RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15621
         (102 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.008
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 9/38 (23%)

Query: 52   AMTAATSRAFWR-WNHKYILPKKSNMAGTLHVLFGLSL 88
            A+T    +A +     K ++P  +  AG  H     SL
Sbjct: 1735 ALTL-MEKAAFEDLKSKGLIPADATFAG--H-----SL 1764


>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
           cytochrome BC1, membrane protein, heme protein, rieske
           iron protein, cytochrome B, complex III; HET: BHG HEM
           HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
           d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
           1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
           2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
           2bcc_A* ...
          Length = 446

 Score = 25.6 bits (57), Expect = 3.0
 Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 6/41 (14%)

Query: 3   FGDYPAEYKPQVHGPYDPARYYG------KPDTPLGQVKLG 37
           F      Y         P R+ G      +   PL  V + 
Sbjct: 216 FSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIA 256


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,677,953
Number of extensions: 85112
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 11
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)