RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1562
(620 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 63/431 (14%), Positives = 124/431 (28%), Gaps = 150/431 (34%)
Query: 116 SYQSWTTEVLTIALMLLKPRTVGYDRISHTGEKL-NHRVDLKK-LTSFNNEAPTD-LATR 172
+Y +++ + L R + EK+ +++ + L + +N D L +
Sbjct: 179 TYHVLVGDLIKFSAETLSELI----RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS- 233
Query: 173 CDKSSCTLP---------YC-FCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQ 222
+ P Y G TP + GA H Q
Sbjct: 234 ---IPISCPLIGVIQLAHYVVTAKLLGF----------TPGELRSYLKGATG-----HSQ 275
Query: 223 KVF-------SDSRKNPNGCPMKGT---FFI---SHE-YSDYS----MIQNLANRGHEIG 264
+ +DS ++ K FFI +E Y + S ++++ G
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--G 333
Query: 265 VET--ISLQDGLQDKGYEEWVGEM-----------IGMREILHHFANITRSDIV-GMRAP 310
V + +S+ L + +++V + I + N ++ +V G P
Sbjct: 334 VPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLV-------NGAKNLVVSG--PP 383
Query: 311 FLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLD-HKIPHECKSGTCPTKSFPGV 369
L G N P+ LD +IP + + F
Sbjct: 384 QSLYGLNLTLR-----------KAKAPS--------GLDQSRIPF-SERKLKFSNRF--- 420
Query: 370 WEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYM-MP-FH 427
+P+ + F H L + + +D K A + +P +
Sbjct: 421 --LPVASPF-------HSHLL----------VPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 428 T-NWFQIKELEQGLHKFL---------DWAAQNTLHDAIPH-------------QLVPNQ 464
T + ++ L + + + W + T H L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 465 RAGTGTTQVLG 475
+ GTG ++
Sbjct: 520 KDGTGVRVIVA 530
Score = 45.4 bits (107), Expect = 5e-05
Identities = 54/337 (16%), Positives = 88/337 (26%), Gaps = 116/337 (34%)
Query: 303 DIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHEC--KSGT 360
D R P L + E + VP + + E K
Sbjct: 2 DAYSTR-PLTL--SHGSLEH----------VLLVPT---ASFFIASQLQ---EQFNKILP 42
Query: 361 CPTKSFPGVWE----VPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYT 416
PT+ F E L F+ G+ L + D+VL +F
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFL-----GYVSSLVEP-SKVGQFDQVLNLCLTEFE---- 92
Query: 417 QNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGL 476
+ +L N +H A+ +L+ T+ L +
Sbjct: 93 ------------------------NCYL---EGNDIH-ALAAKLLQENDTTLVKTKEL-I 123
Query: 477 GC---SKCVDHHPYVSLCPSGL-----------------------YFDDIKKL-CTFKN- 508
++ + P+ S L YF++++ L T+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 509 --------EARCGPLPTSKPDV--WFVTITQALTWMTNPKS--SKELLNYDAWKCAKSET 556
L + D F L W+ NP + K+ L S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS----IPIS-- 237
Query: 557 APL----EACNLPNKC-ALGFRPPEANISATRYLTTC 588
PL + + LGF P E S + T
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELR-SYLKGATGH 273
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus
tridentatus} SCOP: g.31.1.1
Length = 74
Score = 44.8 bits (106), Expect = 2e-06
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 478 CSK---CVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTS 518
C C + CP GL+++ K+C + ++A C +
Sbjct: 24 CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNKE 67
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan,
TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter
pylori}
Length = 326
Score = 47.1 bits (112), Expect = 9e-06
Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 28/204 (13%)
Query: 237 MKGTFFI-SHEYSDY-SMIQNLANRGHEI---GVETISLQDGLQDKGYEEWVGEMIGMRE 291
+ T+F+ H + ++ + + GHE+ G + EE V + +
Sbjct: 88 LPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIA--MSTKQEEDV-----LLK 140
Query: 292 ILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVS---------VPALKFP 342
+ ++T G AP+ T E++ GF YD S+ +
Sbjct: 141 SVELIKDLTGKAPTGYVAPWWEFSNIT-NELLLKHGFKYDHSLMHNDFTPYYVRVGDSWS 199
Query: 343 VWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDE 402
Y+L+ K + T + E+P N + + +
Sbjct: 200 KIDYSLEAKDWMKPLIRGVET----NLVEIPANWYLDDLPPMMFIKKSPNSFGFV-SPRD 254
Query: 403 VLEWLKEDFNKYYTQNKAPYMMPF 426
+ + + F+ Y + +
Sbjct: 255 IGQMWIDQFDWVY-REMDYAVFSM 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.043
Identities = 72/549 (13%), Positives = 127/549 (23%), Gaps = 218/549 (39%)
Query: 17 YSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSLNNMDM 76
Y F+ + Q S + M + YN + + V + +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-------AKYNV-SRLQPYLKLRQ 142
Query: 77 AAHQMTYNRPPEY------------------YYDDTTHQQMPVLPQPHSNIIPPSVGSYQ 118
A ++ RP + +M I ++ +
Sbjct: 143 ALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN 193
Query: 119 SWTTEVLTIALML-------LKPRTVGYDRISHTGEKLNHRV------------------ 153
S VL + L R+ I + +
Sbjct: 194 S-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 154 --DLKKLTSFNNEAPTDLATRCDKS-------SCTLPYCFCSKDGTIIPG---------- 194
+ K +FN L TR K + T T+ P
Sbjct: 253 VQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 195 GLDAEDTPQMILLTF------------DGAVNLNNYDHYQK------------------- 223
+D P+ +L T DG +N+ H
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 224 --------VFSDSRKNPNG------------CPMKGTFFISHEYSDYSMIQNLANRG--- 260
VF S P M + ++ YS+++
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV----VVNKLHKYSLVEKQPKESTIS 427
Query: 261 -HEIGVETISLQDGLQD------------KGYEEWVGEMIGMRE-------ILHHFANIT 300
I +E + K ++ ++I I HH NI
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIE 485
Query: 301 RSDIVGM-RAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSG 359
+ + + R FL DF F+ + KI H+ +
Sbjct: 486 HPERMTLFRMVFL------------DFRFL-------------------EQKIRHDSTAW 514
Query: 360 TCP-----------------TKSFPGVWEVPLNA--HFVESYEGG--HCPYLD--QCVLH 396
+ P +E +NA F+ E Y D + L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLICSKYTDLLRIAL- 572
Query: 397 NHDSDEVLE 405
+ + + E
Sbjct: 573 MAEDEAIFE 581
Score = 35.2 bits (80), Expect = 0.083
Identities = 56/458 (12%), Positives = 117/458 (25%), Gaps = 147/458 (32%)
Query: 199 EDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLA- 257
+ ++ F V NY ++ P+ M +I Y+ Q A
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAK 128
Query: 258 ---NRGHEIGVETISLQDGLQDKGYEEWV---GEMIGM-REILHHFANITRSDIVGMRAP 310
+R + L+ L + + V G ++G + + ++ S V +
Sbjct: 129 YNVSRLQPY----LKLRQALLELRPAKNVLIDG-VLGSGKTWV--ALDVCLSYKVQCKMD 181
Query: 311 F----------------LLPGRNTQFEVVEDFGFIYDSSVSVP--------ALK--FPVW 344
F L + +++ ++ D S ++ L+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 345 PYT-----LDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYL----DQCVL 395
PY L + V NA ++ C L + V
Sbjct: 242 PYENCLLVLLN------------------VQ----NAKAWNAFNLS-CKILLTTRFKQVT 278
Query: 396 HNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDA 455
+ + + T ++ K L L + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEV-------------KSL------LLKYL--DCRPQD 317
Query: 456 IPHQLVPNQRAGTGTTQVLGLGCSKCVDHHP-----Y-----------VSLCPSGLYFDD 499
+P + T + L + ++ + + + + L +
Sbjct: 318 LPRE------VLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 500 IKKLCTFKNEARCGPLPTSKPDVWFVTIT-QALTWMTNPKSSKELLNYDAWKCAKSETAP 558
+K+ F P P I L L+ W
Sbjct: 371 YRKM--FDR---LSVFP---PSAH---IPTILL----------SLI----WFDVIKSDVM 405
Query: 559 LEACNLPNKCALGFRPPEANISA-TRYLTTCRECPRKY 595
+ L + +P E+ IS + YL + +Y
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, carbohydrate
esterase family 4; 2.01A {Mycobacterium smegmatis}
Length = 300
Score = 34.7 bits (80), Expect = 0.066
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 237 MKGTFFI-SHEYSDY-SMIQNLANRGHEI---GVETISLQDGLQDKGYEEWVGEMIGMRE 291
+ GTFF+ + + I+++A GHEI G SL D+ E + +
Sbjct: 76 VPGTFFVPGYTAHRHPEPIRSIARAGHEIAHHGYLHESLVGA--DEDTERKI-----LTR 128
Query: 292 ILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSS---------VSVPALKFP 342
+ + VG RAP +T +++ +FGF+YDS+ ++V
Sbjct: 129 GIEALEEVAGVHPVGYRAPMWEMNWHT-PKLLAEFGFLYDSTLMDSDHPYELAVGDGSLV 187
Query: 343 VWPYTLD 349
P +
Sbjct: 188 ELPVSWA 194
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 32.0 bits (73), Expect = 0.54
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 478 CSK---CVDHHPYVSLCPSGLYFDDIKKLCT 505
S C + CP+GL F + K CT
Sbjct: 413 RSSFYSCAAGRLFQQSCPTGLVFSNSCKCCT 443
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 1.4
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 16/52 (30%)
Query: 360 TCPT-KSFPGVWEVPLNAHFVESYEGG--HCPYLDQC--VLHNHDSDEVLEW 406
TCP K +P VE + G C C VL + D EW
Sbjct: 23 TCPECKVYPP--------KIVERFSEGDVVC---ALCGLVLSDKLVDTRSEW 63
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
protein, microsporidian, chitin deacetylase, hydrolase,
inactive; 1.50A {Encephalitozoon cuniculi}
Length = 254
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 238 KGTFFI---SHEYSDY-SMIQNLANRGHEIGVETISLQD-GLQDKGYEEWVGEMIGMREI 292
K TF + + + GH + + D G Q + + +
Sbjct: 54 KATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRVDPSMDEGYQCLSQDALENNVDREIDT 113
Query: 293 LHHFANITRSDIVGMRAPFLLPGRN-TQFEVVEDFGFI 329
+ ++ ++I P N + ++ + G +
Sbjct: 114 I---DGLSGTEIRYAAVPICNGQVNSEMYNILTERGVL 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.5
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 8/26 (30%)
Query: 432 QIKELEQGLHKFLDWAAQNTLHDAIP 457
+K+L+ L + D D+ P
Sbjct: 21 ALKKLQASLKLYAD--------DSAP 38
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH
zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 69
Score = 26.8 bits (59), Expect = 3.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 380 ESYEGGHCPYLDQCVLHNHDSDEVLEWLK 408
+ Y G CP + C H + E+ EW +
Sbjct: 24 DRYMNGTCPEGNSCKF-AHGNAELHEWEE 51
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR
{Kluyveromyces marxianus}
Length = 152
Score = 28.2 bits (62), Expect = 5.4
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 279 YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLP-GRNTQFEVVEDFGFIYDSSVSVP 337
E+ ++ +R +L +A + R V + +T E+ YD VP
Sbjct: 9 LPEYNEQIPNVRSLLTKWAKVERIQDVQDGLQLDVRLKTDTLLELH----IYYDHVYHVP 64
Query: 338 ALKFPVWPYTLDHKIP 353
++KF +W + I
Sbjct: 65 SIKFRLWSLDTEEDIS 80
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 28.4 bits (64), Expect = 5.7
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 238 KGTFFISHEYSDY--SMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHH 295
+ TFF+ + + ++Q + + GH++G T L GY+ +M + E++
Sbjct: 60 RATFFVLGDAAAQNPGLLQRMRDEGHQVGAHTYDHVS-LPSLGYDGIASQMTRLEEVI-- 116
Query: 296 FANITRSDIVGMRAPF 311
MR P+
Sbjct: 117 -RPALGVAPAYMRPPY 131
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein
complex, rossman fold; HET: SAH; 2.00A {Sars
coronavirus} PDB: 2xyv_A* 2xyr_A*
Length = 290
Score = 28.2 bits (62), Expect = 8.2
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 548 AWKCA-------KSETAPLEACNLPNKCALGFRPPEANISATRYLTTC 588
AW+ K + LE C+L N P ++ +Y C
Sbjct: 4 AWQPGVAMPNLYKMQRMLLEKCDLQNYGENAVIPKGIMMNVAKYTQLC 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.436
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,871,726
Number of extensions: 587709
Number of successful extensions: 1371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 23
Length of query: 620
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 521
Effective length of database: 3,937,614
Effective search space: 2051496894
Effective search space used: 2051496894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)