BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15621
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W141|ATPK_DROME Putative ATP synthase subunit f, mitochondrial OS=Drosophila
melanogaster GN=CG4692 PE=1 SV=1
Length = 107
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 74/99 (74%)
Query: 1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
M FGDYPAEY P+VHGPYDPAR+YGK D P GQVKLGE+G+W GRRN +P A+ A SRA
Sbjct: 1 MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGEIGAWLGRRNKTPNAVAGAVSRA 60
Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
+WRW HKY+ PK++ +A + FFY+INY ++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYTKLK 99
>sp|P56134|ATPK_HUMAN ATP synthase subunit f, mitochondrial OS=Homo sapiens GN=ATP5J2
PE=2 SV=3
Length = 94
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
D L +VKLGEL SW R++SP + A R ++R+ +KYI KK +++G VL
Sbjct: 15 DKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYV 74
Query: 88 LFFYVINYPRIK 99
LF Y +Y +K
Sbjct: 75 LFSYSFSYKHLK 86
>sp|Q5R6T5|ATPK_PONAB ATP synthase subunit f, mitochondrial OS=Pongo abelii GN=ATP5J2
PE=3 SV=3
Length = 94
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
D L +VKLGEL SW R++SP + A R ++R+ +KYI KK +++G VL
Sbjct: 15 DKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYV 74
Query: 88 LFFYVINYPRIK 99
LF Y +Y +K
Sbjct: 75 LFSYSFSYKHLK 86
>sp|Q22021|ATPK_CAEEL Putative ATP synthase subunit f, mitochondrial OS=Caenorhabditis
elegans GN=R53.4 PE=3 SV=1
Length = 153
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 4 GDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWR 63
G + + VHGPY RYYGK DT VKLG+L +W RR +P A R WR
Sbjct: 47 GLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWR 106
Query: 64 WNHKYILPKKSNMAGTLHVLFGLSLFFYVINY 95
++ Y N T+ V+F + +N+
Sbjct: 107 VHNLYYSGPVYN--NTVKVIFRFIFAYSFLNW 136
>sp|Q95339|ATPK_PIG ATP synthase subunit f, mitochondrial OS=Sus scrofa GN=ATP5J2
PE=3 SV=4
Length = 88
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
D L +VKLGEL SW R+++P + A R ++R+ +KY+ KK ++AG VL
Sbjct: 9 DRRLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSVAGLSMVLAAYV 68
Query: 88 LFFYVINYPRIK 99
+F Y +Y +K
Sbjct: 69 VFNYCRSYKELK 80
>sp|P56135|ATPK_MOUSE ATP synthase subunit f, mitochondrial OS=Mus musculus GN=Atp5j2
PE=1 SV=3
Length = 88
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
+ L +VKLGEL SW R+++P + A R + R+ +KYI +K +++G VL
Sbjct: 9 EKKLMEVKLGELPSWIMMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYV 68
Query: 88 LFFYVINYPRIK 99
+F Y I+Y +K
Sbjct: 69 VFSYCISYKELK 80
>sp|Q28851|ATPK_BOVIN ATP synthase subunit f, mitochondrial OS=Bos taurus GN=ATP5J2
PE=1 SV=3
Length = 88
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
+ L +VKLGEL SW R+++P + A R ++R+ +KY+ KK ++AG VL
Sbjct: 9 EKKLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSIAGLSMVLAAYV 68
Query: 88 LFFYVINYPRIK 99
Y +Y +K
Sbjct: 69 FLNYCRSYKELK 80
>sp|D3ZAF6|ATPK_RAT ATP synthase subunit f, mitochondrial OS=Rattus norvegicus
GN=Atp5j2 PE=1 SV=1
Length = 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
+ L +VKL EL SW R+++P + A R + R+ +KYI +K +++G VL
Sbjct: 9 EKKLMEVKLRELPSWILMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGINMVLAAYV 68
Query: 88 LFFYVINYPRIK 99
+F Y I+Y +K
Sbjct: 69 VFSYCISYKELK 80
>sp|B3PRZ4|PROB_RHIE6 Glutamate 5-kinase OS=Rhizobium etli (strain CIAT 652) GN=proB PE=3
SV=1
Length = 389
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 25 GKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHV 82
GKPD+PL ++ G SWF +P T T+R W + + AG LHV
Sbjct: 242 GKPDSPLSSIENGARSSWF-----APSG-TPVTARKIW-------IAGQLQPAGELHV 286
>sp|A3LQS0|FCJ1_PICST Formation of crista junctions protein 1 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=FCJ1 PE=3 SV=2
Length = 548
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 9 EYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNH-- 66
E KPQ PY + PD + Q+ LGELG + + TS+ RW
Sbjct: 390 EEKPQSIKPYVDDLFESSPDDEVIQLALGELGPLLSKESTQS---ILTTSQLLTRWEQLV 446
Query: 67 -----KYILPKKSNMAGTL 80
+LP + + G L
Sbjct: 447 PELRSASLLPPNAGLLGHL 465
>sp|Q52733|CCMA_RHIET Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium etli GN=ccmA PE=3 SV=1
Length = 215
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 17 PYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWR 63
P +G ++P GQ GE+ + G RN +T A + FWR
Sbjct: 54 PEKGTVIFGDKESPEGQ-HPGEVSHYLGHRNAMKNELTVAENLDFWR 99
>sp|Q2K396|CCMA_RHIEC Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ccmA
PE=3 SV=2
Length = 215
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 17 PYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWR 63
P +G ++P GQ GE+ + G RN +T A + FWR
Sbjct: 54 PEKGTVIFGDKESPEGQ-HPGEVSHYLGHRNAMKNELTVAENLDFWR 99
>sp|O66624|Y267_AQUAE Uncharacterized protein aq_267 OS=Aquifex aeolicus (strain VF5)
GN=aq_267 PE=4 SV=1
Length = 378
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 44 GRRNYSPRAM-TAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
G + ++ + + T A AFW N+K I +AG L FG++L+F +NY K
Sbjct: 182 GEKLFTAKQVSTLALLLAFWSMNYKLI-----ALAGLLE--FGVALYFLYLNYELFK 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,363,966
Number of Sequences: 539616
Number of extensions: 1696828
Number of successful extensions: 2749
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2740
Number of HSP's gapped (non-prelim): 21
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)