RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15621
(102 letters)
>gnl|CDD|150822 pfam10206, WRW, Mitochondrial F1F0-ATP synthase, subunit f. This
is a family of small proteins of approximately 110
amino acids, which are highly conserved from nematodes
to humans. Some members of the family have been
annotated in Swiss-Prot as being the f subunit of
mitochondrial F1F0-ATP synthase but this could not be
confirmed. The sequence has a well-conserved WRW motif.
The exact function of the protein is not known.
Length = 104
Score = 143 bits (362), Expect = 4e-46
Identities = 65/99 (65%), Positives = 77/99 (77%)
Query: 1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
M GDYPAEY P+VHGPYDPARYYGKPDTPLG VKLGELG+WFGRR+ SP A+ A SRA
Sbjct: 1 MAIGDYPAEYNPKVHGPYDPARYYGKPDTPLGDVKLGELGAWFGRRDKSPSAIAGAFSRA 60
Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
+WRW +KY+L K+ +A VL G +FFY INY ++K
Sbjct: 61 YWRWQNKYVLVKRGGIAPIFQVLVGYMVFFYAINYDKLK 99
>gnl|CDD|234214 TIGR03445, mycothiol_MshB,
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-
glucopyranoside deacetylase. Members of this protein
family are
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-
glucopyranoside deacetylase, also called
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-
glucopyranoside deacetylase, the MshB protein of
mycothiol biosynthesis in Mycobacterium tuberculosis and
related species.
Length = 284
Score = 26.7 bits (59), Expect = 2.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 9 EYKPQVHGPYDPARYYGKPD 28
E +P V YDP YG PD
Sbjct: 121 EVRPHVVVTYDPNGGYGHPD 140
>gnl|CDD|222867 PHA02546, 47, endonuclease subunit; Provisional.
Length = 340
Score = 25.7 bits (57), Expect = 4.4
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 39 LGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFG 85
LG F R +A+T T + + I TLHVL G
Sbjct: 46 LGDTFDVR----KAITQNT----MNFVREKIFDLLKEAGITLHVLVG 84
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for
plasmid replication.
Length = 279
Score = 25.8 bits (57), Expect = 4.8
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 52 AMTAATSRAFWRWNHKYILPKKSNMAG 78
AM A+ R Y L K G
Sbjct: 31 AMKKASEIDVARHELNYTLLPKDPKTG 57
>gnl|CDD|202351 pfam02690, Na_Pi_cotrans, Na+/Pi-cotransporter. This is a family
of mainly mammalian type II renal Na+/Pi-cotransporters
with other related sequences from lower eukaryotes and
bacteria some of which are also Na+/Pi-cotransporters.
In the kidney the type II renal Na+/Pi-cotransporters
protein allows re-absorption of filtered Pi in the
proximal tubule.
Length = 137
Score = 24.8 bits (55), Expect = 7.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 69 ILPKKSNMAGTLHVLFGLSLFFYVINY 95
L K+ + G +L GL L F ++
Sbjct: 107 FLFKRKRLKGIGRILLGLGLLFLGLDL 133
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp. strain
PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria, where
myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed to
myxoxanthophyll [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 492
Score = 25.4 bits (56), Expect = 7.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 38 ELGSWFGRRNYSPRAMTAATSRAFWRW 64
LG +F + + AT R F RW
Sbjct: 403 RLGHYFDLLEENWVHVELATPRTFERW 429
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 25.2 bits (55), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 24 YGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRW 64
+ PDTP GQ K L S + YSP +A ++++ W
Sbjct: 79 FIDPDTPFGQKKR--LSSQMA-KQYSP----SAVEKSWYAW 112
>gnl|CDD|203953 pfam08468, MTS_N, Methyltransferase small domain N-terminal.
This domain is found to the N-terminus of the
methyltransferase small domain (pfam05175) in bacterial
proteins.
Length = 155
Score = 24.9 bits (55), Expect = 8.6
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 54 TAATSRAFWRWNHKYILPKKSNMAGTLHVLF 84
T +S W W+ Y L +++ +
Sbjct: 32 THCSSVHVWTWHFGYQLQLQAHNNIRFYFGV 62
>gnl|CDD|220183 pfam09331, DUF1985, Domain of unknown function (DUF1985).
Members of this family of functionally uncharacterized
domains are found in a set of Arabidopsis thaliana
hypothetical proteins.
Length = 142
Score = 24.7 bits (54), Expect = 9.4
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 3 FGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPR 51
G YP E K + G ++ K V + ++ ++
Sbjct: 38 CGKYPKEKKVKKKGTLKKGPFWNKLFGLKKDVTVDDVEEKLKKKKKKDS 86
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 24.8 bits (55), Expect = 9.6
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 45 RRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY 102
R ++SP A+ A + ++ + FGL + P + L
Sbjct: 162 RHSFSPLALLTALVASIA-----------ADFV--SRLFFGLGPVLSIPPLPALPLKS 206
>gnl|CDD|225532 COG2985, COG2985, Predicted permease [General function prediction
only].
Length = 544
Score = 25.1 bits (55), Expect = 9.7
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 77 AGTLHVLFGLSLFFYVI 93
LH GL LF Y I
Sbjct: 56 TDMLHFELGLILFVYTI 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.143 0.482
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,458,675
Number of extensions: 447307
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 24
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)