RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15621
         (102 letters)



>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator
          RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
          Length = 121

 Score = 23.0 bits (49), Expect = 6.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 39 LGSWFGRRNYSPRAMTAATSRAFW 62
          L     R  +  RA     S+AFW
Sbjct: 57 LIRTLMRTGWQLRAGIDVESKAFW 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 424,677
Number of extensions: 17656
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)