BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15622
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTML 68
I++ERP+V+WSD+A AK+ L+EAVILP++ P F R PW+G+L+ GPPGTGK+ L
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183
Query: 69 AKAVAIVYNQ 78
AKAVA N
Sbjct: 184 AKAVATEANN 193
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG 140
GA+N PW +D A RR EKRIY+PLP + R + RL L + ++ D + + + +G
Sbjct: 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG 335
Query: 141 YSASDIVVVCRDAAFMAMRAA--------IRGKSVPQIQAI------------------- 173
YS +DI ++ RDA +R +RG S I
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMT 395
Query: 174 ----PMAQLKRPVTKA-DFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
P +L PV D +++ + TV D+ + +++ E FG
Sbjct: 396 WMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTML 68
I++ERP+V+WSD+A AK+ L+EAVILP++ P F R PW+G+L+ GPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 69 AKAVAIVYNQ 78
AKAVA N
Sbjct: 62 AKAVATEANN 71
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-DLASDLDLELVSDQLEG 140
GA+N PW +D A RR EKRIY+PLP R + +L L + ++ D + + +G
Sbjct: 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDG 213
Query: 141 YSASDIVVVCRDAAFMAMRAA--------IRGKSVPQIQ----------------AIPMA 176
YS +DI ++ RDA +R +RG S AI M
Sbjct: 214 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMT 273
Query: 177 QLKRP--------VTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
+ P V+ +D +++ + TV D+ + +++ E FG
Sbjct: 274 WMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQEL-LRLILRQVDLASDLDLELVSDQLEG 140
GA+N P ID+A RRL KR+Y+PLP +S R+++ + L+ ++ S+ ++E + Q +
Sbjct: 226 GATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 285
Query: 141 YSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTA 200
+S +D+ +CR+A+ IR I I Q+ RP+ DFE A R +V+
Sbjct: 286 FSGADMTQLCREASL----GPIRSLQTADIATITPDQV-RPIAYIDFENAFRTVRPSVSP 340
Query: 201 ADIRQFEEWNEKFG 214
D+ +E WN+ FG
Sbjct: 341 KDLELYENWNKTFG 354
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 1 MKRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGP 60
M LI +I+ P V W DIA AK ++E V+ P+ +P F +R P KG+L+ GP
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGP 125
Query: 61 PGTGKTMLAKAVA 73
PGTGKT++ K +A
Sbjct: 126 PGTGKTLIGKCIA 138
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%)
Query: 4 LIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGT 63
L+ R + E+P+V+W D+A AK+ L+EAVILP++ P F+ RKP G+L+ GPPGT
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT 71
Query: 64 GKTMLAKAVAIVYNQVHCGASN 85
GK+ LAKAVA N S+
Sbjct: 72 GKSYLAKAVATEANSTFFSVSS 93
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 27/160 (16%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD-LASDLDLELVSDQLEG 140
GA+N PW +D A RR E+RIY+PLP + R + + + + + D + EG
Sbjct: 168 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 227
Query: 141 YSASDIVVVCRDAAFMAMR---AAIRGKSVPQIQ---------------AIPMA------ 176
YS SDI VV +DA +R +A K V AI M+
Sbjct: 228 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEA 287
Query: 177 -QLKRP-VTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
+LK P +T DF AI R TV D+ + E++ FG
Sbjct: 288 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 327
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTML 68
I+ E+P+V+W D+A AK+ L+EAVILP++ P F+ RKP G+L+ GPPGTGK+ L
Sbjct: 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 100
Query: 69 AKAVAIVYNQVHCGASN 85
AKAVA N S+
Sbjct: 101 AKAVATEANSTFFSVSS 117
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-DLASDLDLELVSDQLE 139
GA+N PW +D A RR E+RIY+PLP + R + + + + + D + E
Sbjct: 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTE 250
Query: 140 GYSASDIVVVCRDAAFMAMR---AAIRGKSVPQIQ---------------AIPMA----- 176
GYS SDI VV +DA +R +A K V AI M+
Sbjct: 251 GYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIE 310
Query: 177 --QLKRP-VTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
+LK P +T DF AI R TV D+ + E++ FG
Sbjct: 311 ADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTML 68
I+ E+P+V+W D+A AK+ L+EAVILP++ P F+ RKP G+L+ GPPGTGK+ L
Sbjct: 26 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 85
Query: 69 AKAVAIVYNQVHCGASN 85
AKAVA N S+
Sbjct: 86 AKAVATEANSTFFSVSS 102
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 27/160 (16%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD-LASDLDLELVSDQLEG 140
GA+N PW +D A RR E+RIY+PLP + R + + + + + D + EG
Sbjct: 177 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 236
Query: 141 YSASDIVVVCRDAAFMAMR---AAIRGKSVPQIQ---------------AIPMA------ 176
YS SDI VV +DA +R +A K V AI M+
Sbjct: 237 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEA 296
Query: 177 -QLKRP-VTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
+LK P +T DF AI R TV D+ + E++ FG
Sbjct: 297 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 336
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTML 68
I+ E+P+V+W D+A AK+ L+EAVILP++ P F+ RKP G+L+ GPPGTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 69 AKAVAIVYNQVHCGASN 85
AKAVA N S+
Sbjct: 68 AKAVATEANSTFFSVSS 84
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 27/160 (16%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD-LASDLDLELVSDQLEG 140
GA+N PW +D A RR E+RIY+PLP + R + + + + + D + EG
Sbjct: 159 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 218
Query: 141 YSASDIVVVCRDAAFMAMR---AAIRGKSVPQIQ---------------AIPMA------ 176
YS SDI VV +DA +R +A K V AI M+
Sbjct: 219 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEA 278
Query: 177 -QLKRP-VTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
+LK P +T DF AI R TV D+ + E++ FG
Sbjct: 279 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 318
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 3 RLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPG 62
+LI +I+ V+W+DIA Q AK+ LQE VILP +P F +R P KG+L+ GPPG
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPG 64
Query: 63 TGKTMLAKAVAIVYNQVHCGAS 84
GKT+LA+AVA C A+
Sbjct: 65 NGKTLLARAVA-----TECSAT 81
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELL-RLILRQVDLASDLDLEL---V 134
V A+N P +D+A LRR KR+YV LP R+ LL RL+ +Q S LD E +
Sbjct: 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQ---GSPLDTEALRRL 217
Query: 135 SDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKC 194
+ +GYS SD+ + +DAA IR +V Q++ + ++ + R +T+ DF ++ +
Sbjct: 218 AKITDGYSGSDLTALAKDAAL----EPIRELNVEQVKCLDISAM-RAITEQDFHSSLKRI 272
Query: 195 RKTVTAADIRQFEEWNEKFG 214
R++V + +E+W++ +G
Sbjct: 273 RRSVAPQSLNSYEKWSQDYG 292
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 1 MKRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGP 60
+ LI +I+ V++ DIA Q AK+ LQE VILP +P F +R P +G+L+ GP
Sbjct: 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGP 156
Query: 61 PGTGKTMLAKAVAIVYN 77
PG GKTMLAKAVA N
Sbjct: 157 PGNGKTMLAKAVAAESN 173
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL-RQVDLASDLDLELVSDQLEG 140
GA+N P +D+A LRR KR+YV LP+ R LL+ +L +Q + +L ++ +G
Sbjct: 257 GATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG 316
Query: 141 YSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTA 200
YS SD+ + +DAA +R ++ + V + A M R + +DF ++ K +++V+
Sbjct: 317 YSGSDLTALAKDAALGPIR-ELKPEQVKNMSASEM----RNIRLSDFTESLKKIKRSVSP 371
Query: 201 ADIRQFEEWNEKFGSSV 217
+ + WN+ FG +
Sbjct: 372 QTLEAYIRWNKDFGDTT 388
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAK 70
ERP+V++ DI K + ++E V LPL+ P F+ + +P KG+L+ GPPGTGKT+LAK
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69
Query: 71 AVAIVYN 77
AVA N
Sbjct: 70 AVATETN 76
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 19/114 (16%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
GA+N P +D A LR R ++ I VP P GR E+L++ R+++LA D++LE ++ E
Sbjct: 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTE 220
Query: 140 GYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAK 193
G +++ +C +A A+R +L+ VT DF A+ K
Sbjct: 221 GCVGAELKAICTEAGMNAIR-----------------ELRDYVTMDDFRKAVEK 257
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYF-QHIRKPWKGVLMVGPPGTGK 65
R+ +VE P V W DI K+ LQE V P+E P F + P KGVL GPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 66 TMLAKAVA 73
T+LAKA+A
Sbjct: 525 TLLAKAIA 532
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
GA+N P ID A LR RL++ IY+PLP R +L+ LR+ +A D+DLE ++
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680
Query: 140 GYSASDIVVVCRDAAFMA--------MRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAI 191
G+S +D+ +C+ A +A +R ++ P + + + FE A+
Sbjct: 681 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAM 740
Query: 192 AKCRKTVTAADIRQFEEWNEKFGSS 216
R++V+ DIR++E + + S
Sbjct: 741 RFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V+++ G
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ +C +AA A+R
Sbjct: 406 HVGADLAALCSEAALQAIR 424
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
+V + DI K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYF-QHIRKPWKGVLMVGPPGTGK 65
R+ +VE P V W DI K+ LQE V P+E P F + P KGVL GPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 66 TMLAKAVA 73
T+LAKA+A
Sbjct: 525 TLLAKAIA 532
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
GA+N P ID A LR RL++ IY+PLP R +L+ LR+ +A D+DLE ++
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680
Query: 140 GYSASDIVVVCRDAAFMA--------MRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAI 191
G+S +D+ +C+ A +A +R ++ P + + + FE A+
Sbjct: 681 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAM 740
Query: 192 AKCRKTVTAADIRQFEEWNEKFGSS 216
R++V+ DIR++E + + S
Sbjct: 741 RFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V+++ G
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ +C +AA A+R
Sbjct: 406 HVGADLAALCSEAALQAIR 424
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
+V + D+ K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI-RKPWKGVLMVGPPGTGK 65
R+ +VE P V W DI K+ LQE V P+E P F P KGVL GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 66 TMLAKAVA 73
T+LAKA+A
Sbjct: 63 TLLAKAIA 70
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 18/140 (12%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
GA+N P ID A LR RL++ IY+PLP R +L+ LR+ +A D+DLE ++
Sbjct: 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 218
Query: 140 GYSASDIVVVCRDAAFMA--------MRAAIRGKSVPQIQAI----PMAQLKRPVTKADF 187
G+S +D+ +C+ A +A +R ++ P + P+ +++R F
Sbjct: 219 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR----DHF 274
Query: 188 EMAIAKCRKTVTAADIRQFE 207
E A+ R++V+ DIR++E
Sbjct: 275 EEAMRFARRSVSDNDIRKYE 294
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAK 70
E+PDV ++D+ K+ ++EAV LPL + ++ I P +GVL+ GPPGTGKTML K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 71 AVA 73
AVA
Sbjct: 225 AVA 227
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAK 70
E+ ++ + I + + L+E + LPL+ P FQ + KP KGVL+ GPPGTGKT+LAK
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233
Query: 71 AVA 73
AVA
Sbjct: 234 AVA 236
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR RL++++ +PLP+ +GR E+ ++ +V + D E +G
Sbjct: 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDG 385
Query: 141 YSASDIVVVCRDAAFMAMR 159
++ +DI +A F A+R
Sbjct: 386 FNGADIRNCATEAGFFAIR 404
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V+++ G
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ +C +AA A+R
Sbjct: 406 HVGADLAALCSEAALQAIR 424
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
+V + DI K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V+++ G
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ +C +AA A+R
Sbjct: 406 HVGADLAALCSEAALQAIR 424
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
+V + DI K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V+++ G
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ +C +AA A+R
Sbjct: 406 HVGADLAALCSEAALQAIR 424
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
+V + DI K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V+++ G
Sbjct: 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ +C +AA A+R
Sbjct: 406 HVGADLAALCSEAALQAIR 424
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
+V + D+ K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTML 68
+ E+PDV +SD+ + L+E V LPL P F + P KG+L+ GPPGTGKT+
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 69 AKAVA 73
A+AVA
Sbjct: 260 ARAVA 264
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R+++++ LP GR + R+ + + + + EL+S
Sbjct: 354 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPN 413
Query: 141 YSASDIVVVCRDAAFMAMRA 160
+ +++ VC +A A+RA
Sbjct: 414 STGAELRSVCTEAGMFAIRA 433
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQH--IRKPWKGVLMVGPPGTGKTMLA 69
E+P +SD+ K + L EA++LP+++ F+ IR P KG LM GPPGTGKT+LA
Sbjct: 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLA 232
Query: 70 KAVAIVYN 77
+A A N
Sbjct: 233 RACAAQTN 240
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 81 CGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQL 138
A+N +D A LR RL+++I PLPS R ++L++ R++ D++ + ++
Sbjct: 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARST 383
Query: 139 EGYSASDIVVVCRDAAFMAMR 159
+ ++ + + V +A +A+R
Sbjct: 384 DEFNGAQLKAVTVEAGMIALR 404
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 10/84 (11%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTM 67
I E+P+V++ D+A +AK+ + E V L+ P + ++ K KGVL+VGPPGTGKT+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 68 LAKAVAIVYNQVHC-----GASNF 86
LAKAVA + H G S+F
Sbjct: 60 LAKAVA---GEAHVPFFSMGGSSF 80
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A +R R ++++ V P +GR E+L++ ++ V LA+D++L+ V+ G
Sbjct: 157 ATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAG 216
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ + +AA +A R
Sbjct: 217 LAGADLANIINEAALLAGR 235
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 19/113 (16%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N +D A LR R++++I P PS + R E+LR+ R+++L ++L V++++ G
Sbjct: 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNG 352
Query: 141 YSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAK 193
S +D+ VC +A A+R + + VT+ DFE+A+ K
Sbjct: 353 CSGADVKGVCTEAGMYALR-----------------ERRIHVTQEDFELAVGK 388
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 9 IIVER-PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQH--IRKPWKGVLMVGPPGTGK 65
++VE+ PD + + K K ++E + LP++ P F+ I +P KGV++ GPPGTGK
Sbjct: 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGK 195
Query: 66 TMLAKAVA 73
T+LA+AVA
Sbjct: 196 TLLARAVA 203
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R ++++ V LP GR+++L++ +R+V LA D+D +++ G
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215
Query: 141 YSASDIVVVCRDAAFMAMRAAIR 163
+S +D+ + +AA A R R
Sbjct: 216 FSGADLANLVNEAALFAARGNKR 238
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVA 73
++D+A +AK+ + E V L +PS FQ + K KGVLMVGPPGTGKT+LAKA+A
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAV 72
P +SDI + ++E+V LPL P ++ + KP KGV++ G PGTGKT+LAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 73 A 73
A
Sbjct: 237 A 237
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N +D A +R R++++I P S ++++L + +++L+ D++LE + +
Sbjct: 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDD 386
Query: 141 YSASDIVVVCRDAAFMAMR 159
S +DI +C +A +A+R
Sbjct: 387 LSGADIQAMCTEAGLLALR 405
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKTMLAKAVA 73
V + D+ +A + L+E V L+ PS F I R P KG+L+VGPPGTGKT+LA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVA 70
Query: 74 IVYNQ--VHCGASNF 86
N H S+F
Sbjct: 71 GEANVPFFHISGSDF 85
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R +K+I V P GR+++L + R LA D++LE+++ + G
Sbjct: 160 ATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPG 219
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ + +AA +A R
Sbjct: 220 FVGADLENLVNEAALLAAR 238
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKA 71
P+V W+DI ++ L A++ P+ P F+ + P GVL+ GPPG GKT+LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKA 63
Query: 72 VA 73
VA
Sbjct: 64 VA 65
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKTMLAKAVA 73
V + D+ +A + L+E V L+ PS F I R P KG+L+VGPPGTG T+LA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATLLARAVA 70
Query: 74 IVYNQ--VHCGASNF 86
N H S+F
Sbjct: 71 GEANVPFFHISGSDF 85
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R +K+I V P GR+++L + R LA D++LE+++ + G
Sbjct: 160 ATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPG 219
Query: 141 YSASDIVVVCRDAAFMAMR 159
+ +D+ + +AA +A R
Sbjct: 220 FVGADLENLVNEAALLAAR 238
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKT 66
++ E P V + D+A +AK+ L+E V L+ PS F + R P KGVL+VGPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 78
Query: 67 MLAKAVA 73
LA+AVA
Sbjct: 79 HLARAVA 85
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R +++I + P GR+++LR+ R LA D+DL L++ + G
Sbjct: 175 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 234
Query: 141 YSASD 145
+ +D
Sbjct: 235 FVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKT 66
++ E P V + D+A +AK+ L+E V L+ PS F + R P KGVL+VGPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 67 MLAKAVA 73
LA+AVA
Sbjct: 88 HLARAVA 94
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R +++I + P GR+++LR+ R LA D+DL L++ + G
Sbjct: 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 243
Query: 141 YSASD 145
+ +D
Sbjct: 244 FVGAD 248
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKT 66
++ E P V + D+A +AK+ L+E V L+ PS F + R P KGVL+VGPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 67 MLAKAVA 73
LA+AVA
Sbjct: 88 HLARAVA 94
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R +++I + P GR+++LR+ R LA D+DL L++ + G
Sbjct: 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 243
Query: 141 YSASD 145
+ +D
Sbjct: 244 FVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKT 66
++ E P V + D+A +AK+ L+E V L+ PS F + R P KGVL+VGPPG GKT
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 63
Query: 67 MLAKAVA 73
LA+AVA
Sbjct: 64 HLARAVA 70
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 83 ASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140
A+N P +D A LR R +++I + P GR+++LR+ R LA D+DL L++ + G
Sbjct: 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 219
Query: 141 YSASD 145
+ +D
Sbjct: 220 FVGAD 224
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVA 73
V + D+A +AK ++E V + Q K KG L++GPPG GKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDL--ASDLDLELVSDQLEGYSASD 145
+D A +R RL++ +++ LP+ R+E+ L+ + L +S + +++ G+S +D
Sbjct: 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217
Query: 146 IVVVCRDAAFMAMR 159
I +C +AA A R
Sbjct: 218 IANICNEAALHAAR 231
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 107 PSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166
P+ R ++L++ R+++L ++L +++ + G S +++ VC +A A+R
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR------- 63
Query: 167 VPQIQAIPMAQLKRPVTKADFEMAIAK 193
+ + VT+ DFEMA+AK
Sbjct: 64 ----------ERRVHVTQEDFEMAVAK 80
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 105 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRG 164
P P+ R ++L++ R+ +L ++L +++ G S +++ VC +A A+R
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALR----- 55
Query: 165 KSVPQIQAIPMAQLKRPVTKADFEMAIAK 193
+ + VT+ DFE A+AK
Sbjct: 56 ------------ERRVHVTQEDFEXAVAK 72
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVA 73
+ + VL+ GPPGTGKT LA A+A
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIA 98
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 52 WKGVLMVGPPGTGKTMLAKAVA 73
+ VL+ GPPGTGKT LA A+A
Sbjct: 63 GRAVLLAGPPGTGKTALALAIA 84
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 9 IIVERPDVQWSDIANQV-----KAKKLLQEAVILP----LEKPSYFQHIRKPWKGVLMVG 59
I++ + +S +++ +A ++++ +++P ++ F + +G+++ G
Sbjct: 1215 IVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCG 1274
Query: 60 PPGTGKTML 68
PPG+GKTM+
Sbjct: 1275 PPGSGKTMI 1283
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 39 LEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRL 98
L+K F +++K + +++VG G GKT K V I + G +N + ID L +
Sbjct: 910 LKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV-IDAMAIFDGHANVVYVIDTKVLTK- 967
Query: 99 EKRIYVPLPSSS--GRQELLRLILRQVD 124
+ +Y + ++ R L ILR+V+
Sbjct: 968 -ESLYGSMLKATLEWRDGLFTSILRRVN 994
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVA 73
++P + +L+ GPPG GKT LA +A
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 25 VKAKKLLQEAVILP----LEKPSYFQHIRKPWKGVLMVGPPGTGKTML 68
++A ++++ +++P ++ F + +G+++ GPPG+GKTM+
Sbjct: 1017 LEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064
Score = 26.9 bits (58), Expect = 8.5, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 39 LEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRL 98
L+K F +++K + +++VG G GKT K V I + G +N + ID L +
Sbjct: 691 LKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV-IDAMAIFDGHANVVYVIDTKVLTK- 748
Query: 99 EKRIYVPLPSSS--GRQELLRLILRQVD 124
+ +Y + ++ R L ILR+V+
Sbjct: 749 -ESLYGSMLKATLEWRDGLFTSILRRVN 775
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVA 73
++P + +L+ GPPG GKT LA +A
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVA 73
++P + +L+ GPPG GKT LA +A
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 46 QHIRKPWKG--VLMVGPPGTGKTMLAKAVA 73
Q + K KG + + GPPG GKT LAK++A
Sbjct: 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIA 129
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL++G PGTGK+ML +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 37 LPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77
+ L++P +H P K +LM+GP G GKT +A+ +A + N
Sbjct: 38 MQLQEP--LRHEVTP-KNILMIGPTGVGKTEIARRLAKLAN 75
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPW 88
R P VL+ GPP +GKT LA +A SNFP+
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIA--------EESNFPF 91
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77
K +LM+GP G GKT +A+ +A + N
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLAN 74
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77
K +LM+GP G GKT +A+ +A + N
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLAN 81
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77
K +LM+GP G GKT +A+ +A + N
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLAN 75
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 8 DIIVERPDVQWSDIAN-----QVKAKKLLQEAVILPLEKPSYFQHIRKPW----KGVLMV 58
D V D WS N +V+ K+ V++P + + W + +++
Sbjct: 1251 DYSVSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILC 1310
Query: 59 GPPGTGKTMLAKAVAIVYNQVHCGASNF 86
GPPG+GKTM + + + NF
Sbjct: 1311 GPPGSGKTMTLTSTLRAFPDFEVVSLNF 1338
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPW 88
R P VL+ GPP +GKT LA +A SNFP+
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIA--------EESNFPF 92
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 8 DIIVERPDVQWSDIAN-----QVKAKKLLQEAVILPLEKPSYFQHIRKPW----KGVLMV 58
D V D WS N +V+ K+ V++P + + W + +++
Sbjct: 1251 DYSVSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILC 1310
Query: 59 GPPGTGKTMLAKAVAIVYNQVHCGASNF 86
GPPG+GKTM + + + NF
Sbjct: 1311 GPPGSGKTMTLTSTLRAFPDFEVVSLNF 1338
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 310
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 37 LPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77
+ L++P +H P K +LM+GP G GKT +A+ +A + N
Sbjct: 38 MQLQEP--LRHEVTP-KNILMIGPTGVGKTEIARRLAKLAN 75
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 55 VLMVGPPGTGKTMLAKAVAIV---YNQVHCGASNFPWN 89
+ + GP TGKT +A+A+A Y V+ NFP+N
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFN 144
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 55 VLMVGPPGTGKTMLAKAVAIV---YNQVHCGASNFPWN 89
+ + GP TGKT +A+A+A Y V+ NFP+N
Sbjct: 108 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFN 145
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 41 KPSYFQHIRKPWKGV----LMVGPPGTGKTMLAKAVA 73
K + F+H K GV ++ GPPG GKT A VA
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 21/65 (32%)
Query: 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKG------------VLMVGPPGTGKTML 68
+ Q +AKK+L AV + H ++ G +L++GP G+GKT+L
Sbjct: 17 VIGQEQAKKVLAVAV---------YNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67
Query: 69 AKAVA 73
A+ +A
Sbjct: 68 AETLA 72
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 44 YFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNF 86
YFQ + +++GPPG+GK + + +A + H + +F
Sbjct: 19 YFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 21/65 (32%)
Query: 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKG------------VLMVGPPGTGKTML 68
+ Q +AKK+L AV + H ++ G +L++GP G+GKT+L
Sbjct: 17 VIGQEQAKKVLAVAV---------YNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67
Query: 69 AKAVA 73
A+ +A
Sbjct: 68 AETLA 72
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL+ GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL+ GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL+ GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL+ GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 56 LMVGPPGTGKTMLAKAVA--IVYNQVHC 81
L+V PP GKTML + +A I YN C
Sbjct: 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDC 202
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL+ GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYN 77
+++ GPPGTGKT LA+ +A N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYAN 75
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 56 LMVGPPGTGKTMLAKAVAIVYNQVH------CGASNFPWNIDDAFLRRLEKRI 102
L+ GPPGTGKT+ + + +++H C SN + A LR L ++
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 56 LMVGPPGTGKTMLAKAVA--IVYNQVHC 81
L+V PP GKTML + +A I YN C
Sbjct: 197 LIVAPPKAGKTMLLQNIAQSIAYNHPDC 224
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 54 GVLMVGPPGTGKTMLAKAVA 73
+L++GP G+GKT++A+ +A
Sbjct: 74 NILLIGPTGSGKTLMAQTLA 93
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPS 108
++P + +GP G GKT LA+A+A S F D+ + R++ Y+ S
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARALA---------ESIFG---DEESMIRIDMSEYMEKHS 565
Query: 109 SSGRQ 113
+SG Q
Sbjct: 566 TSGGQ 570
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVA 73
RK +L GPPGTGKT A A+A
Sbjct: 35 RKNIPHLLFSGPPGTGKTATAIALA 59
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 106 LPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRA 160
LP GR + R+ + + + + EL+S + +++ VC +A A+RA
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 61
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVA 73
RK +L GPPGTGKT A A+A
Sbjct: 35 RKNIPHLLFSGPPGTGKTATAIALA 59
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 54 GVLMVGPPGTGKTMLAKAVA 73
+L+ G PGTGKT +A+ +A
Sbjct: 12 NILITGTPGTGKTSMAEMIA 31
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
VL+ GPPG G+T LA +A
Sbjct: 54 VLLAGPPGLGRTTLAHIIA 72
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 45 FQHIRKP--WKGVLMVGPPGTGKTMLAKAV 72
F H P KG+ VG PG GKT LA A
Sbjct: 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVAT 58
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 45 FQHIRKP--WKGVLMVGPPGTGKTMLAKAV 72
F H P KG+ VG PG GKT LA A
Sbjct: 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVAT 58
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 50 KPWKGVLMVGPPGTGKTMLAKAVA 73
+P L +GP G GKT LAK +A
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLA 609
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 50 KPWKGVLMVGPPGTGKTMLAKAVA 73
+P L +GP G GKT LAK +A
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 50 KPWKGVLMVGPPGTGKTMLAKAVA 73
+P L +GP G GKT LAK +A
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLA 65
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77
K +L +GP G GKT +A+ +A + N
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLAN 75
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 139 EGYSASDIVVVCRDAAFMAMR 159
EGYS SDI VV +DA +R
Sbjct: 36 EGYSGSDIAVVVKDALMQPIR 56
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 53 KGVLMVGPPGTGKTMLAKAVA 73
+ VL+ G PGTGKT +A +A
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMA 91
>pdb|2HOE|A Chain A, Crystal Structure Of N-Acetylglucosamine Kinase (Tm1224)
From Thermotoga Maritima At 2.46 A Resolution
Length = 380
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 105 PLPSSSGRQELLRLILRQVDLASD 128
PLPS S R+E L + R +D A D
Sbjct: 117 PLPSQSDREETLNVXYRIIDRAKD 140
>pdb|1UF2|A Chain A, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|B Chain B, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 1019
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 121 RQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKR 180
R D AS+ LV++ Y+ ++ + + + + + I +SV IP++++
Sbjct: 6 RAYDGASEFKSVLVTEGTSHYTPVEVYNILDELKTIKITSTIAEQSVVSRTPIPLSKIGL 65
Query: 181 PVTKADFEMAIAKCRKTVTAAD 202
K F++ + KC ++ D
Sbjct: 66 QDVKKLFDINVIKCGSSLRIVD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,021,779
Number of Sequences: 62578
Number of extensions: 224010
Number of successful extensions: 993
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 151
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)