Query psy15621
Match_columns 102
No_of_seqs 100 out of 132
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:23:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10206 WRW: Mitochondrial F1 100.0 8.1E-66 1.7E-70 358.9 6.8 101 1-101 1-101 (104)
2 KOG4092|consensus 100.0 4.7E-54 1E-58 298.2 5.8 101 1-101 1-102 (108)
3 PF10791 F1F0-ATPsyn_F: Mitoch 97.7 2.4E-05 5.2E-10 54.3 2.4 39 61-99 56-95 (95)
4 PF06055 ExoD: Exopolysacchari 57.7 21 0.00045 26.9 4.2 35 38-72 77-113 (187)
5 COG4745 Predicted membrane-bou 35.4 15 0.00033 32.4 0.5 77 9-92 59-155 (556)
6 TIGR03116 cas_csf3 CRISPR-asso 35.3 14 0.00029 29.1 0.2 35 1-35 73-109 (214)
7 PHA02599 dsbA double-stranded 32.0 14 0.00029 25.6 -0.3 8 9-16 10-17 (91)
8 PF02202 Tachykinin: Tachykini 30.5 9.1 0.0002 17.0 -0.9 7 19-25 3-9 (11)
9 PF12616 DUF3775: Protein of u 30.3 55 0.0012 21.5 2.5 24 41-64 25-48 (75)
10 KOG3021|consensus 29.4 30 0.00065 28.4 1.2 60 18-98 233-292 (313)
11 PF09125 COX2-transmemb: Cytoc 26.4 84 0.0018 18.5 2.5 16 78-93 20-35 (38)
12 PF10847 DUF2656: Protein of u 26.3 88 0.0019 23.0 3.1 31 36-66 39-71 (132)
13 KOG2706|consensus 23.4 42 0.00092 28.6 1.1 23 1-23 274-297 (476)
14 cd00072 GYF GYF domain: contai 22.6 46 0.001 20.4 1.0 9 12-20 11-19 (57)
15 PF15171 Spexin: Neuropeptide 22.1 48 0.001 22.7 1.0 13 42-54 5-17 (90)
16 PF02677 DUF208: Uncharacteriz 20.9 40 0.00087 25.6 0.5 6 10-15 30-35 (176)
17 smart00444 GYF Contains conser 20.5 45 0.00097 20.4 0.6 11 11-21 9-19 (56)
18 PF09782 NDUF_B6: NADH:ubiquin 20.2 86 0.0019 23.4 2.1 45 53-97 54-110 (156)
19 KOG4458|consensus 20.2 46 0.001 22.1 0.6 9 12-20 4-12 (78)
No 1
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=100.00 E-value=8.1e-66 Score=358.91 Aligned_cols=101 Identities=57% Similarity=1.067 Sum_probs=100.1
Q ss_pred CCCCCCCCccCCCCcCCCCCCccccCCCCCccceeecCcCccccccCCCHHHHHHHHHHHHHhhhcccccccCCCcchHH
Q psy15621 1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTL 80 (102)
Q Consensus 1 ~~~g~~p~eyn~~~hgpy~p~r~ygk~d~~l~dvKL~ElPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi~~Kk~gi~pi~ 80 (102)
|+|||||+||||+|||||||+||||||||||+||||+|||+||+|||+||+++++||||+||||+||||+|||+||+||+
T Consensus 1 m~~G~~p~eyn~~vhGpy~p~ryYGk~Dt~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~~Kr~gia~~~ 80 (104)
T PF10206_consen 1 MAFGDYPKEYNPKVHGPYDPARYYGKKDTPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYINVKRGGIAPFF 80 (104)
T ss_pred CCcCCCchhhCccccCCCCchhhcCCCCCchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhceecCCcchhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccCccccc
Q psy15621 81 HVLFGLSLFFYVINYPRIKLF 101 (102)
Q Consensus 81 ~v~~g~~v~~Y~~sy~hlK~~ 101 (102)
||++|+|+|||+|||+||||.
T Consensus 81 ~v~~g~~~~~Y~~~Y~~lkh~ 101 (104)
T PF10206_consen 81 QVLAGYMVFSYCINYKHLKHH 101 (104)
T ss_pred HHHHHHHHHHHHHhhcHhhhc
Confidence 999999999999999999985
No 2
>KOG4092|consensus
Probab=100.00 E-value=4.7e-54 Score=298.21 Aligned_cols=101 Identities=41% Similarity=0.733 Sum_probs=98.1
Q ss_pred CCCCCCCCccCCCCcCCCCCCccccCCCCCccceeecCcCccccccCCCHHHHHHHHHHHHHhhhccccc-ccCCCcchH
Q psy15621 1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYIL-PKKSNMAGT 79 (102)
Q Consensus 1 ~~~g~~p~eyn~~~hgpy~p~r~ygk~d~~l~dvKL~ElPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi~-~Kk~gi~pi 79 (102)
|.+|+||+||||+|||||||||||||+|++|+||||||||+|+.|||+||+++.+||||+||||+|||++ +|+++|+||
T Consensus 1 te~G~f~kr~N~~vhgpycpar~yGk~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 1 TEVGLFDKRWNKMVHGPYCPARVYGKKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred CccccchhhhCcCCCCCCCCccccccccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999 566679999
Q ss_pred HHHHHHHHhhhhhhccCccccc
Q psy15621 80 LHVLFGLSLFFYVINYPRIKLF 101 (102)
Q Consensus 80 ~~v~~g~~v~~Y~~sy~hlK~~ 101 (102)
+|+++++|+|||++||.||||+
T Consensus 81 f~~~~ay~~f~yl~~y~~lkh~ 102 (108)
T KOG4092|consen 81 FMVLAAYVLFSYLFSYKHLKHE 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999996
No 3
>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.
Probab=97.70 E-value=2.4e-05 Score=54.25 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=36.5
Q ss_pred HHhhhcccccccCCCcchHHHHHHHHHhhhhhhccC-ccc
Q psy15621 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYP-RIK 99 (102)
Q Consensus 61 ~~ry~~KYi~~Kk~gi~pi~~v~~g~~v~~Y~~sy~-hlK 99 (102)
+=||+.||.+-|+.+.+|+.|++++.+++.|+++|- |||
T Consensus 56 ~grYkakYFdGkNaSgkPllHli~~l~~iGYs~eYyfHLr 95 (95)
T PF10791_consen 56 LGRYKAKYFDGKNASGKPLLHLIGGLFLIGYSIEYYFHLR 95 (95)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHhHhhcC
Confidence 568999999999999999999999999999999987 775
No 4
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=57.72 E-value=21 Score=26.88 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=29.2
Q ss_pred CcCccccccCCCHHHHHHHHHHH--HHhhhccccccc
Q psy15621 38 ELGSWFGRRNYSPRAMTAATSRA--FWRWNHKYILPK 72 (102)
Q Consensus 38 ElPsWl~~r~~sP~~~~~av~Rg--~~ry~~KYi~~K 72 (102)
=||.|+.+|+.+.+.+..++++. +-+|-.++..++
T Consensus 77 WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~rpR 113 (187)
T PF06055_consen 77 WLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLRPR 113 (187)
T ss_pred CCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 48999999999999888888765 677888888776
No 5
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.37 E-value=15 Score=32.40 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=39.4
Q ss_pred ccCCCCcCCCCC------CccccCCCCCc------cceeecCcCccccccCCCHHHHHH-----HH---HHHHHhhhccc
Q psy15621 9 EYKPQVHGPYDP------ARYYGKPDTPL------GQVKLGELGSWFGRRNYSPRAMTA-----AT---SRAFWRWNHKY 68 (102)
Q Consensus 9 eyn~~~hgpy~p------~r~ygk~d~~l------~dvKL~ElPsWl~~r~~sP~~~~~-----av---~Rg~~ry~~KY 68 (102)
+|||.+|||+-+ -..-|-.|-.. ..+ |.-|-+||-|+...-.+++. |+ -=-|-|+.++=
T Consensus 59 ~YrPi~HGPfL~hvn~avF~~lGasDataRlvvAv~G~-llpL~awL~R~rL~d~evlal~~LLA~sPvlVYYSRFmR~D 137 (556)
T COG4745 59 SYRPIYHGPFLYHVNYAVFGLLGASDATARLVVAVTGV-LLPLTAWLYRTRLGDKEVLALATLLAFSPVLVYYSRFMRND 137 (556)
T ss_pred eecccccCchhhhhhhhhhhhcccchhhhhhhHHHhhh-HHHHHHHHHHHhccchHHHHHHHHHhcChhhhhHHHHHhhh
Confidence 799999999754 34445555321 111 23344676665444333221 11 11234444433
Q ss_pred ccccCCCcchHHHHHHHHHhhhhh
Q psy15621 69 ILPKKSNMAGTLHVLFGLSLFFYV 92 (102)
Q Consensus 69 i~~Kk~gi~pi~~v~~g~~v~~Y~ 92 (102)
+. --.+|+++-++++.|+
T Consensus 138 l~------la~ftl~aVg~~vR~l 155 (556)
T COG4745 138 LL------LAAFTLLAVGFAVRYL 155 (556)
T ss_pred HH------HHHHHHHHHHHHHHHh
Confidence 32 2566777777777664
No 6
>TIGR03116 cas_csf3 CRISPR-associated protein, Csf3 family. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf3 (CRISPR/cas Subtype as in A. ferrooxidans protein 3), as it lies third closest to the repeats.
Probab=35.30 E-value=14 Score=29.09 Aligned_cols=35 Identities=34% Similarity=0.681 Sum_probs=26.9
Q ss_pred CCCCCCCCccCCCCcCCC-CCCcccc-CCCCCcccee
Q psy15621 1 MGFGDYPAEYKPQVHGPY-DPARYYG-KPDTPLGQVK 35 (102)
Q Consensus 1 ~~~g~~p~eyn~~~hgpy-~p~r~yg-k~d~~l~dvK 35 (102)
.+|++||+.|--+--=|| ||+|+|| +-|+-+.+-|
T Consensus 73 ~~f~~~~~~~~takt~p~~d~~r~i~d~~~~g~~~a~ 109 (214)
T TIGR03116 73 LAFLPYPKRYETAKTLPFTDPSRFIGDDLDRGLWQAR 109 (214)
T ss_pred eecCccceeeeecccCCccchhhhhccchhhhhhhhc
Confidence 378999999988888888 6899998 6665555443
No 7
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=32.02 E-value=14 Score=25.62 Aligned_cols=8 Identities=63% Similarity=1.369 Sum_probs=6.4
Q ss_pred ccCCCCcC
Q psy15621 9 EYKPQVHG 16 (102)
Q Consensus 9 eyn~~~hg 16 (102)
|+||.|||
T Consensus 10 efn~~vhg 17 (91)
T PHA02599 10 EFNPAVHG 17 (91)
T ss_pred hcCchhhH
Confidence 67888887
No 8
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=30.54 E-value=9.1 Score=17.03 Aligned_cols=7 Identities=43% Similarity=1.369 Sum_probs=5.5
Q ss_pred CCCcccc
Q psy15621 19 DPARYYG 25 (102)
Q Consensus 19 ~p~r~yg 25 (102)
+|.+|||
T Consensus 3 ~pd~F~G 9 (11)
T PF02202_consen 3 KPDQFYG 9 (11)
T ss_dssp CHHHHCC
T ss_pred Cccccee
Confidence 5778887
No 9
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=30.31 E-value=55 Score=21.50 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.2
Q ss_pred ccccccCCCHHHHHHHHHHHHHhh
Q psy15621 41 SWFGRRNYSPRAMTAATSRAFWRW 64 (102)
Q Consensus 41 sWl~~r~~sP~~~~~av~Rg~~ry 64 (102)
.||+|-|++|...-.|+..+.-++
T Consensus 25 mwiGRGd~~~eew~~a~~~A~~~~ 48 (75)
T PF12616_consen 25 MWIGRGDFEAEEWEEAVAEARERA 48 (75)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhc
Confidence 499999999999999999998887
No 10
>KOG3021|consensus
Probab=29.37 E-value=30 Score=28.40 Aligned_cols=60 Identities=27% Similarity=0.535 Sum_probs=41.2
Q ss_pred CCCCccccCCCCCccceeecCcCccccccCCCHHHHHHHHHHHHHhhhcccccccCCCcchHHHHHHHHHhhhhhhccCc
Q psy15621 18 YDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPR 97 (102)
Q Consensus 18 y~p~r~ygk~d~~l~dvKL~ElPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi~~Kk~gi~pi~~v~~g~~v~~Y~~sy~h 97 (102)
||||.|||-+|-.| -...+.+.+.+.|..=+||=| +| .+|+-|=+.-|-++-|+=.+.|
T Consensus 233 fDPasfYgh~Efef-----------------gia~mfGgf~~sF~naY~k~i-pk---a~G~eqR~~LYqLyhyLNHwNh 291 (313)
T KOG3021|consen 233 FDPASFYGHSEFEF-----------------GIAKMFGGFTQSFYNAYHKKI-PK---APGFEQRLLLYQLYHYLNHWNH 291 (313)
T ss_pred eCchhhcCCcHHHH-----------------HHHHHhCCCcHHHHHHHhhhc-CC---CCcHHHHHHHHHHHHHhhhhhh
Confidence 89999999988543 334566666666665555433 22 6788888888988888755555
Q ss_pred c
Q psy15621 98 I 98 (102)
Q Consensus 98 l 98 (102)
+
T Consensus 292 F 292 (313)
T KOG3021|consen 292 F 292 (313)
T ss_pred h
Confidence 4
No 11
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=26.37 E-value=84 Score=18.48 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhhhhhh
Q psy15621 78 GTLHVLFGLSLFFYVI 93 (102)
Q Consensus 78 pi~~v~~g~~v~~Y~~ 93 (102)
+++|+++...+.+|.+
T Consensus 20 ~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 20 ALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999888888865
No 12
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=26.27 E-value=88 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=24.7
Q ss_pred ecCcCccccc--cCCCHHHHHHHHHHHHHhhhc
Q psy15621 36 LGELGSWFGR--RNYSPRAMTAATSRAFWRWNH 66 (102)
Q Consensus 36 L~ElPsWl~~--r~~sP~~~~~av~Rg~~ry~~ 66 (102)
+.+=|-|+-. .++||++|...+.|+|-++-+
T Consensus 39 ~l~hPHW~v~i~s~lsp~~~~~~~v~aw~~~R~ 71 (132)
T PF10847_consen 39 ALNHPHWMVEIESDLSPDEMAEELVRAWKQYRN 71 (132)
T ss_pred cccCCceEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 3344777655 789999999999999988773
No 13
>KOG2706|consensus
Probab=23.38 E-value=42 Score=28.63 Aligned_cols=23 Identities=43% Similarity=0.973 Sum_probs=17.8
Q ss_pred CCCCCCCCccCCCC-cCCCCCCcc
Q psy15621 1 MGFGDYPAEYKPQV-HGPYDPARY 23 (102)
Q Consensus 1 ~~~g~~p~eyn~~~-hgpy~p~r~ 23 (102)
.|||-||+|=||++ -||=|--.+
T Consensus 274 aGfGaYP~~SdPk~geGPr~~~a~ 297 (476)
T KOG2706|consen 274 AGFGAYPAASDPKIGEGPRDLNAF 297 (476)
T ss_pred hccccccccCCCccCcCchhhhhh
Confidence 37999999999997 588664433
No 14
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=22.64 E-value=46 Score=20.39 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=7.4
Q ss_pred CCCcCCCCC
Q psy15621 12 PQVHGPYDP 20 (102)
Q Consensus 12 ~~~hgpy~p 20 (102)
-+|||||..
T Consensus 11 g~vqGPF~~ 19 (57)
T cd00072 11 GEIQGPFSA 19 (57)
T ss_pred CCCcCCcCH
Confidence 679999975
No 15
>PF15171 Spexin: Neuropeptide secretory protein family, NPQ, spexin
Probab=22.07 E-value=48 Score=22.75 Aligned_cols=13 Identities=54% Similarity=0.994 Sum_probs=10.9
Q ss_pred cccccCCCHHHHH
Q psy15621 42 WFGRRNYSPRAMT 54 (102)
Q Consensus 42 Wl~~r~~sP~~~~ 54 (102)
-+.|||+||++|+
T Consensus 5 ~ferRNWTPQAML 17 (90)
T PF15171_consen 5 LFERRNWTPQAML 17 (90)
T ss_pred hhhhcCCCHHHHH
Confidence 3678999999986
No 16
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.95 E-value=40 Score=25.56 Aligned_cols=6 Identities=50% Similarity=1.442 Sum_probs=4.6
Q ss_pred cCCCCc
Q psy15621 10 YKPQVH 15 (102)
Q Consensus 10 yn~~~h 15 (102)
|||+||
T Consensus 30 yNPNIh 35 (176)
T PF02677_consen 30 YNPNIH 35 (176)
T ss_pred eCCCCC
Confidence 677777
No 17
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=20.51 E-value=45 Score=20.38 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=8.2
Q ss_pred CCCCcCCCCCC
Q psy15621 11 KPQVHGPYDPA 21 (102)
Q Consensus 11 n~~~hgpy~p~ 21 (102)
+-+|||||..+
T Consensus 9 ~~~iqGPf~~~ 19 (56)
T smart00444 9 DGEIQGPFTAS 19 (56)
T ss_pred CCCEeCCcCHH
Confidence 56799999753
No 18
>PF09782 NDUF_B6: NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; InterPro: IPR019174 The NADH dehydrogenase [ubiquinone] complex performs the first stage of electron transfer from NADH to the respiratory chain. This entry represents an accessory subunit that is not thought to be involved in catalysis [].
Probab=20.24 E-value=86 Score=23.44 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcc---cc---------cccCCCcchHHHHHHHHHhhhhhhccCc
Q psy15621 53 MTAATSRAFWRWNHK---YI---------LPKKSNMAGTLHVLFGLSLFFYVINYPR 97 (102)
Q Consensus 53 ~~~av~Rg~~ry~~K---Yi---------~~Kk~gi~pi~~v~~g~~v~~Y~~sy~h 97 (102)
..+.|+|.|-+..++ ++ .+=|.+|.-++++++..-++-|.+-|-.
T Consensus 54 ~~nPirrfyr~pl~~l~~~L~p~~g~~~~~~~R~~i~k~~~~li~~w~~~Yy~KYn~ 110 (156)
T PF09782_consen 54 RMNPIRRFYRKPLDKLQNYLKPLWGEYYAKAYRHGIFKFTMVLIPAWIIHYYFKYNV 110 (156)
T ss_pred hcCHHHHHHHHHHHHHHHhccCchhheeeeeeeehHHHHHHHHHHHHHHHHHHhhcc
Confidence 344577777666665 11 2336788889999999999999887754
No 19
>KOG4458|consensus
Probab=20.16 E-value=46 Score=22.09 Aligned_cols=9 Identities=56% Similarity=1.084 Sum_probs=6.3
Q ss_pred CCCcCCCCC
Q psy15621 12 PQVHGPYDP 20 (102)
Q Consensus 12 ~~~hgpy~p 20 (102)
.+-|||||-
T Consensus 4 k~k~~pydi 12 (78)
T KOG4458|consen 4 KKKHGPYDI 12 (78)
T ss_pred ccccCCcce
Confidence 356888874
Done!