BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15621
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YEW|C Chain C, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|F Chain F, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|I Chain I, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|L Chain L, Modeling Barmah Forest Virus Structural Proteins
Length = 421
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 49 SPRAMTAATSRAFWRWNHKYILPKK--SNMAGTLHVLFGLS 87
+P+ +T A W++N +Y+ P+ + + G +HV F L+
Sbjct: 221 APKCITYAVDNTVWQYNSQYV-PRSEVTEVKGKIHVPFPLT 260
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 14 VHGPYDPARYYGKPDTP 30
+H PY P + GKPDTP
Sbjct: 167 IHVPYIPEQVIGKPDTP 183
>pdb|1Z5G|A Chain A, Crystal Structure Of Salmonella Typhimurium Apha Protein
pdb|1Z5G|B Chain B, Crystal Structure Of Salmonella Typhimurium Apha Protein
pdb|1Z5G|C Chain C, Crystal Structure Of Salmonella Typhimurium Apha Protein
pdb|1Z5G|D Chain D, Crystal Structure Of Salmonella Typhimurium Apha Protein
pdb|1Z5U|A Chain A, Crystal Structure Of S. Typhimurium Apha Complexed With
Cyclic-Amp
pdb|1Z5U|B Chain B, Crystal Structure Of S. Typhimurium Apha Complexed With
Cyclic-Amp
pdb|1Z5U|C Chain C, Crystal Structure Of S. Typhimurium Apha Complexed With
Cyclic-Amp
pdb|1Z5U|D Chain D, Crystal Structure Of S. Typhimurium Apha Complexed With
Cyclic-Amp
Length = 214
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 40 GSWFGRRNYSPRAMTAATSRAFWR-----WNHKYILPKKSNMAGTLHVLFGLSLFFYV 92
G W G++ YSP + + AFW W+ I + + +HV G S++F
Sbjct: 57 GFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVT 114
>pdb|2AUT|A Chain A, Crystal Structure Of Lys154asn Mutant Of Mature Apha Of S.
Typhimurium
pdb|2AUT|B Chain B, Crystal Structure Of Lys154asn Mutant Of Mature Apha Of S.
Typhimurium
pdb|2AUT|C Chain C, Crystal Structure Of Lys154asn Mutant Of Mature Apha Of S.
Typhimurium
pdb|2AUT|D Chain D, Crystal Structure Of Lys154asn Mutant Of Mature Apha Of S.
Typhimurium
Length = 214
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 40 GSWFGRRNYSPRAMTAATSRAFWR-----WNHKYILPKKSNMAGTLHVLFGLSLFFYV 92
G W G++ YSP + + AFW W+ I + + +HV G S++F
Sbjct: 57 GFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVT 114
>pdb|1Z88|A Chain A, Crystal Structure Of Lys154arg Mutant Of Mature Apha Of S.
Typhimurium
pdb|1Z88|B Chain B, Crystal Structure Of Lys154arg Mutant Of Mature Apha Of S.
Typhimurium
pdb|1Z88|C Chain C, Crystal Structure Of Lys154arg Mutant Of Mature Apha Of S.
Typhimurium
pdb|1Z88|D Chain D, Crystal Structure Of Lys154arg Mutant Of Mature Apha Of S.
Typhimurium
Length = 214
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 40 GSWFGRRNYSPRAMTAATSRAFWR-----WNHKYILPKKSNMAGTLHVLFGLSLFFYV 92
G W G++ YSP + + AFW W+ I + + +HV G S++F
Sbjct: 57 GFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVT 114
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases
With Distinct Activities Highlight The Disulfide
Patterns In The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 42 WFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSN 75
W + + + + T ++F W +LP+K N
Sbjct: 62 WSNKDKFEVKPAASVTLKSFGEWRETVLLPRKRN 95
>pdb|2B82|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate Bound To The Catalytic Metal At
1.2 A Resolution
pdb|2B82|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate Bound To The Catalytic Metal At
1.2 A Resolution
pdb|2B8J|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate At 2 A Resolution
pdb|2B8J|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate At 2 A Resolution
pdb|2HF7|A Chain A, Transition State Analogue Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE (ALUMINIUM FLUORIDE
COMPLEX)
pdb|2HF7|B Chain B, Transition State Analogue Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE (ALUMINIUM FLUORIDE
COMPLEX)
Length = 211
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 40 GSWFGRRNYSPRAMTAATSRAFWR-----WNHKYILPKKSNMAGTLHVLFGLSLFFYVIN 94
G W G++ +SP + + FW W+ I + + +HV G ++FF
Sbjct: 54 GFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGR 113
Query: 95 YP 96
P
Sbjct: 114 SP 115
>pdb|2HEG|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|2HEG|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
Length = 211
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 40 GSWFGRRNYSPRAMTAATSRAFWR-----WNHKYILPKKSNMAGTLHVLFGLSLFFYVIN 94
G W G++ +SP + + FW W+ I + + +HV G ++FF
Sbjct: 54 GFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGR 113
Query: 95 YP 96
P
Sbjct: 114 SP 115
>pdb|1N8N|A Chain A, Crystal Structure Of The Au3+ Complex Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 1.69 A
RESOLUTION
pdb|1N9K|A Chain A, Crystal Structure Of The Bromide Adduct Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 2.2 A
RESOLUTION
pdb|1N9K|B Chain B, Crystal Structure Of The Bromide Adduct Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 2.2 A
RESOLUTION
pdb|1RMQ|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE With Osmiate Mimicking The
Catalytic Intermediate
pdb|1RMQ|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE With Osmiate Mimicking The
Catalytic Intermediate
pdb|1RMT|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|C Chain C, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|D Chain D, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMY|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Deoxycytosine And Phosphate Bound To The Catalytic Metal
pdb|1RMY|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Deoxycytosine And Phosphate Bound To The Catalytic Metal
pdb|2G1A|A Chain A, Crystal Structure Of The Complex Between Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE
pdb|2G1A|B Chain B, Crystal Structure Of The Complex Between Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE
pdb|3CZ4|A Chain A, Native Apha Class B Acid PhosphatasePHOSPHOTRANSFERASE
From E. Coli
Length = 212
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 40 GSWFGRRNYSPRAMTAATSRAFWR-----WNHKYILPKKSNMAGTLHVLFGLSLFFYVIN 94
G W G++ +SP + + FW W+ I + + +HV G ++FF
Sbjct: 55 GFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGR 114
Query: 95 YP 96
P
Sbjct: 115 SP 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,664,241
Number of Sequences: 62578
Number of extensions: 141385
Number of successful extensions: 288
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)