Query psy15621
Match_columns 102
No_of_seqs 100 out of 132
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:24:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl3_A Putative glucoamylase; 32.5 35 0.0012 27.6 3.4 34 39-72 4-37 (424)
2 3u7d_B Protein HEG homolog 1; 30.2 15 0.00051 19.1 0.6 10 5-14 6-15 (26)
3 1jy1_A TDP1, tyrosyl-DNA phosp 20.3 58 0.002 26.5 2.6 32 15-46 427-460 (464)
4 2vgp_C Inner centromere protei 19.1 21 0.00073 20.4 -0.2 15 15-30 20-34 (43)
5 1syx_B CD2BP2, CD2 antigen cyt 17.4 17 0.00058 23.7 -1.0 9 12-20 38-46 (86)
6 1bm4_A Protein (moloney murine 16.5 77 0.0026 17.2 1.7 22 44-65 9-30 (32)
7 1uj8_A ORF3, hypothetical prot 13.3 1E+02 0.0035 19.7 1.9 27 36-62 47-73 (77)
8 1wz4_A Major surface antigen; 12.4 66 0.0022 16.5 0.6 14 8-21 8-21 (26)
9 2rre_A NVL2, putative uncharac 12.2 31 0.0011 22.2 -0.8 12 6-17 47-58 (78)
10 4hur_A Virginiamycin A acetylt 12.1 89 0.003 21.9 1.5 31 39-69 165-195 (220)
No 1
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=32.48 E-value=35 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=24.5
Q ss_pred cCccccccCCCHHHHHHHHHHHHHhhhccccccc
Q psy15621 39 LGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPK 72 (102)
Q Consensus 39 lPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi~~K 72 (102)
+|+-.+.++.|-.+++..++|..|||...+.++.
T Consensus 4 pp~~~~~~~lsD~~lL~~i~r~t~~yF~~~~~p~ 37 (424)
T 4gl3_A 4 PPSGVTEKQLSDDELMTLVQKQTFRYFWDFAHPE 37 (424)
T ss_dssp ------CCCCCHHHHHHHHHHHHHTTTTTTSCTT
T ss_pred CCCCccccCCCHHHHHHHHHHHHHHHHHhccCCc
Confidence 3555566778889999999999999998888664
No 2
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=30.22 E-value=15 Score=19.05 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.6
Q ss_pred CCCCccCCCC
Q psy15621 5 DYPAEYKPQV 14 (102)
Q Consensus 5 ~~p~eyn~~~ 14 (102)
-||..|||..
T Consensus 6 iypgqynpsf 15 (26)
T 3u7d_B 6 IFPGQYNPSF 15 (26)
T ss_pred cccCccCccc
Confidence 3888999864
No 3
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=20.30 E-value=58 Score=26.48 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=26.1
Q ss_pred cCCCC-CCccccCCCCC-ccceeecCcCcccccc
Q psy15621 15 HGPYD-PARYYGKPDTP-LGQVKLGELGSWFGRR 46 (102)
Q Consensus 15 hgpy~-p~r~ygk~d~~-l~dvKL~ElPsWl~~r 46 (102)
-=||| |..=||..|+| ..|+.=.|+|-|++..
T Consensus 427 ~vPy~lP~~~Y~~~D~Pw~~~~~~~~~~D~~G~~ 460 (464)
T 1jy1_A 427 PVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNM 460 (464)
T ss_dssp CCSSCSSCCBCCTTCCBCCTTSCBCSSCCTTSCC
T ss_pred eecCCCCCcCCCCCCCCeeCCCCCCCcccCCcCc
Confidence 34888 88999999999 6788888888888764
No 4
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=19.07 E-value=21 Score=20.42 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=12.5
Q ss_pred cCCCCCCccccCCCCC
Q psy15621 15 HGPYDPARYYGKPDTP 30 (102)
Q Consensus 15 hgpy~p~r~ygk~d~~ 30 (102)
|+| |+.+++|.-+++
T Consensus 20 ~p~-D~d~iFG~I~pp 34 (43)
T 2vgp_C 20 KPI-DVDRMYGTIDSP 34 (43)
T ss_dssp SCC-CHHHHTTTSCCC
T ss_pred cCC-CHHHHcCCCCCc
Confidence 567 999999987776
No 5
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=17.44 E-value=17 Score=23.66 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=7.2
Q ss_pred CCCcCCCCC
Q psy15621 12 PQVHGPYDP 20 (102)
Q Consensus 12 ~~~hgpy~p 20 (102)
..|||||.-
T Consensus 38 ~~i~GPfs~ 46 (86)
T 1syx_B 38 AELYGPFTS 46 (86)
T ss_dssp SCCEEEEEH
T ss_pred CcccCCcCH
Confidence 379999975
No 6
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=16.46 E-value=77 Score=17.20 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=18.0
Q ss_pred cccCCCHHHHHHHHHHHHHhhh
Q psy15621 44 GRRNYSPRAMTAATSRAFWRWN 65 (102)
Q Consensus 44 ~~r~~sP~~~~~av~Rg~~ry~ 65 (102)
...+-||..++..+..+|-+|.
T Consensus 9 Qg~~EsPs~FlerL~eayR~yT 30 (32)
T 1bm4_A 9 QGPNESPSAFLERLKEAYRRYT 30 (32)
T ss_dssp TTGGGHHHHHHHHHHHHHHHTS
T ss_pred hCCCCChHHHHHHHHHHHHhcC
Confidence 3456789999999999998873
No 7
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=13.31 E-value=1e+02 Score=19.73 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=20.6
Q ss_pred ecCcCccccccCCCHHHHHHHHHHHHH
Q psy15621 36 LGELGSWFGRRNYSPRAMTAATSRAFW 62 (102)
Q Consensus 36 L~ElPsWl~~r~~sP~~~~~av~Rg~~ 62 (102)
+.+||.-=.-.+.+-.+++.|||-+|.
T Consensus 47 V~~L~~FdDdp~~~nEkiLEAIQ~aWi 73 (77)
T 1uj8_A 47 ICDLEDFDDDPQASNEKILEAILLVWL 73 (77)
T ss_dssp HHTSTTBCSCGGGCCHHHHHHHHHHHH
T ss_pred HHhCCCcCCCcccccHHHHHHHHHHHH
Confidence 456665545567788899999999986
No 8
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=12.37 E-value=66 Score=16.54 Aligned_cols=14 Identities=50% Similarity=0.733 Sum_probs=10.6
Q ss_pred CccCCCCcCCCCCC
Q psy15621 8 AEYKPQVHGPYDPA 21 (102)
Q Consensus 8 ~eyn~~~hgpy~p~ 21 (102)
+-=||+|-|.|.||
T Consensus 8 ~l~dp~vrgly~pA 21 (26)
T 1wz4_A 8 ALLDPRVRGLYFPA 21 (26)
T ss_dssp TSSSTTCGGGSCCS
T ss_pred cccCCCccccccCC
Confidence 33468889999887
No 9
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=12.20 E-value=31 Score=22.15 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=6.4
Q ss_pred CCCccCCCCcCC
Q psy15621 6 YPAEYKPQVHGP 17 (102)
Q Consensus 6 ~p~eyn~~~hgp 17 (102)
||.||+.+.+.|
T Consensus 47 Y~~eY~Rrk~~~ 58 (78)
T 2rre_A 47 YSVDYGRRKRNA 58 (78)
T ss_dssp TTTTTCSSCHHH
T ss_pred hhhhcccccccc
Confidence 555666555443
No 10
>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A
Probab=12.10 E-value=89 Score=21.91 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.8
Q ss_pred cCccccccCCCHHHHHHHHHHHHHhhhcccc
Q psy15621 39 LGSWFGRRNYSPRAMTAATSRAFWRWNHKYI 69 (102)
Q Consensus 39 lPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi 69 (102)
.|+-+.++.|+...+....+-.||.|....+
T Consensus 165 ~PAk~ir~r~~~~~i~~l~~~~ww~~~~~~i 195 (220)
T 4hur_A 165 NPLKFIRKRFSDGVIEEWLALQWWNLDMKII 195 (220)
T ss_dssp TTTEEEEESSCHHHHHHHHHHCGGGSCHHHH
T ss_pred CCCEeehhcCCHHHHHHHHHhhhcCCCHHHH
Confidence 4666667679999999999999999986554
Done!