RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1562
(620 letters)
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
tridentatus) [TaxId: 6853]}
Length = 73
Score = 37.6 bits (87), Expect = 2e-04
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 478 CSK---CVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCG 513
C C + CP GL+++ K+C + ++A C
Sbjct: 24 CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCT 62
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 33.9 bits (77), Expect = 0.045
Identities = 37/230 (16%), Positives = 61/230 (26%), Gaps = 40/230 (17%)
Query: 198 AEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLA 257
L + + R P + +I+ +
Sbjct: 63 VRHMSMESLYEYGSRAGV----WRLLKLFKRRNVPLTVFAVAMAAQRN----PEVIRAMV 114
Query: 258 NRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRN 317
GHEI D Q + M+ IL VG P N
Sbjct: 115 ADGHEICSHGYRWIDY-QYMDEAQEREHMLEAIRILTELTGQ---RPVGWYTGRTGP--N 168
Query: 318 TQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAH 377
T+ V+E+ GF+YDS P W + P P +
Sbjct: 169 TRRLVMEEGGFLYDS--DTYDDDLPYW---------DPASTAEKPHLVIPYTLDTNDMRF 217
Query: 378 FVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK-APYMMPF 426
V ++ ++ ++LK+ F+ Y + AP M+
Sbjct: 218 T--------------QVQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSI 253
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 0.55
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 15/111 (13%)
Query: 198 AEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDY------S 251
E+ + + L D +L + RK + G S Y +
Sbjct: 271 PEEPKRRLWLFIDELASLEKLASLADALTKGRKA-GLRVVAGLQSTSQLDDVYGVKEAQT 329
Query: 252 MIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRS 302
+ + + + L D E + +G E+ +
Sbjct: 330 LRASFRSL--------VVLGGSRTDPKTNEDMSLSLGEHEVERDRYSKNTG 372
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 29.9 bits (66), Expect = 0.83
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 18/118 (15%)
Query: 192 IPGGLDAED--TPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSD 249
+P G P ++ LT+D ++ ++N ++ TFF++
Sbjct: 1 VPVGTPILQCTQPGLVALTYDDGPF----TFTPQLLDILKQN----DVRATFFVNGNNWA 52
Query: 250 Y-------SMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANIT 300
I+ + GH +G T + D + + +M + E
Sbjct: 53 NIEAGSNPDTIRRMRADGHLVGSHTYAHPDL-NTLSSADRISQMRQLEEATRRIDGFA 109
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 29.4 bits (66), Expect = 1.3
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 367 PGVWEVPLNAHFVESYEGGHCPYLDQCVLH------NHDSDEV---LEWLKEDFNKYYTQ 417
G+ ++ +F ES+ G +D L +D E+ L W ++F +
Sbjct: 185 MGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRYGEDE 244
Query: 418 NKAPY 422
N Y
Sbjct: 245 NNKQY 249
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/162 (7%), Positives = 38/162 (23%), Gaps = 3/162 (1%)
Query: 373 PLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYM---MPFHTN 429
PL + +E + + V + + + L+ + + +
Sbjct: 35 PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKE 94
Query: 430 WFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVS 489
+ + +N L + + + +
Sbjct: 95 ELANSYVIDADNYLFKNMFRNDLTRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAG 154
Query: 490 LCPSGLYFDDIKKLCTFKNEARCGPLPTSKPDVWFVTITQAL 531
SG+ F D + + D+++ + +
Sbjct: 155 RILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDN 196
>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia
coli [TaxId: 562]}
Length = 171
Score = 28.3 bits (62), Expect = 2.0
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 59 HQ-QMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSNIIPPSVGSY 117
HQ MP P P L + A + + PP + + V P N + V
Sbjct: 2 HQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEP 61
Query: 118 QSW 120
Sbjct: 62 HRQ 64
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 24.8 bits (54), Expect = 5.7
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 477 GCS-KCVDH--HPYVSLCPSGLYFDDIKKLCTFKNEARCGPLP 516
GC C DH C G CT E CG +P
Sbjct: 8 GCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIP 50
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 24.8 bits (54), Expect = 7.3
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 477 GCS-KCVDH--HPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTSKP 520
C C + + V C G + +K C CG + S+
Sbjct: 9 RCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQT 55
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha
[TaxId: 82367]}
Length = 123
Score = 25.9 bits (56), Expect = 8.3
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 17/93 (18%)
Query: 10 KMNNMSP---YSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLP 66
M N F PA+ P D + + + +
Sbjct: 6 HMLNKGESGAMVFEPAFVRAEPGDVINFVPTDKSHN--------------VEAIKEILPE 51
Query: 67 QPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQM 99
S + ++ +T P Y T H M
Sbjct: 52 GVESFKSKINESYTLTVTEPGLYGVKCTPHFGM 84
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis
sp.), pcc 6803 [TaxId: 1143]}
Length = 98
Score = 25.5 bits (55), Expect = 8.7
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 7/88 (7%)
Query: 12 NNMSPYSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSL 71
++ F P+ + + N ++ H + ++ D L
Sbjct: 9 SDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFD-------ADGVPADTAAKLSHKGL 61
Query: 72 NNMDMAAHQMTYNRPPEYYYDDTTHQQM 99
+ T+ P Y Y H+
Sbjct: 62 LFAAGESFTSTFTEPGTYTYYCEPHRGA 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.436
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,486,645
Number of extensions: 121737
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 21
Length of query: 620
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 529
Effective length of database: 1,158,166
Effective search space: 612669814
Effective search space used: 612669814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)