Query psy15621
Match_columns 102
No_of_seqs 100 out of 132
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 17:24:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1syxb1 d.76.1.1 (B:25-86) GYF 32.5 2.4 0.00017 24.6 -1.3 8 13-20 15-22 (62)
2 d1jy1a2 d.136.1.3 (A:351-608) 28.1 17 0.0012 25.7 2.6 29 17-45 223-253 (258)
3 d2qklb1 a.242.1.1 (B:2-91) mRN 17.8 75 0.0055 19.1 3.9 39 49-87 29-71 (90)
4 d1v5da_ a.102.1.2 (A:) Chitosa 15.7 1.6E+02 0.012 21.0 6.0 26 47-72 21-46 (386)
5 d1uj8a1 a.159.5.1 (A:13-76) Ir 15.5 40 0.0029 19.5 1.9 27 36-62 35-61 (64)
6 d1r9wa_ d.89.1.2 (A:) Replicat 11.0 18 0.0013 24.0 -0.8 14 33-46 128-141 (145)
7 d1f08a_ d.89.1.2 (A:) Replicat 10.8 18 0.0013 24.1 -0.8 15 32-46 130-144 (148)
8 d1ud2a2 c.1.8.1 (A:1-390) Bact 9.8 1.1E+02 0.0082 19.6 3.1 7 18-24 56-62 (390)
9 d2f9ca1 b.81.1.7 (A:3-322) Hyp 9.6 37 0.0027 23.5 0.5 19 27-45 29-47 (320)
10 d1r12a_ c.23.14.3 (A:) ADP rib 9.3 26 0.0019 25.1 -0.5 30 16-45 167-196 (251)
No 1
>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.54 E-value=2.4 Score=24.61 Aligned_cols=8 Identities=25% Similarity=0.874 Sum_probs=6.6
Q ss_pred CCcCCCCC
Q psy15621 13 QVHGPYDP 20 (102)
Q Consensus 13 ~~hgpy~p 20 (102)
.|||||.-
T Consensus 15 ~iqGPf~~ 22 (62)
T d1syxb1 15 ELYGPFTS 22 (62)
T ss_dssp CCEEEEEH
T ss_pred CCcCCcCH
Confidence 69999974
No 2
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.07 E-value=17 Score=25.75 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=24.3
Q ss_pred CCC-CCccccCCCCC-ccceeecCcCccccc
Q psy15621 17 PYD-PARYYGKPDTP-LGQVKLGELGSWFGR 45 (102)
Q Consensus 17 py~-p~r~ygk~d~~-l~dvKL~ElPsWl~~ 45 (102)
||| |..=||..|+| ..|+.=.|+|-|++.
T Consensus 223 Py~lP~~~Y~~~D~PW~~~~~~~e~pD~~G~ 253 (258)
T d1jy1a2 223 PYDLPPELYGSKDRPWIWNIPYVKAPDTHGN 253 (258)
T ss_dssp SSCSSCCBCCTTCCBCCTTSCBCSSCCTTSC
T ss_pred cCCCCCcCCCCCCcCeeccCCcccCCCCCCC
Confidence 676 77788999999 678888899999876
No 3
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=17.83 E-value=75 Score=19.09 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHhhhcccc----cccCCCcchHHHHHHHHH
Q psy15621 49 SPRAMTAATSRAFWRWNHKYI----LPKKSNMAGTLHVLFGLS 87 (102)
Q Consensus 49 sP~~~~~av~Rg~~ry~~KYi----~~Kk~gi~pi~~v~~g~~ 87 (102)
|+.++.-.|..|+|-|--.|. ..++.|+..+++.++-.|
T Consensus 29 ~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~c 71 (90)
T d2qklb1 29 SVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHC 71 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHC
Confidence 588999999999999887664 333667777776665544
No 4
>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]}
Probab=15.68 E-value=1.6e+02 Score=20.99 Aligned_cols=26 Identities=15% Similarity=0.440 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHhhhccccccc
Q psy15621 47 NYSPRAMTAATSRAFWRWNHKYILPK 72 (102)
Q Consensus 47 ~~sP~~~~~av~Rg~~ry~~KYi~~K 72 (102)
..|-..+-..+++.|..|..+|+...
T Consensus 21 ~~~q~~~~~~~~~~y~~wk~~yl~~~ 46 (386)
T d1v5da_ 21 HVTQESLNASVRSYYDNWKKKYLKND 46 (386)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHEECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666888899999999999999644
No 5
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=15.53 E-value=40 Score=19.46 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=20.6
Q ss_pred ecCcCccccccCCCHHHHHHHHHHHHH
Q psy15621 36 LGELGSWFGRRNYSPRAMTAATSRAFW 62 (102)
Q Consensus 36 L~ElPsWl~~r~~sP~~~~~av~Rg~~ 62 (102)
+.+||.-=.-.+.|-.+++.|+|-+|.
T Consensus 35 V~~L~~F~Ddp~~~nEkiLEAIQmaWi 61 (64)
T d1uj8a1 35 ICDLEDFDDDPQASNEKILEAILLVWL 61 (64)
T ss_dssp HHTSTTBCSCGGGCCHHHHHHHHHHHH
T ss_pred HhcCCCCCCCcccccHHHHHHHHHHHh
Confidence 456666555567788899999999985
No 6
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=11.03 E-value=18 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.1
Q ss_pred ceeecCcCcccccc
Q psy15621 33 QVKLGELGSWFGRR 46 (102)
Q Consensus 33 dvKL~ElPsWl~~r 46 (102)
...-||+|.||.++
T Consensus 128 ~~~~G~~PeWI~~Q 141 (145)
T d1r9wa_ 128 SEVMGDTPEWIQRL 141 (145)
T ss_dssp SEEEECCCHHHHHH
T ss_pred ceEECCCcHHHHHh
Confidence 34679999999875
No 7
>d1f08a_ d.89.1.2 (A:) Replication initiation protein E1 {Bovine papillomavirus [TaxId: 10571]}
Probab=10.78 E-value=18 Score=24.06 Aligned_cols=15 Identities=27% Similarity=0.621 Sum_probs=12.0
Q ss_pred cceeecCcCcccccc
Q psy15621 32 GQVKLGELGSWFGRR 46 (102)
Q Consensus 32 ~dvKL~ElPsWl~~r 46 (102)
....-||+|.||.++
T Consensus 130 ~~~~~G~~PeWI~~Q 144 (148)
T d1f08a_ 130 ATLKHGALPEWIRAQ 144 (148)
T ss_dssp SCEEEECCCHHHHHH
T ss_pred cceEECCCcHHHHHh
Confidence 445689999999875
No 8
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=9.77 E-value=1.1e+02 Score=19.62 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=5.5
Q ss_pred CCCCccc
Q psy15621 18 YDPARYY 24 (102)
Q Consensus 18 y~p~r~y 24 (102)
|+|..||
T Consensus 56 Y~~~d~~ 62 (390)
T d1ud2a2 56 YGAYDLY 62 (390)
T ss_dssp SSEEETT
T ss_pred CCccCCc
Confidence 7887777
No 9
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}
Probab=9.61 E-value=37 Score=23.45 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=16.0
Q ss_pred CCCCccceeecCcCccccc
Q psy15621 27 PDTPLGQVKLGELGSWFGR 45 (102)
Q Consensus 27 ~d~~l~dvKL~ElPsWl~~ 45 (102)
.-+-|.|||=++|+.|+..
T Consensus 29 a~~~~~~~~~~~~gg~~~~ 47 (320)
T d2f9ca1 29 AVTDFNDVKAGTSGGWVDA 47 (320)
T ss_dssp ECSCCSSSCTTCEEEEESS
T ss_pred EeecccccccCCCCceeec
Confidence 3455899999999999987
No 10
>d1r12a_ c.23.14.3 (A:) ADP ribosyl cyclase {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=9.32 E-value=26 Score=25.09 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.7
Q ss_pred CCCCCCccccCCCCCccceeecCcCccccc
Q psy15621 16 GPYDPARYYGKPDTPLGQVKLGELGSWFGR 45 (102)
Q Consensus 16 gpy~p~r~ygk~d~~l~dvKL~ElPsWl~~ 45 (102)
|||++.++.|+-|-|-++=|+.+|=.|+..
T Consensus 167 ~af~~~s~Fg~vElp~L~~kV~~l~i~vvh 196 (251)
T d1r12a_ 167 PAYRPDSFFGKYELPNLTNKVTRVKVIVLH 196 (251)
T ss_dssp CSSCTTSHHHHTTGGGCCTTEEEEEEEEEC
T ss_pred CCcCCCCeeeeEeccccCcceeEEEEEEEc
Confidence 899999999999999555699999999875
Done!