Query psy1562
Match_columns 620
No_of_seqs 363 out of 1942
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 17:19:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03212 uraD_N-term-dom puta 100.0 1E-30 2.2E-35 271.7 22.0 199 209-449 71-275 (297)
2 PRK15394 4-deoxy-4-formamido-L 99.9 1.1E-23 2.3E-28 219.3 23.6 199 204-449 3-254 (296)
3 TIGR03006 pepcterm_polyde poly 99.9 1E-22 2.2E-27 208.9 18.6 194 209-432 22-220 (265)
4 TIGR02764 spore_ybaN_pdaB poly 99.9 8.4E-22 1.8E-26 190.3 20.4 117 202-330 5-123 (191)
5 TIGR02884 spore_pdaA delta-lac 99.9 5.7E-21 1.2E-25 190.7 20.2 118 202-330 36-155 (224)
6 PF01522 Polysacc_deac_1: Poly 99.9 3.5E-22 7.7E-27 177.3 9.1 118 201-331 4-123 (123)
7 TIGR02873 spore_ylxY probable 99.8 5.6E-20 1.2E-24 189.0 20.3 117 202-330 84-202 (268)
8 COG0726 CDA1 Predicted xylanas 99.8 8.3E-17 1.8E-21 157.6 20.5 115 203-329 65-181 (267)
9 PRK14581 hmsF outer membrane N 99.5 1.1E-13 2.3E-18 157.8 15.2 122 202-335 106-275 (672)
10 PRK14582 pgaB outer membrane N 99.5 1.9E-13 4.2E-18 155.7 14.6 122 202-335 106-275 (671)
11 PF10096 DUF2334: Uncharacteri 97.8 0.0016 3.5E-08 66.7 18.1 111 206-329 3-146 (243)
12 COG3233 Predicted deacetylase 97.6 0.00075 1.6E-08 68.5 12.2 122 204-336 5-143 (233)
13 PF09960 DUF2194: Uncharacteri 97.4 0.013 2.7E-07 67.5 20.1 187 235-471 299-525 (585)
14 PF03065 Glyco_hydro_57: Glyco 95.0 0.052 1.1E-06 58.4 6.9 77 250-331 113-191 (360)
15 PF11959 DUF3473: Domain of un 91.5 1.1 2.4E-05 42.5 8.7 23 410-432 64-86 (133)
16 PF01607 CBM_14: Chitin bindin 90.1 0.069 1.5E-06 40.8 -0.6 34 479-512 19-53 (53)
17 COG1449 Alpha-amylase/alpha-ma 85.9 1.6 3.5E-05 51.0 6.7 75 251-330 183-262 (615)
18 PF04748 Polysacc_deac_2: Dive 84.7 5.4 0.00012 40.5 9.1 92 236-335 20-127 (213)
19 COG2861 Uncharacterized protei 83.0 51 0.0011 34.7 15.3 115 203-330 29-154 (250)
20 smart00494 ChtBD2 Chitin-bindi 82.2 0.62 1.3E-05 35.5 0.9 35 479-513 21-55 (56)
21 PF01074 Glyco_hydro_38: Glyco 67.6 26 0.00057 36.0 8.6 81 250-335 63-145 (275)
22 PF10827 DUF2552: Protein of u 63.0 6 0.00013 34.2 2.4 20 452-471 21-40 (79)
23 KOG1958|consensus 49.9 2.4E+02 0.0052 35.1 13.2 180 250-449 228-448 (1129)
24 PLN02428 lipoic acid synthase 46.4 2.4E+02 0.0052 31.2 11.8 88 236-330 181-278 (349)
25 COG0320 LipA Lipoate synthase 43.3 2E+02 0.0043 31.2 10.2 130 129-270 20-182 (306)
26 PLN02701 alpha-mannosidase 42.8 64 0.0014 40.4 7.5 77 250-331 105-183 (1050)
27 PF04794 YdjC: YdjC-like prote 35.8 2.3E+02 0.005 29.2 9.3 116 204-330 2-152 (261)
28 TIGR01358 DAHP_synth_II 3-deox 30.1 3.3E+02 0.0071 31.2 9.8 82 212-296 287-380 (443)
29 COG3531 Predicted protein-disu 27.8 1.5E+02 0.0032 30.7 6.0 71 251-335 20-92 (212)
30 PLN02291 phospho-2-dehydro-3-d 26.1 3.9E+02 0.0085 30.8 9.5 82 212-296 307-400 (474)
31 COG3603 Uncharacterized conser 24.4 1.8E+02 0.004 27.7 5.6 66 191-264 52-127 (128)
32 PRK02134 hypothetical protein; 22.1 6.2E+02 0.013 26.4 9.7 94 205-306 5-125 (249)
33 COG1543 Uncharacterized conser 22.0 2.2E+02 0.0048 32.8 6.7 76 251-331 127-204 (504)
No 1
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=99.97 E-value=1e-30 Score=271.66 Aligned_cols=199 Identities=14% Similarity=0.209 Sum_probs=161.4
Q ss_pred EeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccC--CCHHHHHHHHHcCCeeeeccccCccCCCCCCHHHHHHHH
Q psy1562 209 FDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEM 286 (620)
Q Consensus 209 FDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~--tny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ee~~~EI 286 (620)
+|.|.....++ ++++|++ .+||||||+++.. .++++|++|.++|||||+||++|.. +..++.+++++||
T Consensus 71 ~~YG~rvG~~R-iLdlL~~-------~gv~aTffv~g~~~e~~P~~v~~i~~~GHEIg~Hg~~H~~-~~~ls~~~e~~~i 141 (297)
T TIGR03212 71 YEYGSRAGFWR-LLRLFTE-------RGIPVTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWID-YQDMDEAQEREHI 141 (297)
T ss_pred hhhcchhCHHH-HHHHHHH-------cCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEeeccccCcc-cccCCHHHHHHHH
Confidence 78899988655 6799986 2699999999985 5699999999999999999999985 5789999999999
Q ss_pred HHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHH-cCCeEEeeccCCCCCCCCCcccccCCCCCCccCCCCCCCC
Q psy1562 287 IGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVED-FGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKS 365 (620)
Q Consensus 287 ~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e-~Gf~YDSSi~~d~~~~P~WPYTLDyg~p~~C~~~pCpt~s 365 (620)
.++.++|++++|++ ++|||++ ..+.+ ++++|++ .||+||||+..+ +. ||-+... .
T Consensus 142 ~~s~~~i~~~tG~~---P~G~~~~--~~s~~-T~~LL~e~~Gf~Y~sd~~~d--D~---Py~~~~~-------------~ 197 (297)
T TIGR03212 142 AEAIRLHTEVTGER---PLGWYTG--RTSPN-TRRLVAEEGGFLYDADSYAD--DL---PYWDEVA-------------G 197 (297)
T ss_pred HHHHHHHHHHhCCC---CceEECC--CCChh-HHHHHHHhcCceEeCchhhc--CC---CeEeecC-------------C
Confidence 99999999999975 6899974 66765 4899998 999999999986 33 4443211 1
Q ss_pred CCCEEEEccccccccCcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHhcCC---ceEEeecCCccCCchHHHHHHHH
Q psy1562 366 FPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK---APYMMPFHTNWFQIKELEQGLHK 442 (620)
Q Consensus 366 ~pGLWEVPm~~~~~dd~~Gg~c~~mD~c~~~~~s~dev~e~L~~nFDr~YegNR---APf~I~lHp~wlg~p~ri~aLer 442 (620)
..+++||++... +|+. +.+. ....++++++++|+++||.+|+..+ ..|.|.+||.++|+|+|+++|++
T Consensus 198 -~~~l~lP~~~~~-nD~~---~~~~----~~~~~~~~~~~~~~d~fd~l~~eg~~~~~~~~i~lHp~i~G~p~R~~~L~~ 268 (297)
T TIGR03212 198 -RPQLIVPYTLDA-NDMR---FATP----QGFNTGEQFFTYLRDAFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQR 268 (297)
T ss_pred -CCeEEEeccccc-CcHH---HHhc----cCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEecCccccCCHHHHHHHHH
Confidence 126779998643 4531 1111 1235789999999999999998432 36999999999999999999999
Q ss_pred HHHHHHh
Q psy1562 443 FLDWAAQ 449 (620)
Q Consensus 443 FLdyI~s 449 (620)
||+||++
T Consensus 269 ~l~~i~~ 275 (297)
T TIGR03212 269 FLDYVQS 275 (297)
T ss_pred HHHHHHh
Confidence 9999999
No 2
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=99.92 E-value=1.1e-23 Score=219.27 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=151.7
Q ss_pred eEEEEEe-C---CCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccC--------------------------------
Q psy1562 204 MILLTFD-G---AVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY-------------------------------- 247 (620)
Q Consensus 204 fVaLTFD-D---G~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~-------------------------------- 247 (620)
.|+|-.| | |...+ .+.++++|++ + +|+||||.+..-
T Consensus 3 ~~~l~idvdt~~~~~~g-~~~~~~~~~~--~-----~~~a~f~~~~gpd~~g~~~~r~~~~~fl~k~~r~~~~~~yg~~~ 74 (296)
T PRK15394 3 KVGLRIDVDTFRGTREG-VPRLLEILSK--H-----GIQASFFFSVGPDNMGRHLWRLLKPRFLWKMLRSNAASLYGWDI 74 (296)
T ss_pred eeEEEEEeecccccccC-HHHHHHHHHH--c-----CCCEEEEeccCCCchhHHHHHHhhhHHHHHHHhcCchhhcCHHH
Confidence 3566666 2 33344 5678899985 2 599999997420
Q ss_pred --------------CCHHHHHHHHHcCCeeeeccccCcc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCC
Q psy1562 248 --------------SDYSMIQNLANRGHEIGVETISLQD---GLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAP 310 (620)
Q Consensus 248 --------------tny~lVreL~~~GHEIAsHT~sH~~---~ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP 310 (620)
.++++|+++.++ ||||+|||+|.. .+..++.+++++||.++.++|++++|.+ ++|||+|
T Consensus 75 l~~g~~~PG~~I~~~~P~lvr~i~~~-HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~---p~g~raP 150 (296)
T PRK15394 75 LLAGTAWPGKEIGKALADIIREAAKA-HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQP---VTCSAAA 150 (296)
T ss_pred HhhcccCCCchHHHHCHHHHHHHHhc-CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCC---CCEEeCC
Confidence 136899999999 999999999983 2346899999999999999999999975 6899999
Q ss_pred CCCCChhHHHHHHHHcCCeEEeeccCCCCCCCCCcccccCCCCCCccCCCCCCCCCCCEEEEccccccccCcCCCCcccc
Q psy1562 311 FLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYL 390 (620)
Q Consensus 311 ~L~~s~dt~l~~L~e~Gf~YDSSi~~d~~~~P~WPYTLDyg~p~~C~~~pCpt~s~pGLWEVPm~~~~~dd~~Gg~c~~m 390 (620)
++..+.+ ++++|++.||+||||+..+ .|+||-+-+ .+ .|++|||++... +|.. +.
T Consensus 151 gw~~~~~-tl~ll~e~Gf~Y~Ss~~~d---~Py~~~~~~--------------g~-~~~veIP~tl~t-~D~~-----~g 205 (296)
T PRK15394 151 GWRADQR-VVEAKEAFGFRYNSDCRGT---HPFRPLLPD--------------GS-LGTVQIPVTLPT-WDEV-----IG 205 (296)
T ss_pred CccCCHH-HHHHHHHcCCeeecCCCCC---CceeeecCC--------------Cc-CCeEEEcccccc-chhh-----hc
Confidence 9999965 5899999999999999864 456654321 11 269999998543 2311 11
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhcCCceEEeecCCccCCchHHHHHHHHHHHHHHh
Q psy1562 391 DQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQ 449 (620)
Q Consensus 391 D~c~~~~~s~dev~e~L~~nFDr~YegNRAPf~I~lHp~wlg~p~ri~aLerFLdyI~s 449 (620)
...+.+++.+++++.|++ ..+.+ ++++||...|.+ ++.+|+++|+++++
T Consensus 206 -----~~~~~~~f~~~~~d~~~~---~~g~~-V~tiHP~v~G~~-~~~~fe~lL~~~~~ 254 (296)
T PRK15394 206 -----RDVKAEDFNDFILDRILR---DKGTP-VYTIHAEVEGIA-YAHNFEDLLKRAAQ 254 (296)
T ss_pred -----CCCCHHHHHHHHHHHhcc---ccCce-EEEECCCcCCcc-hHHHHHHHHHHHhc
Confidence 135678899999887766 22334 899999999988 89999999999987
No 3
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=99.90 E-value=1e-22 Score=208.89 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=131.9
Q ss_pred EeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCC--CHHHHHHHHHcCCeeeeccccCccCCCCCCHHHHHHHH
Q psy1562 209 FDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEM 286 (620)
Q Consensus 209 FDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~t--ny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ee~~~EI 286 (620)
+++.+..+ +..++++|++ .++||||||++... .+++|++|.++|||||+||++|.. +..++.+++++||
T Consensus 22 ~~~rv~~n-t~riL~lL~~-------~gikATFFv~g~~~e~~p~lir~i~~~GhEIgsHg~sH~~-l~~ls~ee~~~eI 92 (265)
T TIGR03006 22 LPCRVERN-TDRILDLLDR-------HGVKATFFTLGWVAERYPELVRRIVAAGHELASHGYGHER-VTTQTPEAFRADI 92 (265)
T ss_pred ccchHHHh-HHHHHHHHHH-------cCCcEEEEEeccchhhCHHHHHHHHHcCCEeeeccccCcC-chhCCHHHHHHHH
Confidence 44444443 6677899986 36999999999864 489999999999999999999985 6789999999999
Q ss_pred HHHHHHHHHhcCCCCCCceEeeCCCCCCChhH--HHHHHHHcCCeEEeeccCCCCCCCCCcccccCCCCCCccCCCCCCC
Q psy1562 287 IGMREILHHFANITRSDIVGMRAPFLLPGRNT--QFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTK 364 (620)
Q Consensus 287 ~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt--~l~~L~e~Gf~YDSSi~~d~~~~P~WPYTLDyg~p~~C~~~pCpt~ 364 (620)
.+++++|++++|.+ ++|||+|++..+..+ .+++|+++||.||||+.-.. .-.||++. .++++..
T Consensus 93 ~~s~~~Le~itG~~---~~gfRaP~~s~~~~t~~a~~iL~e~Gy~YdsS~~p~~--------~d~~g~~~---~~~~p~~ 158 (265)
T TIGR03006 93 RRSKALLEDLSGQP---VRGYRAPSFSIGKKNLWALDVLAEAGYRYSSSIYPVR--------HDHYGMPD---APRFPFR 158 (265)
T ss_pred HHHHHHHHHHhCCC---ceEEECCCCCCCCCcHHHHHHHHHCCCEEEEeeccCc--------CCcCCCCC---CCCCcee
Confidence 99999999999864 689999999887543 37999999999999995100 00122221 1122222
Q ss_pred CCCC-EEEEccccccccCcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHhcCCceEEeecCCccCC
Q psy1562 365 SFPG-VWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQ 432 (620)
Q Consensus 365 s~pG-LWEVPm~~~~~dd~~Gg~c~~mD~c~~~~~s~dev~e~L~~nFDr~YegNRAPf~I~lHp~wlg 432 (620)
...| |||||+++.- +.|...+..-... --.-+-.+.+++..... +..+.|+++|+||+.+.
T Consensus 159 ~~~g~l~e~P~s~~~---~~~~~~p~~gg~~-~r~~P~~~~~~~~~~~~---~~~~~~~~~y~Hpwe~d 220 (265)
T TIGR03006 159 PPNGRLLEVPVTTVR---LGGRNLPAAGGGY-FRLLPYALSRWALRRVN---GREGRPAIFYFHPWEID 220 (265)
T ss_pred cCCCcEEEEccchhh---hcccccccCCCcc-hhcChHHHHHHHHHHHH---hcCCceEEEEEchhhcC
Confidence 1123 9999998642 1111111110000 01234445444443333 23367999999998774
No 4
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=99.89 E-value=8.4e-22 Score=190.34 Aligned_cols=117 Identities=19% Similarity=0.319 Sum_probs=104.1
Q ss_pred CCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCC--CHHHHHHHHHcCCeeeeccccCccCCCCCCH
Q psy1562 202 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGY 279 (620)
Q Consensus 202 PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~t--ny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ 279 (620)
.+.|+||||||+....+..++++|++ .++||||||+|.+. +++++++|.++|||||+||++|.. +..++.
T Consensus 5 ~k~V~LTFDDgp~~~~t~~~l~~L~~-------~~ikaTfFv~g~~~~~~~~~~~~i~~~Gheig~Ht~~H~~-~~~~~~ 76 (191)
T TIGR02764 5 DKKIALTFDISWGNDYTEPILDTLKE-------YDVKATFFLSGSWAERHPELVKEIVKDGHEIGSHGYRHKN-YTTLED 76 (191)
T ss_pred CCEEEEEEECCCCcccHHHHHHHHHH-------cCCCEEEEeccHHHHHCHHHHHHHHhCCCEEEECCcCCCC-cccCCH
Confidence 47799999999997767778899985 25999999999864 589999999999999999999985 678999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeE
Q psy1562 280 EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIY 330 (620)
Q Consensus 280 ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~Y 330 (620)
+++++||.++.++|++.+|.. +++||+||+.++. .++++|+++||.+
T Consensus 77 ~~~~~ei~~~~~~l~~~~g~~---~~~fr~P~G~~~~-~~~~~l~~~G~~~ 123 (191)
T TIGR02764 77 EKIKKDILRAQEIIEKLTGKK---PTLFRPPSGAFNK-AVLKAAESLGYTV 123 (191)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---CCEEECCCcCCCH-HHHHHHHHcCCeE
Confidence 999999999999999999865 5799999999985 5699999999974
No 5
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=99.87 E-value=5.7e-21 Score=190.66 Aligned_cols=118 Identities=18% Similarity=0.354 Sum_probs=104.4
Q ss_pred CCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCC--CHHHHHHHHHcCCeeeeccccCccCCCCCCH
Q psy1562 202 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGY 279 (620)
Q Consensus 202 PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~t--ny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ 279 (620)
.+.|+||||||+.......++++|++ .+++|||||+|.+. +++++++|.++|||||+||++|.. +..++.
T Consensus 36 ~k~VaLTFDDGp~~~~t~~lL~~L~~-------~~vkATFFv~G~~~~~~p~~ir~i~~~GheIgnHt~~H~~-~~~ls~ 107 (224)
T TIGR02884 36 KKVIYLTFDNGYENGYTPKILDVLKE-------KKVPAAFFVTGHYIKTQPDLIKRMVDEGHIVGNHSVHHPS-LTAVND 107 (224)
T ss_pred CCEEEEEEECCCCccchHHHHHHHHH-------cCCCeEEEeechhhHHCHHHHHHHHHcCCEeeecCccCcC-cccCCH
Confidence 57899999999987767778899986 25999999999874 589999999999999999999985 678999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeE
Q psy1562 280 EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIY 330 (620)
Q Consensus 280 ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~Y 330 (620)
+++++||.++.++|++.+|.. .+..||+|++.++. .++++|+++||.+
T Consensus 108 ~~~~~ei~~~~~~i~~~~G~~--~~~~fR~P~G~~~~-~~~~~l~~~Gy~~ 155 (224)
T TIGR02884 108 EKFKEELTGVEEEFKKVTGQK--EMKYFRPPRGVFSE-RTLAYTKELGYYT 155 (224)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CCCEEeCCCCCcCH-HHHHHHHHcCCcE
Confidence 999999999999999999864 25789999999985 5699999999975
No 6
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=99.87 E-value=3.5e-22 Score=177.31 Aligned_cols=118 Identities=29% Similarity=0.431 Sum_probs=96.4
Q ss_pred CCCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCCC--HHHHHHHHHcCCeeeeccccCccCCCCCC
Q psy1562 201 TPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSD--YSMIQNLANRGHEIGVETISLQDGLQDKG 278 (620)
Q Consensus 201 ~PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~tn--y~lVreL~~~GHEIAsHT~sH~~~ls~lS 278 (620)
.++.|+||||||.... +..+.++|++ .++++||||++.+.. ++++++|.++|||||+||++|.. +..++
T Consensus 4 ~~~~v~ltfDdg~~~~-~~~~~~~l~~-------~~i~at~fv~~~~~~~~~~~l~~l~~~G~ei~~H~~~H~~-~~~~~ 74 (123)
T PF01522_consen 4 PKKSVALTFDDGYRDN-YDRLLPLLKK-------YGIPATFFVIGSWVERYPDQLRELAAAGHEIGNHGWSHPN-LSTLS 74 (123)
T ss_dssp TSSEEEEEEESHCHTH-HHHHHHHHHH-------TT--EEEEE-HHHHHHHHHHHHHHHHTT-EEEEE-SSSSC-GGGS-
T ss_pred CCCEEEEEEecCchhh-HHHHHHHHHh-------cccceeeeecccccccccccchhHHHHHHHHHhcCCcccc-cccCC
Confidence 3689999999999555 5667799986 259999999998653 69999999999999999999985 57899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeEE
Q psy1562 279 YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYD 331 (620)
Q Consensus 279 ~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~YD 331 (620)
.+++++||.++++.|++.+|. .+.+||+|++..+.+ ++++|+++||.||
T Consensus 75 ~~~~~~ei~~~~~~l~~~~g~---~~~~f~~P~g~~~~~-~~~~l~~~G~~y~ 123 (123)
T PF01522_consen 75 PEELRREIERSREILEEITGR---PPKGFRYPFGSYDDN-TLQALREAGYKYD 123 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---EESEEE-GGGEECHH-HHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CCcEEECCCCCCCHH-HHHHHHHcCCCcC
Confidence 999999999999999999997 467999999999964 6999999999997
No 7
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=99.85 E-value=5.6e-20 Score=188.97 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=104.1
Q ss_pred CCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCC--CHHHHHHHHHcCCeeeeccccCccCCCCCCH
Q psy1562 202 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGY 279 (620)
Q Consensus 202 PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~t--ny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ 279 (620)
.+.|+||||||+....+..++++|++ .+++|||||.|.+. ++++++++.++|||||+||++|.. +..++.
T Consensus 84 ~k~VaLTFDdg~~~~~t~~iL~iLkk-------~~vkATFFv~G~~i~~~p~l~k~i~~~GheIGnHT~sH~~-l~~ls~ 155 (268)
T TIGR02873 84 KPMVALLINVAWGNEYLPEILQILKK-------HDVKATFFLEGKWVKENSQLAKMIVEQGHEIGNHAYNHPD-MATLSK 155 (268)
T ss_pred CCEEEEEEeCCCCcchHHHHHHHHHH-------CCCCEEEEeehHhhhHCHHHHHHHHHCCCEEEecCCcCCC-cccCCH
Confidence 47899999999988777788999986 25999999999864 589999999999999999999985 678999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeE
Q psy1562 280 EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIY 330 (620)
Q Consensus 280 ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~Y 330 (620)
+++++||.++.++|++.+|.. ++.||+|+|.++. .++++++++||..
T Consensus 156 ~~~~~Ei~~~~~~i~~~~G~~---p~~fRpP~G~~n~-~~~~~l~~~G~~~ 202 (268)
T TIGR02873 156 EEIYDQINQTNEIIEATIGVT---PKWFAPPSGSFND-NVVQIAADLQMGT 202 (268)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---CCEEECCCCCCCH-HHHHHHHHCCCeE
Confidence 999999999999999999964 5799999999985 5799999999964
No 8
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=8.3e-17 Score=157.65 Aligned_cols=115 Identities=24% Similarity=0.394 Sum_probs=102.3
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCC--CHHHHHHHHHcCCeeeeccccCccCCCCCCHH
Q psy1562 203 QMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGYE 280 (620)
Q Consensus 203 QfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~t--ny~lVreL~~~GHEIAsHT~sH~~~ls~lS~e 280 (620)
+.|+||||||+.+.++..+++||++ .+++|||||.|.+. .+++++++.++|||||+||++|.. +..++.+
T Consensus 65 k~v~lTFDDg~~~~~~~~il~iL~k-------~~i~ATfFv~g~~i~~~p~~~~~~~~~Gheig~H~~~h~~-~~~~~~~ 136 (267)
T COG0726 65 KAVALTFDDGPLDGNTPRILPLLKK-------YGIKATFFVVGSWIERNPDLVKRIAEAGHEIGNHGYDHPD-LQDLSLE 136 (267)
T ss_pred CeEEEEeecCCCCCCcHHHHHHHHH-------cCCceEEEEehHhhHHCHHHHHHHHhccCeehhCcccCCC-cccCCHH
Confidence 7899999999999667888999986 25999999999864 489999999999999999999985 6788999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCe
Q psy1562 281 EWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFI 329 (620)
Q Consensus 281 e~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~ 329 (620)
+.++||.++...|.+.+|.. +++||+|++.++. .+..++++.|+.
T Consensus 137 ~~~~~i~~~~~~l~~~~g~~---~~~~r~p~g~~~~-~~~~~~~~~g~~ 181 (267)
T COG0726 137 ELGAEIARAHDILKKITGGR---PRGFRPPYGSYNE-SSLALARRLGYR 181 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCC---CceEECCCCccCH-HHHHHHHhCCCc
Confidence 99999999999999998865 6899999999985 568999999985
No 9
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=99.52 E-value=1.1e-13 Score=157.77 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=97.4
Q ss_pred CCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccC---------------------CCHHHHHHHHHcC
Q psy1562 202 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY---------------------SDYSMIQNLANRG 260 (620)
Q Consensus 202 PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~---------------------tny~lVreL~~~G 260 (620)
++.|+||||||+.+. +..+.+||++ .+++||||+++.+ .++++|++|.+.|
T Consensus 106 ~KaV~LTFDDGy~sn-y~~AlPILKk-------yg~pATfFvVg~wid~~~~~~v~~~~~~~~r~~~LTW~qIrEM~~sG 177 (672)
T PRK14581 106 DKAVLLTFDDGYSSF-YRRVYPLLKA-------YKWSAVLAPVGTWIDTATDKKVDFGGLSTDRDRFATWKQITEMSKSG 177 (672)
T ss_pred CCeEEEEEEcCCcch-HHHHHHHHHH-------cCCCEEEEEechhhccCcccccccccccccccccCCHHHHHHHHHCC
Confidence 688999999999874 6777899985 3599999998753 2467999999999
Q ss_pred -CeeeeccccCccCC-CC---------------------CC----HHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCC
Q psy1562 261 -HEIGVETISLQDGL-QD---------------------KG----YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLL 313 (620)
Q Consensus 261 -HEIAsHT~sH~~~l-s~---------------------lS----~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~ 313 (620)
||||+||++|.... .+ .+ .+++++||.++++.|++.+|.. ++.|+.|||.
T Consensus 178 LvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~---p~~FayPyG~ 254 (672)
T PRK14581 178 LVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQ---PRVWVWPYGA 254 (672)
T ss_pred CcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEcCCCC
Confidence 69999999986311 00 01 1346678899999999999964 5689999999
Q ss_pred CChhHHHHHHHHcCCeEEeecc
Q psy1562 314 PGRNTQFEVVEDFGFIYDSSVS 335 (620)
Q Consensus 314 ~s~dt~l~~L~e~Gf~YDSSi~ 335 (620)
++. .+.+++++.||.+..+..
T Consensus 255 yn~-~~~~iak~aGy~~afTt~ 275 (672)
T PRK14581 255 PNG-TVLNILRQHGYQLAMTLD 275 (672)
T ss_pred cCH-HHHHHHHHCCCcEEEECC
Confidence 996 569999999999877654
No 10
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=99.49 E-value=1.9e-13 Score=155.71 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=96.5
Q ss_pred CCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccCC---------------------CHHHHHHHHHcC
Q psy1562 202 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS---------------------DYSMIQNLANRG 260 (620)
Q Consensus 202 PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~t---------------------ny~lVreL~~~G 260 (620)
++.|+||||||+.+. +..+.+||++ .+++||||+++.+. ++++|++|.+.|
T Consensus 106 ~K~VaLTFDDGy~s~-yt~A~PILkk-------ygvpATfFlvg~wi~~~~~~~~~~~~~~~~r~~~LtWeqIreM~~sG 177 (671)
T PRK14582 106 EKAVLLTFDDGYSSF-YTRVFPILQA-------FQWPAVWAPVGSWVDTPADQPVKFGGEMVPREYFATWQQVREVARSR 177 (671)
T ss_pred CCeEEEEEEcCCCch-HHHHHHHHHH-------cCCCEEEEEechhhccCccccccccccccccccCCCHHHHHHHHhCC
Confidence 578999999999876 5667799985 25999999987542 357999999999
Q ss_pred -Ceeeeccc-cCccCCC---------------------CCCH----HHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCC
Q psy1562 261 -HEIGVETI-SLQDGLQ---------------------DKGY----EEWVGEMIGMREILHHFANITRSDIVGMRAPFLL 313 (620)
Q Consensus 261 -HEIAsHT~-sH~~~ls---------------------~lS~----ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~ 313 (620)
||||+||+ +|..... -.+. +++++||.++++.|++.+|.+ ++.||.|||.
T Consensus 178 lvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~---p~~FayPyG~ 254 (671)
T PRK14582 178 LVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKN---PRVWVWPYGE 254 (671)
T ss_pred CeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC---CcEEecCCCC
Confidence 69999998 5862100 0122 336789999999999999965 5689999999
Q ss_pred CChhHHHHHHHHcCCeEEeecc
Q psy1562 314 PGRNTQFEVVEDFGFIYDSSVS 335 (620)
Q Consensus 314 ~s~dt~l~~L~e~Gf~YDSSi~ 335 (620)
++. .+.+++++.||.+..+..
T Consensus 255 ~n~-~~~~iakeaGY~~afT~~ 275 (671)
T PRK14582 255 ANG-IALEELKKLGYDMAFTLE 275 (671)
T ss_pred CCH-HHHHHHHHCCCeEEEEeC
Confidence 985 579999999999866643
No 11
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=97.78 E-value=0.0016 Score=66.74 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=74.3
Q ss_pred EEEEeCCCCCCcHHHH---HHHHhcccCCCCCCCceEEEEEcccCC------------C---HHHHHHHHHcCCeeeecc
Q psy1562 206 LLTFDGAVNLNNYDHY---QKVFSDSRKNPNGCPMKGTFFISHEYS------------D---YSMIQNLANRGHEIGVET 267 (620)
Q Consensus 206 aLTFDDG~~~~~~~~~---ldIL~~~RkNpNGC~IkATFFVsg~~t------------n---y~lVreL~~~GHEIAsHT 267 (620)
+|.++|--....++.+ .++|.+ .+|+.+.+|.-.+. + .+.++.+.++|.+|+.||
T Consensus 3 lirleDVsP~~~~~~l~~i~d~l~~-------~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG 75 (243)
T PF10096_consen 3 LIRLEDVSPFSDLEKLKEIADYLYK-------YGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG 75 (243)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe
Confidence 5667774332334444 455554 24887777764421 2 368888999999999999
Q ss_pred ccCccC--CC-------------CCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCe
Q psy1562 268 ISLQDG--LQ-------------DKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFI 329 (620)
Q Consensus 268 ~sH~~~--ls-------------~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~ 329 (620)
++|... .+ ..+.++.++-|..+.+++++ .|+. +.||-+|....+.++ .++++ .+|.
T Consensus 76 YtHq~~~~~sg~~~ef~~~~~~~~~~~~~a~~ri~~gl~~l~~-~gi~---p~~f~aP~y~~s~~~-~~~~~-~~f~ 146 (243)
T PF10096_consen 76 YTHQYGNSVSGDGFEFWDSEFDAGDSEEEAKERIEKGLEILAE-LGIY---PVGFEAPHYWASPET-YKVLE-KYFT 146 (243)
T ss_pred cceecCCCcccccceeccccccccCCHHHHHHHHHHHHHHHHH-CCCc---ccEEECCccccCHHH-HHHHH-hhCc
Confidence 999862 00 14556666777777887776 6884 589999999999765 55554 3454
No 12
>COG3233 Predicted deacetylase [General function prediction only]
Probab=97.59 E-value=0.00075 Score=68.51 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=85.6
Q ss_pred eEEEEEeCCCC-CCcHHHHHHHHhcccCCCCCCCceEEE-EEcccC-------CC---HHHHHHHHHcCCeeeeccccCc
Q psy1562 204 MILLTFDGAVN-LNNYDHYQKVFSDSRKNPNGCPMKGTF-FISHEY-------SD---YSMIQNLANRGHEIGVETISLQ 271 (620)
Q Consensus 204 fVaLTFDDG~~-~~~~~~~ldIL~~~RkNpNGC~IkATF-FVsg~~-------tn---y~lVreL~~~GHEIAsHT~sH~ 271 (620)
.|.|-.|-++. ......+.+++++ . |....|+ +|.-.. .+ .+.+.+..++|+|++.||+.|.
T Consensus 5 ~iillhdVSpv~~~~~~~i~~~ide-~-----~~~~~t~lLViPn~~~~~~l~~d~rf~~~l~~r~e~Gdel~lHGy~h~ 78 (233)
T COG3233 5 LIILLHDVSPVYWPTLSNIDAAIDE-Y-----GAQNSTVLLVIPNHANDYPLSKDPRFVDLLTEREEEGDELVLHGYDHI 78 (233)
T ss_pred ceEEEEecCcccchhHHHHHHHHHH-h-----CCCCceEEEEeeccCCCCCcccChHHHHHHHHHHhcCCEEEEechhhc
Confidence 45666775432 3334444555554 2 3466776 775432 22 4888899999999999999997
Q ss_pred c----C-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeEEeeccC
Q psy1562 272 D----G-LQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSV 336 (620)
Q Consensus 272 ~----~-ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~YDSSi~~ 336 (620)
. . ...+...+-+.-+..+.+++++ .|++ .+||-+|-+..|.++ +++|-++||+|-+|+-+
T Consensus 79 d~~~~gEF~~l~~~eA~~RL~~a~~~l~~-~G~~---~~~FvpPrwlmS~gt-~~aL~~~~frv~a~l~~ 143 (233)
T COG3233 79 DTKRRGEFACLRAHEARLRLMAAIEELEA-LGFP---LRGFVPPRWLMSEGT-RQALLENNFRVTADLRG 143 (233)
T ss_pred cccCccccccchHHHHHHHHHHHHHHHHH-cCCc---ceeecCcceecCHhH-HHHhccCCcEEEecccc
Confidence 5 1 1223344445566777887876 7886 689999999999765 99999999999988764
No 13
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=97.39 E-value=0.013 Score=67.47 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=116.4
Q ss_pred CCceEEEEEcccCCC-----------------HHHHHHHHHcCCeeeeccccCccCC-CC----------C-CHHHHHHH
Q psy1562 235 CPMKGTFFISHEYSD-----------------YSMIQNLANRGHEIGVETISLQDGL-QD----------K-GYEEWVGE 285 (620)
Q Consensus 235 C~IkATFFVsg~~tn-----------------y~lVreL~~~GHEIAsHT~sH~~~l-s~----------l-S~ee~~~E 285 (620)
.++|.|.++...|.+ --..++|.+.|+|||.|||.|.... .+ | +.+++.+-
T Consensus 299 y~ikyTg~~I~~Y~~~~~~pf~~~~~~~~~~~~~~g~~Ll~~ggElG~HGYNHqpL~~~~~~~~~~~Y~~W~~~~~m~~s 378 (585)
T PF09960_consen 299 YGIKYTGVMIENYNDQTNPPFEFLEQEDTDRFIYFGRELLKSGGELGLHGYNHQPLTLEGDYGDEYGYKPWPSKEDMAES 378 (585)
T ss_pred cCCeEEEEEccccCCCCCCCcccccccchhhHHHHHHHHHhcCCceEEecccCCCCcCCCcccccccCcCCCCHHHHHHH
Confidence 369999999887632 1467899999999999999998421 23 4 55555555
Q ss_pred HHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHc--CCeEEeeccCCCCCCCCCcccccCCCCCCccCCCCCC
Q psy1562 286 MIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDF--GFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPT 363 (620)
Q Consensus 286 I~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~--Gf~YDSSi~~d~~~~P~WPYTLDyg~p~~C~~~pCpt 363 (620)
+...++.+++ .+ +...++-+=+|.=-.+..- +++|++. .+..-+|+...+.. --+|.-+++.
T Consensus 379 l~~l~~f~~~-l~-p~~~~~~YVPPSNils~eG-~e~L~~~~P~ik~IaS~Y~~~~~--~~~y~QEF~~----------- 442 (585)
T PF09960_consen 379 LKELKRFVKS-LF-PNYEPSSYVPPSNILSEEG-REALKKAFPEIKTIASLYFGDDE--EGEYVQEFEI----------- 442 (585)
T ss_pred HHHHHHHHHH-hC-CCcceEEecCCccccCHHH-HHHHHHhCCCeEEEEEeeecCCc--CCcceEEeeE-----------
Confidence 5555555555 22 4456777888987777543 6777763 24566666543211 1145444442
Q ss_pred CCCCCEEEEccccccccCcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHhcCCceEEeecCCc-cCCc--------h
Q psy1562 364 KSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTN-WFQI--------K 434 (620)
Q Consensus 364 ~s~pGLWEVPm~~~~~dd~~Gg~c~~mD~c~~~~~s~dev~e~L~~nFDr~YegNRAPf~I~lHp~-wlg~--------p 434 (620)
..+||.|+|=.+- | . +.+ + .++...+...- +-.-|.-++||. .+.. .
T Consensus 443 -~~dgi~e~PRisS------G-~--~~~----------~--~~~~~~~s~l~--~~Gv~sHFiHPDDvld~dR~~~~~W~ 498 (585)
T PF09960_consen 443 -APDGIVEFPRISS------G-Y--YPD----------D--YMLWAIVSALN--NHGVFSHFIHPDDVLDEDRNAGKGWE 498 (585)
T ss_pred -CCCCeEEeCcccc------C-C--ccC----------h--HHHHHHHHHHH--hheeeecccCCccccccccCCCCCHH
Confidence 1268999998541 1 0 111 1 22333344322 223578888985 3321 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCCcc
Q psy1562 435 ELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTT 471 (620)
Q Consensus 435 ~ri~aLerFLdyI~s~~~~~~~~~~~~~~~~~~~~~~ 471 (620)
...+.|++||+++.+ --||.|+-+++-
T Consensus 499 ~l~~~l~~~~~~i~~----------~~P~Lr~~T~Se 525 (585)
T PF09960_consen 499 ELYKSLDKFMSWIKE----------SYPWLRNLTASE 525 (585)
T ss_pred HHHHHHHHHHHHHHH----------hCCCcccCcHHH
Confidence 456799999999998 369999999876
No 14
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=95.02 E-value=0.052 Score=58.36 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCC-eeeeccccCccCCCCCCH-HHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcC
Q psy1562 250 YSMIQNLANRGH-EIGVETISLQDGLQDKGY-EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFG 327 (620)
Q Consensus 250 y~lVreL~~~GH-EIAsHT~sH~~~ls~lS~-ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~G 327 (620)
-+.++++.++|+ ||-.-+++|.. +.-++. ++.+.+|...++.+++..|.. ++||..|-..++. .+.++|+++|
T Consensus 113 i~~~~~l~~~G~iEll~~~~~h~i-lpl~~~~~d~~~Qi~~~~~~~~~~FG~~---P~G~W~pE~a~~~-~l~~~l~~~G 187 (360)
T PF03065_consen 113 IEAFRELAERGQIELLTSPYYHPI-LPLLPDPEDFRAQIEMGREYFKKHFGRR---PRGFWLPECAYSP-GLEEILAEAG 187 (360)
T ss_dssp HHHHHHHHHTTSEEEEEE-TT-B--GGGSSHHHHHHHHHHHHHHHHHHHHSS-----SBEE-GGG-B-T-THHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEeCchHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhCCC---CCceECcccccCH-HHHHHHHHcC
Confidence 578899999998 99999999974 455677 999999999999999999965 5799999999985 5799999999
Q ss_pred CeEE
Q psy1562 328 FIYD 331 (620)
Q Consensus 328 f~YD 331 (620)
++|-
T Consensus 188 i~~~ 191 (360)
T PF03065_consen 188 IRYT 191 (360)
T ss_dssp --EE
T ss_pred CEEE
Confidence 9983
No 15
>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised. It is about 130 amino acids in length and is found C-terminal to PF01522 from PFAM. It contains two completely conserved residues (P and H) that may be functionally important.
Probab=91.51 E-value=1.1 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=15.7
Q ss_pred HHHHHHhcCCceEEeecCCccCC
Q psy1562 410 DFNKYYTQNKAPYMMPFHTNWFQ 432 (620)
Q Consensus 410 nFDr~YegNRAPf~I~lHp~wlg 432 (620)
.+.+....++.|+++|+||+.+.
T Consensus 64 ~~~~~~~~~~~~~~~YfHPwE~d 86 (133)
T PF11959_consen 64 LIRRINRRGGQPAVFYFHPWEFD 86 (133)
T ss_pred HHHHHHhCCCcceEEEEeceecC
Confidence 33343334447999999999883
No 16
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=90.13 E-value=0.069 Score=40.81 Aligned_cols=34 Identities=32% Similarity=0.785 Sum_probs=26.2
Q ss_pred cccccCCCccccCCCCcchhhhhhhhhcccc-ccc
Q psy1562 479 SKCVDHHPYVSLCPSGLYFDDIKKLCTFKNE-ARC 512 (620)
Q Consensus 479 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 512 (620)
++|+++.+..-.||.|++||..++.|.+..+ +.|
T Consensus 19 ~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 19 YQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp EEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred EEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 4799999999999999999999999988877 655
No 17
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=85.88 E-value=1.6 Score=50.96 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=61.9
Q ss_pred HHHHHHHHcCC-eeeeccccCccCCCCCC----HHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHH
Q psy1562 251 SMIQNLANRGH-EIGVETISLQDGLQDKG----YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVED 325 (620)
Q Consensus 251 ~lVreL~~~GH-EIAsHT~sH~~~ls~lS----~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e 325 (620)
+..|++.+.|+ |+-.+++.|.-. .-+- .+++.+++...++..+++.|.. ++|||+|.+.++. .+.+++++
T Consensus 183 ~~~r~l~e~g~~e~~~~pyyHsl~-pl~~d~gw~~d~~~qv~~~~~~~~elfG~~---p~~~~~tEl~y~~-~i~~~~~e 257 (615)
T COG1449 183 EAFRELAESGKVELTASPYYHSLI-PLLADDGWYEDFKEQVMMSRELYKELFGVW---PSGFWNTELAYND-QILEYFEE 257 (615)
T ss_pred HHHHHHHhcCceEEEecccccccc-hhcccCCchHHHHHHHHHHHHHHHHHhCCC---CccccChhhhccH-HHHHHHHH
Confidence 77888888886 999999999731 2222 2378889999999999999974 5799999999985 57999999
Q ss_pred cCCeE
Q psy1562 326 FGFIY 330 (620)
Q Consensus 326 ~Gf~Y 330 (620)
.||.|
T Consensus 258 ~G~~~ 262 (615)
T COG1449 258 SGFSW 262 (615)
T ss_pred cCCcc
Confidence 99987
No 18
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=84.73 E-value=5.4 Score=40.53 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=49.1
Q ss_pred CceEEEEEcccCCC-HHHHHHHHHcCCeeeeccc----c--CccC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCce
Q psy1562 236 PMKGTFFISHEYSD-YSMIQNLANRGHEIGVETI----S--LQDG---LQDKGYEEWVGEMIGMREILHHFANITRSDIV 305 (620)
Q Consensus 236 ~IkATFFVsg~~tn-y~lVreL~~~GHEIAsHT~----s--H~~~---ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~ 305 (620)
|.+.||-|.-...+ -+.++...++||||-.|== . +..+ ..+++.++.++.+..+.+.+-.. +
T Consensus 20 p~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a--------~ 91 (213)
T PF04748_consen 20 PFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGA--------V 91 (213)
T ss_dssp STTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT---------S
T ss_pred CCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCc--------E
Confidence 57888887755444 5778888899999999842 1 1100 24577777666655543333222 3
Q ss_pred EeeCCCC---CCCh---hHHHHHHHHcCCeEEeecc
Q psy1562 306 GMRAPFL---LPGR---NTQFEVVEDFGFIYDSSVS 335 (620)
Q Consensus 306 GfRaP~L---~~s~---dt~l~~L~e~Gf~YDSSi~ 335 (620)
|.-.-.| ..+. ..+++.|++.|+-|==|.+
T Consensus 92 GvnNhmGS~~T~~~~~m~~vl~~l~~~gl~FvDS~T 127 (213)
T PF04748_consen 92 GVNNHMGSRFTSDREAMRWVLEVLKERGLFFVDSRT 127 (213)
T ss_dssp EEEEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S-
T ss_pred EEecCCCccccCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence 3322111 1121 2368899999998843333
No 19
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.98 E-value=51 Score=34.75 Aligned_cols=115 Identities=13% Similarity=0.134 Sum_probs=66.8
Q ss_pred CeEEEEEeC-CCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccC-CCHHHHHHHHHcCCeeeecccc----CccC---
Q psy1562 203 QMILLTFDG-AVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY-SDYSMIQNLANRGHEIGVETIS----LQDG--- 273 (620)
Q Consensus 203 QfVaLTFDD-G~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~-tny~lVreL~~~GHEIAsHT~s----H~~~--- 273 (620)
.-++|-.|| |.+....+ +|++- |...|.-+.-.- -.-+..+++.++||||-.|.=- +...
T Consensus 29 ~klaIVIddlG~~~~~~~---~i~~L--------p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~g 97 (250)
T COG2861 29 PKLAIVIDDLGLSQTGTQ---AILAL--------PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPG 97 (250)
T ss_pred ceEEEEECCccccHHHHH---HHHhC--------CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCC
Confidence 346888999 55544333 34432 345554333221 2347788999999999999632 2111
Q ss_pred -C-CCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeE
Q psy1562 274 -L-QDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIY 330 (620)
Q Consensus 274 -l-s~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~Y 330 (620)
+ ..++.++..+.|..+...+....|+.- -.|-|.=.-...-+.+.+.|++.|.-|
T Consensus 98 tL~~~~s~~e~~~rl~~a~~~v~~~~GlnN--hmGs~~tsn~~aM~~~m~~Lk~r~l~f 154 (250)
T COG2861 98 TLRPGMSAEEILRRLRKAMNKVPDAVGLNN--HMGSRFTSNEDAMEKLMEALKERGLYF 154 (250)
T ss_pred CcccCCCHHHHHHHHHHHHhhCccceeehh--hhhhhhcCcHHHHHHHHHHHHHCCeEE
Confidence 1 346777888888877777666666542 234443211111124677888888765
No 20
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=82.18 E-value=0.62 Score=35.52 Aligned_cols=35 Identities=34% Similarity=0.905 Sum_probs=31.8
Q ss_pred cccccCCCccccCCCCcchhhhhhhhhcccccccC
Q psy1562 479 SKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCG 513 (620)
Q Consensus 479 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (620)
.+|+....+...||.|++|+.-.+.|.+..++.|+
T Consensus 21 ~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~C~ 55 (56)
T smart00494 21 YQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVGCG 55 (56)
T ss_pred EEcCCCcEEeccCcCCCeECCCCCCcCCcccCCCC
Confidence 46899999999999999999999999999888876
No 21
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=67.63 E-value=26 Score=36.03 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCC-eeeeccccCccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeC-CCCCCChhHHHHHHHHcC
Q psy1562 250 YSMIQNLANRGH-EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRA-PFLLPGRNTQFEVVEDFG 327 (620)
Q Consensus 250 y~lVreL~~~GH-EIAsHT~sH~~~ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRa-P~L~~s~dt~l~~L~e~G 327 (620)
.+.+++++++|- ||..=+|.-.+ ..-.+.|.+.+.|...++.+++..|+.++ .|+-+ +||... .+.++|++.|
T Consensus 63 ~~~~~~lv~~Gri~~vgg~~~~~D-~~l~~~Eslirql~~G~~~~~~~fg~~~~--~~~~~D~FG~~~--~lP~il~~~G 137 (275)
T PF01074_consen 63 FKRIKKLVKEGRIEIVGGWYVQPD-ENLPSGESLIRQLLYGHKYLRKEFGVRPK--VAWQPDSFGHSA--QLPQILKQFG 137 (275)
T ss_dssp HHHHHHHHHTTSEEESSSBSS-B--SSSS-HHHHHHHHHHHHHHHHHHHTG--S--EEEESSSSSB-T--CHHHHHHTTT
T ss_pred HHHHHHHHHhceeEEeCceeeecc-ccCCCHHHHHHHHhhhHHHHHHhcCCCCC--eEEeCCCCCCch--hhHHHHhccC
Confidence 466689999995 54444454432 24468888999999999989888887653 57766 888775 4789999999
Q ss_pred CeEEeecc
Q psy1562 328 FIYDSSVS 335 (620)
Q Consensus 328 f~YDSSi~ 335 (620)
+.|-....
T Consensus 138 i~~~v~~r 145 (275)
T PF01074_consen 138 IKYFVIWR 145 (275)
T ss_dssp -SEEEESS
T ss_pred cceEEEec
Confidence 99876665
No 22
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=63.00 E-value=6 Score=34.16 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.7
Q ss_pred CCCCCCCcccccccCCCCcc
Q psy1562 452 LHDAIPHQLVPNQRAGTGTT 471 (620)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (620)
+|+|=|--||-|.-||..+-
T Consensus 21 l~~NhPYsLLHWSi~G~~~~ 40 (79)
T PF10827_consen 21 LNNNHPYSLLHWSIAGAESV 40 (79)
T ss_pred hcCCCCceeeeeeecccccc
Confidence 67788888999988888776
No 23
>KOG1958|consensus
Probab=49.91 E-value=2.4e+02 Score=35.13 Aligned_cols=180 Identities=19% Similarity=0.304 Sum_probs=102.1
Q ss_pred HHHHHHHHHcC-CeeeeccccCccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeC-CCCCCChhHHHHHHHHcC
Q psy1562 250 YSMIQNLANRG-HEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRA-PFLLPGRNTQFEVVEDFG 327 (620)
Q Consensus 250 y~lVreL~~~G-HEIAsHT~sH~~~ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRa-P~L~~s~dt~l~~L~e~G 327 (620)
-..|+.+.++| -||.+-||.-.+ -++...-...+++.....+|+...|+.++ .||.- |||-.+ ++.=+|+..|
T Consensus 228 k~a~k~lv~~GqlEIvtGGWVMpD-EAn~Hy~~~i~qliEGh~Wl~~~igv~P~--s~WaiDPFG~S~--TmpYLL~~ag 302 (1129)
T KOG1958|consen 228 KNAVKRLVKNGQLEIVTGGWVMPD-EANSHYFAMIDQLIEGHQWLKNNIGVTPQ--SGWAIDPFGYSS--TMPYLLRRAG 302 (1129)
T ss_pred HHHHHHHHhcCcEEEEeCccccCc-ccchhHHHHHHHHhhhhhHHhccCCCCCC--cccccCCCCCCc--chHHHHhhcC
Confidence 47899999999 699999998764 35566667778888889999999997765 35653 776543 4555666666
Q ss_pred Ce------------------------E----EeeccCCCCCCCCCcccccCCCCCCccCCC--CCCCCCCCEEEEccccc
Q psy1562 328 FI------------------------Y----DSSVSVPALKFPVWPYTLDHKIPHECKSGT--CPTKSFPGVWEVPLNAH 377 (620)
Q Consensus 328 f~------------------------Y----DSSi~~d~~~~P~WPYTLDyg~p~~C~~~p--Cpt~s~pGLWEVPm~~~ 377 (620)
|. | ||.-..|-. --+-||+ -|.+||.|-..| |=.-.+
T Consensus 303 ~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~-tHmMPFy-sYDIphTCGPdP~ICCqFDF----------- 369 (1129)
T KOG1958|consen 303 FENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLL-THMMPFY-SYDIPHTCGPDPKICCQFDF----------- 369 (1129)
T ss_pred chhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchh-eeecccc-cccCCCccCCCCceeeeeec-----------
Confidence 54 2 322222100 0123765 377899995433 211000
Q ss_pred cccCcCCCC--cccccccc-CCCCCHHHHHHHHHHHHHHHHhcCCceEEe---ecCCccCCc---hHHHHHHHHHHHHHH
Q psy1562 378 FVESYEGGH--CPYLDQCV-LHNHDSDEVLEWLKEDFNKYYTQNKAPYMM---PFHTNWFQI---KELEQGLHKFLDWAA 448 (620)
Q Consensus 378 ~~dd~~Gg~--c~~mD~c~-~~~~s~dev~e~L~~nFDr~YegNRAPf~I---~lHp~wlg~---p~ri~aLerFLdyI~ 448 (620)
..++|++ |+..-... -...+..+-.++|.+++.+.-+==|++..+ +=.+.+... ..-..-.++.+|||.
T Consensus 370 --kRmpg~~~~Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iN 447 (1129)
T KOG1958|consen 370 --KRMPGGGCECPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHIN 447 (1129)
T ss_pred --ccCCCCCcCCCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHh
Confidence 0122222 33321000 011233445577777777654433444433 333443332 233567888999998
Q ss_pred h
Q psy1562 449 Q 449 (620)
Q Consensus 449 s 449 (620)
+
T Consensus 448 s 448 (1129)
T KOG1958|consen 448 S 448 (1129)
T ss_pred c
Confidence 8
No 24
>PLN02428 lipoic acid synthase
Probab=46.41 E-value=2.4e+02 Score=31.19 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=50.0
Q ss_pred CceEEEEEcccCCCHHHHHHHHHcCCeeeeccccCccC----C--CCCCHHHHHHHHHHHHHHHHHhcCCCC--CCceEe
Q psy1562 236 PMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDG----L--QDKGYEEWVGEMIGMREILHHFANITR--SDIVGM 307 (620)
Q Consensus 236 ~IkATFFVsg~~tny~lVreL~~~GHEIAsHT~sH~~~----l--s~lS~ee~~~EI~gsreiLe~~tGIp~--~~I~Gf 307 (620)
.++...+++.-..+.++++.|.++|-++-.|...-... + ...+.+++.+-+..+++. .-|+.. .=+.|+
T Consensus 181 ~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~---~pGi~tkSg~MvGL 257 (349)
T PLN02428 181 EILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKES---KPGLLTKTSIMLGL 257 (349)
T ss_pred CcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHh---CCCCeEEEeEEEec
Confidence 36667766655557999999999999887777532100 1 134555555555544433 123331 113443
Q ss_pred eCCCCCCChh--HHHHHHHHcCCeE
Q psy1562 308 RAPFLLPGRN--TQFEVVEDFGFIY 330 (620)
Q Consensus 308 RaP~L~~s~d--t~l~~L~e~Gf~Y 330 (620)
++...+ .+++.|++.|+..
T Consensus 258 ----GET~Edv~e~l~~Lrelgvd~ 278 (349)
T PLN02428 258 ----GETDEEVVQTMEDLRAAGVDV 278 (349)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCE
Confidence 454332 2467778888754
No 25
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=43.32 E-value=2e+02 Score=31.20 Aligned_cols=130 Identities=17% Similarity=0.289 Sum_probs=75.1
Q ss_pred HHhhcccccccceeccCCCcccee------ecccCCCCCCCCCCccccccCCC----------CCcC--CCCccccCCCC
Q psy1562 129 LMLLKPRTVGYDRISHTGEKLNHR------VDLKKLTSFNNEAPTDLATRCDK----------SSCT--LPYCFCSKDGT 190 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~~c~~~~~~p~~~a~~Cd~----------~~C~--lPdC~Cs~~gt 190 (620)
.++-||.|.--+ .+.|++.... ..++-+|.+..=| |.. +|.. ..|. |+ ||.-+ +
T Consensus 20 ~~~rkP~Wlr~k--~p~~~~~~~~k~~~r~~~L~TVCEEA~CP--Ni~-ECw~~~tATFmImG~~CTR~C~--FC~V~-~ 91 (306)
T COG0320 20 ELLRKPEWLKVK--APTGSRYQEIKEILRKNGLHTVCEEASCP--NIG-ECWSRGTATFMILGDICTRRCR--FCDVK-T 91 (306)
T ss_pred hhccCcHhheec--CCCCchHHHHHHHHHhcCCceecccCCCC--ChH-HHhcCCceEEeeccchhccCCC--ccccC-C
Confidence 467899995544 6666554322 2345677754433 222 3443 3344 55 67764 4
Q ss_pred CCCCCCCCCCCCC-----------eEEEE---EeCCCCCCcHHHHHHHHhc-ccCCCCCCCceEEEEEcccCCCHHHHHH
Q psy1562 191 IIPGGLDAEDTPQ-----------MILLT---FDGAVNLNNYDHYQKVFSD-SRKNPNGCPMKGTFFISHEYSDYSMIQN 255 (620)
Q Consensus 191 ~~PGgL~p~d~PQ-----------fVaLT---FDDG~~~~~~~~~ldIL~~-~RkNpNGC~IkATFFVsg~~tny~lVre 255 (620)
-.|+.|+++++-+ .|+|| -||=...+. ..+.+..+. +..||+ ++.-..++.-.-+.+.++.
T Consensus 92 g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA-~hfa~~i~~Ire~~P~---t~iEvL~PDF~G~~~al~~ 167 (306)
T COG0320 92 GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGA-QHFAECIRAIRELNPQ---TTIEVLTPDFRGNDDALEI 167 (306)
T ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccch-HHHHHHHHHHHhhCCC---ceEEEeCccccCCHHHHHH
Confidence 5599999876543 68887 454333332 233233322 124442 3333444444457899999
Q ss_pred HHHcCCeeeeccccC
Q psy1562 256 LANRGHEIGVETISL 270 (620)
Q Consensus 256 L~~~GHEIAsHT~sH 270 (620)
+.+.|=+|-+|-+.-
T Consensus 168 v~~~~pdV~nHNvET 182 (306)
T COG0320 168 VADAGPDVFNHNVET 182 (306)
T ss_pred HHhcCcchhhccccc
Confidence 999999999998743
No 26
>PLN02701 alpha-mannosidase
Probab=42.82 E-value=64 Score=40.42 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCC-eeeeccccCccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeC-CCCCCChhHHHHHHHHcC
Q psy1562 250 YSMIQNLANRGH-EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRA-PFLLPGRNTQFEVVEDFG 327 (620)
Q Consensus 250 y~lVreL~~~GH-EIAsHT~sH~~~ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRa-P~L~~s~dt~l~~L~e~G 327 (620)
.+.|++++++|. ||..=+|.-.+ ......+.+.+++......|.+..|+.++ .||.. |||... ++..+|++.|
T Consensus 105 ~~~vk~LV~~GrLE~vgGgwvm~D-Ea~~~~esiI~Ql~~G~~~l~~~fG~~P~--~~W~iDpFGhs~--~~P~Ll~~~G 179 (1050)
T PLN02701 105 KEAFTKLVKNGQLEIVGGGWVMND-EANSHYFAIIEQITEGNMWLNDTIGVAPK--NSWAIDPFGYSS--TMAYLLRRMG 179 (1050)
T ss_pred HHHHHHHHHcCCEEEECCceeccc-ccccCHHHHHHHHHhhhHHHHhhcCCCCC--cCccCCCCCCCH--HHHHHHHhCC
Confidence 488999999995 79888887654 35567888888888888888888887653 67776 888764 5789999999
Q ss_pred CeEE
Q psy1562 328 FIYD 331 (620)
Q Consensus 328 f~YD 331 (620)
|.+-
T Consensus 180 ~~~~ 183 (1050)
T PLN02701 180 FENM 183 (1050)
T ss_pred CceE
Confidence 9863
No 27
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=35.81 E-value=2.3e+02 Score=29.21 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=67.1
Q ss_pred eEEEEEeC-CCCCCcHHHHHHHHhcccCCCCCCCceEE-EEEcccCCCHHHHHHHHHc-CCeeeeccc-cCccC------
Q psy1562 204 MILLTFDG-AVNLNNYDHYQKVFSDSRKNPNGCPMKGT-FFISHEYSDYSMIQNLANR-GHEIGVETI-SLQDG------ 273 (620)
Q Consensus 204 fVaLTFDD-G~~~~~~~~~ldIL~~~RkNpNGC~IkAT-FFVsg~~tny~lVreL~~~-GHEIAsHT~-sH~~~------ 273 (620)
.|.|.=|| |.....-..+.++++..+ +++| ..+++.+. .+.++.+.+. +-.||.|-. +...+
T Consensus 2 ~lii~ADDfG~s~~vn~gI~~~~~~G~-------vtstslM~n~p~~-~~a~~~~k~~~~~~vGlHl~Lt~g~p~~~p~~ 73 (261)
T PF04794_consen 2 KLIINADDFGLSPGVNRGIIEAFENGI-------VTSTSLMVNMPAF-EEAAALAKNNPGLDVGLHLNLTSGWPVLSPTQ 73 (261)
T ss_dssp EEEEEEEEETSSHHHHHHHHHHHHCCT--------SEEEEETTSTTH-HHHHHHHHH-TTTEEEEEE-S---SSSS-TTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHcCC-------ceEeeeccCChhH-HHHHHHHHhCCCCCEEEEeEccCCCCCCCccC
Confidence 46778888 777776666777776532 5544 55555543 4555555544 488999853 11100
Q ss_pred ----------------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCC---hhHHHHHHHHcCC
Q psy1562 274 ----------------------LQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPG---RNTQFEVVEDFGF 328 (620)
Q Consensus 274 ----------------------ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s---~dt~l~~L~e~Gf 328 (620)
...++.++.+.|+..+.+...+ .|+.+..+-|.-- .... .+.+++++++.|+
T Consensus 74 vpsLvd~~G~F~~~~~~~~~~~~~~~~~~ev~~E~~AQi~~f~~-~G~~P~hiD~H~h--~h~~p~v~~~~~~~a~~y~l 150 (261)
T PF04794_consen 74 VPSLVDEDGYFPRSKRLLRRALLRRADYEEVERELRAQIERFLD-MGRKPDHIDGHQH--VHFHPPVREALLDLAKEYGL 150 (261)
T ss_dssp SGGGBBTTTBB-SCC----HCHCCC--HHHHHHHHHHHHHHHHC-CSS-ECEEEEGGG--GGCSHHHHHHHHHHHHHCT-
T ss_pred CCCccCCCCccCCccccchhhhhccCCHHHHHHHHHHHHHHHHH-cCCCCCeEecccc--cccChHHHHHHHHHHHHcCC
Confidence 1345689999999999998888 8988766544311 0111 1345677788887
Q ss_pred eE
Q psy1562 329 IY 330 (620)
Q Consensus 329 ~Y 330 (620)
.+
T Consensus 151 p~ 152 (261)
T PF04794_consen 151 PW 152 (261)
T ss_dssp EB
T ss_pred Cc
Confidence 44
No 28
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=30.08 E-value=3.3e+02 Score=31.19 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHHhcccCCCCCCCceEEEEEc-cc--CCC--HHHHHHHHHcCCeee-----eccccCccC--CCCCCH
Q psy1562 212 AVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFIS-HE--YSD--YSMIQNLANRGHEIG-----VETISLQDG--LQDKGY 279 (620)
Q Consensus 212 G~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVs-g~--~tn--y~lVreL~~~GHEIA-----sHT~sH~~~--ls~lS~ 279 (620)
|++-. .+.++++++ +.||+.-+=|.|+-+- |. ..+ +.+|++..++||.|. .||.+.... .++-.-
T Consensus 287 GP~~~-p~~l~~L~~--~LnP~~epGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f 363 (443)
T TIGR01358 287 GPSMT-PDELLRLIE--RLNPENEPGRLTLISRMGADKIADKLPPLLRAVKAAGRRVVWVCDPMHGNTEEAASGYKTRRF 363 (443)
T ss_pred CCCCC-HHHHHHHHH--HhCCCCCCceEEEEeccCchHHHHhHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcH
Confidence 44333 345556665 5778877778887764 22 222 899999999999997 599887632 455678
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1562 280 EEWVGEMIGMREILHHF 296 (620)
Q Consensus 280 ee~~~EI~gsreiLe~~ 296 (620)
+.+.+|+.+..++.++.
T Consensus 364 ~~Il~Ev~~ff~vh~~~ 380 (443)
T TIGR01358 364 DDIRSEVKGFFEVHRAE 380 (443)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 89999999999988764
No 29
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=1.5e+02 Score=30.70 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=50.3
Q ss_pred HHHHHHHHc-CCeeeeccccCccC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCC
Q psy1562 251 SMIQNLANR-GHEIGVETISLQDG-LQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGF 328 (620)
Q Consensus 251 ~lVreL~~~-GHEIAsHT~sH~~~-ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf 328 (620)
.+|.++.+. |-||..|+=.-... -..++ ..|++.|...-..|++.+|.+ |++ +-...+|.+.||
T Consensus 20 Pll~~l~~~~gl~~~L~~GGl~aG~r~pl~-~~~r~~i~~hd~rIa~lTGqp----------Fg~---~y~~~lL~~~~~ 85 (212)
T COG3531 20 PLLEALSAQPGLEVVLHGGGLRAGNRRPLD-PAFRAYILPHDQRIAQLTGQP----------FGQ---AYFDGLLRDTGF 85 (212)
T ss_pred HHHHHHHhcCCceEEEecCCccCCCCCCCC-hHHHHHhhhhHHHHHHHhCCc----------cch---hHHhhhhcccCc
Confidence 566777666 99999998654321 02344 468999999999999999964 322 223468889999
Q ss_pred eEEeecc
Q psy1562 329 IYDSSVS 335 (620)
Q Consensus 329 ~YDSSi~ 335 (620)
.|||--.
T Consensus 86 v~DSepa 92 (212)
T COG3531 86 VYDSEPA 92 (212)
T ss_pred cccccHH
Confidence 9998754
No 30
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=26.10 E-value=3.9e+02 Score=30.83 Aligned_cols=82 Identities=12% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCCCcHHHHHHHHhcccCCCCCCCceEEEEEc-cc--CCC--HHHHHHHHHcCCeee-----eccccCcc--CCCCCCH
Q psy1562 212 AVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFIS-HE--YSD--YSMIQNLANRGHEIG-----VETISLQD--GLQDKGY 279 (620)
Q Consensus 212 G~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVs-g~--~tn--y~lVreL~~~GHEIA-----sHT~sH~~--~ls~lS~ 279 (620)
|++-. .+.++++++ +.||+.-+=|.|+-+- |. ..+ +.+|++..++||.|. .||.+... ..++-.-
T Consensus 307 GPs~~-pdel~~L~~--~LnP~~epGRlTLI~RmGa~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f 383 (474)
T PLN02291 307 SDKMD-PEELVKLIE--ILNPQNKPGRLTIIVRMGAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPF 383 (474)
T ss_pred CCCCC-HHHHHHHHH--HhCCCCCCceEEEEeccchHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcH
Confidence 44433 445566765 5788877778887663 22 223 899999999999997 58888753 2456678
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1562 280 EEWVGEMIGMREILHHF 296 (620)
Q Consensus 280 ee~~~EI~gsreiLe~~ 296 (620)
+.+.+||.+..++.++.
T Consensus 384 ~~Il~Ev~~ff~vh~~~ 400 (474)
T PLN02291 384 DAIRAEVRAFFDVHEQE 400 (474)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 89999999999988764
No 31
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=24.39 E-value=1.8e+02 Score=27.74 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCeEEEEEeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEccc-CCCH---------HHHHHHHHcC
Q psy1562 191 IIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHE-YSDY---------SMIQNLANRG 260 (620)
Q Consensus 191 ~~PGgL~p~d~PQfVaLTFDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~-~tny---------~lVreL~~~G 260 (620)
++|+....+ +-+..|+|++-..=+.+-.+..|+..-. -|| ...|+... -+|| ..|++|.++|
T Consensus 52 ~vp~~V~~~--~GW~~lk~~gpf~FgltGilasV~~pLs--d~g----igIFavStydtDhiLVr~~dLekAv~~L~eaG 123 (128)
T COG3603 52 RVPDVVQIE--KGWSCLKFEGPFDFGLTGILASVSQPLS--DNG----IGIFAVSTYDTDHILVREEDLEKAVKALEEAG 123 (128)
T ss_pred cCCcceEec--CCeEEEEEeccccCCcchhhhhhhhhHh--hCC----ccEEEEEeccCceEEEehhhHHHHHHHHHHcC
Confidence 456554333 6788999987554443333333332201 123 23354433 3442 6789999999
Q ss_pred Ceee
Q psy1562 261 HEIG 264 (620)
Q Consensus 261 HEIA 264 (620)
|||.
T Consensus 124 hev~ 127 (128)
T COG3603 124 HEVL 127 (128)
T ss_pred Cccc
Confidence 9985
No 32
>PRK02134 hypothetical protein; Provisional
Probab=22.15 E-value=6.2e+02 Score=26.44 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=58.7
Q ss_pred EEEEEeC-CCCCCcHHHHHHHHhcccCCCCCCCce-EEEEEcccCCCHHHHHHHHH-cCCeeeecc-ccCccC------C
Q psy1562 205 ILLTFDG-AVNLNNYDHYQKVFSDSRKNPNGCPMK-GTFFISHEYSDYSMIQNLAN-RGHEIGVET-ISLQDG------L 274 (620)
Q Consensus 205 VaLTFDD-G~~~~~~~~~ldIL~~~RkNpNGC~Ik-ATFFVsg~~tny~lVreL~~-~GHEIAsHT-~sH~~~------l 274 (620)
+.+.=|| |.+...-.-+.+.++..+ ++ +|..+++.... +.++.+.. .+--||.|- .+...+ +
T Consensus 5 lIinADDfG~s~~vn~gI~~~~~~G~-------ltstslM~n~p~~~-~a~~l~~~~~~l~vGlHl~Lt~g~P~~~~psL 76 (249)
T PRK02134 5 LIVNADDFGLSKGQNYGIIEAHRNGV-------VTSTTAMVNMPAID-HAVQLSREYPSLGVGMHFVLTAGKPLTAMPSL 76 (249)
T ss_pred EEEECCcCCCCHHHHHHHHHHHHCCC-------eeEEEeecCCchHH-HHHHHHHhCCCCCEEEEEEecCCCccCCCCCC
Confidence 6777888 777665555666665422 44 44556655443 34444433 367899993 221111 1
Q ss_pred -----------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCCceE
Q psy1562 275 -----------------QDKGYEEWVGEMIGMREILHHFANITRSDIVG 306 (620)
Q Consensus 275 -----------------s~lS~ee~~~EI~gsreiLe~~tGIp~~~I~G 306 (620)
..++.++.+.|+..+.+...+.+|+.+..+-|
T Consensus 77 ~d~~G~F~~~~~~~~~~~~~~~~ev~~E~~aQi~~f~~~~G~~p~hiD~ 125 (249)
T PRK02134 77 TDRDGLLGKWIWQLAEEGTLPLEEIAQELAAQYERFLSLFGRKPTHLDS 125 (249)
T ss_pred cCCCCCccHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhCCCCCeeec
Confidence 13557888899999998888888988876666
No 33
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=22.03 E-value=2.2e+02 Score=32.85 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHHHHcC-CeeeeccccCcc-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCC
Q psy1562 251 SMIQNLANRG-HEIGVETISLQD-GLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGF 328 (620)
Q Consensus 251 ~lVreL~~~G-HEIAsHT~sH~~-~ls~lS~ee~~~EI~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf 328 (620)
+..+++.+.| -||-.-+.+|-. ++-+. ++.+.++|....+.-++..|.. +.|+-.|-..+.+ -+-.+|++.|+
T Consensus 127 ~~f~~~~~~g~ieilts~athg~lPll~~-peAi~AQi~~g~~~ye~~fg~~---P~GiWlPEcay~p-gie~~l~~~Gi 201 (504)
T COG1543 127 EAFKELQRSGGIEILTSAATHGYLPLLGG-PEAIEAQILTGIELYEEHFGLA---PKGIWLPECAYAP-GIERILKDAGI 201 (504)
T ss_pred HHHHHHHHcCCceeeeehhhheehhhcCC-chhhHHHHHHHHHHHHHHhCCC---CCceechhhcccc-chHHHHHhcCc
Confidence 4556666654 699888888853 12233 6888899999999999999964 6899999888875 46889999999
Q ss_pred eEE
Q psy1562 329 IYD 331 (620)
Q Consensus 329 ~YD 331 (620)
+|-
T Consensus 202 ~yf 204 (504)
T COG1543 202 EYF 204 (504)
T ss_pred eEE
Confidence 994
Done!