/136 (13%), Positives = 25/136 (18%), Gaps = 6/136 (4%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPIC-YPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 352
G PR PP + P P P P P +
Sbjct: 55 VGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTS--- 111
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
+ + + + + PPPPP P
Sbjct: 112 -RRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEK-EKKLPPPPPQAPPEEENESEPE 169
Query: 413 ICYPGSPDPRCPRPPP 428
R P
Sbjct: 170 EPSGVEGAAFQSRLPH 185
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 34.3 bits (79), Expect = 0.16
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 498 SDPRCPTRPPPPPPPPPTTPAPPVCYPGSN-DPRCPRPTPTTPPPP-------QCYLGSP 549
S P P+ P P P P+ P P D C P P C G
Sbjct: 365 SLPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAGRL 424
Query: 550 DP-RCPRPLPSSPSPPVC 566
CP L S S C
Sbjct: 425 FQQSCPTGLVFSNSCKCC 442
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 34.4 bits (79), Expect = 0.18
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 371 TTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP-RPTTQPPPICYPGSPDPRCPRPPP- 428
TT +P G++ P PP P P R ++ P Y + P
Sbjct: 2 TTSESPDAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSM-PVNRYRPFAEEVEPIRLRN 60
Query: 429 --SPTPTTTPAPI 439
P AP+
Sbjct: 61 RTWPDRVIDRAPL 73
Score = 33.6 bits (77), Expect = 0.33
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 285 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPP------ 338
TT P Y S P P P+ S+ P RP P
Sbjct: 2 TTSESPDAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNR 61
Query: 339 TTP-RPTTQPPPIC 351
T P R + P C
Sbjct: 62 TWPDRVIDRAPLWC 75
Score = 30.9 bits (70), Expect = 2.4
Identities = 13/58 (22%), Positives = 13/58 (22%)
Query: 460 TTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTP 517
TT P Y S P P SS P RP P
Sbjct: 2 TTSESPDAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNRYRPFAEEVEPIRLR 59
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 34.3 bits (79), Expect = 0.19
Identities = 6/63 (9%), Positives = 8/63 (12%), Gaps = 1/63 (1%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
+ P P P C P + G
Sbjct: 40 KHPQPFTGSYQGLKANDFSPAC-MQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGT 98
Query: 453 PPT 455
Sbjct: 99 VSM 101
Score = 33.2 bits (76), Expect = 0.41
Identities = 6/59 (10%), Positives = 9/59 (15%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
+ P P P C P + Y +
Sbjct: 40 KHPQPFTGSYQGLKANDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGT 98
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 34.2 bits (78), Expect = 0.22
Identities = 13/74 (17%), Positives = 14/74 (18%), Gaps = 4/74 (5%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 415
D R RP P P + RPP P P
Sbjct: 15 IDARAHRPLDKRQEAAPTLRPVA----PPISGTGYQPRPPKQDKQAMKKGPIIYPDAGGC 70
Query: 416 PGSPDPRCPRPPPS 429
D P
Sbjct: 71 KHPLDELGVLCPTG 84
Score = 31.5 bits (71), Expect = 1.4
Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRC 531
D R RP P P S RPP P+ YP + +
Sbjct: 15 IDARAHRPLDKRQEAAPTLRPVAPPISGTGYQPRPPKQDKQAMK--KGPIIYPDAGGCKH 72
Query: 532 PRPTPTTPPPPQC 544
P P C
Sbjct: 73 PLDELGVLCPTGC 85
Score = 31.1 bits (70), Expect = 1.8
Identities = 15/73 (20%), Positives = 16/73 (21%), Gaps = 6/73 (8%)
Query: 297 PDPRCPRPPPS---PTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
D R RP PT P P + RPP P P
Sbjct: 15 IDARAHRPLDKRQEAAPTLRPVA---PPISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCK 71
Query: 354 GSPDPRCPRPPPS 366
D P
Sbjct: 72 HPLDELGVLCPTG 84
Score = 30.4 bits (68), Expect = 2.9
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 11/74 (14%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P + P P PPI G PRPP PI YP +
Sbjct: 22 PLDKRQEAAPTLRPV-------APPISGTGYQ----PRPPKQDKQAMKKGPIIYPDAGGC 70
Query: 448 RCPSPPPTTPRPTT 461
+ P PT
Sbjct: 71 KHPLDELGVLCPTG 84
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 33.9 bits (78), Expect = 0.25
Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Query: 361 PRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 420
P SP ++ P P R P PP PT P + + P
Sbjct: 9 PHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPG-SLKAPDTRNEKLNS 67
Query: 421 PRCPRPPPSPTPTTTPA 437
R TT
Sbjct: 68 LEDVRKGSENYALTTNQ 84
Score = 33.2 bits (76), Expect = 0.51
Identities = 9/78 (11%), Positives = 16/78 (20%)
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGS 444
+P P + P + + +P P P+ +
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKL 65
Query: 445 NDPRCPSPPPTTPRPTTQ 462
N TT
Sbjct: 66 NSLEDVRKGSENYALTTN 83
Score = 30.5 bits (69), Expect = 3.5
Identities = 9/82 (10%), Positives = 17/82 (20%), Gaps = 5/82 (6%)
Query: 322 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVC 381
+P P + P + + +P P P+ +
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTR---- 61
Query: 382 YPGSNDPRCPTRPPPPPPPPTT 403
+ R TT
Sbjct: 62 -NEKLNSLEDVRKGSENYALTT 82
Score = 30.1 bits (68), Expect = 4.1
Identities = 12/77 (15%), Positives = 18/77 (23%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
+P + P + P + P P PP T + + P
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKL 65
Query: 356 PDPRCPRPPPSPTPTTT 372
R TT
Sbjct: 66 NSLEDVRKGSENYALTT 82
Score = 28.9 bits (65), Expect = 8.7
Identities = 13/88 (14%), Positives = 18/88 (20%), Gaps = 8/88 (9%)
Query: 402 TTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTT 461
P P+ P P A +P P PT P
Sbjct: 5 NEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAA--------EPTPPGAQPTAPGSLK 56
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPA 489
P + + + TT
Sbjct: 57 APDTRNEKLNSLEDVRKGSENYALTTNQ 84
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 34.2 bits (77), Expect = 0.26
Identities = 12/62 (19%), Positives = 14/62 (22%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P P RP Q PI P P P P + +
Sbjct: 3 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNAS 62
Query: 388 PR 389
P
Sbjct: 63 PD 64
Score = 32.3 bits (72), Expect = 0.77
Identities = 19/121 (15%), Positives = 26/121 (21%), Gaps = 12/121 (9%)
Query: 288 PPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 347
P P + + RP P + P PPPP P
Sbjct: 2 APAYGQPSAAMGQNMRPMNQLYPIDLL--------TELPPPITDLTLPPPPLVIPPERML 53
Query: 348 PPICYPGSPDPRCPRPPPSPTPTTTP---TTPAPLVCYPGSNDPRCPTRPPPPPPPPTTP 404
P + P R + P + + P PPP
Sbjct: 54 VPS-ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 112
Query: 405 R 405
Sbjct: 113 V 113
Score = 31.9 bits (71), Expect = 1.1
Identities = 24/124 (19%), Positives = 31/124 (25%), Gaps = 17/124 (13%)
Query: 463 PPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
P P + + RP P ++ P PPPP P +
Sbjct: 2 APAYGQPSAAMGQNMRPMNQLYPIDLL--------TELPPPITDLTLPPPPLVIPPERML 53
Query: 523 YP---GSNDPRCPRPTPTTPPPPQCYLGSPD------PRCPRPLPSSPSPPVCYPGSPDP 573
P + P R T P L R + L PP
Sbjct: 54 VPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIV 113
Query: 574 RCPR 577
RC R
Sbjct: 114 RCRR 117
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 33.8 bits (76), Expect = 0.28
Identities = 28/193 (14%), Positives = 41/193 (21%), Gaps = 5/193 (2%)
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRC 476
G C PAP C + CP P P + S C
Sbjct: 40 GEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFAC 99
Query: 477 PRPPPSPTPTTPAPLVCYPGS--SDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRP 534
+ + + C + R PT P PR
Sbjct: 100 ---KTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGC 156
Query: 535 TPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDP 594
P P+ P P+ + + P D P +V
Sbjct: 157 KPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTA 216
Query: 595 RCPRPPPTTQETY 607
+ T+
Sbjct: 217 QTQPREEQFNSTF 229
Score = 30.3 bits (67), Expect = 3.5
Identities = 32/247 (12%), Positives = 46/247 (18%), Gaps = 14/247 (5%)
Query: 295 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY-- 352
G C PAP C + CP P P + +
Sbjct: 40 GEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFAC 99
Query: 353 ------PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRP 406
G+ C + PT PT + P P +P
Sbjct: 100 KTNFSMNGNKSVWC-QANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKP 158
Query: 407 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPIC-----YPGSNDPRCPSPPPTTPRPTT 461
P P P+ + T T + T
Sbjct: 159 CICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQT 218
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
QP + + P C S+ P
Sbjct: 219 QPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLY 278
Query: 522 CYPGSND 528
P +
Sbjct: 279 TIPPPKE 285
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
Length = 1054
Score = 33.9 bits (78), Expect = 0.29
Identities = 32/217 (14%), Positives = 37/217 (17%), Gaps = 4/217 (1%)
Query: 304 PPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
PG R PP P P G R +
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 473
Query: 364 PPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
P PA G + P P P G P P
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAG 533
Query: 424 PRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSP 483
PR G+ P + PG R P
Sbjct: 534 PRGANGAPGNDGAKGD--AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA 591
Query: 484 TPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
G + P P P P
Sbjct: 592 DGAPGKD--GVRGLTGPIGPPGPAGAPGDKGEAGPSG 626
Score = 33.2 bits (76), Expect = 0.50
Identities = 44/223 (19%), Positives = 47/223 (21%), Gaps = 3/223 (1%)
Query: 294 PGSPDPRCPRPPPSPT-PTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 352
G P R P P P +P PG P P T P P
Sbjct: 340 AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGE 399
Query: 353 PGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
G P P P P PG R PP P P
Sbjct: 400 DGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 459
Query: 413 ICYPGSPDPRCPRPPPSPT-PTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGS 471
G R + P P P PG P G
Sbjct: 460 PGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGF 519
Query: 472 PDPRCPRPPPSPTPTTPAPLVC-YPGSSDPRCPTRPPPPPPPP 513
P R PP P A G+ P P
Sbjct: 520 PGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 562
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 32.6 bits (74), Expect = 0.29
Identities = 11/74 (14%), Positives = 15/74 (20%), Gaps = 6/74 (8%)
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
GS+ PR + P Y P + AP P
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAE------PAGRDYDYGQSGAPDYGQPAPGGYSG 55
Query: 503 PTRPPPPPPPPPTT 516
+ T
Sbjct: 56 YGQGGYGSAGTSVT 69
Score = 31.4 bits (71), Expect = 0.71
Identities = 8/62 (12%), Positives = 11/62 (17%)
Query: 612 GSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTS 671
GS P + + G R + G P P
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 672 QP 673
Sbjct: 62 GS 63
Score = 30.6 bits (69), Expect = 1.1
Identities = 11/72 (15%), Positives = 14/72 (19%), Gaps = 6/72 (8%)
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPG 443
GS+ P P+ P PAP Y G
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEP------AGRDYDYGQSGAPDYGQPAPGGYSG 55
Query: 444 SNDPRCPSPPPT 455
S +
Sbjct: 56 YGQGGYGSAGTS 67
Score = 30.2 bits (68), Expect = 1.4
Identities = 7/58 (12%), Positives = 9/58 (15%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
GS+ P P+ P P P
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQG 59
Score = 28.7 bits (64), Expect = 5.1
Identities = 7/62 (11%), Positives = 10/62 (16%)
Query: 352 YPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
+ PR P Y S P P +
Sbjct: 7 HHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGT 66
Query: 412 PI 413
+
Sbjct: 67 SV 68
Score = 28.3 bits (63), Expect = 7.0
Identities = 6/57 (10%), Positives = 8/57 (14%)
Query: 293 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPP 349
+ PR P P P P +
Sbjct: 7 HHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
Score = 28.3 bits (63), Expect = 7.3
Identities = 10/73 (13%), Positives = 12/73 (16%), Gaps = 5/73 (6%)
Query: 468 YPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSN 527
+ PR P A P D + P P G
Sbjct: 7 HHHHSSGLVPRGSHMPQGGGYAE----PAGRDYD-YGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 528 DPRCPRPTPTTPP 540
T
Sbjct: 62 GSAGTSVTLQLDD 74
Score = 27.9 bits (62), Expect = 9.8
Identities = 7/60 (11%), Positives = 10/60 (16%), Gaps = 1/60 (1%)
Query: 837 APPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQCYPGSPDP 896
+ + S P A P + P P Y
Sbjct: 4 SQHHHHHSSGLVPRGSHMPQGGGYAEPA-GRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 33.1 bits (76), Expect = 0.33
Identities = 7/66 (10%), Positives = 9/66 (13%), Gaps = 5/66 (7%)
Query: 478 RPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPT 537
R P R R P P+
Sbjct: 20 RRARREIRHLPN-----LNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYF 74
Query: 538 TPPPPQ 543
P+
Sbjct: 75 QSMGPE 80
Score = 28.9 bits (65), Expect = 8.3
Identities = 6/74 (8%), Positives = 9/74 (12%), Gaps = 9/74 (12%)
Query: 303 RPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 362
R N R R + P+
Sbjct: 20 RRARREIRHL---------PNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTE 70
Query: 363 PPPSPTPTTTPTTP 376
+ P
Sbjct: 71 NLYFQSMGPEDELP 84
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 33.1 bits (75), Expect = 0.46
Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 7/137 (5%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVC-YPGSN 386
PP R + S R PPP + T AP+ S
Sbjct: 312 AGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKAPVGNDASFSK 371
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
+P ++ RP P PS T T +P + ++
Sbjct: 372 EPVISASNFLGRSSGSSRRPAVSSSRDVMPIDT------SEPSRTRATDASPGAFRRTSG 425
Query: 447 PRCPSPPPTTPRPTTQP 463
P+ SP + +
Sbjct: 426 PQKSSPVNSAEPKHSSS 442
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 32.5 bits (73), Expect = 0.50
Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 273 DGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPP 332
+ G +I + QP I P + TPTT P T P
Sbjct: 154 NWYGNRIQSGYFVIQPGEINSA---------PIATATPTTKPTAFASTMPT----VTLTP 200
Query: 333 PPPPPPTTPRPTTQP 347
P TT PT P
Sbjct: 201 TPTATTTTTIPTAVP 215
Score = 32.2 bits (72), Expect = 0.52
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 336 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
P T PTT+P P +PTPT T TT P
Sbjct: 175 APIATATPTTKPTAFASTM------PTVTLTPTPTATTTTTIP 211
Score = 31.0 bits (69), Expect = 1.3
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 419 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPV 466
P P + TPTT P P+P TT P
Sbjct: 169 PGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAVPT 216
Score = 28.7 bits (63), Expect = 7.4
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 451 SPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPL 491
S P T PTT+P P P + T T P +
Sbjct: 174 SAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAV 214
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 32.9 bits (75), Expect = 0.60
Identities = 14/98 (14%), Positives = 15/98 (15%), Gaps = 21/98 (21%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICY-------PGSPDPRCPRPP--------------PSPT 368
R P P P T C PG P P+
Sbjct: 45 RKPVPAEPWHGVLDATGLSATCVQERYEYFPGFSGEEIWNPNTNVSEDCLYINVWAPAKA 104
Query: 369 PTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRP 406
G P T P
Sbjct: 105 RLRHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGLP 142
Score = 32.1 bits (73), Expect = 1.0
Identities = 10/98 (10%), Positives = 15/98 (15%), Gaps = 11/98 (11%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP-----------APICY 441
R P P P T C + T AP
Sbjct: 45 RKPVPAEPWHGVLDATGLSATCVQERYEYFPGFSGEEIWNPNTNVSEDCLYINVWAPAKA 104
Query: 442 PGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRP 479
+ + + + P
Sbjct: 105 RLRHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGLP 142
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 32.6 bits (73), Expect = 0.61
Identities = 23/152 (15%), Positives = 33/152 (21%), Gaps = 26/152 (17%)
Query: 500 PRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPT-----------------------P 536
+ P P P + P R T P
Sbjct: 11 TQERNILPMTPVWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHP 70
Query: 537 TTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCP--RPPSPTPEYVCYPGSIDP 594
+ S R + +P V + +C + PE Y
Sbjct: 71 FRDLTQLPVITSNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVNDVPEEFMYNPLTRS 130
Query: 595 RCPRP-PPTTQETYVCYPGSIDPRCPRPQPPQ 625
P Q + V + S D PQP
Sbjct: 131 YGEPHKRPEVQNSTVEFIASSDYMLRPPQPAV 162
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 32.2 bits (72), Expect = 0.75
Identities = 16/127 (12%), Positives = 28/127 (22%)
Query: 390 CPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 449
P+ P P T + P+ S ++ + S+
Sbjct: 173 LPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEG 232
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P T+ + P + P P + G P + P
Sbjct: 233 TVPDNTSSARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGEKSSTPIKGPKR 292
Query: 510 PPPPPTT 516
P
Sbjct: 293 GHPRQNL 299
Score = 29.2 bits (64), Expect = 6.9
Identities = 18/127 (14%), Positives = 24/127 (18%)
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRC 476
G+ PSP P P P P + P
Sbjct: 171 GTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQ 230
Query: 477 PRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTP 536
P T + + + P P + G P P
Sbjct: 231 EGTVPDNTSSARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGEKSSTPIKGP 290
Query: 537 TTPPPPQ 543
P Q
Sbjct: 291 KRGHPRQ 297
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 32.3 bits (74), Expect = 0.81
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 363
R P PP T + T+ PIC G + P
Sbjct: 48 RAPQDPPANQTLQSATEYGPIC-IGLDEEESPGD 80
Score = 32.3 bits (74), Expect = 0.81
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 426
R P PP T + T+ PIC G + P
Sbjct: 48 RAPQDPPANQTLQSATEYGPIC-IGLDEEESPGD 80
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 32.0 bits (73), Expect = 0.84
Identities = 6/48 (12%), Positives = 7/48 (14%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
TT T S + P A
Sbjct: 260 LDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAA 307
Score = 30.8 bits (70), Expect = 2.2
Identities = 5/45 (11%), Positives = 6/45 (13%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAP 438
TT T S + P
Sbjct: 260 LDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQ 304
Score = 29.3 bits (66), Expect = 6.0
Identities = 4/50 (8%), Positives = 6/50 (12%), Gaps = 2/50 (4%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
P T T + + P
Sbjct: 259 PLDAKKSAKTTAAGTVTVLD--QRTMASGQQAVAYLHDIASGRGYPLQAA 306
Score = 28.5 bits (64), Expect = 9.9
Identities = 2/44 (4%), Positives = 3/44 (6%), Gaps = 7/44 (15%)
Query: 499 DPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
P + T
Sbjct: 258 QPLDAKKSAKTTAAGTVTVLDQ-------RTMASGQQAVAYLHD 294
>3tu3_B EXOU; type III secretion system, SPC infectious diseases,
structural genomics, center for struct genomics of
infectious diseases, csgid; 1.92A {Pseudomonas
aeruginosa} PDB: 4akx_B*
Length = 711
Score = 32.4 bits (72), Expect = 0.88
Identities = 11/100 (11%), Positives = 15/100 (15%), Gaps = 11/100 (11%)
Query: 366 SPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPR 425
+ P TP+ A P P I P+
Sbjct: 38 NQEPVETPSQAAHK-----------SASLRQEPSGQGLGVALKSTPGILSGKLPESVSDV 86
Query: 426 PPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
SP + P
Sbjct: 87 RFSSPQGQGESRTLTDSAGPRQITLRQFENGVTELQLSRP 126
Score = 32.0 bits (71), Expect = 0.92
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Query: 307 SPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPS 366
+ P TP+ + ++ + P+ +TP + P P+
Sbjct: 38 NQEPVETPSQAAHKSASLRQEPSGQGLGVALKSTPGILSGKLP-ESVSDVRFSSPQGQGE 96
Query: 367 PTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPP 398
T P + N PP
Sbjct: 97 SRTLTDSAGPRQITLRQFENGVTELQLSRPPL 128
Score = 30.9 bits (68), Expect = 2.4
Identities = 11/90 (12%), Positives = 18/90 (20%), Gaps = 2/90 (2%)
Query: 341 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPP 400
P P + + + P +TP L + P
Sbjct: 39 QEPVETPSQAAHKSASLRQ--EPSGQGLGVALKSTPGILSGKLPESVSDVRFSSPQGQGE 96
Query: 401 PTTPRPTTQPPPICYPGSPDPRCPRPPPSP 430
T + P I + P
Sbjct: 97 SRTLTDSAGPRQITLRQFENGVTELQLSRP 126
Score = 30.9 bits (68), Expect = 2.6
Identities = 9/87 (10%), Positives = 16/87 (18%)
Query: 457 PRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTT 516
P P + + + P P + + R P +
Sbjct: 39 QEPVETPSQAAHKSASLRQEPSGQGLGVALKSTPGILSGKLPESVSDVRFSSPQGQGESR 98
Query: 517 PAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P R T +
Sbjct: 99 TLTDSAGPRQITLRQFENGVTELQLSR 125
Score = 30.1 bits (66), Expect = 4.0
Identities = 11/98 (11%), Positives = 19/98 (19%), Gaps = 2/98 (2%)
Query: 792 LRTESSSLGKGEVHEALFQLNKELGLTDDKKE--FAHFYRTPSPTTPAPPQCYPGSPDPR 849
L +SSL + V +K L + ++
Sbjct: 30 LGATASSLNQEPVETPSQAAHKSASLRQEPSGQGLGVALKSTPGILSGKLPESVSDVRFS 89
Query: 850 CPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPP 887
P+ T + PP
Sbjct: 90 SPQGQGESRTLTDSAGPRQITLRQFENGVTELQLSRPP 127
Score = 29.0 bits (63), Expect = 9.3
Identities = 9/91 (9%), Positives = 20/91 (21%), Gaps = 8/91 (8%)
Query: 429 SPTPTTTPAPICYPGSNDPRCPSPPPTTPR-----PTTQPPPVCYPGSPDPRCPRPPPSP 483
+ P TP+ + ++ + PS P+
Sbjct: 38 NQEPVETPSQAAHKSASLRQEPSGQGLGVALKSTPGILSGKLPESVSDVRFSSPQGQGES 97
Query: 484 TPTTPAPL---VCYPGSSDPRCPTRPPPPPP 511
T + + + + PP
Sbjct: 98 RTLTDSAGPRQITLRQFENGVTELQLSRPPL 128
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 32.1 bits (73), Expect = 0.92
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICY---PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC 449
+PP PP P + R TQ P+C P P + S D C
Sbjct: 54 QPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSED--C 111
Query: 450 P-----SPPPTTPRPTTQPPPV 466
P R + P PV
Sbjct: 112 LYLNIYVPTEDDIRDSGGPKPV 133
Score = 29.7 bits (67), Expect = 4.7
Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPR 389
+PP PP P + R TQ P+C D R P P T S D
Sbjct: 54 QPPEPPSPWSDIRNATQFAPVCPQNIIDGRLP-EVMLPVWFTNNLDVVSSYVQDQSED-- 110
Query: 390 CP-----TRPPPPPPPPTTPRP 406
C P+P
Sbjct: 111 CLYLNIYVPTEDDIRDSGGPKP 132
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 31.7 bits (72), Expect = 1.0
Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 301 CPRPPPSPTPTTTPAPICYPGSNDPRCPTRP--PPPPPPPTTPRPTTQPPPICYPGSPD 357
C + S T TT + + S T T P P YPG
Sbjct: 359 CLKDSSSHTSYTTTSTVTAAPSGYSA-TTMAADLATAFGLTASIPIPTIPTSFYPGLTP 416
Score = 31.3 bits (71), Expect = 1.4
Identities = 13/61 (21%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 360 CPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 419
C + S T TT +T P T P P YPG
Sbjct: 359 CLKDSSSHTSYTTTSTVTA---APSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
Query: 420 D 420
Sbjct: 416 P 416
Score = 30.1 bits (68), Expect = 3.0
Identities = 10/67 (14%), Positives = 15/67 (22%), Gaps = 9/67 (13%)
Query: 407 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPV 466
+ + P + TT A + + T P P
Sbjct: 359 CLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLA---------TAFGLTASIPIPTIPTS 409
Query: 467 CYPGSPD 473
YPG
Sbjct: 410 FYPGLTP 416
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 32.1 bits (72), Expect = 1.0
Identities = 47/279 (16%), Positives = 70/279 (25%), Gaps = 43/279 (15%)
Query: 597 PRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYP--GSPDPRCPRPPSPSPTPTCY 654
P + G + R Q P T G+ PR R T C+
Sbjct: 3 GSPIQVIENDRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIR-----CTTYCF 57
Query: 655 PGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGSTDP-RCPREEI 713
P + D + +P + + PF P L G + P RC R +
Sbjct: 58 PCTSDMAKQAQIP-------LAAVIKPF----ATIPSNESPLYLVNHGESGPVRCNRCKA 106
Query: 714 YPTQ-----------QIPSFCFPGSIDPRCPKPLRPSSTFQPETYLPPLPDSASEYSIKR 762
Y Q + P + L P L + EY
Sbjct: 107 YMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATL 166
Query: 763 DVGLNCHPGSNDPKCNEISIPPNNQKGGLLRTESSSLGKGEVHEALFQLNKELGLTDDKK 822
D P + I + +N K GL++ L L ++ KE
Sbjct: 167 DYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEEL-----KTMLEKIPKEEQEETSAI 221
Query: 823 EFA--------HFYRTPSPTTPAPPQCYPGSPDPRCPRP 853
HF+ S + P
Sbjct: 222 RVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLL 260
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 31.8 bits (71), Expect = 1.1
Identities = 11/71 (15%), Positives = 19/71 (26%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
+P + + PP SP P +T + P ++P +
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61
Query: 510 PPPPPTTPAPP 520
P P
Sbjct: 62 AVPTIHFKESP 72
Score = 30.7 bits (68), Expect = 2.3
Identities = 10/64 (15%), Positives = 16/64 (25%)
Query: 375 TPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT 434
+ PL + PT P + S P P S + ++
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 435 TPAP 438
P
Sbjct: 61 FAVP 64
Score = 29.5 bits (65), Expect = 4.7
Identities = 9/66 (13%), Positives = 15/66 (22%)
Query: 456 TPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPT 515
+ P + G P + P T S+ P P +
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 516 TPAPPV 521
P +
Sbjct: 61 FAVPTI 66
Score = 29.1 bits (64), Expect = 7.9
Identities = 8/62 (12%), Positives = 19/62 (30%)
Query: 830 TPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQC 889
+ +P + + G P + P +P + + PP +P +
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 890 YP 891
+
Sbjct: 61 FA 62
Score = 28.7 bits (63), Expect = 9.3
Identities = 12/92 (13%), Positives = 22/92 (23%)
Query: 429 SPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTP 488
S TP + G + SP PT + + P P + + ++
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 489 APLVCYPGSSDPRCPTRPPPPPPPPPTTPAPP 520
+ P + P
Sbjct: 61 FAVPTIHFKESPFYKIQRLIPELVMNVEVTGG 92
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 31.4 bits (70), Expect = 1.2
Identities = 12/80 (15%), Positives = 19/80 (23%)
Query: 383 PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
S T P P +P GS P + T + P+ P
Sbjct: 240 ERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTP 299
Query: 443 GSNDPRCPSPPPTTPRPTTQ 462
S + ++
Sbjct: 300 ASVEYHAGMKSLNKAPYSSN 319
Score = 31.4 bits (70), Expect = 1.3
Identities = 10/81 (12%), Positives = 19/81 (23%)
Query: 294 PGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYP 353
S P + + + P P T T P+ P
Sbjct: 240 ERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTP 299
Query: 354 GSPDPRCPRPPPSPTPTTTPT 374
S + + P ++ +
Sbjct: 300 ASVEYHAGMKSLNKAPYSSNS 320
Score = 31.1 bits (69), Expect = 1.7
Identities = 11/81 (13%), Positives = 23/81 (28%)
Query: 356 PDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 415
+ R + P + +P + + + P P T T P+
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298
Query: 416 PGSPDPRCPRPPPSPTPTTTP 436
P S + + P ++
Sbjct: 299 PASVEYHAGMKSLNKAPYSSN 319
Score = 30.7 bits (68), Expect = 1.9
Identities = 8/80 (10%), Positives = 13/80 (16%)
Query: 441 YPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDP 500
Y + + P + + P PT +
Sbjct: 237 YLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPV 296
Query: 501 RCPTRPPPPPPPPPTTPAPP 520
P AP
Sbjct: 297 STPASVEYHAGMKSLNKAPY 316
Score = 30.7 bits (68), Expect = 2.1
Identities = 5/77 (6%), Positives = 13/77 (16%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 361
T +++ T P + P T+
Sbjct: 242 SYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPAS 301
Query: 362 RPPPSPTPTTTPTTPAP 378
+ + +
Sbjct: 302 VEYHAGMKSLNKAPYSS 318
Score = 30.7 bits (68), Expect = 2.3
Identities = 8/80 (10%), Positives = 15/80 (18%)
Query: 352 YPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPP 411
RP + + + P + P + P
Sbjct: 241 RSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPA 300
Query: 412 PICYPGSPDPRCPRPPPSPT 431
+ Y P S +
Sbjct: 301 SVEYHAGMKSLNKAPYSSNS 320
Score = 29.5 bits (65), Expect = 4.6
Identities = 8/96 (8%), Positives = 16/96 (16%)
Query: 344 TTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTT 403
P T + +++ T P +
Sbjct: 221 FEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSA 280
Query: 404 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
P T+ + + AP
Sbjct: 281 PTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPY 316
Score = 29.1 bits (64), Expect = 7.4
Identities = 11/77 (14%), Positives = 18/77 (23%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
+ Q I P + T TT + P S R P +
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298
Query: 342 RPTTQPPPICYPGSPDP 358
+ + + P
Sbjct: 299 PASVEYHAGMKSLNKAP 315
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 31.9 bits (73), Expect = 1.3
Identities = 9/81 (11%), Positives = 14/81 (17%), Gaps = 8/81 (9%)
Query: 293 YPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICY 352
+ PR + + P P P
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQ-------- 58
Query: 353 PGSPDPRCPRPPPSPTPTTTP 373
P P + P T+
Sbjct: 59 PAEPSKLAKKLRAEPDMDTSF 79
Score = 31.1 bits (71), Expect = 2.0
Identities = 6/60 (10%), Positives = 10/60 (16%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
+ D +P+ P P P + P
Sbjct: 21 TAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAKKLRAEPDMDTSFV 80
Score = 30.7 bits (70), Expect = 2.4
Identities = 9/81 (11%), Positives = 15/81 (18%), Gaps = 7/81 (8%)
Query: 441 YPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDP 500
+ PR T + D +P+ P
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPL-------EQP 59
Query: 501 RCPTRPPPPPPPPPTTPAPPV 521
P++ P V
Sbjct: 60 AEPSKLAKKLRAEPDMDTSFV 80
Score = 29.9 bits (68), Expect = 4.6
Identities = 8/79 (10%), Positives = 12/79 (15%), Gaps = 6/79 (7%)
Query: 389 RCPTRPPPPPPPPTTPRPTTQPPPICYPG-SPDPRCPRPPPSPTPTTTPAPICYPGSNDP 447
P T + + P D +P+ P
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLE-----QPAE 61
Query: 448 RCPSPPPTTPRPTTQPPPV 466
P V
Sbjct: 62 PSKLAKKLRAEPDMDTSFV 80
Score = 29.9 bits (68), Expect = 4.8
Identities = 8/89 (8%), Positives = 13/89 (14%), Gaps = 16/89 (17%)
Query: 326 RCPTRPPPPPPPPTTPRPTTQPPPICYPG-SPDPRCPRPPPSPTPTTTPTTPAPLVCYPG 384
P T + + P D +P+ P
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPA------ 60
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
P P +
Sbjct: 61 ---------EPSKLAKKLRAEPDMDTSFV 80
Score = 29.5 bits (67), Expect = 5.6
Identities = 8/81 (9%), Positives = 12/81 (14%), Gaps = 8/81 (9%)
Query: 359 RCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 418
T + P P P P
Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQ--------PAE 61
Query: 419 PDPRCPRPPPSPTPTTTPAPI 439
P + P T+ +
Sbjct: 62 PSKLAKKLRAEPDMDTSFVGL 82
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 31.6 bits (71), Expect = 1.3
Identities = 16/83 (19%), Positives = 20/83 (24%), Gaps = 1/83 (1%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
+ T P R P P P PR + + + P C
Sbjct: 435 NVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSC- 493
Query: 425 RPPPSPTPTTTPAPICYPGSNDP 447
PP PT S D
Sbjct: 494 LPPEVPTQLPGQNMKGSRSSADS 516
Score = 29.3 bits (65), Expect = 7.6
Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 397 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTT 456
T R + +P R S TP +P P P N +
Sbjct: 435 NVESVCTHRE--RSEDAKKGPNPLMR----RNSVTPLASPEPTKKPRINSFEEHVASTSA 488
Query: 457 PRPTTQPP 464
P+ PP
Sbjct: 489 ALPSCLPP 496
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 31.2 bits (71), Expect = 1.6
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRC 531
PD R L + + R P + PPP P P+ V P
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRV-LKEKQAPLF 61
Query: 532 PRPTPTTPPPPQCYLGSPDPR 552
PP L + +
Sbjct: 62 VDTAVEGTLPPLSLLDPAEVK 82
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 31.4 bits (71), Expect = 1.9
Identities = 13/73 (17%), Positives = 18/73 (24%)
Query: 334 PPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTR 393
P PP + + G P P P P++ +P S PT
Sbjct: 774 PWPPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLPEYYEPMECPVIEHPFSKTLHNPTA 833
Query: 394 PPPPPPPPTTPRP 406
P
Sbjct: 834 LHFATEEKAVCDP 846
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 30.2 bits (67), Expect = 1.9
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 310 PTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQP-PPICYPGSPDPRCPRPPPSPT 368
P+ + + P P P ++P P+ P S D P
Sbjct: 6 PSMASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGP 65
Query: 369 PTTTP-TTPAPLVCYP 383
+ P + V P
Sbjct: 66 NHSEPLSAELASVICP 81
Score = 28.3 bits (62), Expect = 9.1
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPV 565
PPP P P +P + + + + + L S P +
Sbjct: 24 PPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAELASVICPSL 83
Query: 566 CYP 568
Y
Sbjct: 84 AYA 86
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 30.7 bits (68), Expect = 2.0
Identities = 9/86 (10%), Positives = 12/86 (13%)
Query: 343 PTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPT 402
PG + S PPP
Sbjct: 6 HHHHHSSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRV 65
Query: 403 TPRPTTQPPPICYPGSPDPRCPRPPP 428
+ + P P P
Sbjct: 66 DVDAAFRDAKGLHGHQPWVATPLPGQ 91
Score = 29.2 bits (64), Expect = 5.9
Identities = 8/79 (10%), Positives = 11/79 (13%)
Query: 459 PTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPA 518
P C + + PPP
Sbjct: 12 SGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAF 71
Query: 519 PPVCYPGSNDPRCPRPTPT 537
+ P P P
Sbjct: 72 RDAKGLHGHQPWVATPLPG 90
Score = 28.8 bits (63), Expect = 8.1
Identities = 13/101 (12%), Positives = 19/101 (18%), Gaps = 10/101 (9%)
Query: 406 PTTQPPPICYPGSPDPRCPRPPPSPTP----TTTPAPICYPGSNDPRCPSPPPTTPRPTT 461
P C + + Y P P
Sbjct: 12 SGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAF 71
Query: 462 QPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVC--YPGSSDP 500
+ + P P P T A + Y G+S
Sbjct: 72 RDAKGLHGHQP----WVATPLPGQTVRALFIGINYYGTSAA 108
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 31.0 bits (70), Expect = 2.1
Identities = 11/93 (11%), Positives = 14/93 (15%), Gaps = 4/93 (4%)
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPT----TTPAPICYP 442
C P + D R T T T P +
Sbjct: 73 GVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFG 132
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPR 475
P + D R
Sbjct: 133 SGEADCGLRPLFEKKSLEDKTERELLESYIDGR 165
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.8 bits (69), Expect = 2.2
Identities = 29/166 (17%), Positives = 46/166 (27%), Gaps = 32/166 (19%)
Query: 527 NDPRCPRPTPTTPPPPQCYLG-SPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEY 585
+ PRC P P++ P QC G + R + S C + P + TPE
Sbjct: 239 DIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHT--CQHW--SAQTPHTHNRTPEN 294
Query: 586 VCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRC-PRP 644
+ C R P + P C+ + R
Sbjct: 295 FPCKNLDENYC--------------------RNPDGKRA-----PWCHTTNSQVRWEYCK 329
Query: 645 PSPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTT 690
+ P P + P + G + + T + TT
Sbjct: 330 IPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQS-YRGTSSTTT 374
Score = 30.8 bits (69), Expect = 2.9
Identities = 45/238 (18%), Positives = 56/238 (23%), Gaps = 42/238 (17%)
Query: 498 SDPRCPTRPPPPPPPPPTTPAPPVCYPG---------------SNDPRCPRPTPTTPP-- 540
PRC T PP P Y G + P TP P
Sbjct: 239 DIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCK 298
Query: 541 --------------PPQCYLGSPDPRC-PRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEY 585
P C+ + R +PS S P P P +P +
Sbjct: 299 NLDENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSP-VSTEQLAPTAPPELTPVVQD 357
Query: 586 VCYPGSIDPRCPRPPPTTQETYVCYPGSIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPP 645
+ R TT C S P Q +P G C R P
Sbjct: 358 CYHGDGQSYRGTS--STTTTGKKCQSWS----SMTPHRHQKTPENYPNAGLTMNYC-RNP 410
Query: 646 SPSPTPTCYPGSPDPRCRPSVPPPTSQPFIPVGLTPFVCTCNVTTPRPIPPPLCYPGS 703
P C+ P R S V P V + C G+
Sbjct: 411 DADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVL--LPDVETPSEEDCMFGN 466
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 30.7 bits (69), Expect = 2.2
Identities = 20/85 (23%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPP---------------SPTPTTTPTTPA 377
P P T P P P + P P+ P + + P TP
Sbjct: 2 RAPAPATPHAPDHSPAPNSPTLTRPPEGPKFPRVKNWELGSITYDTLCAQSQQDGPCTPR 61
Query: 378 PLVCYPGSNDPRCPTRPPPPPPPPT 402
C PR P P PPP
Sbjct: 62 --RCLGSLVLPRKLQTRPSPGPPPA 84
Score = 29.5 bits (66), Expect = 4.9
Identities = 20/83 (24%), Positives = 23/83 (27%), Gaps = 18/83 (21%)
Query: 450 PSPPPTTPR-PTTQPPPVCYPGSPDPRCPRPPP-----------------SPTPTTPAPL 491
+P P TP P P P + P P+ P S P
Sbjct: 2 RAPAPATPHAPDHSPAPNSPTLTRPPEGPKFPRVKNWELGSITYDTLCAQSQQDGPCTPR 61
Query: 492 VCYPGSSDPRCPTRPPPPPPPPP 514
C PR P P PPP
Sbjct: 62 RCLGSLVLPRKLQTRPSPGPPPA 84
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 30.8 bits (70), Expect = 2.3
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 442
P + PP + + PP + + P P + P+
Sbjct: 530 PTVTSAGASLLPPEDNSQASPVPP------ADNSGAPTEPSAGDSEVAQMPVVIG 578
Score = 30.0 bits (68), Expect = 3.9
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 12/77 (15%)
Query: 256 NADLKFKNMNTKYY-----FWDD--GKGLKITTPRPTTQPPPICYPGSP-----DPRCPR 303
N + +M FW +T+ + PP SP + P
Sbjct: 502 NKQMDSNSMKLHLRTNYLQFWTQTYQALPTVTSAGASLLPPEDNSQASPVPPADNSGAPT 561
Query: 304 PPPSPTPTTTPAPICYP 320
P + P+
Sbjct: 562 EPSAGDSEVAQMPVVIG 578
Score = 29.3 bits (66), Expect = 7.7
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 336 PPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL 379
P T+ + PP SP P P+ + A +
Sbjct: 530 PTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQM 573
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.8 bits (67), Expect = 2.5
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRC 476
+CY S S CYPG P C
Sbjct: 116 LCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 29.4 bits (66), Expect = 3.4
Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 6/44 (13%)
Query: 317 ICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 360
+CY + CYPG P C
Sbjct: 116 LCY------TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 28.2 bits (63), Expect = 7.6
Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 6/44 (13%)
Query: 380 VCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRC 423
+CY + CYPG P C
Sbjct: 116 LCY------TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 30.7 bits (70), Expect = 2.5
Identities = 11/57 (19%), Positives = 12/57 (21%), Gaps = 11/57 (19%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICY-PGSPDPRCPRPPPSP----------TPTTTPAP 438
+ P PP T PIC P P P T
Sbjct: 40 KAPEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQSEDCLYVNVFAPDTPSQN 96
Score = 29.9 bits (68), Expect = 4.0
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICY-PGSPDPRCPRPPPSP 367
+ P PP T PIC P P
Sbjct: 40 KAPEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQ 78
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 30.5 bits (69), Expect = 2.7
Identities = 6/42 (14%), Positives = 8/42 (19%)
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
PS P P P+ P +
Sbjct: 4 DPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNL 45
Score = 30.1 bits (68), Expect = 3.5
Identities = 6/42 (14%), Positives = 8/42 (19%)
Query: 500 PRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
P+ P P N P+ P
Sbjct: 2 AMDPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDP 43
Score = 29.4 bits (66), Expect = 6.9
Identities = 8/46 (17%), Positives = 9/46 (19%), Gaps = 5/46 (10%)
Query: 843 PGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
P RP S P S R P+
Sbjct: 2 AMDPSEALQRPVASDFEPQGL-----SEAARWNSKENLLAGPSEND 42
Score = 29.0 bits (65), Expect = 7.9
Identities = 5/41 (12%), Positives = 8/41 (19%), Gaps = 3/41 (7%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P + P G ++ P
Sbjct: 2 AMDPSEALQRPVASDFEP---QGLSEAARWNSKENLLAGPS 39
Score = 29.0 bits (65), Expect = 8.8
Identities = 4/43 (9%), Positives = 8/43 (18%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPT 344
P + G ++ P+ P
Sbjct: 2 AMDPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPN 44
Score = 28.6 bits (64), Expect = 9.8
Identities = 9/53 (16%), Positives = 11/53 (20%), Gaps = 7/53 (13%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
P RP S S R ++ P P V
Sbjct: 2 AMDPSEALQRPVASDFEPQ-------GLSEAARWNSKENLLAGPSENDPNLFV 47
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 30.8 bits (70), Expect = 2.7
Identities = 9/72 (12%), Positives = 15/72 (20%), Gaps = 9/72 (12%)
Query: 471 SPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPR 530
P+ + + ++ Y G+ P P P
Sbjct: 261 QPNKGRNGLAGTFANGVNSAILRYAGA---------ANADPTTSANPNPAQLNEADLHAL 311
Query: 531 CPRPTPTTPPPP 542
P P P
Sbjct: 312 IDPAAPGIPTPG 323
Score = 29.2 bits (66), Expect = 6.4
Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 10/76 (13%)
Query: 296 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGS 355
P+ + A + Y G+ P T+ P +
Sbjct: 261 QPNKGRNGLAGTFANGVNSAILRYAGA----------ANADPTTSANPNPAQLNEADLHA 310
Query: 356 PDPRCPRPPPSPTPTT 371
P+P
Sbjct: 311 LIDPAAPGIPTPGAAD 326
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 30.2 bits (68), Expect = 2.7
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 318 CYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPA 377
+P DP P P P P P+P+ +P +PR P PSP+P TP
Sbjct: 291 TFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNT---SLEREPR-PNSSPSPSPGQASETPH 346
Query: 378 P 378
P
Sbjct: 347 P 347
Score = 29.5 bits (66), Expect = 6.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPP 465
GSPDP P P P P P+ P PSP P T P P
Sbjct: 302 GSPDPE-PSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASETPHPRP 349
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 30.3 bits (68), Expect = 2.7
Identities = 12/88 (13%), Positives = 18/88 (20%), Gaps = 6/88 (6%)
Query: 291 ICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 350
I + G P P P+ S + + P PP + +
Sbjct: 279 IWFQGDPGPLAPKGRKSRKKKSKATQLS------PEDRVEDALPPSKAPSRTRRAKRDLP 332
Query: 351 CYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
G P P
Sbjct: 333 KRKGRQAASGHCRPRKVKADIPSLEPEG 360
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease,
homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus
musculus} PDB: 3u6f_B*
Length = 314
Score = 30.1 bits (67), Expect = 2.8
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 261 FKNMNTKYYFWDDGKGLKITTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYP 320
+ W D +T +P P + RP + T P
Sbjct: 208 CQWKPQALLQWVDEHARPFSTVKPMYGTP-----ATTGTTNLRPHAATATTPLATANGSP 262
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPP 348
+ R P PPP P + P
Sbjct: 263 SNGRSRRPKSPPPEKVPEAPSQEGLLAP 290
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 29.7 bits (67), Expect = 2.8
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 842 YPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPR 873
YPG P P +PG
Sbjct: 3 YPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDP 34
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 30.4 bits (68), Expect = 2.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSS 560
PR P+P P P L SP R P P +
Sbjct: 459 PRNPKPLPRFPKKYSYPLKSPGVRPSNPRPGT 490
Score = 29.3 bits (65), Expect = 7.4
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 447 PRCPSPPPTTPRPTTQP--PPVCYPGSPDP 474
PR P P P P+ + P P P +P P
Sbjct: 459 PRNPKPLPRFPKKYSYPLKSPGVRPSNPRP 488
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 30.2 bits (67), Expect = 3.5
Identities = 13/73 (17%), Positives = 18/73 (24%)
Query: 367 PTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRP 426
P T T L +++ P P P + P
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 427 PPSPTPTTTPAPI 439
P+P PAP
Sbjct: 366 EPAPVEEVAPAPA 378
Score = 29.1 bits (64), Expect = 7.2
Identities = 13/76 (17%), Positives = 16/76 (21%), Gaps = 1/76 (1%)
Query: 297 PDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 356
P P + PA P + P P P P P
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPE-APAQEVPAAEAVPAAAEPGAAEAAGS 364
Query: 357 DPRCPRPPPSPTPTTT 372
P +P P
Sbjct: 365 VEPAPVEEVAPAPAAQ 380
Score = 28.7 bits (63), Expect = 8.4
Identities = 10/88 (11%), Positives = 14/88 (15%)
Query: 351 CYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQP 410
C+ P P T + P +
Sbjct: 288 CHQAVNKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAA 347
Query: 411 PPICYPGSPDPRCPRPPPSPTPTTTPAP 438
+ P P P AP
Sbjct: 348 EAVPAAAEPGAAEAAGSVEPAPVEEVAP 375
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 30.2 bits (68), Expect = 3.7
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 318 CYPGSNDPRCPTRPPPPPPPPTTPRPTTQ-----PPPICYPGSPDPRCPRPPPSPTPTTT 372
+ + C + P T+ + PP P +P+P C R S T +
Sbjct: 716 QHKATKGKECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTPNP-CVRKDQSGTHIVS 774
Query: 373 PTTPA 377
A
Sbjct: 775 VEDVA 779
Score = 29.1 bits (65), Expect = 8.1
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 381 CYPGSNDPRCPTRPPPPPPPPTTPRPTTQ-----PPPICYPGSPDPRCPRPPPSPTPTTT 435
+ + C + P T+ + PP P +P+P C R S T +
Sbjct: 716 QHKATKGKECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTPNP-CVRKDQSGTHIVS 774
Query: 436 PAPICY 441
+
Sbjct: 775 VEDVAE 780
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate
metabolism, kinase, membrane, nucleotide-binding,
nucleus; 2.60A {Saccharomyces cerevisiae} SCOP:
b.1.18.21 d.353.1.1
Length = 252
Score = 29.6 bits (65), Expect = 3.8
Identities = 18/132 (13%), Positives = 26/132 (19%), Gaps = 11/132 (8%)
Query: 385 SNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGS 444
+ PP + + P G P P TT P +
Sbjct: 97 IRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDP 156
Query: 445 NDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPT 504
+ + + D PP P L Y + D
Sbjct: 157 SVMERYYYTLDRQQS-----------NTDTSWLTPPQLPPQLENVILNKYYATQDQFNEN 205
Query: 505 RPPPPPPPPPTT 516
P P
Sbjct: 206 NSGALPIPNHVV 217
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex,
hydrolase/protein binding complex; HET: PHE; 2.70A
{Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A*
1fb1_A
Length = 230
Score = 29.6 bits (67), Expect = 3.8
Identities = 7/45 (15%), Positives = 11/45 (24%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTT 375
P P P RP + P G+ + +
Sbjct: 3 PERELPRPGASRPAEKSRPPEAKGAQPADAWKAGRPRSEEDNELN 47
Score = 29.6 bits (67), Expect = 3.8
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 394 PPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
P P P RP + P G+ + +
Sbjct: 3 PERELPRPGASRPAEKSRPPEAKGAQPADAWKAGRPRSEEDNE 45
Score = 28.5 bits (64), Expect = 8.1
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 417 GSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQP 463
G P+ PRP S + P P+ RP ++
Sbjct: 1 GFPERELPRPGASRPAEKSR-----PPEAKGAQPADAWKAGRPRSEE 42
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 29.4 bits (65), Expect = 3.9
Identities = 10/101 (9%), Positives = 18/101 (17%), Gaps = 3/101 (2%)
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
D P+ P G R + +P P
Sbjct: 90 DRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRP---ALVRS 146
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTT 487
+ + + P S P + +
Sbjct: 147 ASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAM 187
Score = 29.4 bits (65), Expect = 4.2
Identities = 13/97 (13%), Positives = 18/97 (18%)
Query: 282 PRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTP 341
R T + C P P P + P P +
Sbjct: 90 DRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASS 149
Query: 342 RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAP 378
+ + P D P S P
Sbjct: 150 DTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLA 186
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 30.1 bits (67), Expect = 4.0
Identities = 15/123 (12%), Positives = 22/123 (17%), Gaps = 4/123 (3%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTT----PAPICYPGSNDPRCPS 451
P + C + P P P C + +
Sbjct: 217 PETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVED 276
Query: 452 PPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPP 511
+ P P P P + + DP PP
Sbjct: 277 ACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSA 336
Query: 512 PPP 514
P
Sbjct: 337 PHY 339
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 29.7 bits (66), Expect = 4.0
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 447 PRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRP 506
+ S R TTQ + G P + P +PG+ P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPP-GGSSRAAFPQGGRGRGRFPGAV-PGGDRFP 206
Query: 507 PPPPPPPPTTPAPPVCYP 524
P P P P P
Sbjct: 207 GPAGPGGPPPPFPAGQTH 224
Score = 28.9 bits (64), Expect = 6.6
Identities = 16/84 (19%), Positives = 19/84 (22%), Gaps = 5/84 (5%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
P R TTQ PP + P +PG+
Sbjct: 146 PVNKQFLSQFEMQSRKTTQSGQ-----MSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVP 200
Query: 388 PRCPTRPPPPPPPPTTPRPTTQPP 411
P P P P P Q
Sbjct: 201 GGDRFPGPAGPGGPPPPFPAGQTH 224
Score = 28.5 bits (63), Expect = 7.7
Identities = 13/63 (20%), Positives = 14/63 (22%)
Query: 829 RTPSPTTPAPPQCYPGSPDPRCPRPPPSPTTPAPPQCYPGSPDPRCPRPPLSPTTPAPPQ 888
T S + P R P P PG P P P P P
Sbjct: 162 TTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAG 221
Query: 889 CYP 891
Sbjct: 222 QTH 224
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 29.9 bits (68), Expect = 4.1
Identities = 3/53 (5%), Positives = 5/53 (9%)
Query: 328 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
T+ + P V
Sbjct: 83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSV 135
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 29.9 bits (68), Expect = 4.2
Identities = 11/56 (19%), Positives = 14/56 (25%), Gaps = 11/56 (19%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT----------TPAP 438
PP PP R T P+ DP + +PA
Sbjct: 40 LPPEPPDAWDGVREATSFGPVV-MQPSDPIFSGLLGRMSEAPSEDGLYLNIWSPAA 94
Score = 29.6 bits (67), Expect = 4.8
Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTT 371
PP PP R T P+ DP +
Sbjct: 40 LPPEPPDAWDGVREATSFGPVV-MQPSDPIFSGLLGRMSEAP 80
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 29.7 bits (67), Expect = 4.5
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 619 PRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSVPPPTSQ 672
PP P P P P P P P PP+ P P P + + +
Sbjct: 6 QGQSPPVPFPAPAPPPQPPTPALPHPPA-QPPPPPPQQFPQFHVKSGLQIKKNA 58
Score = 29.3 bits (66), Expect = 6.5
Identities = 12/42 (28%), Positives = 13/42 (30%)
Query: 480 PPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
+P P P P PP PPPPP P
Sbjct: 5 SQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQF 46
Score = 29.3 bits (66), Expect = 6.7
Identities = 14/49 (28%), Positives = 16/49 (32%)
Query: 391 PTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPI 439
P P P PPP P P PP P P + P+ I
Sbjct: 11 PVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAI 59
Score = 29.3 bits (66), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAP 490
P P P PP P P P P PP P P P
Sbjct: 6 QGQSPPVPFPAPAPP----PQPPTPALPHPPAQPPPPPPQQ 42
Score = 28.9 bits (65), Expect = 7.7
Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
P P P PP P P P P PP P P P V
Sbjct: 5 SQGQSPPVPFPAPAPP----PQPPTPALPHPPAQPPPPPPQQFPQFHV 48
Score = 28.9 bits (65), Expect = 8.6
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 497 SSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPP 542
+S + P P P P PPP P P + + P P P P P
Sbjct: 4 NSQGQSPPVPFPAPAPPPQPPTPAL----PHPPAQPPPPPPQQFPQ 45
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 29.1 bits (65), Expect = 4.6
Identities = 10/69 (14%), Positives = 13/69 (18%)
Query: 469 PGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSND 528
P P+ C P PAP S+ P +
Sbjct: 11 PYEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEY 70
Query: 529 PRCPRPTPT 537
R
Sbjct: 71 ELEKRVERL 79
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 28.8 bits (64), Expect = 4.8
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 328 PTRPPPPPPPPTTPRPTTQPP-PICYPGSPDPRCPRPPPSPTPT 370
+ PPPPP PPT P SP P PSP PT
Sbjct: 2 SSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPT 45
Score = 28.8 bits (64), Expect = 4.8
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 391 PTRPPPPPPPPTTPRPTTQPP-PICYPGSPDPRCPRPPPSPTPT 433
+ PPPPP PPT P SP P PSP PT
Sbjct: 2 SSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPT 45
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.8 bits (66), Expect = 5.2
Identities = 21/195 (10%), Positives = 33/195 (16%), Gaps = 6/195 (3%)
Query: 409 QPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCY 468
+ T C + + T P +C
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK 197
Query: 469 PGSPDPRCPRPPPSPTPTTPAP------LVCYPGSSDPRCPTRPPPPPPPPPTTPAPPVC 522
P + C D RC PPP
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 523 YPGSNDPRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSSPSPPVCYPGSPDPRCPRPPSPT 582
+ +C + P CP + S +C P
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEG 317
Query: 583 PEYVCYPGSIDPRCP 597
+ + S
Sbjct: 318 EKTIDSVTSAQELRG 332
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 29.7 bits (67), Expect = 5.2
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 503 PTRPPPPPPPPPTTPAPPVCYP 524
+ P P P T AP +
Sbjct: 371 ASCTAPAQPIEPITAAPGSHHH 392
Score = 29.3 bits (66), Expect = 6.9
Identities = 5/27 (18%), Positives = 6/27 (22%)
Query: 323 NDPRCPTRPPPPPPPPTTPRPTTQPPP 349
P P P T P +
Sbjct: 367 GLQSASCTAPAQPIEPITAAPGSHHHH 393
Score = 29.3 bits (66), Expect = 6.9
Identities = 5/27 (18%), Positives = 6/27 (22%)
Query: 386 NDPRCPTRPPPPPPPPTTPRPTTQPPP 412
P P P T P +
Sbjct: 367 GLQSASCTAPAQPIEPITAAPGSHHHH 393
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 29.7 bits (67), Expect = 5.4
Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 15/74 (20%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRC--- 449
PP P P + T +C + T S D C
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVC------YQYVDTLYPGFEGTEMWNPNRELSED--CLYL 99
Query: 450 ----PSPPPTTPRP 459
P P P +P P
Sbjct: 100 NVWTPYPRPASPTP 113
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 29.8 bits (66), Expect = 5.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 447 PRCPSPPPTTPRPTTQP--PPVCYPGSPDP 474
PR P P P P+ + P P P +P P
Sbjct: 1018 PRNPKPLPRFPKKYSYPLKSPGVRPSNPRP 1047
Score = 29.8 bits (66), Expect = 6.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 529 PRCPRPTPTTPPPPQCYLGSPDPRCPRPLPSS 560
PR P+P P P L SP R P P +
Sbjct: 1018 PRNPKPLPRFPKKYSYPLKSPGVRPSNPRPGT 1049
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
antibiotics design, transferase, hydrolase; HET: M0E;
2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Length = 751
Score = 29.6 bits (67), Expect = 5.7
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 418 SPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDP 474
+P P PP + Y G + C P T+ P +C
Sbjct: 698 TPTPLNLVPPED----IADMGVDYDG--NFVCSGGMRILPVWTSDPQSLCQQSEMQQ 748
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 29.4 bits (66), Expect = 5.8
Identities = 13/79 (16%), Positives = 18/79 (22%), Gaps = 7/79 (8%)
Query: 309 TPTTTPAPICY-PGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP---RPP 364
+P T + + R P P +P + PP
Sbjct: 355 SPRTAYEVVELDTVTGRARTIGARHTDPVDP---AYYPEPQIRTFTAPDGREIHAHIYPP 411
Query: 365 PSPTPTTTPTTPAPLVCYP 383
SP T P V
Sbjct: 412 HSPDFTGPADELPPYVVMA 430
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 29.2 bits (65), Expect = 6.1
Identities = 12/54 (22%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 455 TTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPR----CPT 504
P PPP+ G AP +DP CPT
Sbjct: 25 EAPSLRPAPPPISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLCPT 78
Score = 28.9 bits (64), Expect = 7.9
Identities = 16/75 (21%), Positives = 18/75 (24%), Gaps = 10/75 (13%)
Query: 354 GSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPI 413
G R RP PAP G R P T + + P
Sbjct: 9 GFFSARGHRPLDKKREEAPSLRPAPPPISGGG------YRARPAKAAATQKKVERKAPDA 62
Query: 414 CYPGSPDPR----CP 424
DP CP
Sbjct: 63 GGCLHADPDLGVLCP 77
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding
site, glycosylation, ultrahigh resolution, calcium; HET:
NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB:
1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A*
1mn2_A*
Length = 357
Score = 29.1 bits (65), Expect = 6.3
Identities = 15/64 (23%), Positives = 16/64 (25%), Gaps = 6/64 (9%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPR 422
P P P PA G D P T P + C GS
Sbjct: 294 PVPKPATGQPAMFPAST----GPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMS-- 347
Query: 423 CPRP 426
CP
Sbjct: 348 CPGV 351
Score = 29.1 bits (65), Expect = 7.9
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 450 PSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPP 509
P P P T +P P P + CP T P ++
Sbjct: 294 PVPKPATGQPAMFPASTG-PQDLELSCPSERFPTLTTQPG-------------ASQSLIA 339
Query: 510 PPPPPTTPAPPVCYPG 525
P + P V + G
Sbjct: 340 HCPDGSMSCPGVQFNG 355
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 29.1 bits (66), Expect = 7.4
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 2/32 (6%)
Query: 302 PRPPPSPTPTTTPAPICYPGSNDPRCPTRPPP 333
P + T+ P YP +
Sbjct: 12 SGLVPRGSHMTSAEPRAYP--FNDVHGLTLAG 41
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 29.0 bits (65), Expect = 7.5
Identities = 19/111 (17%), Positives = 23/111 (20%), Gaps = 8/111 (7%)
Query: 505 RPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQC---YLGSPDPRCPRPLPSSP 561
PP + PRC T C + P
Sbjct: 11 NASEYIPPGYEIVTKAPLGALTALPRCG--TGADQGKKVCIVYHRCDGVTNTVTPEEVIN 68
Query: 562 SPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPG 612
+ G D R + VC P P PT V P
Sbjct: 69 TTGE---GIFDIRENANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPS 116
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 28.2 bits (63), Expect = 8.0
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 439 ICYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRC 476
+CY S P S C G P+C
Sbjct: 116 LCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 28.8 bits (65), Expect = 8.8
Identities = 9/56 (16%), Positives = 12/56 (21%), Gaps = 2/56 (3%)
Query: 331 PPPPPPPPTTPRPTTQPPPICYPGSPD--PRCPRPPPSPTPTTTPTTPAPLVCYPG 384
PP P T + S + P P A + G
Sbjct: 170 PPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGG 225
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 28.7 bits (65), Expect = 8.8
Identities = 4/43 (9%), Positives = 5/43 (11%)
Query: 333 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTT 375
P + SPD
Sbjct: 10 LVPRGSGMKETAAAKFERNHMDSPDLGTDDDDKMVAGVVMMAN 52
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes
cervina}
Length = 338
Score = 28.7 bits (64), Expect = 8.9
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 301 CPRPPPSPTPTTTPAPICYPGSNDPR-----CPTRPPPPPPPPTTPRPTTQPPPI 350
C P+P P C P P P T+P P P+
Sbjct: 284 CSDVIPTPPLAKVAQVGSLPPGKSMADVQVACTNGMPFPSLP-TSPGPVQTVAPV 337
>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET:
GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1
c.47.1.5
Length = 249
Score = 28.6 bits (64), Expect = 9.3
Identities = 10/43 (23%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 500 PRCPTRPPPPPP-PPPTTPAPPVCYPGSNDPRCPRPTPTTPPP 541
P PP PPP A G P P
Sbjct: 8 PPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY 50
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 28.9 bits (64), Expect = 9.3
Identities = 19/174 (10%), Positives = 34/174 (19%), Gaps = 14/174 (8%)
Query: 493 CYPGSSDPRCPTRPPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQCYLGSPDPR 552
CY +S C +C + C P +
Sbjct: 256 CYGHAS--ECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSN 313
Query: 553 CPRPLPSSPSPPVCYPGSPDPRCPRPPSPTPEYVCYPGSIDPRCPRPPPTTQETYVCYPG 612
+ + C+ S C ++ C + C P
Sbjct: 314 ACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQ----------CKPF 363
Query: 613 SIDPRCPRPQPPQPSPTPLCYPGSPDPRCPRPPSPSPTPTCYPGSPDPRCRPSV 666
+ P P+ C + + RC+ V
Sbjct: 364 YF--QHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHV 415
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 28.8 bits (65), Expect = 9.3
Identities = 12/71 (16%), Positives = 14/71 (19%), Gaps = 6/71 (8%)
Query: 365 PSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
TP L Y + P PPP TP +
Sbjct: 282 TRARHPNTPPGLTLLN-YLPN-----SVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMG 335
Query: 425 RPPPSPTPTTT 435
P P
Sbjct: 336 SPKPPVKFNRR 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.139 0.478
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,317,741
Number of extensions: 1039735
Number of successful extensions: 18357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11785
Number of HSP's successfully gapped: 1750
Length of query: 904
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 802
Effective length of database: 3,853,851
Effective search space: 3090788502
Effective search space used: 3090788502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.8 bits)