BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1562
(620 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4MYI5|BOP1_DROWI Ribosome biogenesis protein BOP1 homolog OS=Drosophila willistoni
GN=GK22227 PE=3 SV=1
Length = 778
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT +QM +
Sbjct: 264 SFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQQKRGPKFYMLWETDTGREQMRRIHD 323
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYDDT-THQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D+ T Q + + +PH
Sbjct: 324 PVSAPKRDLPGHAESYNPPPEYLFDEKETKQWLKLKDEPHKR 365
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 223 KVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQN--LANRGHEIGVET------ISLQDGL 274
+V S R NPNG P + F I ++ ++IQ + R H+I V T I+ D
Sbjct: 200 EVNSIVRVNPNGKPSETRFKILEKFEQATLIQASPITGRTHQIRVHTQYTGHPIAWDDRY 259
Query: 275 QDKGYEEWVGEMIGMREILHHFANI 299
D+ ++ + G++ G+ + H ANI
Sbjct: 260 GDRRFDAYTGQL-GLDRLFLHAANI 283
>sp|B4GIU9|BOP1_DROPE Ribosome biogenesis protein BOP1 homolog OS=Drosophila persimilis
GN=GL17224 PE=3 SV=1
Length = 785
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 47 NRPPEYYY---DDTTHQQMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLP 103
R P++Y DT+ +QM + P S D+ H +YN PPEY +D+ ++ L
Sbjct: 308 KRGPKFYMLWETDTSREQMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDEKEAKEWHKLK 367
Query: 104 -QPH 106
+PH
Sbjct: 368 DEPH 371
>sp|Q28XF0|BOP1_DROPS Ribosome biogenesis protein BOP1 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA18610 PE=3 SV=1
Length = 786
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 47 NRPPEYYY---DDTTHQQMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLP 103
R P++Y DT+ +QM + P S D+ H +YN PPEY +D+ ++ L
Sbjct: 309 KRGPKFYMLWETDTSREQMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDEKEAKEWHKLK 368
Query: 104 -QPH 106
+PH
Sbjct: 369 DEPH 372
>sp|B3MHX6|BOP1_DROAN Ribosome biogenesis protein BOP1 homolog OS=Drosophila ananassae
GN=GF11675 PE=3 SV=1
Length = 793
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT+ + M +
Sbjct: 280 SFLPSVSEKKRVGRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRRIHD 339
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYDD-TTHQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D+ T + + + +PH
Sbjct: 340 PVSAPKRDLPGHAESYNPPPEYLFDERETKEWLKLKDEPHKR 381
>sp|B3NLK7|BOP1_DROER Ribosome biogenesis protein BOP1 homolog OS=Drosophila erecta
GN=GG21824 PE=3 SV=1
Length = 784
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 18 SFVPAY-------QHVAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ + V ++ + + + R P++Y DT+ + M +
Sbjct: 271 SFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRRIHD 330
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYD-DTTHQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D T + + + +PH
Sbjct: 331 PVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKR 372
>sp|Q7K0Y1|BOP1_DROME Ribosome biogenesis protein BOP1 homolog OS=Drosophila melanogaster
GN=CG5033 PE=2 SV=1
Length = 784
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT+ + M +
Sbjct: 271 SFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRRIHD 330
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYD-DTTHQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D T + + + +PH
Sbjct: 331 PVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKR 372
>sp|B4HN85|BOP1_DROSE Ribosome biogenesis protein BOP1 homolog OS=Drosophila sechellia
GN=GM21825 PE=3 SV=1
Length = 784
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT+ + M +
Sbjct: 271 SFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRRIHD 330
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYD-DTTHQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D T + + + +PH
Sbjct: 331 PVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKR 372
>sp|B4P528|BOP1_DROYA Ribosome biogenesis protein BOP1 homolog OS=Drosophila yakuba
GN=GE11901 PE=3 SV=1
Length = 784
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT+ + M +
Sbjct: 271 SFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRRIHD 330
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYD-DTTHQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D T + + + +PH
Sbjct: 331 PVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKR 372
>sp|B4KQU8|BOP1_DROMO Ribosome biogenesis protein BOP1 homolog OS=Drosophila mojavensis
GN=GI19116 PE=3 SV=1
Length = 792
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT + M +
Sbjct: 279 SFLPSVSEKKKVSRMVHALKMGWMKTTEEVEREKQQKRGPKFYMLWETDTGREHMRRIHD 338
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYDDT-THQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D+ T + + + +PH
Sbjct: 339 PVSAPKRDLPGHAESYNPPPEYLFDEKETKEWLKLKDEPHKR 380
>sp|O15020|SPTN2_HUMAN Spectrin beta chain, non-erythrocytic 2 OS=Homo sapiens GN=SPTBN2
PE=1 SV=3
Length = 2390
Score = 34.3 bits (77), Expect = 2.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 104 QPHSNIIPPSVGSYQSWTTEVLTIALMLLKPRTVGYDRISHTGEKLNHR 152
Q + P + + + T V IA LLK G DRI +T E+LNHR
Sbjct: 891 QQRFETLEPEMNTLAAQITAVNDIAEQLLKANPPGKDRIVNTQEQLNHR 939
>sp|B4LKS9|BOP1_DROVI Ribosome biogenesis protein BOP1 homolog OS=Drosophila virilis
GN=GJ22246 PE=3 SV=1
Length = 780
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 18 SFVPAYQH-------VAPVQNSGLNNMDMAAHQMTYNRPPEYYY---DDTTHQQMPVLPQ 67
SF+P+ V ++ + + + R P++Y DT + M +
Sbjct: 267 SFLPSVSEKKKVSRMVHALKMGWMKTTEEVEREKQKKRGPKFYMLWETDTGRESMRRIHD 326
Query: 68 PHSLNNMDMAAHQMTYNRPPEYYYDDT-THQQMPVLPQPHSN 108
P S D+ H +YN PPEY +D+ T + + +PH
Sbjct: 327 PVSAPKRDLPGHAESYNPPPEYLFDEKETKEWLKQKDEPHKR 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,396,816
Number of Sequences: 539616
Number of extensions: 12160133
Number of successful extensions: 24179
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 24131
Number of HSP's gapped (non-prelim): 61
length of query: 620
length of database: 191,569,459
effective HSP length: 124
effective length of query: 496
effective length of database: 124,657,075
effective search space: 61829909200
effective search space used: 61829909200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)