RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15615
(904 letters)
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 32.0 bits (71), Expect = 0.31
Identities = 9/58 (15%), Positives = 14/58 (24%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSND 387
+ P P + T P C +P+ + P S D
Sbjct: 39 KDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGKTALDLVMQSKVFQAVLPQSED 96
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 31.2 bits (70), Expect = 0.56
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 472 PDPRCPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPPPPPPPPTTPAPPV 521
P P P P + Y + R P P PPV
Sbjct: 332 PVSDMPVVPGKDNTDGKKPNIWYSLNGK----IRAVNVPKVTKEKPTPPV 377
>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
[TaxId: 38902]}
Length = 574
Score = 30.6 bits (68), Expect = 1.1
Identities = 11/74 (14%), Positives = 15/74 (20%)
Query: 443 GSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCPRPPPSPTPTTPAPLVCYPGSSDPRC 502
S + P+P P V P P+ P P +
Sbjct: 176 ASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQSE 235
Query: 503 PTRPPPPPPPPPTT 516
PP
Sbjct: 236 HFLADPPGLRSNAD 249
Score = 29.0 bits (64), Expect = 2.9
Identities = 11/82 (13%), Positives = 12/82 (14%), Gaps = 10/82 (12%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLV 380
S + PT T P P P P P
Sbjct: 176 ASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNNPNGP----------KMPFRQYHAPFYGK 225
Query: 381 CYPGSNDPRCPTRPPPPPPPPT 402
PP
Sbjct: 226 TTKRFATQSEHFLADPPGLRSN 247
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 30.5 bits (67), Expect = 1.2
Identities = 15/98 (15%), Positives = 18/98 (18%), Gaps = 3/98 (3%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPL---VCYPGSN 386
R P P P T C + T + L V P
Sbjct: 43 RKPVPAEPWHGVLDATGLSATCVQERYEYFPGFSGEEIWNPNTNVSEDCLYINVWAPAKA 102
Query: 387 DPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPDPRCP 424
R P T P + P
Sbjct: 103 RLRHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGLP 140
Score = 28.6 bits (62), Expect = 3.8
Identities = 15/98 (15%), Positives = 17/98 (17%), Gaps = 13/98 (13%)
Query: 393 RPPPPPPPPTTPRPTTQPPPIC----YPGSPDPRCPRPPPSPTPTT---------TPAPI 439
R P P P T C Y P T + PA
Sbjct: 43 RKPVPAEPWHGVLDATGLSATCVQERYEYFPGFSGEEIWNPNTNVSEDCLYINVWAPAKA 102
Query: 440 CYPGSNDPRCPSPPPTTPRPTTQPPPVCYPGSPDPRCP 477
P T P + P
Sbjct: 103 RLRHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGLP 140
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 30.0 bits (67), Expect = 1.5
Identities = 13/61 (21%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 360 CPRPPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSP 419
C + S T TT +T P T P P YPG
Sbjct: 359 CLKDSSSHTSYTTTSTVTAA---PSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
Query: 420 D 420
Sbjct: 416 P 416
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/49 (24%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 309 TPTTTPAPICYPGSNDPRCPTRPPPPPPPPTTPRPTTQPPPICYPGSPD 357
T T T AP Y + T P P YPG
Sbjct: 372 TSTVTAAPSGYSATT----MAADLATAFGLTASIPIPTIPTSFYPGLTP 416
Score = 28.1 bits (62), Expect = 6.1
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 431 TPTTTPAPICYPGSNDPRCPSP--PPTTPRPTTQPPPVCYPGSPD 473
T T T AP Y + + T P P YPG
Sbjct: 372 TSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLTP 416
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 28.6 bits (64), Expect = 1.7
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 495 PGSSDPRCPTRPPPPPPPPPTTPAPPV 521
G+ P P P T AP +
Sbjct: 21 GGAQAPATTGAAGTAPTAPQPTAAPSI 47
Score = 27.4 bits (61), Expect = 3.8
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 12/39 (30%)
Query: 363 PPPSPTPTTTPTTPAPLVCYPGSNDPRCPTRPPPPPPPP 401
P + P TT PT P P P
Sbjct: 20 PGGAQAPATTGAAGTA------------PTAPQPTAAPS 46
Score = 26.7 bits (59), Expect = 7.0
Identities = 6/29 (20%), Positives = 7/29 (24%)
Query: 321 GSNDPRCPTRPPPPPPPPTTPRPTTQPPP 349
G + P P T P P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQP 41
Score = 26.7 bits (59), Expect = 7.0
Identities = 6/29 (20%), Positives = 7/29 (24%)
Query: 384 GSNDPRCPTRPPPPPPPPTTPRPTTQPPP 412
G + P P T P P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQP 41
Score = 26.3 bits (58), Expect = 9.0
Identities = 8/38 (21%), Positives = 8/38 (21%), Gaps = 11/38 (28%)
Query: 506 PPPPPPPPPTTPAPPVCYPGSNDPRCPRPTPTTPPPPQ 543
P P TT A PT P
Sbjct: 19 SPGGAQAPATTGAAG-----------TAPTAPQPTAAP 45
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 29.2 bits (65), Expect = 2.8
Identities = 10/79 (12%), Positives = 17/79 (21%), Gaps = 15/79 (18%)
Query: 396 PPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSPPPT 455
R T P + + P PA + + DPR
Sbjct: 8 DVEERVHVMRKTKLAPTVAHGVFN------------PEFGPAAL---SNKDPRLNEGVVL 52
Query: 456 TPRPTTQPPPVCYPGSPDP 474
++ + D
Sbjct: 53 DEVIFSKHKGDTKMSAEDK 71
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 28.9 bits (63), Expect = 2.9
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSND 446
PP P P + + T PP+C S T I S D
Sbjct: 46 TPPQPAEPWSFVKNATSYPPMC----TQDPKAGQLLSELFTNRKENIPLKLSED 95
Score = 27.8 bits (60), Expect = 7.4
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTT 375
PP P P + + T PP+C + + P
Sbjct: 46 TPPQPAEPWSFVKNATSYPPMCTQDPKAGQLLSELFTNRKENIPLK 91
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator
FlhC {Escherichia coli [TaxId: 562]}
Length = 156
Score = 28.2 bits (63), Expect = 2.9
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 15 AQAVIALKARDRPVAPLVNQASEIHVHYFHQINFERTCALHPKGQFPTKANFLLKPTSEL 74
A +I L AR + + + + + ++ PKG P ++ + +
Sbjct: 12 AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPP----PKGMLPFSTDWFMTWEQNV 67
Query: 75 QS 76
+
Sbjct: 68 HA 69
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 28.6 bits (62), Expect = 3.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDP 358
R P PP T + T+ PIC +
Sbjct: 43 RAPQDPPANQTLQSATEYGPICIGLDEEE 71
Score = 28.6 bits (62), Expect = 3.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDP 421
R P PP T + T+ PIC +
Sbjct: 43 RAPQDPPANQTLQSATEYGPICIGLDEEE 71
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 28.6 bits (62), Expect = 3.7
Identities = 6/59 (10%), Positives = 9/59 (15%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTTPAPLVCYPGSNDP 388
+ P P P C P + Y +
Sbjct: 40 KHPQPFTGSYQGLKANDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGT 98
Score = 28.2 bits (61), Expect = 6.0
Identities = 6/61 (9%), Positives = 9/61 (14%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPSP 452
+ P P P C P + D +
Sbjct: 40 KHPQPFTGSYQGLKANDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTV 99
Query: 453 P 453
Sbjct: 100 S 100
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 27.8 bits (60), Expect = 6.9
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 330 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPTT 375
R P P P + + P C D + P S
Sbjct: 43 RRPEPKKPWSGVWNASTYPNNC-QQYVDEQFPGFSGSEMWNPNREM 87
Score = 27.4 bits (59), Expect = 9.4
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 393 RPPPPPPPPTTPRPTTQPPPICYPGSPDPRCPRPPPSPTPTTTP 436
R P P P + + P C D + P S
Sbjct: 43 RRPEPKKPWSGVWNASTYPNNC-QQYVDEQFPGFSGSEMWNPNR 85
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 27.7 bits (61), Expect = 7.1
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 395 PPPPPPPTTP--RPTTQPPPICYPGSPDPRCPRPPPSPTPTTTPAPICYPGSNDPRCPS 451
P P P P P + P P R P P + + C GS CP
Sbjct: 294 PVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMS--CPG 350
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 27.7 bits (61), Expect = 7.1
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 476 CPRPPPSPTPTTPAPLVCYPGSSDPRCPTRPPP--PPPPPPTTPAPPV 521
+P P P + P + C P P P P T +
Sbjct: 291 LSKPIPGNGPFSFFPPGKSHSDIEQACAETPFPSLVTLPGPATSVARI 338
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.139 0.478
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,962,434
Number of extensions: 236757
Number of successful extensions: 1413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1202
Number of HSP's successfully gapped: 134
Length of query: 904
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 810
Effective length of database: 1,116,976
Effective search space: 904750560
Effective search space used: 904750560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)