Query psy15622
Match_columns 217
No_of_seqs 177 out of 1886
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 17:25:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738|consensus 100.0 2.2E-46 4.8E-51 313.3 18.9 216 1-216 194-491 (491)
2 KOG0730|consensus 100.0 1E-40 2.2E-45 294.6 18.5 191 7-212 422-692 (693)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2.1E-40 4.5E-45 275.5 15.9 170 10-196 142-394 (406)
4 KOG0733|consensus 100.0 1.1E-38 2.4E-43 279.2 18.8 210 5-215 497-790 (802)
5 KOG0736|consensus 100.0 2E-37 4.4E-42 276.9 17.7 206 9-214 662-952 (953)
6 KOG0733|consensus 100.0 8.1E-37 1.7E-41 267.6 17.0 203 12-215 183-525 (802)
7 KOG0739|consensus 100.0 2.4E-36 5.1E-41 246.1 11.5 212 4-215 118-437 (439)
8 KOG0737|consensus 100.0 1.1E-34 2.3E-39 242.3 16.3 207 8-214 81-381 (386)
9 TIGR01243 CDC48 AAA family ATP 100.0 4E-34 8.6E-39 266.4 20.6 207 9-215 443-731 (733)
10 PTZ00454 26S protease regulato 100.0 4E-32 8.6E-37 235.9 16.5 174 7-197 133-389 (398)
11 KOG0740|consensus 100.0 6E-32 1.3E-36 232.4 12.4 210 3-216 137-426 (428)
12 CHL00195 ycf46 Ycf46; Provisio 100.0 7.8E-31 1.7E-35 232.4 18.8 190 3-213 210-484 (489)
13 KOG0652|consensus 100.0 2.4E-31 5.3E-36 213.7 12.7 169 10-195 162-413 (424)
14 PRK03992 proteasome-activating 100.0 1E-30 2.2E-35 227.4 15.5 178 7-201 119-379 (389)
15 KOG0726|consensus 100.0 3.8E-31 8.3E-36 215.2 9.5 169 10-195 176-427 (440)
16 KOG0734|consensus 100.0 7.9E-31 1.7E-35 227.2 11.2 164 14-195 299-542 (752)
17 KOG0727|consensus 100.0 5.2E-30 1.1E-34 205.3 13.3 169 10-195 146-397 (408)
18 COG0464 SpoVK ATPases of the A 100.0 1.1E-29 2.4E-34 227.5 16.6 180 8-209 231-492 (494)
19 PTZ00361 26 proteosome regulat 100.0 1.1E-29 2.3E-34 222.3 16.0 169 10-195 174-425 (438)
20 KOG0731|consensus 100.0 6.2E-30 1.3E-34 231.9 14.7 166 12-195 304-554 (774)
21 KOG0728|consensus 100.0 3.2E-29 6.9E-34 200.5 12.9 176 9-201 137-395 (404)
22 COG1223 Predicted ATPase (AAA+ 100.0 5.6E-29 1.2E-33 199.8 13.5 166 12-197 114-358 (368)
23 TIGR01242 26Sp45 26S proteasom 100.0 1.8E-28 3.8E-33 212.0 16.0 169 9-194 112-363 (364)
24 KOG0729|consensus 100.0 4.2E-29 9.2E-34 201.4 9.5 169 10-195 168-419 (435)
25 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-27 3.2E-32 213.7 16.2 167 11-195 47-296 (495)
26 KOG0735|consensus 100.0 2.3E-27 5.1E-32 211.2 16.4 192 14-213 662-935 (952)
27 KOG0730|consensus 99.9 4.1E-27 8.9E-32 208.6 13.6 180 14-216 180-449 (693)
28 COG0465 HflB ATP-dependent Zn 99.9 7.8E-27 1.7E-31 208.3 11.8 165 13-195 144-391 (596)
29 TIGR01243 CDC48 AAA family ATP 99.9 8.2E-26 1.8E-30 210.8 18.7 201 12-212 171-464 (733)
30 CHL00176 ftsH cell division pr 99.9 2E-25 4.4E-30 203.5 16.8 165 12-194 176-423 (638)
31 TIGR03689 pup_AAA proteasome A 99.9 3.1E-25 6.7E-30 196.9 16.9 178 5-195 168-479 (512)
32 KOG0741|consensus 99.9 1.2E-25 2.7E-30 195.0 11.6 196 10-207 210-505 (744)
33 PRK10733 hflB ATP-dependent me 99.9 7.9E-24 1.7E-28 194.4 15.2 166 13-196 146-394 (644)
34 KOG0732|consensus 99.9 4E-24 8.7E-29 198.9 12.2 187 13-200 259-531 (1080)
35 KOG0651|consensus 99.9 4E-24 8.7E-29 175.4 5.6 167 12-195 125-374 (388)
36 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.9E-21 4.2E-26 188.4 13.2 100 79-195 1774-1878(2281)
37 KOG0736|consensus 99.8 8.7E-20 1.9E-24 164.4 13.0 164 53-216 432-687 (953)
38 KOG0743|consensus 99.7 2E-17 4.2E-22 142.4 11.2 132 16-149 198-412 (457)
39 KOG0742|consensus 99.7 2.1E-16 4.5E-21 134.5 13.3 138 13-154 349-589 (630)
40 PLN00020 ribulose bisphosphate 99.7 1.5E-16 3.3E-21 135.0 11.3 143 14-161 110-355 (413)
41 PRK00080 ruvB Holliday junctio 99.7 3.3E-15 7.1E-20 127.6 18.8 178 11-213 17-272 (328)
42 TIGR00635 ruvB Holliday juncti 99.7 5.7E-15 1.2E-19 124.7 18.0 153 17-194 2-229 (305)
43 KOG0735|consensus 99.7 9.7E-16 2.1E-20 137.6 12.8 120 79-211 543-677 (952)
44 TIGR02881 spore_V_K stage V sp 99.6 2.6E-15 5.5E-20 124.4 11.5 148 17-164 4-245 (261)
45 COG2255 RuvB Holliday junction 99.6 4E-14 8.7E-19 115.7 17.9 178 12-214 19-274 (332)
46 PF05496 RuvB_N: Holliday junc 99.6 1.4E-15 3E-20 121.4 8.9 132 12-151 17-223 (233)
47 CHL00181 cbbX CbbX; Provisiona 99.6 2.3E-14 5.1E-19 120.0 14.7 145 19-164 23-261 (287)
48 KOG0744|consensus 99.6 3.4E-15 7.4E-20 123.8 7.8 159 17-194 140-414 (423)
49 PRK14962 DNA polymerase III su 99.5 9.9E-14 2.1E-18 123.4 12.9 121 8-140 3-210 (472)
50 TIGR02880 cbbX_cfxQ probable R 99.5 2.4E-13 5.3E-18 113.8 14.3 144 20-164 23-260 (284)
51 PRK14961 DNA polymerase III su 99.5 1.5E-13 3.2E-18 119.0 13.3 133 8-153 5-224 (363)
52 PRK14956 DNA polymerase III su 99.5 1.6E-13 3.5E-18 121.0 13.3 133 8-153 7-226 (484)
53 COG2256 MGS1 ATPase related to 99.5 2.1E-13 4.6E-18 116.2 13.2 171 12-216 17-259 (436)
54 PRK14964 DNA polymerase III su 99.5 2E-13 4.2E-18 121.4 13.1 134 9-155 3-223 (491)
55 PRK07003 DNA polymerase III su 99.5 2.1E-13 4.6E-18 125.0 12.3 134 8-154 5-225 (830)
56 PRK14958 DNA polymerase III su 99.5 2.2E-13 4.9E-18 122.2 12.3 134 8-154 5-225 (509)
57 PRK14960 DNA polymerase III su 99.5 3.6E-13 7.8E-18 122.2 13.1 133 8-153 4-223 (702)
58 PRK06645 DNA polymerase III su 99.5 4.5E-13 9.8E-18 119.8 13.0 134 9-155 11-235 (507)
59 PRK12323 DNA polymerase III su 99.5 4.5E-13 9.7E-18 121.4 12.3 134 8-154 5-230 (700)
60 TIGR02902 spore_lonB ATP-depen 99.5 6.7E-13 1.4E-17 120.0 12.4 157 7-195 53-333 (531)
61 PRK04195 replication factor C 99.5 1.5E-12 3.4E-17 116.6 14.5 135 9-155 4-205 (482)
62 PRK05563 DNA polymerase III su 99.5 1.3E-12 2.8E-17 118.7 14.0 134 7-153 4-224 (559)
63 PRK08691 DNA polymerase III su 99.4 1.1E-12 2.5E-17 119.8 13.1 134 8-154 5-225 (709)
64 KOG0989|consensus 99.4 5.9E-12 1.3E-16 104.0 15.8 127 7-150 24-228 (346)
65 PRK07994 DNA polymerase III su 99.4 1.8E-12 3.9E-17 118.5 14.2 133 9-154 6-225 (647)
66 PF05673 DUF815: Protein of un 99.4 1.8E-12 3.9E-17 104.8 12.4 133 10-150 18-242 (249)
67 PRK14949 DNA polymerase III su 99.4 1.6E-12 3.6E-17 121.2 13.0 134 8-154 5-225 (944)
68 PRK14951 DNA polymerase III su 99.4 2.2E-12 4.7E-17 117.6 12.9 132 9-153 6-229 (618)
69 PRK14969 DNA polymerase III su 99.4 3E-12 6.5E-17 115.5 13.3 133 9-154 6-225 (527)
70 PRK05896 DNA polymerase III su 99.4 3.2E-12 6.9E-17 115.6 13.4 132 8-152 5-223 (605)
71 PRK14957 DNA polymerase III su 99.4 3.5E-12 7.6E-17 114.9 13.2 133 9-154 6-225 (546)
72 PRK07133 DNA polymerase III su 99.4 3.7E-12 8E-17 117.3 13.2 133 8-153 7-223 (725)
73 TIGR00763 lon ATP-dependent pr 99.4 3.4E-12 7.4E-17 120.2 13.1 161 20-192 321-584 (775)
74 PRK14965 DNA polymerase III su 99.4 3.2E-12 6.9E-17 116.6 12.4 132 9-153 6-224 (576)
75 TIGR02397 dnaX_nterm DNA polym 99.4 4.4E-12 9.6E-17 109.1 12.7 131 9-152 4-221 (355)
76 PRK14963 DNA polymerase III su 99.4 4.3E-12 9.3E-17 113.8 12.7 130 9-151 4-219 (504)
77 PLN03025 replication factor C 99.4 5.8E-12 1.2E-16 107.3 12.6 126 9-151 3-199 (319)
78 COG2812 DnaX DNA polymerase II 99.4 2.7E-12 5.8E-17 114.1 10.9 137 7-156 4-227 (515)
79 PRK08451 DNA polymerase III su 99.4 7.8E-12 1.7E-16 112.2 13.3 135 8-155 3-224 (535)
80 PRK08084 DNA replication initi 99.4 3.1E-11 6.7E-16 98.5 15.5 150 12-192 15-234 (235)
81 TIGR02639 ClpA ATP-dependent C 99.4 9.1E-12 2E-16 116.7 13.5 176 14-215 177-454 (731)
82 PRK06647 DNA polymerase III su 99.3 1.2E-11 2.6E-16 112.2 13.0 133 8-153 5-224 (563)
83 PRK14953 DNA polymerase III su 99.3 1.4E-11 3.1E-16 110.1 13.1 132 9-153 6-224 (486)
84 PRK06893 DNA replication initi 99.3 4.3E-11 9.4E-16 97.3 14.7 130 12-152 9-206 (229)
85 TIGR00362 DnaA chromosomal rep 99.3 7.2E-11 1.6E-15 103.6 17.1 67 90-157 249-318 (405)
86 PRK09111 DNA polymerase III su 99.3 1.9E-11 4.1E-16 111.5 13.5 133 8-153 13-237 (598)
87 PRK00149 dnaA chromosomal repl 99.3 8.3E-11 1.8E-15 104.6 17.3 171 14-215 117-372 (450)
88 PRK13342 recombination factor 99.3 1.7E-11 3.7E-16 107.9 12.2 116 11-139 4-187 (413)
89 PRK14952 DNA polymerase III su 99.3 1.3E-11 2.9E-16 112.1 11.5 132 9-153 3-223 (584)
90 PRK12422 chromosomal replicati 99.3 1.6E-10 3.5E-15 102.3 18.0 180 13-216 105-368 (445)
91 PRK07764 DNA polymerase III su 99.3 1.4E-11 3E-16 115.9 11.5 131 9-152 5-224 (824)
92 PHA02544 44 clamp loader, smal 99.3 4.4E-11 9.5E-16 101.5 13.0 102 9-122 11-175 (316)
93 PRK14959 DNA polymerase III su 99.3 3.3E-11 7.1E-16 109.6 12.9 121 8-140 5-212 (624)
94 PRK14970 DNA polymerase III su 99.3 6.5E-11 1.4E-15 102.6 14.2 128 10-150 8-210 (367)
95 PRK08903 DnaA regulatory inact 99.3 2.4E-10 5.1E-15 92.6 16.3 152 11-192 10-224 (227)
96 PRK00440 rfc replication facto 99.3 6.4E-11 1.4E-15 100.3 13.5 119 9-140 7-195 (319)
97 COG0464 SpoVK ATPases of the A 99.3 4.8E-11 1E-15 107.3 13.3 165 38-213 3-254 (494)
98 PRK12402 replication factor C 99.3 3.3E-11 7.1E-16 102.9 11.5 128 9-153 5-227 (337)
99 PRK14955 DNA polymerase III su 99.3 6.6E-11 1.4E-15 103.6 13.5 58 8-76 5-62 (397)
100 PRK06305 DNA polymerase III su 99.3 7.9E-11 1.7E-15 104.6 14.0 130 9-151 7-224 (451)
101 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.2E-10 4.8E-15 92.5 15.4 132 13-157 9-209 (226)
102 PRK06620 hypothetical protein; 99.3 2E-10 4.4E-15 92.4 14.9 131 11-152 8-192 (214)
103 PRK08727 hypothetical protein; 99.3 3.2E-10 6.9E-15 92.5 16.1 152 12-194 12-231 (233)
104 PRK14950 DNA polymerase III su 99.3 7.7E-11 1.7E-15 107.9 13.6 131 8-151 5-223 (585)
105 PRK07940 DNA polymerase III su 99.3 4.4E-11 9.5E-16 104.3 11.4 124 17-147 3-212 (394)
106 PRK09087 hypothetical protein; 99.2 2.3E-10 5.1E-15 92.8 13.6 151 12-194 14-222 (226)
107 COG0466 Lon ATP-dependent Lon 99.2 1.7E-10 3.8E-15 104.5 12.4 95 19-120 323-508 (782)
108 PRK13341 recombination factor 99.2 1.7E-10 3.7E-15 107.4 12.5 100 9-121 18-182 (725)
109 PRK14086 dnaA chromosomal repl 99.2 1.1E-09 2.4E-14 99.4 17.3 64 89-153 426-492 (617)
110 KOG2028|consensus 99.2 1.5E-10 3.2E-15 98.0 10.5 154 12-195 131-369 (554)
111 PRK14971 DNA polymerase III su 99.2 6.5E-10 1.4E-14 102.0 15.6 130 10-152 8-225 (614)
112 PRK10787 DNA-binding ATP-depen 99.2 2.8E-10 6.1E-15 107.0 12.9 157 20-194 323-582 (784)
113 PRK14954 DNA polymerase III su 99.2 9.4E-10 2E-14 100.8 15.5 128 9-149 6-228 (620)
114 PRK11034 clpA ATP-dependent Cl 99.2 3E-10 6.5E-15 106.2 12.5 120 80-213 318-456 (758)
115 KOG2004|consensus 99.2 8.7E-11 1.9E-15 106.3 8.4 135 19-161 411-653 (906)
116 PRK14948 DNA polymerase III su 99.1 2.5E-09 5.3E-14 98.3 16.4 128 10-150 7-223 (620)
117 COG2607 Predicted ATPase (AAA+ 99.1 9.6E-10 2.1E-14 88.3 12.0 110 10-127 51-246 (287)
118 TIGR02928 orc1/cdc6 family rep 99.1 1.7E-09 3.7E-14 93.4 14.2 156 14-195 10-275 (365)
119 PRK05642 DNA replication initi 99.1 3.2E-09 7E-14 86.6 14.7 122 52-192 45-233 (234)
120 PRK14088 dnaA chromosomal repl 99.1 2.8E-09 6.1E-14 94.5 15.3 63 90-153 244-309 (440)
121 TIGR02903 spore_lon_C ATP-depe 99.1 2.3E-09 4.9E-14 98.7 14.9 100 83-195 330-431 (615)
122 PF00004 AAA: ATPase family as 99.1 7.9E-11 1.7E-15 86.7 3.7 28 79-106 104-132 (132)
123 PRK00411 cdc6 cell division co 99.1 2.9E-09 6.3E-14 93.0 13.6 156 14-195 25-283 (394)
124 TIGR03345 VI_ClpV1 type VI sec 99.1 2.4E-09 5.2E-14 101.7 13.3 118 13-143 181-391 (852)
125 PRK14087 dnaA chromosomal repl 99.0 5.4E-09 1.2E-13 92.9 13.8 108 89-215 255-371 (450)
126 PRK13407 bchI magnesium chelat 99.0 5.7E-09 1.2E-13 89.1 13.4 50 14-76 3-53 (334)
127 PF00308 Bac_DnaA: Bacterial d 99.0 1.3E-08 2.7E-13 82.3 13.6 131 13-154 2-213 (219)
128 COG0593 DnaA ATPase involved i 99.0 3.3E-08 7.2E-13 85.9 16.7 104 82-204 214-326 (408)
129 CHL00081 chlI Mg-protoporyphyr 99.0 1.1E-08 2.3E-13 87.8 13.4 52 13-76 11-62 (350)
130 PRK10865 protein disaggregatio 98.9 4.3E-09 9.3E-14 100.2 9.6 101 12-125 171-359 (857)
131 COG1224 TIP49 DNA helicase TIP 98.9 5.2E-08 1.1E-12 82.5 14.7 107 86-212 341-448 (450)
132 TIGR02030 BchI-ChlI magnesium 98.9 3.2E-08 6.9E-13 84.7 13.5 48 17-76 2-49 (337)
133 TIGR00764 lon_rel lon-related 98.9 1.3E-08 2.8E-13 93.5 11.6 56 8-77 7-62 (608)
134 PRK11034 clpA ATP-dependent Cl 98.9 1.9E-08 4.2E-13 94.2 12.0 141 20-163 459-721 (758)
135 TIGR03015 pepcterm_ATPase puta 98.9 1.8E-08 3.9E-13 83.4 10.6 84 94-195 179-267 (269)
136 PRK09112 DNA polymerase III su 98.9 3.5E-08 7.6E-13 85.0 12.6 124 13-150 17-241 (351)
137 TIGR02639 ClpA ATP-dependent C 98.9 2E-08 4.3E-13 94.4 11.7 74 90-163 632-717 (731)
138 TIGR03346 chaperone_ClpB ATP-d 98.9 1.3E-08 2.8E-13 97.0 10.0 118 12-142 166-376 (852)
139 PRK05564 DNA polymerase III su 98.9 1E-07 2.2E-12 81.0 14.4 110 16-140 1-182 (313)
140 KOG0991|consensus 98.8 3.6E-08 7.9E-13 79.1 10.4 55 9-75 17-71 (333)
141 PRK07471 DNA polymerase III su 98.8 2.4E-07 5.3E-12 80.2 15.4 53 13-76 13-65 (365)
142 PTZ00112 origin recognition co 98.8 1.6E-07 3.4E-12 88.0 13.6 152 19-195 755-1007(1164)
143 KOG1969|consensus 98.8 5.3E-08 1.2E-12 88.7 10.1 147 9-160 261-518 (877)
144 TIGR02640 gas_vesic_GvpN gas v 98.7 6.7E-08 1.5E-12 80.1 9.8 39 81-120 155-198 (262)
145 CHL00095 clpC Clp protease ATP 98.7 2.8E-08 6E-13 94.5 8.3 117 14-143 174-382 (821)
146 COG1117 PstB ABC-type phosphat 98.7 4.8E-08 1E-12 77.5 7.8 102 53-155 34-164 (253)
147 PF01078 Mg_chelatase: Magnesi 98.7 1.8E-08 3.9E-13 80.0 5.5 48 17-78 1-48 (206)
148 PF09336 Vps4_C: Vps4 C termin 98.7 1.7E-08 3.7E-13 64.9 3.7 35 180-214 28-62 (62)
149 TIGR02442 Cob-chelat-sub cobal 98.7 4.7E-07 1E-11 83.9 14.4 48 17-76 2-49 (633)
150 smart00350 MCM minichromosome 98.7 4E-07 8.8E-12 82.3 13.6 33 89-121 368-401 (509)
151 COG0606 Predicted ATPase with 98.7 8.4E-08 1.8E-12 84.1 8.8 50 15-78 175-224 (490)
152 COG1124 DppF ABC-type dipeptid 98.7 3E-08 6.5E-13 79.9 5.6 102 50-155 31-156 (252)
153 PRK10865 protein disaggregatio 98.7 3.2E-07 7E-12 87.5 13.4 142 19-163 568-834 (857)
154 TIGR03346 chaperone_ClpB ATP-d 98.7 2.8E-07 6.1E-12 88.0 12.2 142 19-163 565-831 (852)
155 PRK13765 ATP-dependent proteas 98.6 4.9E-07 1.1E-11 83.3 13.0 56 9-78 21-76 (637)
156 KOG2035|consensus 98.6 1.7E-07 3.6E-12 77.0 8.8 124 9-149 3-225 (351)
157 PF07728 AAA_5: AAA domain (dy 98.6 4.1E-08 8.9E-13 73.3 4.4 25 54-78 1-25 (139)
158 TIGR01650 PD_CobS cobaltochela 98.6 1.9E-07 4.1E-12 79.2 8.8 42 80-121 181-234 (327)
159 CHL00095 clpC Clp protease ATP 98.6 3.6E-07 7.8E-12 87.0 11.6 72 92-163 704-787 (821)
160 PRK13531 regulatory ATPase Rav 98.6 2.2E-06 4.8E-11 76.2 15.2 42 20-75 21-62 (498)
161 COG0542 clpA ATP-binding subun 98.6 5E-07 1.1E-11 84.0 11.0 142 19-163 491-760 (786)
162 smart00763 AAA_PrkA PrkA AAA d 98.6 1.4E-07 2.9E-12 80.9 6.5 55 18-78 49-104 (361)
163 COG1474 CDC6 Cdc6-related prot 98.6 2.3E-06 4.9E-11 74.2 14.0 156 19-200 17-271 (366)
164 COG1120 FepC ABC-type cobalami 98.6 3.3E-07 7.2E-12 75.2 8.3 98 50-154 26-152 (258)
165 TIGR03345 VI_ClpV1 type VI sec 98.5 9E-07 1.9E-11 84.4 12.2 71 91-162 752-835 (852)
166 PRK07399 DNA polymerase III su 98.5 7.5E-07 1.6E-11 75.7 10.4 49 17-76 2-50 (314)
167 PRK08058 DNA polymerase III su 98.5 2.6E-07 5.6E-12 79.1 7.6 49 17-76 3-52 (329)
168 TIGR00368 Mg chelatase-related 98.5 1.4E-06 3.1E-11 78.3 12.6 45 16-74 189-233 (499)
169 PHA02244 ATPase-like protein 98.5 1.7E-06 3.6E-11 74.5 12.2 26 52-77 119-144 (383)
170 PRK11331 5-methylcytosine-spec 98.5 4.5E-07 9.8E-12 79.8 8.5 45 18-76 174-218 (459)
171 TIGR00678 holB DNA polymerase 98.5 4.5E-07 9.9E-12 71.3 7.7 37 82-119 131-167 (188)
172 COG3638 ABC-type phosphate/pho 98.5 6.8E-07 1.5E-11 71.9 8.6 29 50-78 28-56 (258)
173 TIGR00390 hslU ATP-dependent p 98.5 2.1E-07 4.5E-12 81.2 5.5 62 20-81 13-76 (441)
174 PF06068 TIP49: TIP49 C-termin 98.5 9.8E-07 2.1E-11 75.5 9.4 56 16-78 21-76 (398)
175 COG0714 MoxR-like ATPases [Gen 98.5 1.7E-06 3.6E-11 74.1 10.4 44 21-78 26-69 (329)
176 PRK09862 putative ATP-dependen 98.4 2.2E-06 4.7E-11 77.0 11.2 47 17-77 189-235 (506)
177 COG4608 AppF ABC-type oligopep 98.4 6.7E-07 1.5E-11 73.4 7.3 88 50-155 37-124 (268)
178 PRK05707 DNA polymerase III su 98.4 7.5E-07 1.6E-11 76.1 7.9 40 79-119 138-177 (328)
179 COG4178 ABC-type uncharacteriz 98.4 1.5E-07 3.2E-12 85.3 3.1 101 50-151 417-526 (604)
180 COG3842 PotA ABC-type spermidi 98.4 9.6E-07 2.1E-11 75.7 7.2 99 50-155 29-151 (352)
181 COG1116 TauB ABC-type nitrate/ 98.4 1.4E-06 3E-11 70.7 7.7 99 50-153 27-143 (248)
182 KOG0990|consensus 98.4 2.3E-06 4.9E-11 71.7 9.0 57 8-76 30-86 (360)
183 PRK05201 hslU ATP-dependent pr 98.4 5.2E-07 1.1E-11 78.8 5.4 62 20-81 16-79 (443)
184 COG4619 ABC-type uncharacteriz 98.4 8.9E-07 1.9E-11 68.0 6.0 29 50-78 27-55 (223)
185 COG1125 OpuBA ABC-type proline 98.4 2E-06 4.4E-11 70.0 8.0 104 50-157 25-152 (309)
186 PRK05342 clpX ATP-dependent pr 98.4 6.5E-07 1.4E-11 78.7 5.6 61 21-81 73-137 (412)
187 COG3839 MalK ABC-type sugar tr 98.3 1.4E-06 3.1E-11 74.2 7.4 29 50-78 27-55 (338)
188 COG1123 ATPase components of v 98.3 8.1E-07 1.8E-11 79.6 6.0 102 50-155 315-444 (539)
189 COG0470 HolB ATPase involved i 98.3 2.6E-06 5.7E-11 72.1 8.4 49 19-77 1-49 (325)
190 COG1239 ChlI Mg-chelatase subu 98.3 2.5E-06 5.4E-11 73.9 8.2 52 15-78 13-64 (423)
191 PF07726 AAA_3: ATPase family 98.3 3.8E-07 8.2E-12 67.0 2.7 25 54-78 1-25 (131)
192 PRK15455 PrkA family serine pr 98.3 1.1E-06 2.3E-11 79.5 5.9 56 17-78 74-129 (644)
193 PF03215 Rad17: Rad17 cell cyc 98.3 1E-06 2.3E-11 79.4 5.7 67 7-80 7-73 (519)
194 COG1126 GlnQ ABC-type polar am 98.3 5E-06 1.1E-10 66.2 8.7 100 50-154 26-150 (240)
195 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 3.4E-06 7.3E-11 69.1 7.7 99 50-155 28-154 (254)
196 KOG1942|consensus 98.2 1.7E-05 3.7E-10 66.0 11.2 54 18-78 37-90 (456)
197 PRK12377 putative replication 98.2 2.4E-06 5.1E-11 70.3 6.3 65 3-77 57-126 (248)
198 PF05621 TniB: Bacterial TniB 98.2 5.5E-06 1.2E-10 69.4 8.4 70 90-161 197-273 (302)
199 TIGR00602 rad24 checkpoint pro 98.2 1.5E-06 3.2E-11 80.0 5.3 64 9-79 74-137 (637)
200 TIGR02031 BchD-ChlD magnesium 98.2 1.6E-05 3.6E-10 73.1 12.0 40 81-120 131-174 (589)
201 PRK08118 topology modulation p 98.2 3E-06 6.5E-11 65.6 5.8 70 53-123 2-104 (167)
202 PF13207 AAA_17: AAA domain; P 98.2 1.1E-06 2.4E-11 63.8 3.0 26 55-80 2-27 (121)
203 PRK07261 topology modulation p 98.2 3.5E-06 7.7E-11 65.4 6.0 68 54-121 2-102 (171)
204 cd00009 AAA The AAA+ (ATPases 98.2 3.6E-06 7.8E-11 62.0 5.8 42 23-76 2-43 (151)
205 smart00382 AAA ATPases associa 98.1 1.8E-06 3.9E-11 62.9 3.3 28 52-79 2-29 (148)
206 PF06309 Torsin: Torsin; Inte 98.1 8.7E-06 1.9E-10 59.6 6.7 52 20-76 26-77 (127)
207 COG4525 TauB ABC-type taurine 98.1 6.6E-06 1.4E-10 64.7 6.3 98 50-152 29-144 (259)
208 TIGR00382 clpX endopeptidase C 98.1 4.2E-06 9.2E-11 73.4 5.4 60 21-80 79-144 (413)
209 COG2884 FtsE Predicted ATPase 98.1 1.9E-05 4.1E-10 61.8 8.3 29 50-78 26-54 (223)
210 PRK04132 replication factor C 98.1 3.3E-05 7.2E-10 73.2 11.4 61 79-140 662-723 (846)
211 PRK11432 fbpC ferric transport 98.1 5.4E-06 1.2E-10 71.6 5.5 29 50-78 30-58 (351)
212 COG1136 SalX ABC-type antimicr 98.1 4.8E-06 1E-10 67.1 4.6 29 50-78 29-57 (226)
213 PF13177 DNA_pol3_delta2: DNA 98.1 8.9E-06 1.9E-10 62.6 5.9 44 23-77 1-44 (162)
214 COG1855 ATPase (PilT family) [ 98.1 4.5E-06 9.7E-11 72.9 4.6 62 12-90 240-303 (604)
215 PRK07993 DNA polymerase III su 98.1 1.9E-05 4.2E-10 67.7 8.3 38 79-117 140-177 (334)
216 PTZ00111 DNA replication licen 98.0 0.00015 3.2E-09 68.9 14.5 22 53-74 493-514 (915)
217 PRK07952 DNA replication prote 98.0 1.1E-05 2.4E-10 66.1 6.3 64 4-77 56-124 (244)
218 PRK06871 DNA polymerase III su 98.0 2.4E-05 5.2E-10 66.7 8.4 39 79-118 139-177 (325)
219 KOG0064|consensus 98.0 1.5E-05 3.2E-10 71.0 7.1 29 50-78 506-534 (728)
220 PF12775 AAA_7: P-loop contain 98.0 1.1E-05 2.3E-10 67.3 5.5 40 82-122 153-195 (272)
221 COG4172 ABC-type uncharacteriz 98.0 3.3E-05 7E-10 66.9 8.4 100 50-154 311-440 (534)
222 COG1241 MCM2 Predicted ATPase 98.0 0.00015 3.2E-09 67.2 13.1 58 19-78 286-345 (682)
223 PRK08116 hypothetical protein; 98.0 1.3E-05 2.9E-10 66.7 5.9 67 4-77 69-139 (268)
224 PRK00131 aroK shikimate kinase 98.0 6.1E-06 1.3E-10 63.5 3.6 31 51-81 3-33 (175)
225 TIGR02314 ABC_MetN D-methionin 98.0 9.7E-06 2.1E-10 69.8 5.1 29 50-78 29-57 (343)
226 COG4987 CydC ABC-type transpor 98.0 8E-06 1.7E-10 72.7 4.6 44 37-80 346-392 (573)
227 PRK06964 DNA polymerase III su 98.0 2E-05 4.3E-10 67.7 7.0 38 80-118 165-202 (342)
228 PRK06090 DNA polymerase III su 98.0 3.5E-05 7.6E-10 65.6 8.3 38 79-117 140-177 (319)
229 COG0563 Adk Adenylate kinase a 98.0 1.7E-05 3.6E-10 62.0 5.9 71 54-124 2-104 (178)
230 TIGR03265 PhnT2 putative 2-ami 98.0 2.7E-05 5.8E-10 67.3 7.5 29 50-78 28-56 (353)
231 cd03269 ABC_putative_ATPase Th 98.0 4.2E-05 9.1E-10 61.0 8.0 29 50-78 24-52 (210)
232 PF07724 AAA_2: AAA domain (Cd 97.9 8.6E-06 1.9E-10 63.3 3.8 27 51-77 2-28 (171)
233 PRK11650 ugpC glycerol-3-phosp 97.9 3E-05 6.5E-10 67.1 7.5 29 50-78 28-56 (356)
234 PF13671 AAA_33: AAA domain; P 97.9 5.8E-06 1.3E-10 61.6 2.7 26 55-80 2-27 (143)
235 PRK11607 potG putrescine trans 97.9 2.8E-05 6.2E-10 67.8 7.3 29 50-78 43-71 (377)
236 PF01695 IstB_IS21: IstB-like 97.9 1.4E-05 3E-10 62.6 4.8 27 51-77 46-72 (178)
237 TIGR02868 CydC thiol reductant 97.9 7.8E-06 1.7E-10 74.2 3.6 30 50-79 359-388 (529)
238 TIGR00960 3a0501s02 Type II (G 97.9 4.7E-05 1E-09 61.0 7.7 29 50-78 27-55 (216)
239 PRK08939 primosomal protein Dn 97.9 1.1E-05 2.4E-10 68.3 4.2 27 51-77 155-181 (306)
240 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 4.4E-05 9.6E-10 61.2 7.5 29 50-78 28-56 (218)
241 PF13191 AAA_16: AAA ATPase do 97.9 1.5E-05 3.2E-10 61.8 4.6 49 21-78 2-50 (185)
242 PTZ00202 tuzin; Provisional 97.9 0.00011 2.3E-09 64.8 10.0 54 15-77 258-311 (550)
243 PRK08699 DNA polymerase III su 97.9 3.4E-05 7.5E-10 65.9 6.8 27 50-76 19-45 (325)
244 PRK08769 DNA polymerase III su 97.9 6.5E-05 1.4E-09 64.0 8.4 38 79-117 145-182 (319)
245 cd03293 ABC_NrtD_SsuB_transpor 97.9 4.9E-05 1.1E-09 61.1 7.4 29 50-78 28-56 (220)
246 PRK09452 potA putrescine/sperm 97.9 4E-05 8.6E-10 66.8 7.3 29 50-78 38-66 (375)
247 COG1118 CysA ABC-type sulfate/ 97.9 4.2E-05 9E-10 64.0 6.9 29 50-78 26-54 (345)
248 cd03266 ABC_NatA_sodium_export 97.9 8.1E-05 1.8E-09 59.7 8.5 29 50-78 29-57 (218)
249 cd03292 ABC_FtsE_transporter F 97.9 6.3E-05 1.4E-09 60.1 7.7 29 50-78 25-53 (214)
250 TIGR03864 PQQ_ABC_ATP ABC tran 97.9 5.5E-05 1.2E-09 61.6 7.2 29 50-78 25-53 (236)
251 PRK11000 maltose/maltodextrin 97.8 5E-05 1.1E-09 66.1 7.3 29 50-78 27-55 (369)
252 KOG0480|consensus 97.8 0.00017 3.7E-09 65.5 10.6 59 18-78 344-404 (764)
253 KOG1514|consensus 97.8 0.00031 6.6E-09 64.5 12.3 118 80-208 544-669 (767)
254 PRK11308 dppF dipeptide transp 97.8 6.4E-05 1.4E-09 64.3 7.7 29 50-78 39-67 (327)
255 PF10662 PduV-EutP: Ethanolami 97.8 3.8E-05 8.3E-10 57.7 5.3 74 53-126 2-121 (143)
256 TIGR01166 cbiO cobalt transpor 97.8 7.6E-05 1.6E-09 58.6 7.4 29 50-78 16-44 (190)
257 PRK09473 oppD oligopeptide tra 97.8 4.2E-05 9.2E-10 65.5 6.3 29 50-78 40-68 (330)
258 TIGR01186 proV glycine betaine 97.8 5.6E-05 1.2E-09 65.5 7.1 29 50-78 17-45 (363)
259 PRK11022 dppD dipeptide transp 97.8 5E-05 1.1E-09 65.0 6.7 28 50-77 31-58 (326)
260 cd03265 ABC_DrrA DrrA is the A 97.8 9.2E-05 2E-09 59.5 7.8 29 50-78 24-52 (220)
261 cd03225 ABC_cobalt_CbiO_domain 97.8 0.0001 2.2E-09 58.9 8.0 29 50-78 25-53 (211)
262 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 1.6E-05 3.4E-10 62.0 3.2 27 55-81 2-28 (183)
263 KOG0060|consensus 97.8 2E-05 4.4E-10 70.7 4.2 29 51-79 460-488 (659)
264 PRK03839 putative kinase; Prov 97.8 1.6E-05 3.5E-10 61.9 3.2 28 54-81 2-29 (180)
265 cd03264 ABC_drug_resistance_li 97.8 7.7E-05 1.7E-09 59.5 7.2 28 50-78 24-51 (211)
266 PRK15079 oligopeptide ABC tran 97.8 1.9E-05 4.2E-10 67.6 4.0 29 50-78 45-73 (331)
267 cd03301 ABC_MalK_N The N-termi 97.8 7.9E-05 1.7E-09 59.5 7.2 29 50-78 24-52 (213)
268 PF00910 RNA_helicase: RNA hel 97.8 1.7E-05 3.8E-10 56.6 3.0 25 55-79 1-25 (107)
269 PRK10851 sulfate/thiosulfate t 97.8 9.4E-05 2E-09 64.0 8.0 29 50-78 26-54 (353)
270 cd03259 ABC_Carb_Solutes_like 97.8 9.3E-05 2E-09 59.2 7.5 29 50-78 24-52 (213)
271 TIGR01313 therm_gnt_kin carboh 97.8 1.4E-05 3E-10 61.2 2.6 27 55-81 1-27 (163)
272 cd03218 ABC_YhbG The ABC trans 97.8 0.0001 2.2E-09 59.7 7.8 29 50-78 24-52 (232)
273 COG1122 CbiO ABC-type cobalt t 97.8 1.3E-05 2.7E-10 65.4 2.3 31 50-80 28-58 (235)
274 cd00464 SK Shikimate kinase (S 97.8 2E-05 4.4E-10 59.4 3.2 28 54-81 1-28 (154)
275 PRK13949 shikimate kinase; Pro 97.8 2.2E-05 4.7E-10 60.9 3.4 30 53-82 2-31 (169)
276 PRK06835 DNA replication prote 97.8 4.8E-05 1E-09 65.1 5.8 25 52-76 183-207 (329)
277 COG1484 DnaC DNA replication p 97.8 6.3E-05 1.4E-09 62.1 6.3 26 52-77 105-130 (254)
278 cd03263 ABC_subfamily_A The AB 97.8 0.00013 2.8E-09 58.6 8.0 29 50-78 26-54 (220)
279 PRK14532 adenylate kinase; Pro 97.8 1.9E-05 4.1E-10 61.9 3.0 28 54-81 2-29 (188)
280 PRK14257 phosphate ABC transpo 97.8 0.00011 2.4E-09 62.9 7.9 28 50-77 106-133 (329)
281 PRK14531 adenylate kinase; Pro 97.8 2.5E-05 5.3E-10 61.2 3.6 29 53-81 3-31 (183)
282 PRK13657 cyclic beta-1,2-gluca 97.8 3.4E-05 7.4E-10 71.0 5.0 29 50-78 359-387 (588)
283 PRK13947 shikimate kinase; Pro 97.8 2.3E-05 5E-10 60.4 3.3 29 54-82 3-31 (171)
284 cd03300 ABC_PotA_N PotA is an 97.8 0.00012 2.6E-09 59.4 7.7 29 50-78 24-52 (232)
285 cd02019 NK Nucleoside/nucleoti 97.8 3E-05 6.5E-10 50.9 3.4 22 55-76 2-23 (69)
286 KOG2680|consensus 97.7 0.00048 1E-08 57.7 11.1 92 86-195 338-430 (454)
287 PF13238 AAA_18: AAA domain; P 97.7 2.5E-05 5.5E-10 56.8 3.3 22 55-76 1-22 (129)
288 COG1221 PspF Transcriptional r 97.7 0.00022 4.8E-09 62.2 9.5 51 14-74 73-123 (403)
289 cd03296 ABC_CysA_sulfate_impor 97.7 0.00014 3.1E-09 59.2 8.0 29 50-78 26-54 (239)
290 cd00227 CPT Chloramphenicol (C 97.7 3E-05 6.4E-10 60.3 3.8 27 52-78 2-28 (175)
291 KOG0478|consensus 97.7 0.00046 1E-08 63.2 11.7 57 20-78 430-488 (804)
292 TIGR03258 PhnT 2-aminoethylpho 97.7 0.00012 2.5E-09 63.6 7.8 30 50-79 29-58 (362)
293 PRK11174 cysteine/glutathione 97.7 5.3E-05 1.1E-09 69.7 5.9 27 50-76 374-400 (588)
294 PRK14530 adenylate kinase; Pro 97.7 2.7E-05 5.9E-10 62.5 3.5 29 53-81 4-32 (215)
295 PRK00300 gmk guanylate kinase; 97.7 2.9E-05 6.3E-10 61.7 3.6 28 50-77 3-30 (205)
296 PRK10908 cell division protein 97.7 0.00014 2.9E-09 58.6 7.5 29 50-78 26-54 (222)
297 COG1219 ClpX ATP-dependent pro 97.7 3.3E-05 7.2E-10 64.9 4.0 29 53-81 98-126 (408)
298 PRK13632 cbiO cobalt transport 97.7 0.00015 3.2E-09 60.3 8.0 29 50-78 33-61 (271)
299 PRK06526 transposase; Provisio 97.7 2.7E-05 5.9E-10 64.3 3.5 25 52-76 98-122 (254)
300 PF13401 AAA_22: AAA domain; P 97.7 3.5E-05 7.5E-10 56.5 3.7 26 52-77 4-29 (131)
301 PRK13647 cbiO cobalt transport 97.7 0.00013 2.8E-09 60.9 7.5 29 50-78 29-57 (274)
302 cd01130 VirB11-like_ATPase Typ 97.7 4.1E-05 8.8E-10 60.2 4.3 29 50-78 23-51 (186)
303 cd03295 ABC_OpuCA_Osmoprotecti 97.7 0.00018 4E-09 58.7 8.3 29 50-78 25-53 (242)
304 TIGR01360 aden_kin_iso1 adenyl 97.7 2.8E-05 6.1E-10 60.6 3.3 29 53-81 4-32 (188)
305 TIGR02974 phageshock_pspF psp 97.7 0.00033 7.1E-09 60.1 9.9 44 21-74 1-44 (329)
306 cd02021 GntK Gluconate kinase 97.7 2.6E-05 5.7E-10 58.8 2.9 27 55-81 2-28 (150)
307 cd00820 PEPCK_HprK Phosphoenol 97.7 3.3E-05 7.2E-10 55.2 3.2 24 50-73 13-36 (107)
308 TIGR00972 3a0107s01c2 phosphat 97.7 0.00021 4.5E-09 58.5 8.4 29 50-78 25-53 (247)
309 COG1131 CcmA ABC-type multidru 97.7 0.00013 2.9E-09 61.5 7.3 30 50-79 29-58 (293)
310 TIGR00968 3a0106s01 sulfate AB 97.7 0.00017 3.8E-09 58.7 7.8 29 50-78 24-52 (237)
311 COG0444 DppD ABC-type dipeptid 97.7 0.00018 3.9E-09 60.5 8.0 28 50-77 29-56 (316)
312 TIGR02322 phosphon_PhnN phosph 97.7 3.4E-05 7.4E-10 59.9 3.5 25 53-77 2-26 (179)
313 TIGR00958 3a01208 Conjugate Tr 97.7 5.2E-05 1.1E-09 71.4 5.3 30 50-79 505-534 (711)
314 PRK10078 ribose 1,5-bisphospho 97.7 2.7E-05 5.9E-10 61.1 2.9 26 53-78 3-28 (186)
315 cd03214 ABC_Iron-Siderophores_ 97.7 7.5E-05 1.6E-09 58.3 5.4 29 50-78 23-51 (180)
316 PRK06762 hypothetical protein; 97.7 3.8E-05 8.3E-10 58.9 3.6 26 52-77 2-27 (166)
317 PRK06217 hypothetical protein; 97.7 3.1E-05 6.7E-10 60.6 3.1 28 54-81 3-30 (183)
318 PRK08181 transposase; Validate 97.7 3.4E-05 7.4E-10 64.2 3.5 25 52-76 106-130 (269)
319 cd03298 ABC_ThiQ_thiamine_tran 97.7 0.00024 5.2E-09 56.7 8.3 29 50-78 22-50 (211)
320 PRK09825 idnK D-gluconate kina 97.7 4.1E-05 8.8E-10 59.8 3.7 30 52-81 3-32 (176)
321 TIGR03797 NHPM_micro_ABC2 NHPM 97.7 4.5E-05 9.9E-10 71.5 4.6 30 50-79 477-506 (686)
322 PRK13546 teichoic acids export 97.7 0.00018 3.9E-09 59.7 7.7 29 50-78 48-76 (264)
323 PHA00729 NTP-binding motif con 97.7 3.7E-05 8.1E-10 62.1 3.4 25 53-77 18-42 (226)
324 COG0396 sufC Cysteine desulfur 97.7 0.00018 4E-09 57.9 7.3 29 50-78 28-56 (251)
325 PRK05541 adenylylsulfate kinas 97.7 4.5E-05 9.7E-10 59.2 3.8 27 51-77 6-32 (176)
326 KOG1970|consensus 97.7 5.1E-05 1.1E-09 67.8 4.5 67 9-80 72-138 (634)
327 COG4136 ABC-type uncharacteriz 97.7 0.00019 4.2E-09 54.3 6.9 102 50-157 26-151 (213)
328 TIGR01188 drrA daunorubicin re 97.7 0.0002 4.2E-09 60.6 7.9 29 50-78 17-45 (302)
329 PRK06547 hypothetical protein; 97.7 4.6E-05 1E-09 59.2 3.7 31 51-81 14-44 (172)
330 COG4988 CydD ABC-type transpor 97.7 0.00013 2.8E-09 65.7 7.0 31 50-80 345-375 (559)
331 PTZ00088 adenylate kinase 1; P 97.7 4.1E-05 8.8E-10 62.3 3.5 29 53-81 7-35 (229)
332 PRK14237 phosphate transporter 97.7 0.00028 6.1E-09 58.6 8.7 28 50-77 44-71 (267)
333 TIGR00150 HI0065_YjeE ATPase, 97.7 5.2E-05 1.1E-09 56.4 3.7 29 50-78 20-48 (133)
334 PRK09183 transposase/IS protei 97.7 4.2E-05 9.1E-10 63.4 3.6 26 51-76 101-126 (259)
335 cd03294 ABC_Pro_Gly_Bertaine T 97.6 0.00025 5.4E-09 59.0 8.2 29 50-78 48-76 (269)
336 cd01428 ADK Adenylate kinase ( 97.6 3.6E-05 7.9E-10 60.4 3.0 27 55-81 2-28 (194)
337 PRK11160 cysteine/glutathione 97.6 7E-05 1.5E-09 68.8 5.3 30 50-79 364-393 (574)
338 PRK13650 cbiO cobalt transport 97.6 0.00022 4.7E-09 59.6 7.9 29 50-78 31-59 (279)
339 TIGR00235 udk uridine kinase. 97.6 4.6E-05 1E-09 60.8 3.7 27 52-78 6-32 (207)
340 TIGR02857 CydD thiol reductant 97.6 8.4E-05 1.8E-09 67.5 5.7 30 50-79 346-375 (529)
341 PRK11144 modC molybdate transp 97.6 0.00019 4.1E-09 62.0 7.6 29 50-78 22-50 (352)
342 cd03213 ABCG_EPDR ABCG transpo 97.6 0.00024 5.3E-09 56.1 7.6 27 50-76 33-59 (194)
343 cd02020 CMPK Cytidine monophos 97.6 4.6E-05 9.9E-10 56.9 3.2 29 55-83 2-30 (147)
344 PF00005 ABC_tran: ABC transpo 97.6 2.5E-05 5.4E-10 57.8 1.7 29 50-78 9-37 (137)
345 PRK14738 gmk guanylate kinase; 97.6 4.6E-05 1E-09 60.9 3.4 33 42-75 4-36 (206)
346 COG1102 Cmk Cytidylate kinase 97.6 4.1E-05 8.8E-10 58.3 2.8 27 55-81 3-29 (179)
347 PRK13548 hmuV hemin importer A 97.6 0.00018 4E-09 59.4 7.0 29 50-78 26-54 (258)
348 TIGR03796 NHPM_micro_ABC1 NHPM 97.6 0.00011 2.3E-09 69.2 6.3 30 50-79 503-532 (710)
349 PRK10070 glycine betaine trans 97.6 0.0002 4.4E-09 62.9 7.6 29 50-78 52-80 (400)
350 PRK11153 metN DL-methionine tr 97.6 0.00022 4.7E-09 61.5 7.7 29 50-78 29-57 (343)
351 PRK13646 cbiO cobalt transport 97.6 0.00029 6.3E-09 59.1 8.3 29 50-78 31-59 (286)
352 PRK06921 hypothetical protein; 97.6 5.1E-05 1.1E-09 63.1 3.6 26 52-77 117-142 (266)
353 PRK14527 adenylate kinase; Pro 97.6 5.9E-05 1.3E-09 59.4 3.8 29 52-80 6-34 (191)
354 PLN02200 adenylate kinase fami 97.6 5.5E-05 1.2E-09 61.7 3.6 30 52-81 43-72 (234)
355 PRK00625 shikimate kinase; Pro 97.6 5E-05 1.1E-09 59.1 3.2 28 54-81 2-29 (173)
356 COG3840 ThiQ ABC-type thiamine 97.6 0.00017 3.6E-09 56.3 6.0 30 51-80 24-53 (231)
357 PF08298 AAA_PrkA: PrkA AAA do 97.6 0.00015 3.3E-09 62.0 6.3 54 19-78 61-114 (358)
358 PF13245 AAA_19: Part of AAA d 97.6 7.6E-05 1.6E-09 50.0 3.6 24 53-76 11-35 (76)
359 PRK02496 adk adenylate kinase; 97.6 5.4E-05 1.2E-09 59.2 3.3 26 54-79 3-28 (184)
360 PRK11176 lipid transporter ATP 97.6 0.00016 3.4E-09 66.5 6.9 30 50-79 367-396 (582)
361 PRK13948 shikimate kinase; Pro 97.6 6.3E-05 1.4E-09 59.0 3.6 32 50-81 8-39 (182)
362 TIGR01351 adk adenylate kinase 97.6 4.9E-05 1.1E-09 60.8 3.1 28 55-82 2-29 (210)
363 PRK10790 putative multidrug tr 97.6 0.00011 2.4E-09 67.7 5.8 30 50-79 365-394 (592)
364 PRK14528 adenylate kinase; Pro 97.6 6E-05 1.3E-09 59.3 3.5 29 53-81 2-30 (186)
365 PRK08233 hypothetical protein; 97.6 5.3E-05 1.1E-09 58.8 3.1 25 53-77 4-28 (182)
366 TIGR03522 GldA_ABC_ATP gliding 97.6 0.00025 5.5E-09 59.9 7.4 29 50-78 26-54 (301)
367 cd03299 ABC_ModC_like Archeal 97.6 0.00034 7.5E-09 56.9 7.9 29 50-78 23-51 (235)
368 PRK13639 cbiO cobalt transport 97.6 0.00022 4.8E-09 59.5 6.9 29 50-78 26-54 (275)
369 PRK13643 cbiO cobalt transport 97.6 0.00028 6E-09 59.3 7.6 29 50-78 30-58 (288)
370 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00013 2.9E-09 60.5 5.5 50 15-77 56-105 (264)
371 PF00158 Sigma54_activat: Sigm 97.6 0.00011 2.5E-09 56.8 4.8 46 21-76 1-46 (168)
372 PRK13637 cbiO cobalt transport 97.6 0.00026 5.7E-09 59.4 7.3 29 50-78 31-59 (287)
373 PF00485 PRK: Phosphoribulokin 97.6 6.4E-05 1.4E-09 59.4 3.3 24 55-78 2-25 (194)
374 PRK05057 aroK shikimate kinase 97.6 6.9E-05 1.5E-09 58.2 3.4 29 53-81 5-33 (172)
375 PRK05480 uridine/cytidine kina 97.6 7.8E-05 1.7E-09 59.5 3.8 26 52-77 6-31 (209)
376 TIGR02315 ABC_phnC phosphonate 97.6 5.4E-05 1.2E-09 61.8 2.9 29 50-78 26-54 (243)
377 cd03262 ABC_HisP_GlnQ_permease 97.6 5.5E-05 1.2E-09 60.4 2.9 29 50-78 24-52 (213)
378 PRK04040 adenylate kinase; Pro 97.6 7.6E-05 1.7E-09 58.8 3.6 26 52-77 2-27 (188)
379 PRK13635 cbiO cobalt transport 97.6 0.00035 7.6E-09 58.4 7.8 29 50-78 31-59 (279)
380 COG1127 Ttg2A ABC-type transpo 97.5 0.0005 1.1E-08 55.8 8.3 29 50-78 32-60 (263)
381 PRK13633 cobalt transporter AT 97.5 0.00044 9.5E-09 57.8 8.4 29 50-78 34-62 (280)
382 PRK00279 adk adenylate kinase; 97.5 7E-05 1.5E-09 60.1 3.4 29 54-82 2-30 (215)
383 TIGR02204 MsbA_rel ABC transpo 97.5 0.00019 4.1E-09 65.8 6.7 30 50-79 364-393 (576)
384 TIGR03263 guanyl_kin guanylate 97.5 5.7E-05 1.2E-09 58.7 2.8 27 53-79 2-28 (180)
385 COG1123 ATPase components of v 97.5 0.00025 5.4E-09 63.9 7.1 103 50-155 33-169 (539)
386 cd03226 ABC_cobalt_CbiO_domain 97.5 5.7E-05 1.2E-09 60.1 2.8 29 50-78 24-52 (205)
387 COG4088 Predicted nucleotide k 97.5 0.00013 2.8E-09 57.9 4.6 25 54-78 3-27 (261)
388 PF13555 AAA_29: P-loop contai 97.5 0.0001 2.2E-09 47.3 3.4 23 54-76 25-47 (62)
389 cd03258 ABC_MetN_methionine_tr 97.5 5.9E-05 1.3E-09 61.2 2.9 29 50-78 29-57 (233)
390 cd03261 ABC_Org_Solvent_Resist 97.5 5.8E-05 1.3E-09 61.3 2.7 29 50-78 24-52 (235)
391 cd03222 ABC_RNaseL_inhibitor T 97.5 6.5E-05 1.4E-09 58.7 2.9 29 50-78 23-51 (177)
392 cd02023 UMPK Uridine monophosp 97.5 7.9E-05 1.7E-09 58.9 3.3 22 55-76 2-23 (198)
393 cd03224 ABC_TM1139_LivF_branch 97.5 5.7E-05 1.2E-09 60.7 2.6 29 50-78 24-52 (222)
394 COG1132 MdlB ABC-type multidru 97.5 0.0004 8.7E-09 63.7 8.4 29 50-78 353-381 (567)
395 TIGR03608 L_ocin_972_ABC putat 97.5 6.5E-05 1.4E-09 59.7 2.8 29 50-78 22-50 (206)
396 PF00437 T2SE: Type II/IV secr 97.5 0.00011 2.4E-09 61.0 4.3 57 13-79 98-154 (270)
397 COG4133 CcmA ABC-type transpor 97.5 6.8E-05 1.5E-09 58.6 2.7 29 50-78 26-54 (209)
398 PHA02624 large T antigen; Prov 97.5 0.00011 2.5E-09 66.8 4.6 26 53-78 432-457 (647)
399 COG1220 HslU ATP-dependent pro 97.5 0.00013 2.9E-09 61.8 4.7 61 21-81 17-79 (444)
400 PRK13541 cytochrome c biogenes 97.5 7E-05 1.5E-09 59.2 2.9 29 50-78 24-52 (195)
401 cd03216 ABC_Carb_Monos_I This 97.5 6.5E-05 1.4E-09 57.7 2.7 29 50-78 24-52 (163)
402 PRK14526 adenylate kinase; Pro 97.5 8.2E-05 1.8E-09 59.8 3.3 28 54-81 2-29 (211)
403 TIGR02673 FtsE cell division A 97.5 6.6E-05 1.4E-09 60.0 2.8 29 50-78 26-54 (214)
404 PRK13406 bchD magnesium chelat 97.5 0.0022 4.7E-08 59.0 12.9 25 53-77 26-50 (584)
405 cd03256 ABC_PhnC_transporter A 97.5 6.7E-05 1.5E-09 61.1 2.9 29 50-78 25-53 (241)
406 TIGR03410 urea_trans_UrtE urea 97.5 6.3E-05 1.4E-09 60.9 2.7 29 50-78 24-52 (230)
407 COG0703 AroK Shikimate kinase 97.5 9.2E-05 2E-09 57.2 3.4 40 53-99 3-42 (172)
408 PRK10247 putative ABC transpor 97.5 7.6E-05 1.6E-09 60.3 3.1 29 50-78 31-59 (225)
409 cd03260 ABC_PstB_phosphate_tra 97.5 9.3E-05 2E-09 59.8 3.6 27 50-76 24-50 (227)
410 PLN02674 adenylate kinase 97.5 9.5E-05 2.1E-09 60.6 3.6 31 51-81 30-60 (244)
411 cd03219 ABC_Mj1267_LivG_branch 97.5 6.2E-05 1.3E-09 61.1 2.5 29 50-78 24-52 (236)
412 cd03247 ABCC_cytochrome_bd The 97.5 8.1E-05 1.7E-09 57.9 3.0 29 50-78 26-54 (178)
413 TIGR02211 LolD_lipo_ex lipopro 97.5 7.2E-05 1.6E-09 60.1 2.8 29 50-78 29-57 (221)
414 cd03223 ABCD_peroxisomal_ALDP 97.5 7.8E-05 1.7E-09 57.5 2.9 29 50-78 25-53 (166)
415 PRK00889 adenylylsulfate kinas 97.5 0.00012 2.5E-09 56.8 3.9 27 51-77 3-29 (175)
416 PRK13652 cbiO cobalt transport 97.5 0.00047 1E-08 57.6 7.8 29 50-78 28-56 (277)
417 cd03246 ABCC_Protease_Secretio 97.5 9.5E-05 2.1E-09 57.3 3.4 29 50-78 26-54 (173)
418 cd00071 GMPK Guanosine monopho 97.5 8.4E-05 1.8E-09 55.5 2.9 24 55-78 2-25 (137)
419 cd03228 ABCC_MRP_Like The MRP 97.5 8.7E-05 1.9E-09 57.4 3.1 29 50-78 26-54 (171)
420 cd03230 ABC_DR_subfamily_A Thi 97.5 7.5E-05 1.6E-09 57.9 2.7 29 50-78 24-52 (173)
421 PRK13946 shikimate kinase; Pro 97.5 0.0001 2.2E-09 57.8 3.5 30 52-81 10-39 (184)
422 cd03235 ABC_Metallic_Cations A 97.5 6.7E-05 1.5E-09 60.0 2.5 29 50-78 23-51 (213)
423 cd01131 PilT Pilus retraction 97.5 9.5E-05 2.1E-09 58.7 3.3 24 54-77 3-26 (198)
424 PRK11629 lolD lipoprotein tran 97.5 8E-05 1.7E-09 60.5 2.9 29 50-78 33-61 (233)
425 TIGR03499 FlhF flagellar biosy 97.5 0.00024 5.3E-09 59.5 5.7 25 52-76 194-218 (282)
426 PF13086 AAA_11: AAA domain; P 97.5 0.00017 3.7E-09 57.6 4.7 22 55-76 20-41 (236)
427 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 8.1E-05 1.8E-09 56.1 2.6 29 50-78 24-52 (144)
428 cd03238 ABC_UvrA The excision 97.5 0.00011 2.4E-09 57.3 3.4 25 50-74 19-43 (176)
429 PRK13540 cytochrome c biogenes 97.5 8.9E-05 1.9E-09 58.8 2.9 29 50-78 25-53 (200)
430 PF00406 ADK: Adenylate kinase 97.5 8E-05 1.7E-09 56.3 2.6 25 57-81 1-25 (151)
431 cd03267 ABC_NatA_like Similar 97.5 8.5E-05 1.9E-09 60.5 2.9 29 50-78 45-73 (236)
432 PRK13636 cbiO cobalt transport 97.5 0.00053 1.2E-08 57.4 7.7 29 50-78 30-58 (283)
433 cd03229 ABC_Class3 This class 97.5 8.9E-05 1.9E-09 57.7 2.9 29 50-78 24-52 (178)
434 PRK10416 signal recognition pa 97.5 0.00031 6.7E-09 59.9 6.3 28 51-78 113-140 (318)
435 TIGR01193 bacteriocin_ABC ABC- 97.5 0.00022 4.8E-09 67.1 6.0 30 50-79 498-527 (708)
436 PRK03731 aroL shikimate kinase 97.5 0.00011 2.5E-09 56.6 3.4 29 53-81 3-31 (171)
437 PRK11124 artP arginine transpo 97.4 8.7E-05 1.9E-09 60.6 2.9 29 50-78 26-54 (242)
438 PRK10584 putative ABC transpor 97.4 9.2E-05 2E-09 59.8 3.0 29 50-78 34-62 (228)
439 PRK11248 tauB taurine transpor 97.4 8.7E-05 1.9E-09 61.2 2.8 29 50-78 25-53 (255)
440 cd03257 ABC_NikE_OppD_transpor 97.4 8.3E-05 1.8E-09 60.0 2.6 29 50-78 29-57 (228)
441 TIGR02203 MsbA_lipidA lipid A 97.4 0.00068 1.5E-08 62.1 8.9 29 50-78 356-384 (571)
442 KOG3347|consensus 97.4 0.00011 2.3E-09 55.4 2.9 68 53-122 8-75 (176)
443 PRK13764 ATPase; Provisional 97.4 0.00016 3.5E-09 66.3 4.7 27 52-78 257-283 (602)
444 TIGR02533 type_II_gspE general 97.4 0.00018 4E-09 64.7 5.0 51 14-77 217-267 (486)
445 PRK09270 nucleoside triphospha 97.4 0.00053 1.2E-08 55.6 7.3 29 51-79 32-60 (229)
446 TIGR01187 potA spermidine/putr 97.4 0.00029 6.2E-09 60.3 5.9 22 57-78 1-22 (325)
447 COG2804 PulE Type II secretory 97.4 0.00022 4.7E-09 63.5 5.2 61 5-78 224-284 (500)
448 cd01120 RecA-like_NTPases RecA 97.4 0.00012 2.6E-09 55.1 3.2 23 55-77 2-24 (165)
449 COG4167 SapF ABC-type antimicr 97.4 0.00088 1.9E-08 52.5 7.9 137 51-216 38-202 (267)
450 cd03254 ABCC_Glucan_exporter_l 97.4 9.9E-05 2.2E-09 59.6 2.9 29 50-78 27-55 (229)
451 cd03268 ABC_BcrA_bacitracin_re 97.4 9.8E-05 2.1E-09 58.8 2.8 29 50-78 24-52 (208)
452 PLN03211 ABC transporter G-25; 97.4 0.0002 4.4E-09 66.8 5.2 28 50-77 92-119 (659)
453 cd03215 ABC_Carb_Monos_II This 97.4 9.3E-05 2E-09 57.8 2.6 29 50-78 24-52 (182)
454 PLN03232 ABC transporter C fam 97.4 0.0002 4.3E-09 72.6 5.5 100 50-153 641-753 (1495)
455 COG3604 FhlA Transcriptional r 97.4 0.0015 3.3E-08 58.0 10.3 53 12-74 216-268 (550)
456 TIGR01618 phage_P_loop phage n 97.4 9.1E-05 2E-09 59.8 2.5 25 50-74 10-34 (220)
457 PRK10436 hypothetical protein; 97.4 0.00025 5.4E-09 63.4 5.3 52 13-77 192-243 (462)
458 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00012 2.5E-09 59.4 3.0 29 50-78 26-54 (234)
459 PRK14247 phosphate ABC transpo 97.4 0.00012 2.6E-09 60.1 3.1 28 50-77 27-54 (250)
460 PRK10522 multidrug transporter 97.4 0.00023 5E-09 65.0 5.3 30 50-79 347-376 (547)
461 TIGR03375 type_I_sec_LssB type 97.4 0.00047 1E-08 64.8 7.5 30 50-79 489-518 (694)
462 cd03234 ABCG_White The White s 97.4 0.00011 2.4E-09 59.3 2.9 28 50-77 31-58 (226)
463 COG1936 Predicted nucleotide k 97.4 0.00013 2.8E-09 56.2 3.0 24 54-78 2-25 (180)
464 PRK10895 lipopolysaccharide AB 97.4 0.00011 2.3E-09 60.0 2.7 29 50-78 27-55 (241)
465 PRK11247 ssuB aliphatic sulfon 97.4 0.00011 2.4E-09 60.8 2.9 29 50-78 36-64 (257)
466 PF01583 APS_kinase: Adenylyls 97.4 0.00029 6.2E-09 53.8 4.9 60 53-119 3-63 (156)
467 PRK13538 cytochrome c biogenes 97.4 0.00011 2.4E-09 58.4 2.8 29 50-78 25-53 (204)
468 PRK15177 Vi polysaccharide exp 97.4 0.00011 2.4E-09 59.0 2.7 29 50-78 11-39 (213)
469 TIGR03415 ABC_choXWV_ATP choli 97.4 0.00055 1.2E-08 59.8 7.2 29 50-78 48-76 (382)
470 cd02027 APSK Adenosine 5'-phos 97.4 0.00015 3.3E-09 54.9 3.4 23 55-77 2-24 (149)
471 PRK10771 thiQ thiamine transpo 97.4 0.00011 2.4E-09 59.6 2.7 29 50-78 23-51 (232)
472 TIGR02770 nickel_nikD nickel i 97.4 0.00012 2.5E-09 59.4 2.8 29 50-78 10-38 (230)
473 TIGR03005 ectoine_ehuA ectoine 97.4 0.00011 2.5E-09 60.3 2.8 29 50-78 24-52 (252)
474 PF05729 NACHT: NACHT domain 97.4 0.00016 3.5E-09 54.7 3.4 24 54-77 2-25 (166)
475 COG0194 Gmk Guanylate kinase [ 97.4 0.00016 3.6E-09 56.3 3.5 36 52-87 4-41 (191)
476 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.00012 2.7E-09 59.4 3.0 29 50-78 27-55 (238)
477 TIGR02323 CP_lyasePhnK phospho 97.4 0.00011 2.4E-09 60.4 2.6 29 50-78 27-55 (253)
478 PF13173 AAA_14: AAA domain 97.4 0.00018 4E-09 52.9 3.6 25 53-77 3-27 (128)
479 TIGR00955 3a01204 The Eye Pigm 97.4 0.00032 7E-09 65.0 6.0 28 50-77 49-76 (617)
480 PRK14250 phosphate ABC transpo 97.4 0.00012 2.6E-09 59.8 2.8 29 50-78 27-55 (241)
481 cd03252 ABCC_Hemolysin The ABC 97.4 0.00013 2.7E-09 59.4 2.9 29 50-78 26-54 (237)
482 TIGR01978 sufC FeS assembly AT 97.4 0.00013 2.7E-09 59.5 2.9 27 50-76 24-50 (243)
483 cd03248 ABCC_TAP TAP, the Tran 97.4 0.00014 3E-09 58.7 3.2 29 50-78 38-66 (226)
484 PRK11264 putative amino-acid A 97.4 0.00012 2.7E-09 59.9 2.9 29 50-78 27-55 (250)
485 PRK13543 cytochrome c biogenes 97.4 0.00012 2.6E-09 58.7 2.8 29 50-78 35-63 (214)
486 PRK09493 glnQ glutamine ABC tr 97.4 0.00012 2.6E-09 59.6 2.8 29 50-78 25-53 (240)
487 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.00012 2.6E-09 60.2 2.8 28 51-78 24-51 (246)
488 TIGR01184 ntrCD nitrate transp 97.4 0.00012 2.6E-09 59.4 2.7 29 50-78 9-37 (230)
489 PRK01184 hypothetical protein; 97.4 0.00013 2.9E-09 56.9 2.9 27 54-81 3-29 (184)
490 PHA02530 pseT polynucleotide k 97.4 0.00013 2.9E-09 61.3 3.1 26 53-78 3-29 (300)
491 PRK08356 hypothetical protein; 97.4 0.00018 4E-09 56.8 3.7 32 53-85 6-37 (195)
492 TIGR01277 thiQ thiamine ABC tr 97.4 0.00012 2.6E-09 58.6 2.7 29 50-78 22-50 (213)
493 PRK13547 hmuV hemin importer A 97.4 0.00012 2.5E-09 61.1 2.7 29 50-78 25-53 (272)
494 COG2274 SunT ABC-type bacterio 97.4 0.00016 3.5E-09 67.7 3.9 31 50-80 497-527 (709)
495 TIGR02324 CP_lyasePhnL phospho 97.4 0.00013 2.7E-09 58.9 2.9 29 50-78 32-60 (224)
496 PRK11300 livG leucine/isoleuci 97.4 0.00011 2.5E-09 60.3 2.6 29 50-78 29-57 (255)
497 PF13521 AAA_28: AAA domain; P 97.4 0.00014 3E-09 55.7 2.9 23 55-78 2-24 (163)
498 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00015 3.2E-09 59.6 3.2 23 55-77 2-24 (249)
499 PRK14262 phosphate ABC transpo 97.4 0.00014 3E-09 59.6 3.1 28 50-77 27-54 (250)
500 PRK14242 phosphate transporter 97.4 0.00016 3.5E-09 59.4 3.4 28 50-77 30-57 (253)
No 1
>KOG0738|consensus
Probab=100.00 E-value=2.2e-46 Score=313.33 Aligned_cols=216 Identities=50% Similarity=0.908 Sum_probs=204.1
Q ss_pred ChhhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--
Q psy15622 1 MKRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-- 78 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-- 78 (217)
+.+.++|+++...|.++|+||.|+.++|+.|.+.|.+|+-.|++|+++.+|++|||++||||||||+||+|+|.+.+.
T Consensus 194 Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTF 273 (491)
T KOG0738|consen 194 LVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTF 273 (491)
T ss_pred HHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeE
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999974443
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 274 FNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~V 353 (491)
T KOG0738|consen 274 FNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVV 353 (491)
T ss_pred EEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeE
Confidence
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAM 158 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~ 158 (217)
.+.|+||.||+||++++|||.++|++|+|+.+.|..+++..+....++++++++.|++.++||||+||.++|++|.+.++
T Consensus 354 mVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~m 433 (491)
T KOG0738|consen 354 MVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAM 433 (491)
T ss_pred EEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 159 RAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
+|.++.....++......+...|++..||+.|+++++|+++.+++.+|++|...||++
T Consensus 434 RR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 434 RRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 9999988888777777677778999999999999999999999999999999999985
No 2
>KOG0730|consensus
Probab=100.00 E-value=1e-40 Score=294.58 Aligned_cols=191 Identities=41% Similarity=0.691 Sum_probs=180.0
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
|....+.|+++|+||+|++++|.+|++.+.||+.+|+.|..++ .||+|||||||||||||++|+++|++.+.
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 4556889999999999999999999999999999999999988 89999999999999999999999985544
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
+++|+||+|+
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 5669999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.||++++| |||+.|++|+||.+.|.+|++.+++++++.+++|+++||+.|+||||+||..+|++|+..|+++.+.
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~--- 658 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE--- 658 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEK 212 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~ 212 (217)
...++++||++|++..+|+++..+++.|+++.++
T Consensus 659 ------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 3469999999999999999999999999998765
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=275.48 Aligned_cols=170 Identities=42% Similarity=0.692 Sum_probs=161.0
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
..+.|+++++|++|+++++++|++.+++|+.+|++|+.++ .||+|||||||||||||+||||+|+..+.
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 5688999999999999999999999999999999999988 99999999999999999999999984433
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
-++++||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 4559999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.|||+++| |||+.|+||+|+...|.+|++.+.+++.+..++|++.||+.++|+||+||.++|.+|.+.|++..
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p 196 (217)
...+|++||.+|.+++..
T Consensus 377 ------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 ------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ------------cCeecHHHHHHHHHHHHh
Confidence 678999999999999864
No 4
>KOG0733|consensus
Probab=100.00 E-value=1.1e-38 Score=279.18 Aligned_cols=210 Identities=32% Similarity=0.528 Sum_probs=186.1
Q ss_pred hhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-----
Q psy15622 5 IKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----- 78 (217)
Q Consensus 5 ~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~----- 78 (217)
-+|.++...|+++|+||+++++++.+|...+.+|.++|..|+.++ .+|.|||||||||||||.||+|+|++.+.
T Consensus 497 akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 497 AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 468899999999999999999999999999999999999999988 77899999999999999999999985544
Q ss_pred ------------------------------------------------------------------------hhccccCC
Q psy15622 79 ------------------------------------------------------------------------VHCGASNF 86 (217)
Q Consensus 79 ------------------------------------------------------------------------~~~~~t~~ 86 (217)
+++|+||+
T Consensus 577 KGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR 656 (802)
T KOG0733|consen 577 KGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR 656 (802)
T ss_pred cCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC
Confidence 56699999
Q ss_pred CCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHh--hCCCCCcccHHHHHHHcc--CCCHHhHHHHHHHHHHHHHHH
Q psy15622 87 PWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILR--QVDLASDLDLELVSDQLE--GYSASDIVVVCRDAAFMAMRA 160 (217)
Q Consensus 87 ~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~--~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~a~~~a~~~ 160 (217)
|+.||++++| ||++.+++++|+.++|..|++.+++ +..++.+++++.||+.+. ||||+|+..+|++|...|+++
T Consensus 657 PDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 657 PDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRE 736 (802)
T ss_pred CcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999 777889999999998765 999999999999999999999
Q ss_pred HHhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy15622 161 AIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~ 215 (217)
.+.+.... ............+|..||++|+++++|++++.|-..|+..++.++.
T Consensus 737 ~~~~~~~~-~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 737 SLFEIDSS-EDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHhhcccc-CcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 87632211 0111111124568999999999999999999999999999998874
No 5
>KOG0736|consensus
Probab=100.00 E-value=2e-37 Score=276.86 Aligned_cols=206 Identities=28% Similarity=0.466 Sum_probs=189.2
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..+.|+++|+|++|++++|..+.+.+..|+.+|++|....++..|||||||||||||.+|+|+|.++..
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 4678999999999999999999999999999999999988887789999999999999999999975544
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
+++|+||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 566999999
Q ss_pred CCCcHHHHh--hccccccccCCC-HHHHHHHHHHHHhhCCCCCcccHHHHHHHc-cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPS-SSGRQELLRLILRQVDLASDLDLELVSDQL-EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~-~~~r~~il~~~l~~~~~~~~~~~~~la~~~-~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
+.||++++| |||+-+++..++ .+.+..+++++.+++.++.++++.++|+.| +.|||+|+-.+|.+|.+.|++|.+.
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999875 466999999999999999999999999999 4899999999999999999999998
Q ss_pred CCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy15622 164 GKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214 (217)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~ 214 (217)
+...+.++..........|+++||.+++++++|+++.+++..|+-++.+|.
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 887776665555566788999999999999999999999999999999986
No 6
>KOG0733|consensus
Probab=100.00 E-value=8.1e-37 Score=267.57 Aligned_cols=203 Identities=32% Similarity=0.500 Sum_probs=178.5
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..++++|.||+|++....+|.+.+.+ +.+|+.|..++ .||+|||||||||||||+||++||+.++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 44578999999999999999999998 99999999888 99999999999999999999999997776
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
++|++||+|+.
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 56699999999
Q ss_pred CcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCC
Q psy15622 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSV 167 (217)
Q Consensus 90 l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~ 167 (217)
||++++| ||++.|.+..|+...|.+|++.+++.+.++.++++.+||..|+||.|+|+.++|.+|+..|++|.++....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~ 421 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSS 421 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999874442
Q ss_pred -ccccc---c-------------c----------------------------ccccCCCccHHHHHHHHHhcC-------
Q psy15622 168 -PQIQA---I-------------P----------------------------MAQLKRPVTKADFEMAIAKCR------- 195 (217)
Q Consensus 168 -~~~~~---~-------------~----------------------------~~~~~~~vt~~df~~al~~~~------- 195 (217)
..... . . +.....-|+++||++|+..++
T Consensus 422 p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREG 501 (802)
T KOG0733|consen 422 PLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREG 501 (802)
T ss_pred ccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccc
Confidence 00000 0 0 000124588999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHhCC
Q psy15622 196 ----KTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 196 ----p~~~~~~i~~~~~~~~~~~~ 215 (217)
|.|+|+||+++++++.++..
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~ 525 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNM 525 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHH
Confidence 57999999999999988754
No 7
>KOG0739|consensus
Probab=100.00 E-value=2.4e-36 Score=246.12 Aligned_cols=212 Identities=40% Similarity=0.714 Sum_probs=184.8
Q ss_pred hhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----
Q psy15622 4 LIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----- 78 (217)
Q Consensus 4 ~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----- 78 (217)
-++-.++.+.|.++|+|+.|++..|+.|.+.+.+|.+.|.+|.+-..|++|+|||||||||||+||+|+|.+.+-
T Consensus 118 ~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 118 ALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred HhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 355678889999999999999999999999999999999999998899999999999999999999999974443
Q ss_pred -------------------------------------------------------------------------hhccccC
Q psy15622 79 -------------------------------------------------------------------------VHCGASN 85 (217)
Q Consensus 79 -------------------------------------------------------------------------~~~~~t~ 85 (217)
.+.++||
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 4449999
Q ss_pred CCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 86 FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 86 ~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
.||.||.+++|||+++|++|+|+...|..+++.++...... .+.|+.+|++.++||||+||..++++|.+..+++..+.
T Consensus 278 iPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 278 IPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred CchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 99999999999999999999999999999999999876544 67899999999999999999999999999999987653
Q ss_pred CCCccccc--c---------------------------cccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy15622 165 KSVPQIQA--I---------------------------PMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 165 ~~~~~~~~--~---------------------------~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~ 215 (217)
..-..... + .+.-.+++||..||..++...+|+++.+|+..++++.+.||.
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 21111000 0 011136889999999999999999999999999999999996
No 8
>KOG0737|consensus
Probab=100.00 E-value=1.1e-34 Score=242.32 Aligned_cols=207 Identities=37% Similarity=0.635 Sum_probs=174.7
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
......-.++|+||+|++.+++.+++.+.+|+.+|++|...+ +|++||||+||||||||++|+++|+..+.
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 344555679999999999999999999999999999997554 89999999999999999999999985544
Q ss_pred ------------------------------------------------------------------------hhccccCC
Q psy15622 79 ------------------------------------------------------------------------VHCGASNF 86 (217)
Q Consensus 79 ------------------------------------------------------------------------~~~~~t~~ 86 (217)
.+.|+||+
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 44599999
Q ss_pred CCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC-
Q psy15622 87 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK- 165 (217)
Q Consensus 87 ~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~- 165 (217)
|.++|.+++||+++++++++|+..+|.+|++.+++...+.+++|++.+|+.++||||+||.++|+.|+..+++..+...
T Consensus 241 P~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~ 320 (386)
T KOG0737|consen 241 PFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSET 320 (386)
T ss_pred CccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -CCccc---ccc------cccccCCCccHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHhC
Q psy15622 166 -SVPQI---QAI------PMAQLKRPVTKADFEMAIAKCRKTVTAAD--IRQFEEWNEKFG 214 (217)
Q Consensus 166 -~~~~~---~~~------~~~~~~~~vt~~df~~al~~~~p~~~~~~--i~~~~~~~~~~~ 214 (217)
..... ... ......++++++||..|...+-+++..+. .....+|.+.|+
T Consensus 321 ~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~ 381 (386)
T KOG0737|consen 321 GLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYG 381 (386)
T ss_pred cchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhc
Confidence 11110 000 00112588999999999998877654443 355677877765
No 9
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4e-34 Score=266.44 Aligned_cols=207 Identities=38% Similarity=0.614 Sum_probs=181.3
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+.+.|.++|+|++|++++++.|.+.+.+|+.++..+...+ .+++++|||||||||||++|+++|+.++.
T Consensus 443 ~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~ 522 (733)
T TIGR01243 443 VLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPE 522 (733)
T ss_pred hhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 44567899999999999999999999999999999999877 77899999999999999999999975443
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
++++|||+++.
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDI 602 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhh
Confidence 46699999999
Q ss_pred CcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCC
Q psy15622 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSV 167 (217)
Q Consensus 90 l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~ 167 (217)
+|++++| ||+..+++|+|+.++|.+||+.++++..+..+++++.+|+.++||||+||.++|++|...|+++.+.....
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~ 682 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK 682 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999998 99999999999999999999999999998889999999999999999999999999999999987653321
Q ss_pred cccccc-cccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy15622 168 PQIQAI-PMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 168 ~~~~~~-~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~ 215 (217)
...... .+......++.+||..|+++++|+++.+++..|++|.++|+.
T Consensus 683 ~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 683 EKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 111110 111224579999999999999999999999999999999985
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4e-32 Score=235.86 Aligned_cols=174 Identities=37% Similarity=0.556 Sum_probs=158.9
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
.-...+.|+++|+||+|++.+++++++.+.+|+.+|..|...+ .+|+++||+||||||||++|+++|+.++.
T Consensus 133 ~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 133 LLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred hhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 3345678999999999999999999999999999999999877 77899999999999999999999974432
Q ss_pred -------------------------------------------------------------------------hhccccC
Q psy15622 79 -------------------------------------------------------------------------VHCGASN 85 (217)
Q Consensus 79 -------------------------------------------------------------------------~~~~~t~ 85 (217)
.++++||
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN 292 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 292 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 2568999
Q ss_pred CCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 86 FPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 86 ~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
+++.+|++++| ||+..|+|+.|+.++|..|++.++.+.++..++++..+++.++||||+||.++|.+|.+.|+++.
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~-- 370 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN-- 370 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCcccccccccccCCCccHHHHHHHHHhcCCC
Q psy15622 164 GKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKT 197 (217)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~ 197 (217)
...++.+||.+|++++...
T Consensus 371 ---------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ---------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------------CCccCHHHHHHHHHHHHhc
Confidence 4579999999999998653
No 11
>KOG0740|consensus
Probab=99.97 E-value=6e-32 Score=232.43 Aligned_cols=210 Identities=40% Similarity=0.677 Sum_probs=184.2
Q ss_pred hhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----
Q psy15622 3 RLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---- 78 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---- 78 (217)
+.+.+.+....+++.|+|+.|++++++.+.+.+.||...+.+|.++..|.+++||.||||+|||+|++|+|.+.+.
T Consensus 137 ~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 137 EGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred HHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 4566777788899999999999999999999999999999999999999999999999999999999999974433
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
++++|
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 56699
Q ss_pred cCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHH
Q psy15622 84 SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAI 162 (217)
Q Consensus 84 t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~ 162 (217)
||.||.+|++++|||.+++++|+|+.+.|..+|..++...+.. .+.+++.+++.++|||++||..+|.+|++...+...
T Consensus 297 TN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 297 TNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELG 376 (428)
T ss_pred CCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcc
Confidence 9999999999999999999999999999999999999887433 567899999999999999999999999987776653
Q ss_pred hCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 163 RGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
.. .....-.....++++..||..|++.++|+++......|.+|.+.||.+
T Consensus 377 ~~----~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 377 GT----TDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred cc----hhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 32 011111234468899999999999999999999999999999999974
No 12
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=7.8e-31 Score=232.42 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=159.7
Q ss_pred hhhhhccccc--CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-
Q psy15622 3 RLIKRDIIVE--RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ- 78 (217)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~- 78 (217)
+++++....+ .++.+|+||+|++.+|+.+.+....+. ......+ .+++|+||+||||||||++|+++|+.++.
T Consensus 210 q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 210 QIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4555555444 367899999999999999987654321 1222223 57799999999999999999999986654
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
++++|
T Consensus 287 ~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 287 LLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred EEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 45699
Q ss_pred cCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCC--CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHH
Q psy15622 84 SNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA--SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMR 159 (217)
Q Consensus 84 t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~--~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~ 159 (217)
||+++.+|++++| ||+..++++.|+.++|.+|++.++.+.... .+.+++.+++.++||||+||+++|.+|...|+.
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999999999999999999999987543 478899999999999999999999999988875
Q ss_pred HHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHh
Q psy15622 160 AAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKT--VTAADIRQFEEWNEKF 213 (217)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~--~~~~~i~~~~~~~~~~ 213 (217)
+ ..++|.+||..|++++.|. ...++|+.+++|...-
T Consensus 447 ~------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 447 E------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred c------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 4 3569999999999999996 5888999999999764
No 13
>KOG0652|consensus
Probab=99.97 E-value=2.4e-31 Score=213.74 Aligned_cols=169 Identities=33% Similarity=0.571 Sum_probs=157.4
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHH-----Hhch-----
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAI-----VYNQ----- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~-----~~~~----- 78 (217)
+.+.|+..++|++|++.++++|.+.+.+|+.++..|..++ +||+|+|+|||||||||.+||+.|. |+..
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 4678999999999999999999999999999999999988 9999999999999999999999985 2211
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
-++++||+.+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 4559999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
-+||+++| |+++.|+||.|+.+.|.+|++.+-+++...+++++++||+.+++|+|++..++|.+|.+.|+++.
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...++.+||.+++..++
T Consensus 397 ------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ------------cccccHHHHHHHHHHHH
Confidence 56799999999998775
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1e-30 Score=227.35 Aligned_cols=178 Identities=40% Similarity=0.614 Sum_probs=160.6
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
+..+.+.|++.|+||+|++++++.+.+.+.+|+.++..|...+ .+++++||+||||||||++|+++|+.++.
T Consensus 119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 119 AMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred eeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 3445677899999999999999999999999999999999877 77899999999999999999999974432
Q ss_pred -------------------------------------------------------------------------hhccccC
Q psy15622 79 -------------------------------------------------------------------------VHCGASN 85 (217)
Q Consensus 79 -------------------------------------------------------------------------~~~~~t~ 85 (217)
.+++|||
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn 278 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 278 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC
Confidence 3568999
Q ss_pred CCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 86 FPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 86 ~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
.++.+|++++| ||+..++||.|+.++|.+|++.+++...+..++++..++..++||+|+|+..+|++|.+.|+++.
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~-- 356 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD-- 356 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 99999999999999999999999999988888999999999999999999999999999998864
Q ss_pred CCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHH
Q psy15622 164 GKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAA 201 (217)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~ 201 (217)
...|+.+||.+|++.++++...+
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 45699999999999999765443
No 15
>KOG0726|consensus
Probab=99.97 E-value=3.8e-31 Score=215.21 Aligned_cols=169 Identities=33% Similarity=0.554 Sum_probs=156.8
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHH-----Hhch-----
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAI-----VYNQ----- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~-----~~~~----- 78 (217)
..+.|..++.|++|++.+++++.+.+++|+.+|++|+..+ +||+||+|||+||||||.||+|+|+ |+..
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 4577899999999999999999999999999999999877 9999999999999999999999986 2222
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
-++.+||+.+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 4559999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+||++.| |+++.|.||.||...+..|+..+..++.+..+++++.+....+.+||+||.++|-+|.+.|++..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer----- 410 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER----- 410 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...+|.+||.+|.+++.
T Consensus 411 ------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 ------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred ------------HhhccHHHHHHHHHHHH
Confidence 56699999999998874
No 16
>KOG0734|consensus
Probab=99.97 E-value=7.9e-31 Score=227.22 Aligned_cols=164 Identities=37% Similarity=0.592 Sum_probs=150.2
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
..++|+|+.|.++.|++|.+.+.+ ++.|..|..++ +-|+||||+||||||||+||||+|++.+.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 468899999999999999999988 77788777766 88899999999999999999999986555
Q ss_pred ---------------------------------------------------------------hhccccCCCCCCcHHHH
Q psy15622 79 ---------------------------------------------------------------VHCGASNFPWNIDDAFL 95 (217)
Q Consensus 79 ---------------------------------------------------------------~~~~~t~~~~~l~~~l~ 95 (217)
+++++||.|+.||+++.
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 66699999999999999
Q ss_pred h--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccc
Q psy15622 96 R--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAI 173 (217)
Q Consensus 96 ~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 173 (217)
| |||+.+.+|.||...|.+|+..++.++.++.++|+.-||+-+.||+|+|+.++++.|+..|....
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg------------ 525 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG------------ 525 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC------------
Confidence 9 99999999999999999999999999999999999999999999999999999999998887654
Q ss_pred cccccCCCccHHHHHHHHHhcC
Q psy15622 174 PMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 174 ~~~~~~~~vt~~df~~al~~~~ 195 (217)
...||+.|++-|-+++.
T Consensus 526 -----a~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 526 -----AEMVTMKHLEFAKDRIL 542 (752)
T ss_pred -----cccccHHHHhhhhhhee
Confidence 55699999999887764
No 17
>KOG0727|consensus
Probab=99.97 E-value=5.2e-30 Score=205.27 Aligned_cols=169 Identities=37% Similarity=0.563 Sum_probs=156.0
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
..+.|++++.|++|++-+|+++++.+++|+.+..+|++++ .||+|+|+|||||||||+|++++|+....
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 3577999999999999999999999999999999999988 89999999999999999999999962211
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
-++.+||+.+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 3558999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+||+++| |+++.|+||+|+..+++-++..+..++.+.+++|++.+..+.+..|++||..+|++|.+.|++..
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n----- 380 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN----- 380 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
.-.+...||++|.+...
T Consensus 381 ------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ------------ceeeeHHHHHHHHHhhc
Confidence 55689999999988764
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-29 Score=227.48 Aligned_cols=180 Identities=44% Similarity=0.716 Sum_probs=164.3
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch--------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~-------- 78 (217)
......+.++|+|++|++++++.+.+.+.+|+.++..|...+ ++++++|||||||||||++|+++|..++.
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 456688999999999999999999999999999999988744 67789999999999999999999985554
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
.++++||+|+.
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 45699999999
Q ss_pred CcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCC--CCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDL--ASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 90 l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~--~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+|++++| ||+..+++|+|+..+|.++++.++..... ..++++..+++.++||||+||..+|++|.+.++++..
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--- 467 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--- 467 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc---
Confidence 9999999 99999999999999999999999996554 5789999999999999999999999999999998863
Q ss_pred CCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15622 166 SVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEW 209 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~ 209 (217)
..++|.+||..|++..+|+++ |++|
T Consensus 468 -------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 -------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred -------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 356999999999999999988 8887
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=222.29 Aligned_cols=169 Identities=35% Similarity=0.537 Sum_probs=155.8
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+.+.|..+|+||+|++++++.+.+.+.+|+.+|.+|...+ .+++++||+||||||||++|+++|+.++.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 5577889999999999999999999999999999999877 78899999999999999999999974432
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.++++||+++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 2558999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+|++++| ||+..|+|+.|+.++|.+|++.++.++.+..++++..++..++||||+||.++|.+|...|+++.
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----- 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----- 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999998 99999999999999999999999999998889999999999999999999999999999999875
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...||.+||..|++++.
T Consensus 409 ------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ------------CCccCHHHHHHHHHHHH
Confidence 45699999999999974
No 20
>KOG0731|consensus
Probab=99.97 E-value=6.2e-30 Score=231.87 Aligned_cols=166 Identities=38% Similarity=0.595 Sum_probs=153.2
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
....++|+|+.|.++++++|+++|.+ +++|..|+..+ +.|+|+||+||||||||.||+|+|++.+.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34559999999999999999999987 88888888877 89999999999999999999999986665
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
+++++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 45599999999
Q ss_pred CcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 90 l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
+|++++| ||++.++++.|+...|.+|++.+++...+. .++++..+|..++||+|+||.++|.+|+..|+++.
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~----- 537 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG----- 537 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-----
Confidence 9999999 999999999999999999999999999985 78899999999999999999999999999999987
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...|+..||..|++.+.
T Consensus 538 ------------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 538 ------------LREIGTKDLEYAIERVI 554 (774)
T ss_pred ------------cCccchhhHHHHHHHHh
Confidence 56799999999999654
No 21
>KOG0728|consensus
Probab=99.96 E-value=3.2e-29 Score=200.52 Aligned_cols=176 Identities=33% Similarity=0.546 Sum_probs=161.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+.+.|+..++-++|++.+++++.+-+.+|..+|++|+.++ ..|+|+|||||||+|||.+|++.|....+
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 45688999999999999999999999999999999999988 56699999999999999999999974443
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
-++.+||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 344899999
Q ss_pred CCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+-+|++++| |+++.|+||+|+.+.|.+|++.+-+++++...+++..+|+...|.||+++..+|-+|.+.|++..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer---- 372 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER---- 372 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccccccccccCCCccHHHHHHHHHhcCCCCCHH
Q psy15622 166 SVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAA 201 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~ 201 (217)
...+|++||+-|+.++....+..
T Consensus 373 -------------rvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 373 -------------RVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred -------------hccccHHHHHHHHHHHHhccccc
Confidence 67899999999999886544433
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=5.6e-29 Score=199.75 Aligned_cols=166 Identities=34% Similarity=0.444 Sum_probs=146.8
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
..++++++|++|+++.|...+-++.+ +.+|+.|..+. |+.||||||||||||++|+++|+....
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 45789999999999999999887776 88888888776 699999999999999999999985544
Q ss_pred -----------------------------------------------------------------hhccccCCCCCCcHH
Q psy15622 79 -----------------------------------------------------------------VHCGASNFPWNIDDA 93 (217)
Q Consensus 79 -----------------------------------------------------------------~~~~~t~~~~~l~~~ 93 (217)
..+++||+|+.||++
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 445999999999999
Q ss_pred HHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHH-HHHHHHHHHHHHHHHhCCCCccccc
Q psy15622 94 FLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIV-VVCRDAAFMAMRAAIRGKSVPQIQA 172 (217)
Q Consensus 94 l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~-~l~~~a~~~a~~~~~~~~~~~~~~~ 172 (217)
+++||...|+|.+|+.++|..|++.+.+.+++.-+.++..++..+.|+||+||. .+...|...|+...
T Consensus 271 iRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed----------- 339 (368)
T COG1223 271 IRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED----------- 339 (368)
T ss_pred HHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------
Confidence 999999999999999999999999999999998888999999999999999995 66677777777665
Q ss_pred ccccccCCCccHHHHHHHHHhcCCC
Q psy15622 173 IPMAQLKRPVTKADFEMAIAKCRKT 197 (217)
Q Consensus 173 ~~~~~~~~~vt~~df~~al~~~~p~ 197 (217)
.-.|+.+||+.|+++.++.
T Consensus 340 ------~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 340 ------REKVEREDIEKALKKERKR 358 (368)
T ss_pred ------hhhhhHHHHHHHHHhhccc
Confidence 4458999999999986653
No 23
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.8e-28 Score=212.00 Aligned_cols=169 Identities=43% Similarity=0.670 Sum_probs=153.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+.+.|++.|+|++|++++++.+.+.+.+|+.++..+...+ .++++++|+||||||||++|+++|+.++.
T Consensus 112 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~ 191 (364)
T TIGR01242 112 EVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 191 (364)
T ss_pred eeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH
Confidence 45578999999999999999999999999999999998877 77899999999999999999999873332
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
.+++|||.+
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~ 271 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRP 271 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 255899999
Q ss_pred CCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+.+|+++++ ||++.++++.|+.++|.+|++.++....+..++++..+++.++||+|+|+.++|.+|...|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999998888888899999999999999999999999999998874
Q ss_pred CCcccccccccccCCCccHHHHHHHHHhc
Q psy15622 166 SVPQIQAIPMAQLKRPVTKADFEMAIAKC 194 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~vt~~df~~al~~~ 194 (217)
...|+.+||.+|++.+
T Consensus 348 -------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------CCccCHHHHHHHHHHh
Confidence 4569999999999875
No 24
>KOG0729|consensus
Probab=99.96 E-value=4.2e-29 Score=201.38 Aligned_cols=169 Identities=35% Similarity=0.573 Sum_probs=156.0
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+.+.|+++++|++|..++++.|++-++.|+.+|+-|..++ .||+|+|+|||||||||.+||++|+..+.
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4678999999999999999999999999999999999888 89999999999999999999999973322
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
-+..+||+|+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 2338999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+|++++| |+++.++|.+|+.+.|..|++.+.+.+....++-++.||+.|++-+|++|..+|.+|.+.|++..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999999889999999999999999999999999999999876
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
....|..||..|+.++.
T Consensus 403 ------------rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 403 ------------RKVATEKDFLDAVNKVV 419 (435)
T ss_pred ------------hhhhhHHHHHHHHHHHH
Confidence 56689999999998875
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=1.5e-27 Score=213.71 Aligned_cols=167 Identities=41% Similarity=0.600 Sum_probs=148.4
Q ss_pred ccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
.+.|.++|+|++|++++++++.+.+.+ +.++..+...+ .+++++||+||||||||++++++|+..+.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 456789999999999999999998887 67777777654 67799999999999999999999974432
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
+++++||+++.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 36689999999
Q ss_pred CcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCC
Q psy15622 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSV 167 (217)
Q Consensus 90 l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~ 167 (217)
+|++++| ||++.++++.|+.++|.+|++.++....+..+.++..+++.+.|||++||.++|++|...+.++.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------ 279 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------ 279 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 99999999999999999999999998887788899999999999999999999999988877653
Q ss_pred cccccccccccCCCccHHHHHHHHHhcC
Q psy15622 168 PQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 168 ~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
..+++.+||..|++.+.
T Consensus 280 -----------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 -----------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred -----------CCCCCHHHHHHHHHHHh
Confidence 45799999999999875
No 26
>KOG0735|consensus
Probab=99.95 E-value=2.3e-27 Score=211.18 Aligned_cols=192 Identities=30% Similarity=0.509 Sum_probs=159.0
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
....|+|++|+.++++.|++.+.||.++|.+|.... +-..|||||||||||||.||.++|..++.
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 349999999999999999999999999999999887 66689999999999999999999975544
Q ss_pred ---------------------------------------------------------------hhccccCCCCCCcHHHH
Q psy15622 79 ---------------------------------------------------------------VHCGASNFPWNIDDAFL 95 (217)
Q Consensus 79 ---------------------------------------------------------------~~~~~t~~~~~l~~~l~ 95 (217)
+++|+|.+|+.||++++
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 45599999999999999
Q ss_pred h--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccc
Q psy15622 96 R--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAI 173 (217)
Q Consensus 96 ~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 173 (217)
| |+|+.++.|.|+..+|.+|++.+-.....+.++|++.+|..++||||+|++.++-+|.+.|+++.+.......
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~~~---- 897 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDEEG---- 897 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCccc----
Confidence 9 9999999999999999999999999898899999999999999999999999999999999999865333211
Q ss_pred cccccCCCccHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHh
Q psy15622 174 PMAQLKRPVTKADFEMAIA--KCRKTVTAADIRQFEEWNEKF 213 (217)
Q Consensus 174 ~~~~~~~~vt~~df~~al~--~~~p~~~~~~i~~~~~~~~~~ 213 (217)
....++..-+..... .-+|+.+.-+-....+...+|
T Consensus 898 ----~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~ 935 (952)
T KOG0735|consen 898 ----VVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQF 935 (952)
T ss_pred ----cCCccchhhhhhhhhccCCCccccccchhhhhhHHHhh
Confidence 112233333333332 445666666666666555554
No 27
>KOG0730|consensus
Probab=99.95 E-value=4.1e-27 Score=208.63 Aligned_cols=180 Identities=36% Similarity=0.633 Sum_probs=163.9
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
+.++ ++++|...+...+++.+.+|+.++..+..++ ++|+++|+|||||||||.+++++|+..+.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999999999999999888 88899999999999999999999986663
Q ss_pred ---------------------------------------------------------------hhccccCCCCCCcHHHH
Q psy15622 79 ---------------------------------------------------------------VHCGASNFPWNIDDAFL 95 (217)
Q Consensus 79 ---------------------------------------------------------------~~~~~t~~~~~l~~~l~ 95 (217)
+++++||+|+.||++++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 45699999999999999
Q ss_pred h-hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccccc
Q psy15622 96 R-RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIP 174 (217)
Q Consensus 96 ~-rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 174 (217)
| ||++.+.+..|+..+|.+|++.+.+++++.+++++..+|..++||+|+|+..+|.+|...+.++
T Consensus 339 RgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-------------- 404 (693)
T KOG0730|consen 339 RGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-------------- 404 (693)
T ss_pred cCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------
Confidence 9 9999999999999999999999999999988899999999999999999999999999999887
Q ss_pred ccccCCCccHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHHhCCC
Q psy15622 175 MAQLKRPVTKADFEMAIAKCR-----------KTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 175 ~~~~~~~vt~~df~~al~~~~-----------p~~~~~~i~~~~~~~~~~~~~ 216 (217)
+.++|..|+..++ |+++|+||+++++.+.+.+.+
T Consensus 405 --------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~ 449 (693)
T KOG0730|consen 405 --------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQA 449 (693)
T ss_pred --------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHH
Confidence 3466777766665 689999999999999887654
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.8e-27 Score=208.27 Aligned_cols=165 Identities=39% Similarity=0.576 Sum_probs=151.7
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
...+.|.|+.|.++.++++.+.+.+ +..|..|...+ +.|+|++|+||||||||+||+++|++.+.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4679999999999999999999987 66676666655 88899999999999999999999986555
Q ss_pred -------------------------------------------------------------------hhccccCCCCCCc
Q psy15622 79 -------------------------------------------------------------------VHCGASNFPWNID 91 (217)
Q Consensus 79 -------------------------------------------------------------------~~~~~t~~~~~l~ 91 (217)
+++++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 4448999999999
Q ss_pred HHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcc
Q psy15622 92 DAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQ 169 (217)
Q Consensus 92 ~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~ 169 (217)
++++| ||++.+.++.||...|++|++.+++...+..++++..+|+.++||+|+|+.+++++|++.|+++.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccCCCccHHHHHHHHHhcC
Q psy15622 170 IQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 170 ~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...++..||..|++++.
T Consensus 375 ---------~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 375 ---------KKEITMRDIEEAIDRVI 391 (596)
T ss_pred ---------CeeEeccchHHHHHHHh
Confidence 67799999999999885
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=8.2e-26 Score=210.78 Aligned_cols=201 Identities=35% Similarity=0.580 Sum_probs=168.0
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..++++|+||+|++.+++.+++.+.+|+.+|.+++..+ .++++++|+||||||||++++++|+.++.
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 35789999999999999999999999999999999877 77899999999999999999999985543
Q ss_pred -----------------------------------------------------------------hhccccCCCCCCcHH
Q psy15622 79 -----------------------------------------------------------------VHCGASNFPWNIDDA 93 (217)
Q Consensus 79 -----------------------------------------------------------------~~~~~t~~~~~l~~~ 93 (217)
.++++||.++.+|++
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~a 330 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPA 330 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHH
Confidence 344899999999999
Q ss_pred HHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc-cc
Q psy15622 94 FLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP-QI 170 (217)
Q Consensus 94 l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~-~~ 170 (217)
+.+ ||+..+.++.|+.++|.+|++.+.....+..+.+++.+++.++||+++|+..+++.|...++++.+...... ..
T Consensus 331 l~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~ 410 (733)
T TIGR01243 331 LRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEA 410 (733)
T ss_pred HhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 998 999999999999999999999999888888888999999999999999999999999999999876522111 00
Q ss_pred cccc-ccccCCCccHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHH
Q psy15622 171 QAIP-MAQLKRPVTKADFEMAIAKCRK-----------TVTAADIRQFEEWNEK 212 (217)
Q Consensus 171 ~~~~-~~~~~~~vt~~df~~al~~~~p-----------~~~~~~i~~~~~~~~~ 212 (217)
...+ .......++.+||..|++.+.| .++|+|+.++++.++.
T Consensus 411 ~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~ 464 (733)
T TIGR01243 411 EEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQE 464 (733)
T ss_pred ccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHH
Confidence 0111 1112456899999999998875 4578888776666554
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=2e-25 Score=203.47 Aligned_cols=165 Identities=36% Similarity=0.573 Sum_probs=146.5
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..+.++|+|++|.+++++.+.+.+.+ +..+..|...+ .+++++||+||||||||++|+++|+..+.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34568999999999999999998876 66777777655 66799999999999999999999984432
Q ss_pred --------------------------------------------------------------------hhccccCCCCCC
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPWNI 90 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~~l 90 (217)
.++++||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 355899999999
Q ss_pred cHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc
Q psy15622 91 DDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP 168 (217)
Q Consensus 91 ~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~ 168 (217)
|++++| ||++.+.++.|+.++|.+|++.+++...+.++.++..+|+.++|||++||.+++++|+..+.++.
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------- 407 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------- 407 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 999998 99999999999999999999999998887888899999999999999999999999998887664
Q ss_pred ccccccccccCCCccHHHHHHHHHhc
Q psy15622 169 QIQAIPMAQLKRPVTKADFEMAIAKC 194 (217)
Q Consensus 169 ~~~~~~~~~~~~~vt~~df~~al~~~ 194 (217)
...+|.+||..|++++
T Consensus 408 ----------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ----------KATITMKEIDTAIDRV 423 (638)
T ss_pred ----------CCCcCHHHHHHHHHHH
Confidence 4569999999999987
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=3.1e-25 Score=196.88 Aligned_cols=178 Identities=29% Similarity=0.409 Sum_probs=146.0
Q ss_pred hhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-----
Q psy15622 5 IKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----- 78 (217)
Q Consensus 5 ~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~----- 78 (217)
+..-...+.|+++|+||+|++.+++.+++.+.+|+.++..|...+ .|++++|||||||||||++++++|+.++.
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 334456788999999999999999999999999999999999866 77899999999999999999999985420
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence
Q ss_pred -------hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhh-CCCC---------CcccHHHHHHH--
Q psy15622 79 -------VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQ-VDLA---------SDLDLELVSDQ-- 137 (217)
Q Consensus 79 -------~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~-~~~~---------~~~~~~~la~~-- 137 (217)
+++++||+++.||++++| ||+.+|+|+.|+.++|.+|++.++.. +.+. ...++..+++.
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 355899999999999999 99999999999999999999999864 2331 11122222222
Q ss_pred ---------------------------ccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHH
Q psy15622 138 ---------------------------LEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMA 190 (217)
Q Consensus 138 ---------------------------~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~a 190 (217)
.+.+||++|.++|..|...|+++.+.+. ...++.+|+..|
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-------------~~~~~~~~l~~a 474 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-------------QVGLRIEHLLAA 474 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-------------CcCcCHHHHHHH
Confidence 4568999999999999999999987432 346999999999
Q ss_pred HHhcC
Q psy15622 191 IAKCR 195 (217)
Q Consensus 191 l~~~~ 195 (217)
+...-
T Consensus 475 ~~~e~ 479 (512)
T TIGR03689 475 VLDEF 479 (512)
T ss_pred HHHhh
Confidence 98753
No 32
>KOG0741|consensus
Probab=99.93 E-value=1.2e-25 Score=194.97 Aligned_cols=196 Identities=26% Similarity=0.457 Sum_probs=160.6
Q ss_pred cccCCCCCCCc--ccchHHHHHHHHHH-HHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 10 IVERPDVQWSD--IANQVKAKKLLQEA-VILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 10 ~~~~~~~~~~d--l~g~~~~~~~l~~~-~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
.+..|+.+|++ |+|++.--..+.+- ...-.-.|.+.+.++ ..-+|+|||||||||||.+||.|+..++.
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN 289 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN 289 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC
Confidence 34568888887 67888776665444 333333467777777 66699999999999999999999987765
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 290 GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 290 GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhc
Confidence
Q ss_pred -hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCC----CCCcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 79 -VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVD----LASDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 79 -~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~----~~~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
.+++.||+.+.||++++| ||...+++.+||+..|.+|++.+.+++. ++.++|+.+||..+.+|||++|+-+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 566999999999999999 9999999999999999999999887763 568999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCC--CCHHHHHHHH
Q psy15622 152 DAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKT--VTAADIRQFE 207 (217)
Q Consensus 152 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~--~~~~~i~~~~ 207 (217)
.|...|+.|.+...-. ....+.......||.+||..||++++|+ ++.+|+..+.
T Consensus 450 sA~S~A~nR~vk~~~~--~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK--VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHHHhhhccCcc--eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999998764411 2223344456789999999999999996 4777776664
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=7.9e-24 Score=194.41 Aligned_cols=166 Identities=39% Similarity=0.573 Sum_probs=145.5
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
.....|+|+.|.+..++.+.+.+.++ ..+..+...+ ..+++++|+||||||||++++++++.++.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 44678999999999999999999874 4455555443 56689999999999999999999985443
Q ss_pred -------------------------------------------------------------------hhccccCCCCCCc
Q psy15622 79 -------------------------------------------------------------------VHCGASNFPWNID 91 (217)
Q Consensus 79 -------------------------------------------------------------------~~~~~t~~~~~l~ 91 (217)
+++++||+++.+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 4558999999999
Q ss_pred HHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcc
Q psy15622 92 DAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQ 169 (217)
Q Consensus 92 ~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~ 169 (217)
++++| ||++.+.++.|+.++|.+|++.++++..+..++++..+++.+.||||+||.++|++|+..|+++.
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-------- 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 376 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 99998 99999999999999999999999999998888999999999999999999999999999988764
Q ss_pred cccccccccCCCccHHHHHHHHHhcCC
Q psy15622 170 IQAIPMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 170 ~~~~~~~~~~~~vt~~df~~al~~~~p 196 (217)
...++.+||..|++.+.+
T Consensus 377 ---------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ---------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---------CCcccHHHHHHHHHHHhc
Confidence 456999999999987754
No 34
>KOG0732|consensus
Probab=99.91 E-value=4e-24 Score=198.90 Aligned_cols=187 Identities=29% Similarity=0.503 Sum_probs=153.8
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
...++|++++|++.++..|.+.|.+|+.+|+.|..+. .||+|+||+||||||||++|+++|.....
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4578999999999999999999999999999999888 88999999999999999999999963222
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
++|++||+++.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda 418 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA 418 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccc
Confidence 66799999999
Q ss_pred CcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 90 IDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 90 l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
+|++++| ||++.++||+|+.+.|.+|+.....+-... ...-++.+|+.+.||.|+|++.+|.+|++.++++......
T Consensus 419 ~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y 498 (1080)
T KOG0732|consen 419 IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIY 498 (1080)
T ss_pred cchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeee
Confidence 9999999 999999999999999999999887654422 2334678999999999999999999999999988754221
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCCCCCH
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTA 200 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~ 200 (217)
.....-. .+.....|...||..|+.+..|+...
T Consensus 499 ~s~~kl~-~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 499 SSSDKLL-IDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred ccccccc-ccchhhhhhhHhhhhhhhccCCCCCc
Confidence 1110000 11123348999999999999876554
No 35
>KOG0651|consensus
Probab=99.89 E-value=4e-24 Score=175.38 Aligned_cols=167 Identities=31% Similarity=0.591 Sum_probs=151.2
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
....++|+.++|..+++.++++-+..|+..|.+|...+ +||.+++||||||+|||.+|+++|.-++.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34567999999999999999999999999999999977 89999999999999999999999975554
Q ss_pred --------------------------------------------------------------------hhccccCCCCCC
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPWNI 90 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~~l 90 (217)
.+++|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 455999999999
Q ss_pred cHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc
Q psy15622 91 DDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP 168 (217)
Q Consensus 91 ~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~ 168 (217)
+++++| |+++.+++|+|+...|..|++..-+.+....+++.+.+.++.+||.|+|+.++|.+|-..+++..
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999988888888888999999999999999999999999998887764
Q ss_pred ccccccccccCCCccHHHHHHHHHhcC
Q psy15622 169 QIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 169 ~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...+-.+||..++++..
T Consensus 358 ----------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 ----------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred ----------hHHHhHHHHHHHHHHHH
Confidence 34577899999988863
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.86 E-value=1.9e-21 Score=188.40 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=87.4
Q ss_pred hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHh--hCCCCC-cccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILR--QVDLAS-DLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~--~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+++||||+|+.||||++| ||++.|.++.|+..+|++++..++. .+.+.. .++++.+|+.|+||||+|+.++|.+|
T Consensus 1774 IVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1774 LVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHH
Confidence 455999999999999999 9999999999999999999887643 344443 36899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 154 AFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
+..|+++. ...|+.+||+.|+.+..
T Consensus 1854 aliAirq~-----------------ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1854 LSISITQK-----------------KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHcC-----------------CCccCHHHHHHHHHHHH
Confidence 99999886 56799999999999765
No 37
>KOG0736|consensus
Probab=99.82 E-value=8.7e-20 Score=164.38 Aligned_cols=164 Identities=22% Similarity=0.317 Sum_probs=139.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch------------------------------------------------------
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ------------------------------------------------------ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~------------------------------------------------------ 78 (217)
..+||+|+||||||+++++.|.+++.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged 511 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGED 511 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchh
Confidence 35999999999999999999997776
Q ss_pred -----------------------hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHH
Q psy15622 79 -----------------------VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVS 135 (217)
Q Consensus 79 -----------------------~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la 135 (217)
++++++++.+.+++.+++-|.+.|.++.|+.++|.++++.++....++.++....++
T Consensus 512 ~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a 591 (953)
T KOG0736|consen 512 ARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLA 591 (953)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 566999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccccc---ccccCCCccHHHHHHHHHhcC------------CCCCH
Q psy15622 136 DQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIP---MAQLKRPVTKADFEMAIAKCR------------KTVTA 200 (217)
Q Consensus 136 ~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~---~~~~~~~vt~~df~~al~~~~------------p~~~~ 200 (217)
..+.|||.+|+..++......+..+..+.......+..+ .......++.+||.+|+.+++ |+|+|
T Consensus 592 ~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~W 671 (953)
T KOG0736|consen 592 RKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSW 671 (953)
T ss_pred HhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccch
Confidence 999999999999999888666666655444222222222 223357899999999999776 89999
Q ss_pred HHHHHHHHHHHHhCCC
Q psy15622 201 ADIRQFEEWNEKFGSS 216 (217)
Q Consensus 201 ~~i~~~~~~~~~~~~~ 216 (217)
+||+++++.+....++
T Consensus 672 dDVGGLeevK~eIldT 687 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDT 687 (953)
T ss_pred hcccCHHHHHHHHHHH
Confidence 9999999999876554
No 38
>KOG0743|consensus
Probab=99.73 E-value=2e-17 Score=142.41 Aligned_cols=132 Identities=20% Similarity=0.341 Sum_probs=113.8
Q ss_pred CCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCC-ceEEEecCCCCcHHHHHHHHHHHhch----------------
Q psy15622 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPW-KGVLMVGPPGTGKTMLAKAVAIVYNQ---------------- 78 (217)
Q Consensus 16 ~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~vll~Gp~G~GKTtla~aia~~~~~---------------- 78 (217)
.+|+.|+-..+.|+.|.+.+.-+...+.+|+..++|+ +|.|||||||||||+++-|||++++.
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dL 277 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDL 277 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHH
Confidence 8899999999999999999999999999999999887 68999999999999999999998876
Q ss_pred --------------------------------------------------------------hhccccCCCCCCcHHHHh
Q psy15622 79 --------------------------------------------------------------VHCGASNFPWNIDDAFLR 96 (217)
Q Consensus 79 --------------------------------------------------------------~~~~~t~~~~~l~~~l~~ 96 (217)
+++.|||+.+.||||++|
T Consensus 278 r~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlR 357 (457)
T KOG0743|consen 278 RHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLR 357 (457)
T ss_pred HHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcC
Confidence 566999999999999999
Q ss_pred --hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcc--CCCHHhHHHH
Q psy15622 97 --RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE--GYSASDIVVV 149 (217)
Q Consensus 97 --rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~--g~s~~di~~l 149 (217)
|.|.+|+++..+......++..++..-. +..-+.++.+..+ ..|++|++..
T Consensus 358 pGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 358 PGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999999999996532 1223444554443 3699999643
No 39
>KOG0742|consensus
Probab=99.70 E-value=2.1e-16 Score=134.52 Aligned_cols=138 Identities=26% Similarity=0.398 Sum_probs=107.8
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
.++-.+++++....+...|+.+...--+. +. -..|.+.|+||||||||||+.|+-||..-+.
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNT-K~---h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANT-KK---HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhccc-cc---ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 34556899999999999998877542221 11 1245688999999999999999999974433
Q ss_pred --------------------------------------------------------------hhccccCCCCCCcHHHHh
Q psy15622 79 --------------------------------------------------------------VHCGASNFPWNIDDAFLR 96 (217)
Q Consensus 79 --------------------------------------------------------------~~~~~t~~~~~l~~~l~~ 96 (217)
+++.+||+|..+|.++-.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh
Confidence 445899999999999999
Q ss_pred hccccccccCCCHHHHHHHHHHHHhhCCCC---------------------------CcccHHHHHHHccCCCHHhHHHH
Q psy15622 97 RLEKRIYVPLPSSSGRQELLRLILRQVDLA---------------------------SDLDLELVSDQLEGYSASDIVVV 149 (217)
Q Consensus 97 rf~~~i~~~~p~~~~r~~il~~~l~~~~~~---------------------------~~~~~~~la~~~~g~s~~di~~l 149 (217)
|++.+++||+|..++|.+++..|+.++-.. .+.-..+.|..++||||++|..+
T Consensus 505 Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakL 584 (630)
T KOG0742|consen 505 RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKL 584 (630)
T ss_pred hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHH
Confidence 999999999999999999999999764210 01114567889999999999988
Q ss_pred HHHHH
Q psy15622 150 CRDAA 154 (217)
Q Consensus 150 ~~~a~ 154 (217)
+....
T Consensus 585 va~vQ 589 (630)
T KOG0742|consen 585 VASVQ 589 (630)
T ss_pred HHHHH
Confidence 75443
No 40
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.69 E-value=1.5e-16 Score=134.99 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=104.5
Q ss_pred CCCCCCcc-cchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 14 PDVQWSDI-ANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 14 ~~~~~~dl-~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
...+|+++ +|+--...-+.+.+...-+ .+....+ ++|.+++||||||||||++|+++|+.++.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 44667777 4444444444444332111 1111122 78899999999999999999999985554
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence
Q ss_pred --hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccC----CCHHhHHHHH
Q psy15622 79 --VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG----YSASDIVVVC 150 (217)
Q Consensus 79 --~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g----~s~~di~~l~ 150 (217)
++++|||+|+.||++++| ||++.+ ..|+.++|.+|++.+++..++. ..++..|+..++| |.|+--.+++
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 236899999999999999 999965 4799999999999999998775 5778888888876 5666667777
Q ss_pred HHHHHHHHHHH
Q psy15622 151 RDAAFMAMRAA 161 (217)
Q Consensus 151 ~~a~~~a~~~~ 161 (217)
.++...-+.+.
T Consensus 345 d~~v~~~i~~~ 355 (413)
T PLN00020 345 DDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHHh
Confidence 77766655553
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=3.3e-15 Score=127.61 Aligned_cols=178 Identities=17% Similarity=0.134 Sum_probs=132.2
Q ss_pred ccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
.++.+.+|++++|.+++++.+...+..... .+.++.+++|+||||||||++|+++|+.++.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 455677999999999999999888753211 1245578999999999999999999986543
Q ss_pred --------------------------------------------------------------hhccccCCCCCCcHHHHh
Q psy15622 79 --------------------------------------------------------------VHCGASNFPWNIDDAFLR 96 (217)
Q Consensus 79 --------------------------------------------------------------~~~~~t~~~~~l~~~l~~ 96 (217)
.++++|+.+..+++++.+
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH
Confidence 124677888889999999
Q ss_pred hccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccc
Q psy15622 97 RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPM 175 (217)
Q Consensus 97 rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 175 (217)
||...+.++.++.+++.++++......++. ++..+..+++.+.|. ++.+..++..+...+..+.
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~~a~~~~-------------- 234 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRDFAQVKG-------------- 234 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcC--------------
Confidence 999999999999999999999988877654 344577888888874 5777777766554443321
Q ss_pred cccCCCccHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHh
Q psy15622 176 AQLKRPVTKADFEMAIAKCRKT---VTAADIRQFEEWNEKF 213 (217)
Q Consensus 176 ~~~~~~vt~~df~~al~~~~p~---~~~~~i~~~~~~~~~~ 213 (217)
...++.+++..+++.+... ....+...+..+.+.|
T Consensus 235 ---~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (328)
T PRK00080 235 ---DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKF 272 (328)
T ss_pred ---CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHc
Confidence 3458888888888887543 3445555555455554
No 42
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=5.7e-15 Score=124.67 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=113.2
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------------
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------ 78 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------ 78 (217)
+|+|++|++++++.|...+..... ...++.+++|+||||||||++|+++|+.++.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHH
Confidence 689999999999999988853221 1223467999999999999999999986543
Q ss_pred --------------------------------------------------------hhccccCCCCCCcHHHHhhccccc
Q psy15622 79 --------------------------------------------------------VHCGASNFPWNIDDAFLRRLEKRI 102 (217)
Q Consensus 79 --------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~~~i 102 (217)
.++++|+.+..+++++++||...+
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence 123567778889999999998889
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCC
Q psy15622 103 YVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRP 181 (217)
Q Consensus 103 ~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 181 (217)
.++.++.++..++++......+.. ++..++.+++.+.|. ++.+..++..+...|.... ...
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~~~~-----------------~~~ 216 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQVRG-----------------QKI 216 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHcC-----------------CCC
Confidence 999999999999999888765543 334567888888885 4666777765543332211 234
Q ss_pred ccHHHHHHHHHhc
Q psy15622 182 VTKADFEMAIAKC 194 (217)
Q Consensus 182 vt~~df~~al~~~ 194 (217)
++.+++..++..+
T Consensus 217 it~~~v~~~l~~l 229 (305)
T TIGR00635 217 INRDIALKALEML 229 (305)
T ss_pred cCHHHHHHHHHHh
Confidence 6777777777664
No 43
>KOG0735|consensus
Probab=99.66 E-value=9.7e-16 Score=137.60 Aligned_cols=120 Identities=22% Similarity=0.257 Sum_probs=98.3
Q ss_pred hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
.++++.+....+++.+.+ +|+.++.+|.|+..+|.+|++.++++...+ ...|++.++..|+||...|++.++.+|..
T Consensus 543 a~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~ 622 (952)
T KOG0735|consen 543 AVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIH 622 (952)
T ss_pred EEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHH
Confidence 345888888899998888 999999999999999999999999875533 34466779999999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcCC------------CCCHHHHHHHHHHHH
Q psy15622 156 MAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRK------------TVTAADIRQFEEWNE 211 (217)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p------------~~~~~~i~~~~~~~~ 211 (217)
.|+...+... +..+|.++|.++|+.+.| ...|+|+.++.+.++
T Consensus 623 ~a~leris~~-------------~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 623 EAFLERISNG-------------PKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred HHHHHHhccC-------------cccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 9985553222 237999999999999986 378999877665544
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.63 E-value=2.6e-15 Score=124.37 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=101.3
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-C--CCceEEEecCCCCcHHHHHHHHHHHhch---------------
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-K--PWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------- 78 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~vll~Gp~G~GKTtla~aia~~~~~--------------- 78 (217)
.+++++|++++|+.+++.+.++.......+.+. . .+.+++|+|||||||||+|+++|+.+..
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467899999999999999988765433222222 1 2246999999999999999999874310
Q ss_pred -------------------------------------------------------------hhccccCC-----CCCCcH
Q psy15622 79 -------------------------------------------------------------VHCGASNF-----PWNIDD 92 (217)
Q Consensus 79 -------------------------------------------------------------~~~~~t~~-----~~~l~~ 92 (217)
.++.++.. ...+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p 163 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNP 163 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcCh
Confidence 11122211 123678
Q ss_pred HHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc---------cCCCHHhHHHHHHHHHHHHHHHHH
Q psy15622 93 AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQL---------EGYSASDIVVVCRDAAFMAMRAAI 162 (217)
Q Consensus 93 ~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~---------~g~s~~di~~l~~~a~~~a~~~~~ 162 (217)
++.+||+..+.||.++.+++.+|++.++...+.. ++..+..+++.. ..-+++.+.+++..|......|.+
T Consensus 164 ~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 164 GLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred HHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999876543 222344443321 123467777888777777766665
Q ss_pred hC
Q psy15622 163 RG 164 (217)
Q Consensus 163 ~~ 164 (217)
..
T Consensus 244 ~~ 245 (261)
T TIGR02881 244 DK 245 (261)
T ss_pred cc
Confidence 43
No 45
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.63 E-value=4e-14 Score=115.67 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=136.9
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
...+..|+|.+|++.+|+.|.-++..... .+...-++||+||||.||||||+.||++++.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 44578999999999999999988864322 2234578999999999999999999998876
Q ss_pred -------------------------------------------------------------hhccccCCCCCCcHHHHhh
Q psy15622 79 -------------------------------------------------------------VHCGASNFPWNIDDAFLRR 97 (217)
Q Consensus 79 -------------------------------------------------------------~~~~~t~~~~~l~~~l~~r 97 (217)
-.|++|.+...+...++.|
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdR 171 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDR 171 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHh
Confidence 2338888888999999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccccccc
Q psy15622 98 LEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMA 176 (217)
Q Consensus 98 f~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 176 (217)
|.....+..-+.++..+|+...-..+++. .+....++|+++.| +++-..++.++..-.|.-+.
T Consensus 172 FGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~--------------- 235 (332)
T COG2255 172 FGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVKG--------------- 235 (332)
T ss_pred cCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhc---------------
Confidence 99999999999999999999988877765 44456788999887 57666666665554443332
Q ss_pred ccCCCccHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHhC
Q psy15622 177 QLKRPVTKADFEMAIAKCR---KTVTAADIRQFEEWNEKFG 214 (217)
Q Consensus 177 ~~~~~vt~~df~~al~~~~---p~~~~~~i~~~~~~~~~~~ 214 (217)
...++.+-..+|++.+. .-..+-|.+-+.-..++|+
T Consensus 236 --~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~ 274 (332)
T COG2255 236 --DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFG 274 (332)
T ss_pred --CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhC
Confidence 34477777777877775 2456677777777777773
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.63 E-value=1.4e-15 Score=121.39 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=94.9
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
...+.+|+|++|++.++..+.-++..... -+.+..+++||||||+||||||+.||+.++.
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~-------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKK-------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHC-------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHh-------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 45678999999999999998877653221 1123468999999999999999999997765
Q ss_pred -------------------------------------------------------------hhccccCCCCCCcHHHHhh
Q psy15622 79 -------------------------------------------------------------VHCGASNFPWNIDDAFLRR 97 (217)
Q Consensus 79 -------------------------------------------------------------~~~~~t~~~~~l~~~l~~r 97 (217)
.++++|++...+...++.|
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdR 169 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDR 169 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTT
T ss_pred HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhh
Confidence 2348888889999999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 98 LEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 98 f~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
|.....+..-+.++..+|+......+++. ++....++|.++.| +++-..++.+
T Consensus 170 Fgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 170 FGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp SSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred cceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 99988898899999999999888777765 44456788888887 5665555544
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.60 E-value=2.3e-14 Score=120.04 Aligned_cols=145 Identities=15% Similarity=0.191 Sum_probs=102.8
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhc----CCCceEEEecCCCCcHHHHHHHHHHHhch----------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIR----KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~Gp~G~GKTtla~aia~~~~~---------------- 78 (217)
.+++|++++|+.+++.+.+.. .+..+...+ .++.+++|+||||||||++|+++|+.+..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999999988733 344444333 23345999999999999999999874421
Q ss_pred -------------------------------------------------------------hhccccCCC-----CCCcH
Q psy15622 79 -------------------------------------------------------------VHCGASNFP-----WNIDD 92 (217)
Q Consensus 79 -------------------------------------------------------------~~~~~t~~~-----~~l~~ 92 (217)
.+|++++.. ..++|
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np 181 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNP 181 (287)
T ss_pred HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCH
Confidence 122333211 12358
Q ss_pred HHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHH----c--cCCC-HHhHHHHHHHHHHHHHHHHHhC
Q psy15622 93 AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQ----L--EGYS-ASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 93 ~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~----~--~g~s-~~di~~l~~~a~~~a~~~~~~~ 164 (217)
.+.+||+..+.|+.++.+++.+|+..++++.+.. .+.....+... . +.|. ++++.+++..+......|....
T Consensus 182 ~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 182 GLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999876533 11122222222 1 3455 7999999999998888887543
No 48
>KOG0744|consensus
Probab=99.59 E-value=3.4e-15 Score=123.77 Aligned_cols=159 Identities=22% Similarity=0.250 Sum_probs=114.9
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhch----------------
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------------- 78 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~---------------- 78 (217)
-|+.|+-..++|+.|.+++...+...+....-+ .-.+-+||+||||||||+|++++|+.+..
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 467788899999999999986665444433322 22356999999999999999999986654
Q ss_pred -------------------------------------------------------------------------------h
Q psy15622 79 -------------------------------------------------------------------------------V 79 (217)
Q Consensus 79 -------------------------------------------------------------------------------~ 79 (217)
.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 2
Q ss_pred hccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC---CCC---------------CcccHHHHHHH-ccC
Q psy15622 80 HCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV---DLA---------------SDLDLELVSDQ-LEG 140 (217)
Q Consensus 80 ~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~---~~~---------------~~~~~~~la~~-~~g 140 (217)
+.+|+|-.+.+|.++..|.|-+.++++|+...+.+|++.++..+ ++- .+.....+... +.|
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~g 379 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVG 379 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcC
Confidence 33888999999999999999999999999999999999988653 110 01112223333 379
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhc
Q psy15622 141 YSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKC 194 (217)
Q Consensus 141 ~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 194 (217)
+||+-+..+--.|. .... ...+++.++|..|+-..
T Consensus 380 LSGRtlrkLP~Lah----a~y~---------------~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 380 LSGRTLRKLPLLAH----AEYF---------------RTFTVDLSNFLLALLEA 414 (423)
T ss_pred CccchHhhhhHHHH----Hhcc---------------CCCccChHHHHHHHHHH
Confidence 99998876654332 2221 13579999999887543
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=9.9e-14 Score=123.37 Aligned_cols=121 Identities=20% Similarity=0.207 Sum_probs=94.5
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+..++++.+|+|++|++.+++.|+..+.. ++.+.++||+|||||||||+|+++|+.++.
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 455688999999999999999988877642 234567999999999999999999986531
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 233
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccC
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG 140 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g 140 (217)
.+|+.+..+++++.+|+. .+.|+.++.++...+++..+...++. ++..++.|++.+.|
T Consensus 152 lattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred EEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 566678889999999995 78899999999999999888765543 34446677776553
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.53 E-value=2.4e-13 Score=113.83 Aligned_cols=144 Identities=20% Similarity=0.169 Sum_probs=102.3
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhc----CCCceEEEecCCCCcHHHHHHHHHHHhch-----------------
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIR----KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------------- 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~Gp~G~GKTtla~aia~~~~~----------------- 78 (217)
+++|++++|+.+.+.+.+ ...+..+...+ .|+.+++|+||||||||++|+++|..+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999988 44555555434 24458999999999999999888864421
Q ss_pred ------------------------------------------------------------hhccccCC--CC---CCcHH
Q psy15622 79 ------------------------------------------------------------VHCGASNF--PW---NIDDA 93 (217)
Q Consensus 79 ------------------------------------------------------------~~~~~t~~--~~---~l~~~ 93 (217)
.++++++. .+ .++++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~ 181 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPG 181 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHH
Confidence 11133221 12 24789
Q ss_pred HHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc------cC-CCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 94 FLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQL------EG-YSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 94 l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~------~g-~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
+.+||...+.||.++.+++.+|++.++++.+.. +......+.... +. -+++++.+++..+......|....
T Consensus 182 L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 182 FSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999886542 222233333331 11 247899999999888777776543
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.5e-13 Score=118.99 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=102.7
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+|++|++.+++.+...+.. ++.+..++|+||+|+||||+|+++|+.+.+
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 345678999999999999999999887742 233467899999999999999999986631
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 233
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.+|+.++.+.+.+.+|+ ..+.|+.++.++..++++..++..+.. ++..+..++..+.| +.+++.+++..+
T Consensus 154 l~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~ 224 (363)
T PRK14961 154 LATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHA 224 (363)
T ss_pred EEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 56677888889999998 578999999999999999988876643 34456667777665 566666665544
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.6e-13 Score=121.02 Aligned_cols=133 Identities=21% Similarity=0.188 Sum_probs=103.8
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+|++|++.+...|...+.. ++.+..+||+||+||||||+|+++|+.++.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 456788999999999999999999888752 223456999999999999999999986542
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.+|
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFI 155 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFI 155 (484)
T ss_pred CCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEE
Confidence 444
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.+|+.++.|.+.+++|+. .+.|..++.++..+.++..+...++. ++..+..|++.+.| +.++..++...+
T Consensus 156 LaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 156 LATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQA 226 (484)
T ss_pred eecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 788889999999999994 57777778888888888888776654 44557778888776 466666555544
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.1e-13 Score=116.15 Aligned_cols=171 Identities=20% Similarity=0.195 Sum_probs=105.7
Q ss_pred cCCCCCCCcccchHHHH---HHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 12 ERPDVQWSDIANQVKAK---KLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
.-.+.+++|++|++.+. .-|++.+.. ....+++|||||||||||+|+.||+..+.
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 34578999999998875 445555532 12357999999999999999999986655
Q ss_pred --------------------------------------------------hhccccCCCC-CCcHHHHhhccccccccCC
Q psy15622 79 --------------------------------------------------VHCGASNFPW-NIDDAFLRRLEKRIYVPLP 107 (217)
Q Consensus 79 --------------------------------------------------~~~~~t~~~~-~l~~~l~~rf~~~i~~~~p 107 (217)
++++||.+|. .+++++++|. .++.+...
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~-~vf~lk~L 163 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRA-RVFELKPL 163 (436)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhh-heeeeecC
Confidence 3447776666 8999999998 46677777
Q ss_pred CHHHHHHHHHHHHh--hCCCC------CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccC
Q psy15622 108 SSSGRQELLRLILR--QVDLA------SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLK 179 (217)
Q Consensus 108 ~~~~r~~il~~~l~--~~~~~------~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 179 (217)
+.++..++++..+. ..++. ++...+.++.. +.+|...+....-+.+.... ..
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~----s~GD~R~aLN~LE~~~~~~~----------------~~ 223 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL----SNGDARRALNLLELAALSAE----------------PD 223 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh----cCchHHHHHHHHHHHHHhcC----------------CC
Confidence 88888888888443 23333 12223444444 45577655543322221110 01
Q ss_pred CCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 180 RPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 180 ~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
..++.+++.+.+.+-.+ ....+-+.+.+.-..|+.|
T Consensus 224 ~~~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKS 259 (436)
T COG2256 224 EVLILELLEEILQRRSA-RFDKDGDAHYDLISALHKS 259 (436)
T ss_pred cccCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHh
Confidence 13446777777766544 3333334444554455444
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2e-13 Score=121.41 Aligned_cols=134 Identities=21% Similarity=0.283 Sum_probs=105.2
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+|++|++.+++.|...+.. ++.+.++||+||+|+||||+|+.+|+.+++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 34578899999999999999998877642 345678999999999999999999986532
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3446
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
+|+.+..+.+.+++|+ ..+.|..++.++..+.+...+++.+.. ++..+..+++.+.| +.+++.+++..+..
T Consensus 152 atte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 152 ATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred EeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 7788888999999998 457888888899999999988876654 44456777888765 67777777665543
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.1e-13 Score=125.01 Aligned_cols=134 Identities=20% Similarity=0.196 Sum_probs=106.3
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+..+|.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+++++|+.+++
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 356789999999999999999999988742 234467899999999999999999986642
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.+|
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI 153 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI 153 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE
Confidence 455
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
.+||+++.|.+.+++|+ ..+.|..++.++..+.++.+++..++. ++..+..|++.+.| +.++..++...+.
T Consensus 154 LaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 154 LATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred EEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88899999999999999 578888889999999999988776654 44556778888776 4566666655444
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.2e-13 Score=122.21 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=105.3
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+++
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 356789999999999999999999988852 234567899999999999999999997643
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 344
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..++..++. .+..+..+++.+.| +.+++.+++..+.
T Consensus 154 lattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 154 LATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred EEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 67788888998999998 567788888888888888888876654 33456677777765 6777777776553
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.6e-13 Score=122.22 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=105.0
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++++.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+++
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pC 72 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPC 72 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCC
Confidence 345688999999999999999999988852 234578999999999999999999987642
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 73 g~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 73 EVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred ccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE
Confidence 344
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.+|+.+..+...+++|+ .++.|..++.++..+.++..+.+.++. .+..+..+++.+.| +.+++.+++..+
T Consensus 153 LaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQa 223 (702)
T PRK14960 153 FATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQA 223 (702)
T ss_pred EEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67788888999999998 578888889999999999988877654 44456677877765 566666665544
No 58
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=4.5e-13 Score=119.81 Aligned_cols=134 Identities=24% Similarity=0.232 Sum_probs=106.9
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+|++|++.+...|...+.. ++.+.++||+||+||||||+|+++|+.+++
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 45688999999999999999998876642 234578999999999999999999987632
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
.++.+|+.++.+.+.+++|+ ..+.|+.++.++...+++..+++.+.. ++..+..+++.+.| +.+++.+++..+..
T Consensus 160 vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~ 235 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAAS 235 (507)
T ss_pred EEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 23366778888999999998 578899999999999999999877654 33456778888776 77888777776643
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=4.5e-13 Score=121.40 Aligned_cols=134 Identities=20% Similarity=0.206 Sum_probs=106.0
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+++.+|+.+++
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 345689999999999999999999988852 234567899999999999999999986642
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~ 153 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPE 153 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCC
Confidence
Q ss_pred --hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 79 --VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLAS-DLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 79 --~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
.+|.+|+.++.|.+.+++|+ ..+.|+.++.++..+.++.++...++.- +..+..|++.+.| +.++..+++..+.
T Consensus 154 ~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 154 HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred CceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 45588899999999999998 6888899999999999988887666542 2335667777766 5677766665543
No 60
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.46 E-value=6.7e-13 Score=119.97 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=118.1
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh----------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY---------- 76 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~---------- 76 (217)
+....++++.+|++++|.+...+.++..+.. ..+..++|+||||||||++|+++..+.
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~ 120 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKE 120 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCC
Confidence 3456678889999999999999888865421 123679999999999999999985310
Q ss_pred -------------------c-------------------------------------h----------------------
Q psy15622 77 -------------------N-------------------------------------Q---------------------- 78 (217)
Q Consensus 77 -------------------~-------------------------------------~---------------------- 78 (217)
. .
T Consensus 121 ~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le 200 (531)
T TIGR02902 121 GAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLE 200 (531)
T ss_pred CCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -----------------------------------hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC
Q psy15622 79 -----------------------------------VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV 123 (217)
Q Consensus 79 -----------------------------------~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~ 123 (217)
++++||+.++.+++++++|+. .++|+.++.++..++++..+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~ 279 (531)
T TIGR02902 201 DRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKI 279 (531)
T ss_pred hCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHc
Confidence 113567789999999999985 67788888999999999999887
Q ss_pred CCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 124 DLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 124 ~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
++. ++..++.+++.+. +++++.++++.|+..|..+. ...+|.+|+..++..-+
T Consensus 280 ~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-----------------~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 280 GINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG-----------------RKRILAEDIEWVAENGN 333 (531)
T ss_pred CCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC-----------------CcEEcHHHHHHHhCCcc
Confidence 654 3334556666543 78999999998887665432 34599999999987543
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=1.5e-12 Score=116.56 Aligned_cols=135 Identities=27% Similarity=0.267 Sum_probs=102.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+++|++|.+.+++.|..++.... -+.+++.+||+|||||||||+|+++|+.++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 4678899999999999999999999886322 1234688999999999999999999986653
Q ss_pred --------------------------------------------------------hhccccCCCCCCcHHHHhhccccc
Q psy15622 79 --------------------------------------------------------VHCGASNFPWNIDDAFLRRLEKRI 102 (217)
Q Consensus 79 --------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~~~i 102 (217)
.++.++|.+..+...-+++....+
T Consensus 76 r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I 155 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMI 155 (482)
T ss_pred ccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEE
Confidence 344677888877773344444678
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 103 YVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 103 ~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
.|+.|+..+...+++..+...++. ++..++.|++.+ ++|+..+......
T Consensus 156 ~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~ 205 (482)
T PRK04195 156 EFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQA 205 (482)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 999999999999999998776654 334466666664 4588776655443
No 62
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.3e-12 Score=118.68 Aligned_cols=134 Identities=27% Similarity=0.309 Sum_probs=105.5
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------- 78 (217)
...+.++.+.+|+|++|++.+++.|+..+.. ++.+..+||+||+|||||++|+.+|+.+.+
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~p 72 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEP 72 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3567789999999999999999999988852 234577999999999999999999986642
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
++
T Consensus 73 C~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~if 152 (559)
T PRK05563 73 CNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIF 152 (559)
T ss_pred CCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEE
Confidence 33
Q ss_pred ccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 81 ~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
|.+|+.++.+.+.+++|+. .+.|+.|+.++....++..++..++. ++..+..++..+.| +.++...++..+
T Consensus 153 Ilatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~ 224 (559)
T PRK05563 153 ILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQA 224 (559)
T ss_pred EEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4667788999999999985 57788899999999999988877754 33446667777665 666666665544
No 63
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.1e-12 Score=119.80 Aligned_cols=134 Identities=21% Similarity=0.224 Sum_probs=106.4
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+.+
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 356689999999999999999999988752 244578999999999999999999986532
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.+|
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred cccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 344
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
.+|+.+..+...+++|+ ..+.|+.++.++....++..+...++. ++..+..|++.+.| +.+++.+++..+.
T Consensus 154 LaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqai 225 (709)
T PRK08691 154 LATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAI 225 (709)
T ss_pred EEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 67788889999999998 567888899999999999999877654 33446777777764 6777777776554
No 64
>KOG0989|consensus
Probab=99.44 E-value=5.9e-12 Score=104.00 Aligned_cols=127 Identities=21% Similarity=0.231 Sum_probs=96.4
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------- 78 (217)
+.+..+|.+.+++|+.|++.+.+.|...+.- +....+|||||||||||+.++++|..+..
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3467789999999999999999999988842 12357999999999999999999985544
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
.+|..||..+.
T Consensus 92 l~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 92 LELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred hhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 45588999999
Q ss_pred CcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHH
Q psy15622 90 IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVC 150 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~ 150 (217)
|...+.+|+. .+.|+....+...+.++.+..+-+++ ++..+..++..+ ++|+....
T Consensus 172 ii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S----~GdLR~Ai 228 (346)
T KOG0989|consen 172 IIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKIS----DGDLRRAI 228 (346)
T ss_pred CChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHH
Confidence 9999999986 45556656666777788877776664 333455566654 44665443
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.8e-12 Score=118.47 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=104.2
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+++
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 45678899999999999999999888752 223466899999999999999999986533
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 3446
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
+|+.+..|.+.+++|+ ..+.|+.++.++....++..+...++. ++..+..|++.+.| +.++..+++..+.
T Consensus 155 ~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 155 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAI 225 (647)
T ss_pred ecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7888999999999997 788899999999999999888765554 33446677777766 5667766665543
No 66
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.44 E-value=1.8e-12 Score=104.82 Aligned_cols=133 Identities=21% Similarity=0.208 Sum_probs=98.1
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
+....++.+++|+|.+.+++.|.+....++. +.|...+||+|++|||||++++++...+..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3455679999999999999999998865443 246789999999999999999999985544
Q ss_pred -----------------------------------------------------hhccccCCCCCCcH-------------
Q psy15622 79 -----------------------------------------------------VHCGASNFPWNIDD------------- 92 (217)
Q Consensus 79 -----------------------------------------------------~~~~~t~~~~~l~~------------- 92 (217)
.+++|+|+-+.+++
T Consensus 90 ~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~ei 169 (249)
T PF05673_consen 90 DLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEI 169 (249)
T ss_pred HhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCcccc
Confidence 34477776554432
Q ss_pred ----------HHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCc-ccHHH----HHHHccCCCHHhHHHHH
Q psy15622 93 ----------AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASD-LDLEL----VSDQLEGYSASDIVVVC 150 (217)
Q Consensus 93 ----------~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~-~~~~~----la~~~~g~s~~di~~l~ 150 (217)
++-.||...+.|..|+.++..+|++.++++.++.-+ .++.. .|..-.|.||+-..+.+
T Consensus 170 h~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 170 HPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFI 242 (249)
T ss_pred CcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 233499999999999999999999999998887533 22221 22333456666544443
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.6e-12 Score=121.16 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=103.0
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++++.+|++|+|++.++..|...+.. ++.+..+||+||+||||||+|+++|+.+++
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 345688999999999999999999887742 234566899999999999999999985532
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred CCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 233
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
.+|+.+..|.+.+++|+ .++.|+.++.++....++..+...++. .+..+..|++.+.| +.+++.+++..+.
T Consensus 154 LaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 154 LATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred EECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 66788888999999998 568888889999888888888765543 33346667777766 5667777766554
No 68
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.2e-12 Score=117.64 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=103.3
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+++
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 45688999999999999999999988752 233467899999999999999999886641
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~ 154 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY 154 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCC
Confidence
Q ss_pred -hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 79 -VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 79 -~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.++.+|+.+..+...+++|+ ..+.|..++.++..+.++..+.+.++. ++..+..|++.+.| +.+++.+++..+
T Consensus 155 ~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ 229 (618)
T PRK14951 155 LKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQA 229 (618)
T ss_pred eEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 34467778888988999998 678888888899999999888777664 33446777877765 666666665444
No 69
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3e-12 Score=115.55 Aligned_cols=133 Identities=22% Similarity=0.234 Sum_probs=101.8
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+.+
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45678889999999999999999888752 234567899999999999999999986632
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 2336
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
+|+.+..+.+.+++|+ ..+.|+.++.++..+.+...+++.++. .+..+..+++.+.| +.+++.+++..+.
T Consensus 155 ~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai 225 (527)
T PRK14969 155 ATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAI 225 (527)
T ss_pred EeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 6777888888888898 788899999999888888888766654 33345666766654 5666666666553
No 70
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.2e-12 Score=115.63 Aligned_cols=132 Identities=25% Similarity=0.267 Sum_probs=101.6
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+..++.+.+|++++|++.+++.|...+.. ++.+.++||+||+|+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456789999999999999999999887742 234578999999999999999999986531
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 344
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
.+|+.+..+.+.+++|+. .+.|+.++..+....++..+.+.+.. ++..+..++..+.| +.+++.++...
T Consensus 154 L~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLek 223 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQ 223 (605)
T ss_pred EECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 677788999999999985 78999999999999999888776643 33345566666654 45555555444
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.5e-12 Score=114.90 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=100.6
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 45678899999999999999999887752 233467899999999999999999986541
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 2346
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+++.++. ++..+..+++.+.| +.+++.+++..+.
T Consensus 155 ~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~i 225 (546)
T PRK14957 155 ATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQAI 225 (546)
T ss_pred EECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 6677888888888898 788899999999888888888776654 33445666666653 4555555555443
No 72
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=3.7e-12 Score=117.29 Aligned_cols=133 Identities=23% Similarity=0.264 Sum_probs=101.7
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+..++++.+|++++|++.+++.|+..+.. ++.+..+||+||+|+|||++|+++|+.+.+
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 356788999999999999999999988852 234577899999999999999999975421
Q ss_pred --------------------------------------------------------------------------hhcccc
Q psy15622 79 --------------------------------------------------------------------------VHCGAS 84 (217)
Q Consensus 79 --------------------------------------------------------------------------~~~~~t 84 (217)
.++.+|
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 334677
Q ss_pred CCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 85 NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 85 ~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+.++.|.+.+++|+. ++.|..++.++..+.+...+.+.++. .+..+..+++.+.| +.+++..++..+
T Consensus 156 te~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 156 TEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred CChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 788999999999995 78899999999999999888776654 22335566666654 455555555443
No 73
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.40 E-value=3.4e-12 Score=120.20 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------------------
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------------- 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------------------- 78 (217)
+++|++++++.+.+++......+ ...+..++|+||||||||++|++||+.++.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58899999999999876543211 112347999999999999999999985432
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
++++|||.++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID 474 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch
Confidence 3358999999
Q ss_pred CCcHHHHhhccccccccCCCHHHHHHHHHHHH-----hhCCCC------CcccHHHHHH-HccCCCHHhHHHHHHHHHHH
Q psy15622 89 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL-----RQVDLA------SDLDLELVSD-QLEGYSASDIVVVCRDAAFM 156 (217)
Q Consensus 89 ~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l-----~~~~~~------~~~~~~~la~-~~~g~s~~di~~l~~~a~~~ 156 (217)
.+++++++||. ++.|+.++.+++.+|++.++ +..++. ++..+..+++ .+..+..+++++.+...+..
T Consensus 475 ~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~ 553 (775)
T TIGR00763 475 TIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRK 553 (775)
T ss_pred hCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHH
Confidence 99999999995 78999999999999998876 222332 1223444554 33455567777777666666
Q ss_pred HHHHHHhCCCCcccccccccccCCCccHHHHHHHHH
Q psy15622 157 AMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIA 192 (217)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~ 192 (217)
+..+........ ........++.+++...+.
T Consensus 554 ~~~~~~~~~~~~-----~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 554 AAVKLVEQGEKK-----KSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHhccCcc-----cCCcccccCCHHHHHHhcC
Confidence 655544211110 0011235688888777664
No 74
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.2e-12 Score=116.57 Aligned_cols=132 Identities=24% Similarity=0.252 Sum_probs=102.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+.+
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 45688999999999999999999988752 234577899999999999999999987641
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.+|.
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 3446
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+|+.++.|.+.+++|+ ..+.|..++.++....+...+++.++. ++..+..+++.+.| +.+++.++...+
T Consensus 155 ~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldql 224 (576)
T PRK14965 155 ATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQV 224 (576)
T ss_pred EeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7788899999999998 478888888888888888888777654 34456667777665 455555555433
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.40 E-value=4.4e-12 Score=109.10 Aligned_cols=131 Identities=25% Similarity=0.293 Sum_probs=97.3
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++++.+|++++|++.+++.|.+.+.. ++.+..+||+||+|+|||++++++++.+..
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34577899999999999999999987742 234567999999999999999999876420
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 2335
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
+|+.++.+.+.+.+|+ ..+.|+.|+.++..++++..++..++. ++..+..+++.+.| +.+.+.+.+..
T Consensus 153 ~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lek 221 (355)
T TIGR02397 153 ATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQ 221 (355)
T ss_pred EeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 6677777788888888 467889999999999999988877653 33345556666554 44444444433
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=4.3e-12 Score=113.79 Aligned_cols=130 Identities=20% Similarity=0.251 Sum_probs=99.7
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+|++|++.+++.|...+.. ++.+..+||+|||||||||+|+++|+.+.+
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 45789999999999999999999988853 234466899999999999999999986631
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
.++.+
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred ChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 23366
Q ss_pred cCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 84 SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 84 t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
++.+..+.+.+.+|+. .+.|+.++.++..+.++..+++.++. ++..+..+++.+.| +.+++.+++.
T Consensus 153 t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Le 219 (504)
T PRK14963 153 TTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLE 219 (504)
T ss_pred cCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 7888899999999985 68899999999999999998877764 33345666666654 3344444433
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=99.39 E-value=5.8e-12 Score=107.25 Aligned_cols=126 Identities=19% Similarity=0.117 Sum_probs=95.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+++|++|++++.+.|+..+.. +.. .+++|+||||||||++|+++|+.+..
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 45688999999999999999999877642 111 35999999999999999999986410
Q ss_pred ------------------------------------------------------------hhccccCCCCCCcHHHHhhc
Q psy15622 79 ------------------------------------------------------------VHCGASNFPWNIDDAFLRRL 98 (217)
Q Consensus 79 ------------------------------------------------------------~~~~~t~~~~~l~~~l~~rf 98 (217)
.++.++|....+.+++++|+
T Consensus 71 n~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 71 NASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred cccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 13356678888889999998
Q ss_pred cccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 99 EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 99 ~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
..+.|+.|+.++....++..+++.++. ++..+..++..+. +|+..+..
T Consensus 151 -~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln 199 (319)
T PLN03025 151 -AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALN 199 (319)
T ss_pred -hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHH
Confidence 578999999999999999988776654 3344566666554 45554443
No 78
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.7e-12 Score=114.13 Aligned_cols=137 Identities=23% Similarity=0.247 Sum_probs=113.7
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------- 78 (217)
+....+|++..|+|++|++.+...|...+.. ++-..+.+|.||.|+||||+||.+|+.+++
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP 72 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP 72 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc
Confidence 4567889999999999999999999998863 234578999999999999999999997766
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
.+
T Consensus 73 C~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~F 152 (515)
T COG2812 73 CGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKF 152 (515)
T ss_pred chhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEE
Confidence 55
Q ss_pred ccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHH
Q psy15622 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFM 156 (217)
Q Consensus 81 ~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~ 156 (217)
+.+|..+++++..+++|+. ++.|...+.++....+..++.+-++. .+..+..+++..+| |.+|...+...+...
T Consensus 153 IlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred EEecCCcCcCchhhhhccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHc
Confidence 5888999999999999984 66777788889999999999888776 33446677788776 688988888877654
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=7.8e-12 Score=112.23 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=105.0
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+|||++|+++|+.+..
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 345688999999999999999999988842 234467899999999999999999986521
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 234
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
.+|+.+..+.+.+++|+ ..+.|..++.++....++..++..+.. ++..+..+++.+.| +.+++.+++..+..
T Consensus 152 L~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~ 224 (535)
T PRK08451 152 LATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAII 224 (535)
T ss_pred EEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHH
Confidence 66677899999999996 578899999999888888888876654 34456677777665 66777777665543
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=3.1e-11 Score=98.53 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=99.9
Q ss_pred cCCCCCCCccc-c-hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 12 ERPDVQWSDIA-N-QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~-g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
-.++.+|++++ | ...+...+++.... ..+..++|+||+|||||+|++++++.+..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 44667888876 4 45556666655422 12257999999999999999999864320
Q ss_pred --------------------------------------------------hhcc-ccCCCCC---CcHHHHhhcc--ccc
Q psy15622 79 --------------------------------------------------VHCG-ASNFPWN---IDDAFLRRLE--KRI 102 (217)
Q Consensus 79 --------------------------------------------------~~~~-~t~~~~~---l~~~l~~rf~--~~i 102 (217)
.++. +++.|.. +.+.+.+|+. .++
T Consensus 83 ~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 83 KRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred HHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 1223 3344444 5789999996 778
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCC
Q psy15622 103 YVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRP 181 (217)
Q Consensus 103 ~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 181 (217)
.+..|+.+++.++++......++. ++.-++.|++..+| +.+.+..++......+... ..+
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~------------------~~~ 223 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA------------------QRK 223 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc------------------CCC
Confidence 899999999999998866655554 44457778888775 5666666665432222111 345
Q ss_pred ccHHHHHHHHH
Q psy15622 182 VTKADFEMAIA 192 (217)
Q Consensus 182 vt~~df~~al~ 192 (217)
||.+.+.+++.
T Consensus 224 it~~~~k~~l~ 234 (235)
T PRK08084 224 LTIPFVKEILK 234 (235)
T ss_pred CCHHHHHHHHc
Confidence 88888777663
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.36 E-value=9.1e-12 Score=116.70 Aligned_cols=176 Identities=23% Similarity=0.306 Sum_probs=119.0
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh----------ch-----
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY----------NQ----- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~----------~~----- 78 (217)
.+-++++++|.++.+..+.+.+.. +...+++|+||||||||++++++|..+ +.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 455778888888888876655532 123679999999999999999999754 11
Q ss_pred --------------------------------------------------------------------hhccccCC----
Q psy15622 79 --------------------------------------------------------------------VHCGASNF---- 86 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~---- 86 (217)
.++++|+.
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHH
Confidence 23355554
Q ss_pred -CCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCC----C-CCcccHHHHHHHccCCCHHh-----HHHHHHHHHH
Q psy15622 87 -PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD----L-ASDLDLELVSDQLEGYSASD-----IVVVCRDAAF 155 (217)
Q Consensus 87 -~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~----~-~~~~~~~~la~~~~g~s~~d-----i~~l~~~a~~ 155 (217)
...+|+++.|||. .+.++.|+.+++.+|++.+...+. + -.+..+..++..+..|-+.. ...+..+|..
T Consensus 325 ~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 325 NHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 3467999999997 689999999999999998776532 1 13344666666666554432 2344444432
Q ss_pred HHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC--C--CCCHHHHHHHHHHHHHhCC
Q psy15622 156 MAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR--K--TVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~--p--~~~~~~i~~~~~~~~~~~~ 215 (217)
.+. +... ......|+.+|+..++.... | .+++++...+.+..+.+..
T Consensus 404 ~~~---~~~~----------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 404 SFR---LRPK----------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred hhh---cCcc----------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc
Confidence 111 1000 01134599999999999885 3 4677888888877776654
No 82
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.2e-11 Score=112.24 Aligned_cols=133 Identities=19% Similarity=0.194 Sum_probs=101.8
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+|||++|+++|+.+.+
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC 73 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC 73 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC
Confidence 456788999999999999999999988852 234567999999999999999999986531
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 74 ~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 74 GECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred ccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 233
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.+|+.+..+.+++++|+. .+.|..++.++..+.++..+...++. ++..+..|++.+.| +.+++..++..+
T Consensus 154 ~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdkl 224 (563)
T PRK06647 154 FATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQV 224 (563)
T ss_pred EecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 566777888899999986 57888888888888888888766654 34456667777665 566666665544
No 83
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.4e-11 Score=110.08 Aligned_cols=132 Identities=23% Similarity=0.315 Sum_probs=99.0
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++++.+|+|++|++.+...|...+.. ++.+..+||+||+|+||||+|+.+|+.+++
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 45678899999999999999999888842 234467899999999999999999986541
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 2335
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+|+.++.+.+++.+|+. .+.|+.++.++....+...++..++. ++..+..++..+.| +.+++.+++..+
T Consensus 155 ~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl 224 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQA 224 (486)
T ss_pred EECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 56677788888888985 68888999999999999998887764 33345566666554 345555555444
No 84
>PRK06893 DNA replication initiation factor; Validated
Probab=99.34 E-value=4.3e-11 Score=97.27 Aligned_cols=130 Identities=16% Similarity=0.094 Sum_probs=84.2
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
..++.+|+++++.++.. .+..... .+.. .....++||||||||||+|++++|+.+..
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~-------~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRK-------NFID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHH-------Hhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 45678999988655432 1111111 1111 11235899999999999999999974311
Q ss_pred ------------------------------------------------h-hccccCCCCCCc---HHHHhhcc--ccccc
Q psy15622 79 ------------------------------------------------V-HCGASNFPWNID---DAFLRRLE--KRIYV 104 (217)
Q Consensus 79 ------------------------------------------------~-~~~~t~~~~~l~---~~l~~rf~--~~i~~ 104 (217)
. +++++..|..++ +.+.+|+. ..+.+
T Consensus 79 ~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 79 QYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred hhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC
Confidence 1 123344455544 78888774 67789
Q ss_pred cCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 105 PLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 105 ~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
+.|+.+++.++++......++. ++..++.|++..+| +.+.+..++..
T Consensus 159 ~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 159 NDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 9999999999999888765554 44456778887764 45555555543
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.34 E-value=7.2e-11 Score=103.65 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=50.5
Q ss_pred CcHHHHhhccc--cccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHH
Q psy15622 90 IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 90 l~~~l~~rf~~--~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a 157 (217)
+++.+.+||.. .+.++.|+.++|..|++..++..++. ++..++.||+...+ +.+++..++......+
T Consensus 249 l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 249 LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 56788889964 68999999999999999999877654 44557778877764 5677776666554433
No 86
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.9e-11 Score=111.52 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=102.2
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....+|.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+||||+|+++|+.+.+
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 345678899999999999999999987752 345678999999999999999999985531
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence
Q ss_pred --hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 79 --VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 79 --~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.+|.+|+.++.+.+.+++|+ ..+.|+.++.++....++..+++.+.. ++..++.+++.+.| +.+++.+....+
T Consensus 162 ~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkl 237 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQA 237 (598)
T ss_pred CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 23356677778888888898 478899999999999999988776654 33445666776665 566666666544
No 87
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=8.3e-11 Score=104.62 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=109.2
Q ss_pred CCCCCCccc-chHH--HHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 14 PDVQWSDIA-NQVK--AKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 14 ~~~~~~dl~-g~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
+..+|++++ |..+ ....+.+....| +.....++||||+|||||+|++++++.+..
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 567888854 4332 344444433221 123356999999999999999999975421
Q ss_pred ------------------------------------------------------------hhccccCCCCC---CcHHHH
Q psy15622 79 ------------------------------------------------------------VHCGASNFPWN---IDDAFL 95 (217)
Q Consensus 79 ------------------------------------------------------------~~~~~t~~~~~---l~~~l~ 95 (217)
+++++...|.. +++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 22233344444 678888
Q ss_pred hhcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccc
Q psy15622 96 RRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQA 172 (217)
Q Consensus 96 ~rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~ 172 (217)
+||. ..+.+..|+.++|.+|++..++..++. ++..++.|++...| +.+++..++......+...
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------ 333 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------ 333 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------
Confidence 8996 478899999999999999999875543 44457777777665 5666666665544333221
Q ss_pred ccccccCCCccHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHhCC
Q psy15622 173 IPMAQLKRPVTKADFEMAIAKCR----KTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 173 ~~~~~~~~~vt~~df~~al~~~~----p~~~~~~i~~~~~~~~~~~~ 215 (217)
..++|.+.+.++++.+. ..++.++| ...+.+.||.
T Consensus 334 ------~~~it~~~~~~~l~~~~~~~~~~~~~~~i--~~~v~~~~~i 372 (450)
T PRK00149 334 ------GKPITLELAKEALKDLLAAQKKKITIENI--QKVVAEYYNI 372 (450)
T ss_pred ------CCCCCHHHHHHHHHHhhccCCCCCCHHHH--HHHHHHHcCC
Confidence 34577788888877652 23556666 3445555553
No 88
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.32 E-value=1.7e-11 Score=107.85 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=82.7
Q ss_pred ccCCCCCCCcccchHHHHHH---HHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 11 VERPDVQWSDIANQVKAKKL---LQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
..+.+.+++|++|++.+... |...+.. ....+++|+|||||||||+|+++++..+.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 45678899999999999666 7766642 12247999999999999999999974433
Q ss_pred --------------------------------------------------hhc-cccCC-CCCCcHHHHhhccccccccC
Q psy15622 79 --------------------------------------------------VHC-GASNF-PWNIDDAFLRRLEKRIYVPL 106 (217)
Q Consensus 79 --------------------------------------------------~~~-~~t~~-~~~l~~~l~~rf~~~i~~~~ 106 (217)
.++ ++|.. ...+++++++|+ ..+.++.
T Consensus 72 ~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ 150 (413)
T PRK13342 72 SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA-QVFELKP 150 (413)
T ss_pred ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc-eeeEeCC
Confidence 122 33333 457899999999 6788999
Q ss_pred CCHHHHHHHHHHHHhhC--CC-C-CcccHHHHHHHcc
Q psy15622 107 PSSSGRQELLRLILRQV--DL-A-SDLDLELVSDQLE 139 (217)
Q Consensus 107 p~~~~r~~il~~~l~~~--~~-~-~~~~~~~la~~~~ 139 (217)
++.++...+++..+... ++ . .+..+..+++.+.
T Consensus 151 ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~ 187 (413)
T PRK13342 151 LSEEDIEQLLKRALEDKERGLVELDDEALDALARLAN 187 (413)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCC
Confidence 99999999999887653 21 1 2223445555553
No 89
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.3e-11 Score=112.05 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=100.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
++.++.+.+|+||+|++.+++.|...+.. ++.+..+||+||+||||||+|+++|+.+.+
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 45788999999999999999999988852 234466899999999999999999986541
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
.+
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 33
Q ss_pred ccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 81 ~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
|.+|+.++.+.+.+++|+ ..+.|..++.++..+.+..+++..+.. ++..+..+++.+. -+.+++.+++...
T Consensus 152 IL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-GdlR~aln~Ldql 223 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSPRDTLSVLDQL 223 (584)
T ss_pred EEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 466788889999999996 578888888888888998888876653 3333445555444 3556666555544
No 90
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=1.6e-10 Score=102.34 Aligned_cols=180 Identities=16% Similarity=0.257 Sum_probs=112.7
Q ss_pred CCCCCCCccc-chHHH--HHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 13 RPDVQWSDIA-NQVKA--KKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 13 ~~~~~~~dl~-g~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
.|..+|++++ |..+. ...+++....+.. ..+.+...++||||+|+|||+|++++++.+..
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667888865 53333 2334433321110 00112357999999999999999999974421
Q ss_pred ----------------------------------------------------------hhccccCC-CC---CCcHHHHh
Q psy15622 79 ----------------------------------------------------------VHCGASNF-PW---NIDDAFLR 96 (217)
Q Consensus 79 ----------------------------------------------------------~~~~~t~~-~~---~l~~~l~~ 96 (217)
.++.+++. |. .+++.+.+
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S 258 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS 258 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh
Confidence 12244443 43 46788899
Q ss_pred hcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccc
Q psy15622 97 RLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAI 173 (217)
Q Consensus 97 rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 173 (217)
||. ..+.++.|+.++|..+++...+..++. ++..++.+++...+ +.+++...+...+.......+.
T Consensus 259 R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~---------- 327 (445)
T PRK12422 259 RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS---------- 327 (445)
T ss_pred hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh----------
Confidence 996 677888899999999999998877654 44446667776653 4555655555443222222211
Q ss_pred cccccCCCccHHHHHHHHHhcC---C--CCCHHHHHHHHHHHHHhCCC
Q psy15622 174 PMAQLKRPVTKADFEMAIAKCR---K--TVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 174 ~~~~~~~~vt~~df~~al~~~~---p--~~~~~~i~~~~~~~~~~~~~ 216 (217)
..++|.+++.++++.+. + .++.++|. +.|.+.||.+
T Consensus 328 -----~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~--~~Va~~~~v~ 368 (445)
T PRK12422 328 -----HQLLYVDDIKALLHDVLEAAESVRLTPSKII--RAVAQYYGVS 368 (445)
T ss_pred -----CCCCCHHHHHHHHHHhhhcccCCCCCHHHHH--HHHHHHhCCC
Confidence 34688999999988652 2 35667665 5677777754
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.4e-11 Score=115.88 Aligned_cols=131 Identities=21% Similarity=0.144 Sum_probs=98.8
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..+|.+.+|++|+|++.+++.|...+.. ++.+..+||+||+||||||+|++||+.+.+
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 45789999999999999999999988752 234467899999999999999999987741
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
++
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 34
Q ss_pred ccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 81 ~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
|.+|+.++.|.+.+++|+ ..+.|..++.++..+++...++..++. .+..+..+++.+.| +.+++.+++..
T Consensus 154 Il~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred EEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 466778888888999898 567888888888888888888776654 22334556666554 45555544443
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.30 E-value=4.4e-11 Score=101.47 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=81.7
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+++|++|.+++++.+...+.. ++.+..++|+||+|+|||++++++++.++.
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~ 79 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC 79 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc
Confidence 45788999999999999999999988841 223466777999999999999999874321
Q ss_pred -----------------------------------------------------hhccccCCCCCCcHHHHhhcccccccc
Q psy15622 79 -----------------------------------------------------VHCGASNFPWNIDDAFLRRLEKRIYVP 105 (217)
Q Consensus 79 -----------------------------------------------------~~~~~t~~~~~l~~~l~~rf~~~i~~~ 105 (217)
.++.++|.+..+.+++++||. .+.++
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~ 158 (316)
T PHA02544 80 RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR-VIDFG 158 (316)
T ss_pred cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce-EEEeC
Confidence 344788888899999999995 67889
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy15622 106 LPSSSGRQELLRLILRQ 122 (217)
Q Consensus 106 ~p~~~~r~~il~~~l~~ 122 (217)
.|+.+++.++++.++..
T Consensus 159 ~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 159 VPTKEEQIEMMKQMIVR 175 (316)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999998887765443
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.3e-11 Score=109.61 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=94.4
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+..++.+.+|+||+|++.+++.|...+.. ++-+..+||+||+|+||||+|+++|+.+.+
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 456688999999999999999999988852 122467999999999999999999986642
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.+|
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifI 153 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFV 153 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEE
Confidence 344
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccC
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG 140 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g 140 (217)
.+|+.+..+.+.+++|+. .+.|+.++.++..++++..+...++. ++..+..+++.+.|
T Consensus 154 LaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 154 LATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred EecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888888888999984 67899999999998998888776643 33345566665553
No 94
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.5e-11 Score=102.61 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=96.1
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
..++.+.+|+|++|++.+++.+...+.. ++.+..++||||+|+|||++++++++.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4578899999999999999999988853 234578999999999999999999986521
Q ss_pred ---------------------------------------------------------------hhccccCCCCCCcHHHH
Q psy15622 79 ---------------------------------------------------------------VHCGASNFPWNIDDAFL 95 (217)
Q Consensus 79 ---------------------------------------------------------------~~~~~t~~~~~l~~~l~ 95 (217)
.++.+++.+..+.+++.
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 23356677788888998
Q ss_pred hhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHH
Q psy15622 96 RRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVC 150 (217)
Q Consensus 96 ~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~ 150 (217)
+|+. .+.++.|+.++...++...+.+.++. ++..++.++..+.| +.+.+.+.+
T Consensus 157 sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~l 210 (367)
T PRK14970 157 SRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIF 210 (367)
T ss_pred hcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 8885 57899999999998998888777653 34455666665443 334443333
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.29 E-value=2.4e-10 Score=92.62 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=99.8
Q ss_pred ccCCCCCCCccc--chHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 11 VERPDVQWSDIA--NQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~--g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+|++++ +...+...+++... ...+...++|+||+|||||++|+++++....
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 445668899976 34555666665443 1123468999999999999999999875410
Q ss_pred ---------------------------------------------hhccccCCCC---CCcHHHHhhc--cccccccCCC
Q psy15622 79 ---------------------------------------------VHCGASNFPW---NIDDAFLRRL--EKRIYVPLPS 108 (217)
Q Consensus 79 ---------------------------------------------~~~~~t~~~~---~l~~~l~~rf--~~~i~~~~p~ 108 (217)
.++.+++.+. .+.+.+.+|| ...+.+|.|+
T Consensus 79 ~~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~ 158 (227)
T PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLS 158 (227)
T ss_pred HHhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCC
Confidence 1223333221 3567788788 4688999999
Q ss_pred HHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHH
Q psy15622 109 SSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADF 187 (217)
Q Consensus 109 ~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df 187 (217)
..++..++..+....++. ++..++.|++..+| +..++..+++.-...+... ..+||...+
T Consensus 159 ~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~------------------~~~i~~~~~ 219 (227)
T PRK08903 159 DADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ------------------KRPVTLPLL 219 (227)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh------------------CCCCCHHHH
Confidence 988888988887766554 33446667775444 5666666666533222222 457898888
Q ss_pred HHHHH
Q psy15622 188 EMAIA 192 (217)
Q Consensus 188 ~~al~ 192 (217)
.+++.
T Consensus 220 ~~~l~ 224 (227)
T PRK08903 220 REMLA 224 (227)
T ss_pred HHHHh
Confidence 88875
No 96
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.29 E-value=6.4e-11 Score=100.29 Aligned_cols=119 Identities=24% Similarity=0.223 Sum_probs=88.6
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|+|++|.+++++.+...+.. +.. ..++|+||+|||||++++++++.+..
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 56788899999999999999999988742 111 35899999999999999999875310
Q ss_pred -----------------------------------------------------------hhccccCCCCCCcHHHHhhcc
Q psy15622 79 -----------------------------------------------------------VHCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 79 -----------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~ 99 (217)
.++.+++.+..+.+.+.+|+.
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 75 NASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred ccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 122455566666677777875
Q ss_pred ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccC
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG 140 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g 140 (217)
.+.|+.++.++...+++..+++.++. ++..++.+++.+.|
T Consensus 155 -~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 155 -VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred -eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 57888899999999999988877653 34456666666543
No 97
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.8e-11 Score=107.30 Aligned_cols=165 Identities=38% Similarity=0.537 Sum_probs=135.8
Q ss_pred hcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHH------hch--------------------------------
Q psy15622 38 PLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIV------YNQ-------------------------------- 78 (217)
Q Consensus 38 ~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~------~~~-------------------------------- 78 (217)
|+..+..++... .++++++++||+|+|||+++++++.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 556677777666 77899999999999999999998875 100
Q ss_pred -------------------------------------hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHH
Q psy15622 79 -------------------------------------VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLI 119 (217)
Q Consensus 79 -------------------------------------~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~ 119 (217)
.+++.+|.+..+++++.+ ||+..+.++.|+...+.+++...
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 162 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIH 162 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHH
Confidence 011278999999999999 99999999999999999999999
Q ss_pred HhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC----
Q psy15622 120 LRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR---- 195 (217)
Q Consensus 120 l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~---- 195 (217)
...+....+.+...++..+.|+++.++..++..+...+.++.+. .......++.+||.++++++.
T Consensus 163 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (494)
T COG0464 163 TRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-----------LVGEYIGVTEDDFEEALKKVLPSRG 231 (494)
T ss_pred HhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-----------cCcccccccHHHHHHHHHhcCcccc
Confidence 98888777889999999999999999999999999999888640 112245699999999999974
Q ss_pred -----CCCCHHHHHHHHHHHHHh
Q psy15622 196 -----KTVTAADIRQFEEWNEKF 213 (217)
Q Consensus 196 -----p~~~~~~i~~~~~~~~~~ 213 (217)
|.++|+|+.++++.+..+
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l 254 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEEL 254 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHH
Confidence 468999998777766654
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.29 E-value=3.3e-11 Score=102.88 Aligned_cols=128 Identities=21% Similarity=0.200 Sum_probs=90.9
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+++++.|...+.. +.. .+++|+||||||||++|+++++.+..
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDS-----------PNL-PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhC-----------CCC-ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 45678899999999999999999987752 111 36999999999999999998774310
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence
Q ss_pred ----hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 79 ----VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 79 ----~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.++.+++.+..+.+.+.+|+ ..+.++.|+.++...+++..+.+.++. ++..++.++..+ ++|+..+....
T Consensus 153 ~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l 227 (337)
T PRK12402 153 SRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTL 227 (337)
T ss_pred cCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHH
Confidence 12244445555666666676 457788889999999999988876654 334455666655 45666555433
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=6.6e-11 Score=103.64 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=49.4
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
....++.+.+|++++|++.+++.|+..+.. ++.+..+||+||+|+||||+|+++|+.+
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 456688999999999999999999887752 2345779999999999999999999866
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=7.9e-11 Score=104.57 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=96.5
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+.+|+|++|++.+++.|...+.. ++.+..+||+||+|+|||++|+++|+.+..
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 34567889999999999999999988852 234577999999999999999999985421
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
.++
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 233
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
.+|+.+..+.+.+.+|+. .+.|+.++.++..+.+...+++.+.. +...+..|+..+.| +.+++.+.+.
T Consensus 156 l~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 667778888899999985 67888899998888888888776643 33345566666554 3344444333
No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.28 E-value=2.2e-10 Score=92.45 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=89.0
Q ss_pred CCCCCCCccc--chHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 13 RPDVQWSDIA--NQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 13 ~~~~~~~dl~--g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
.+..+|++++ +.....+.+++.+. ...+..++|+||+|||||++|+++++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3456777876 35566777776653 123478999999999999999999864320
Q ss_pred ------------------------------------------------hhccccC-CCCCC--c-HHHHhhcc--ccccc
Q psy15622 79 ------------------------------------------------VHCGASN-FPWNI--D-DAFLRRLE--KRIYV 104 (217)
Q Consensus 79 ------------------------------------------------~~~~~t~-~~~~l--~-~~l~~rf~--~~i~~ 104 (217)
.++.+++ .+..+ . +.+.+|+. ..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l 156 (226)
T TIGR03420 77 LAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156 (226)
T ss_pred HHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEec
Confidence 1223333 33332 2 67777874 67899
Q ss_pred cCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHH
Q psy15622 105 PLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 105 ~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a 157 (217)
|.|+.+++..+++.+..+.++. ++..+..|++..+ -+.+++.+++..+...+
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRAS 209 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 9999999999999887765543 3334566777533 46788888877765433
No 102
>PRK06620 hypothetical protein; Validated
Probab=99.28 E-value=2e-10 Score=92.37 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=86.2
Q ss_pred ccCCCCCCCcccchH---HHHHHHHHHHHhhcCChhhhhhhcCC-CceEEEecCCCCcHHHHHHHHHHHhch--------
Q psy15622 11 VERPDVQWSDIANQV---KAKKLLQEAVILPLEKPSYFQHIRKP-WKGVLMVGPPGTGKTMLAKAVAIVYNQ-------- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~---~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~Gp~G~GKTtla~aia~~~~~-------- 78 (217)
...++.+|++++--+ .....+++....+ ...| ...++||||+|||||+|++++++..+.
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~ 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFF 78 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhh
Confidence 456778899965433 3344444433210 0113 267999999999999999999863321
Q ss_pred -------------------------------------hhccccCCCCC--CcHHHHhhccc--cccccCCCHHHHHHHHH
Q psy15622 79 -------------------------------------VHCGASNFPWN--IDDAFLRRLEK--RIYVPLPSSSGRQELLR 117 (217)
Q Consensus 79 -------------------------------------~~~~~t~~~~~--l~~~l~~rf~~--~i~~~~p~~~~r~~il~ 117 (217)
++++++..|.. + +++++|+.. ++.+..|+.+.+..+++
T Consensus 79 ~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 79 NEEILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred chhHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 23344444443 5 788889963 57899999999999999
Q ss_pred HHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 118 LILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 118 ~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
......++. ++..++.|++..++ +.+.+..++..
T Consensus 158 k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 158 KHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 888766553 44557778887764 55666655554
No 103
>PRK08727 hypothetical protein; Validated
Probab=99.27 E-value=3.2e-10 Score=92.45 Aligned_cols=152 Identities=21% Similarity=0.204 Sum_probs=94.3
Q ss_pred cCCCCCCCcccc-hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIAN-QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..+..+|+++++ ..+....+..... +.....++|+||+|||||+|+++++..+..
T Consensus 12 ~~~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 456678988654 4433333332221 122356999999999999999999763221
Q ss_pred ------------------------------------------------hhccccC-CCCCC---cHHHHhhc--cccccc
Q psy15622 79 ------------------------------------------------VHCGASN-FPWNI---DDAFLRRL--EKRIYV 104 (217)
Q Consensus 79 ------------------------------------------------~~~~~t~-~~~~l---~~~l~~rf--~~~i~~ 104 (217)
.++.|++ .|..+ ++.+.+|| ...+.+
T Consensus 80 ~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l 159 (233)
T PRK08727 80 AAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGL 159 (233)
T ss_pred hhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEe
Confidence 1334444 45544 68999998 456789
Q ss_pred cCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCcc
Q psy15622 105 PLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVT 183 (217)
Q Consensus 105 ~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt 183 (217)
+.|+.+++.++++......++. ++..++.|++.++| +.+.+.+++......+... ..++|
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~------------------~~~it 220 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA------------------KRRVT 220 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh------------------CCCCC
Confidence 9999999999999866554543 44456677777663 2223333343332222211 23588
Q ss_pred HHHHHHHHHhc
Q psy15622 184 KADFEMAIAKC 194 (217)
Q Consensus 184 ~~df~~al~~~ 194 (217)
...+.+.+..-
T Consensus 221 ~~~~~~~l~~~ 231 (233)
T PRK08727 221 VPFLRRVLEEG 231 (233)
T ss_pred HHHHHHHHhhc
Confidence 88888877653
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=7.7e-11 Score=107.89 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=94.7
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....++.+.+|+||+|++.+++.|...+.. ++.+..+||+||+|+|||++|+++|+.+.+
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~ 73 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP 73 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456789999999999999999999887752 123466899999999999999999986531
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
++
T Consensus 74 c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~ 153 (585)
T PRK14950 74 CGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIF 153 (585)
T ss_pred CccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEE
Confidence 23
Q ss_pred ccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 81 ~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
|.+++..+.+.+.+.+|+. .+.|+.++..+...++...+...++. ++..+..++..+.| +.+++.+.+.
T Consensus 154 Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~Le 223 (585)
T PRK14950 154 ILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQ 223 (585)
T ss_pred EEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3455666667777777774 56788888888888888887766543 33335566666654 5555554444
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=4.4e-11 Score=104.29 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------------
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------ 78 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------ 78 (217)
.|++|+|++.+++.|+..+.........+ ..+.+.++||+||+|+|||++|+++|..+.+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 58999999999999999998654322211 1124578999999999999999999874421
Q ss_pred --------------------------------------------------------------------hhccccCCCCCC
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPWNI 90 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~~l 90 (217)
+++.+|++++.+
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHC
Confidence 333666669999
Q ss_pred cHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHH
Q psy15622 91 DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIV 147 (217)
Q Consensus 91 ~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~ 147 (217)
.+.+++|+ ..+.|+.|+.++..+.+.. ..+.. ......++..+.|..+..+.
T Consensus 161 lpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 161 LPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 99999998 5888999998887666652 32433 23455677788886664443
No 106
>PRK09087 hypothetical protein; Validated
Probab=99.24 E-value=2.3e-10 Score=92.78 Aligned_cols=151 Identities=18% Similarity=0.182 Sum_probs=96.3
Q ss_pred cCCCCCCCcccc---hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 12 ERPDVQWSDIAN---QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
..++.+|++++. +..+...+.+. + ..+...++|+||+|||||+|+++++...+.
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~~l~~~---~----------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVSLVDHW---P----------NWPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred CCCCCChhceeecCchHHHHHHHHhc---c----------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 456678999774 23333433221 1 012245999999999999999999842211
Q ss_pred ---------------------------------------hhccccCCCC--C-CcHHHHhhcc--ccccccCCCHHHHHH
Q psy15622 79 ---------------------------------------VHCGASNFPW--N-IDDAFLRRLE--KRIYVPLPSSSGRQE 114 (217)
Q Consensus 79 ---------------------------------------~~~~~t~~~~--~-l~~~l~~rf~--~~i~~~~p~~~~r~~ 114 (217)
++++++..|. . ..+.+++|+. ..+.+..|+.+.+.+
T Consensus 81 ~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 81 DAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred HHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 2223333333 2 3678888985 678899999999999
Q ss_pred HHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHh
Q psy15622 115 LLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAK 193 (217)
Q Consensus 115 il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~ 193 (217)
+++..++..++. ++..++.|++..++ +.+.+..++......+... ..++|...++++++.
T Consensus 161 iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------------~~~it~~~~~~~l~~ 221 (226)
T PRK09087 161 VIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------------KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHHh
Confidence 999999887664 44557778887763 3344443333332222221 356888888888876
Q ss_pred c
Q psy15622 194 C 194 (217)
Q Consensus 194 ~ 194 (217)
+
T Consensus 222 ~ 222 (226)
T PRK09087 222 M 222 (226)
T ss_pred h
Confidence 4
No 107
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.7e-10 Score=104.54 Aligned_cols=95 Identities=23% Similarity=0.255 Sum_probs=78.2
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
.|-.|++++|+++.+++.-....+.. -+.-++|+||||+|||+|+++||+.++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKL------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccC------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 45789999999999998642222111 1234888999999999999999987665
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
.|++|+|..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 567999999
Q ss_pred CCCcHHHHhhccccccccCCCHHHHHHHHHHHH
Q psy15622 88 WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 120 (217)
Q Consensus 88 ~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l 120 (217)
+.|+..++.|. .+|.++--+.++..+|.+.+|
T Consensus 477 ~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 477 DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999998 588889899999999998876
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.20 E-value=1.7e-10 Score=107.36 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=74.7
Q ss_pred ccccCCCCCCCcccchHHHHH---HHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 9 IIVERPDVQWSDIANQVKAKK---LLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
...++.+.+++|++|++.+.. .|++.+.. ....+++|+|||||||||+|+++++.++.
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 344677899999999999874 45555531 11247999999999999999999874422
Q ss_pred -----------------------------------------------------hhc-cccCCC-CCCcHHHHhhcccccc
Q psy15622 79 -----------------------------------------------------VHC-GASNFP-WNIDDAFLRRLEKRIY 103 (217)
Q Consensus 79 -----------------------------------------------------~~~-~~t~~~-~~l~~~l~~rf~~~i~ 103 (217)
.++ ++|..+ ..+++++++|+ ..+.
T Consensus 86 ~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~-~v~~ 164 (725)
T PRK13341 86 VLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRS-RLFR 164 (725)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccc-ccee
Confidence 122 334333 46889999986 5688
Q ss_pred ccCCCHHHHHHHHHHHHh
Q psy15622 104 VPLPSSSGRQELLRLILR 121 (217)
Q Consensus 104 ~~~p~~~~r~~il~~~l~ 121 (217)
|+.++.++...+++..+.
T Consensus 165 l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 165 LKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999999999887
No 109
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1.1e-09 Score=99.37 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=48.0
Q ss_pred CCcHHHHhhcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 89 NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 89 ~l~~~l~~rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
.+++.+.+||. ..+.+..|+.+.|..|++......++. ++.-+..|++..++ +..+++.++...
T Consensus 426 ~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 57889999995 455888899999999999998877765 44456677777664 566776665544
No 110
>KOG2028|consensus
Probab=99.19 E-value=1.5e-10 Score=98.01 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=91.3
Q ss_pred cCCCCCCCcccchHHHHHH---HHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 12 ERPDVQWSDIANQVKAKKL---LQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
.-.+.+++|.+|++.+..+ |+..++. ++ -.+++|+||||||||||||.|+.-..-
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq-----------~~-ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-----------NR-IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHc-----------CC-CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 4457788899998877443 2322221 11 147999999999999999999961111
Q ss_pred ------------------------------------------------------hhccccCCCC-CCcHHHHhhcccccc
Q psy15622 79 ------------------------------------------------------VHCGASNFPW-NIDDAFLRRLEKRIY 103 (217)
Q Consensus 79 ------------------------------------------------------~~~~~t~~~~-~l~~~l~~rf~~~i~ 103 (217)
++++||.+|. -++.++++|+...+.
T Consensus 199 t~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvL 278 (554)
T KOG2028|consen 199 TNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVL 278 (554)
T ss_pred cccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEe
Confidence 3447776666 789999999965444
Q ss_pred ccCCCHHHHHHHHHHHHhhCC--------CCC-c-----ccHHHHHHHccCCCHHhHHHHHH---HHHHHHHHHHHhCCC
Q psy15622 104 VPLPSSSGRQELLRLILRQVD--------LAS-D-----LDLELVSDQLEGYSASDIVVVCR---DAAFMAMRAAIRGKS 166 (217)
Q Consensus 104 ~~~p~~~~r~~il~~~l~~~~--------~~~-~-----~~~~~la~~~~g~s~~di~~l~~---~a~~~a~~~~~~~~~ 166 (217)
.....+....|+...+.-++ +.. . --++.++..++| |-....+ .+..+...|.
T Consensus 279 -ekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~----- 348 (554)
T KOG2028|consen 279 -EKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAALNALEMSLSMFCTRS----- 348 (554)
T ss_pred -ccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhc-----
Confidence 44455667777766443221 111 1 124455655554 4433222 2211222221
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
.+ ....+++.+|+.++|..-.
T Consensus 349 -g~-------~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 349 -GQ-------SSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred -CC-------cccceecHHHHHHHHhhcc
Confidence 11 1256799999999988754
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.5e-10 Score=102.03 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=99.6
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
..++.+.+|+||+|++.+++.|...+.. ++.+..+|||||+|+|||++|+++|+.+.+
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4578889999999999999999988852 234577999999999999999999997641
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.+|.
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3446
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
+|+....+-+.+++|+ ..+.|+.++.++....++..+...++. +...+..|++.+.| +.+++.+....
T Consensus 157 ~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lek 225 (614)
T PRK14971 157 ATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQ 225 (614)
T ss_pred EeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 6777788999999998 458888899999888999888877765 22346667777654 45555544443
No 112
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.18 E-value=2.8e-10 Score=106.97 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=109.2
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------------------
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------------- 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------------------- 78 (217)
++.|++++|+.+.+++....... ...+..++|+||||||||++++++|+.++.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 48999999999998886432211 123456999999999999999999985544
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.+++|+|..
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~- 475 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM- 475 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-
Confidence 345788776
Q ss_pred CCcHHHHhhccccccccCCCHHHHHHHHHHHHh-----hCCCC------CcccHHHHHHH-ccCCCHHhHHHHHHHHHHH
Q psy15622 89 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-----QVDLA------SDLDLELVSDQ-LEGYSASDIVVVCRDAAFM 156 (217)
Q Consensus 89 ~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~-----~~~~~------~~~~~~~la~~-~~g~s~~di~~l~~~a~~~ 156 (217)
.+++++++|+. .+.++.++.++..+|++.++. +.++. ++..+..+++. +..+-.+.+++++...+..
T Consensus 476 ~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~ 554 (784)
T PRK10787 476 NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRK 554 (784)
T ss_pred CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHH
Confidence 59999999995 788888999999999988873 12222 11224445542 2445567788777776666
Q ss_pred HHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhc
Q psy15622 157 AMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKC 194 (217)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 194 (217)
++.+.+.+... .+..++.+++.+.+..-
T Consensus 555 ~l~~~~~~~~~----------~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 555 AVKQLLLDKSL----------KHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHhcCCC----------ceeeecHHHHHHHhCCC
Confidence 66665432211 13568889988887753
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=9.4e-10 Score=100.76 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=90.3
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++++.+|++++|++.+++.|+..+.. ++-+.++||+||+||||||+|+++|+.+.+
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 45678999999999999999999887742 234577999999999999999999986632
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP 154 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP 154 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC
Confidence
Q ss_pred ----hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHH
Q psy15622 79 ----VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVV 149 (217)
Q Consensus 79 ----~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l 149 (217)
.+|.+|+.+..+.+.+.+|+ ..+.|..++.++....+...+...+.. ++..++.++..+.| +.+++.+.
T Consensus 155 p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~e 228 (620)
T PRK14954 155 PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSI 228 (620)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHH
Confidence 22244556667777777776 467777788877777777777665542 33345556666554 33444333
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.17 E-value=3e-10 Score=106.18 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=74.8
Q ss_pred hccccCCCC-----CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHH-----HHHHHc-----cCCCHH
Q psy15622 80 HCGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE-----LVSDQL-----EGYSAS 144 (217)
Q Consensus 80 ~~~~t~~~~-----~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~-----~la~~~-----~g~s~~ 144 (217)
++++|+.++ ..|+++.|||+ .+.++.|+.+++.+|++.+..++....++.+. ..+..+ ..+-+.
T Consensus 318 vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred EEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 336666543 57999999996 79999999999999999988776554444332 222323 234455
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC--C--CCCHHHHHHHHHHHHHh
Q psy15622 145 DIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR--K--TVTAADIRQFEEWNEKF 213 (217)
Q Consensus 145 di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~--p--~~~~~~i~~~~~~~~~~ 213 (217)
....++.+|+..+.- .. . ......|+.+|+.+.+.... | ....++...+....++.
T Consensus 397 Kaidlldea~a~~~~--~~-~----------~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L 456 (758)
T PRK11034 397 KAIDVIDEAGARARL--MP-V----------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_pred HHHHHHHHHHHhhcc--Cc-c----------cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHh
Confidence 677777777643210 00 0 00123588899999888775 2 23445555555554443
No 115
>KOG2004|consensus
Probab=99.17 E-value=8.7e-11 Score=106.30 Aligned_cols=135 Identities=22% Similarity=0.298 Sum_probs=98.8
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------- 78 (217)
+|-.|++++|+++.+++.- .+.-+ ..++-++|+||||+|||+++++||..++.
T Consensus 411 eDHYgm~dVKeRILEfiAV-------~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAV-------GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHH-------HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5679999999999999953 11111 23456899999999999999999987766
Q ss_pred ------------------------------------------------------------------------hhccccCC
Q psy15622 79 ------------------------------------------------------------------------VHCGASNF 86 (217)
Q Consensus 79 ------------------------------------------------------------------------~~~~~t~~ 86 (217)
.+|+|+|.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~ 563 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV 563 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc
Confidence 57799999
Q ss_pred CCCCcHHHHhhccccccccCCCHHHHHHHHHHHH-----hhCCCCCc-cc-----H-HHHHHHcc--CCC--HHhHHHHH
Q psy15622 87 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL-----RQVDLASD-LD-----L-ELVSDQLE--GYS--ASDIVVVC 150 (217)
Q Consensus 87 ~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l-----~~~~~~~~-~~-----~-~~la~~~~--g~s--~~di~~l~ 150 (217)
.+.|++.++.|. ..|.++--..++...|.+.+| ...++.++ ++ + .-+.+.|. |.- ...|..+|
T Consensus 564 idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 564 IDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred cccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999998 478888888999999998887 33455422 22 2 22333332 211 25678888
Q ss_pred HHHHHHHHHHH
Q psy15622 151 RDAAFMAMRAA 161 (217)
Q Consensus 151 ~~a~~~a~~~~ 161 (217)
+.+++..++..
T Consensus 643 Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 643 RKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHhh
Confidence 88887776665
No 116
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.5e-09 Score=98.31 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=92.9
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
..++.+..|++++|++.++..|...+.. ++-+.++||+||+|+|||++|+++|+.+.+
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4577889999999999999999988853 122357999999999999999999986532
Q ss_pred -----------------------------------------------------------------------------hhc
Q psy15622 79 -----------------------------------------------------------------------------VHC 81 (217)
Q Consensus 79 -----------------------------------------------------------------------------~~~ 81 (217)
+++
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfI 155 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFV 155 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEE
Confidence 334
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVC 150 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~ 150 (217)
.+|+.+..+-+.+++|+ ..+.|+.++.++....+.....+.+.. ....+..+++.+.| +.+++.++.
T Consensus 156 L~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lL 223 (620)
T PRK14948 156 LATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLL 223 (620)
T ss_pred EEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 66777888888888888 456777788888777777777665543 22335566666654 234444333
No 117
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=9.6e-10 Score=88.27 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=89.1
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
+..++.+.+.+|+|.+.+++.|.+....+.. +.|...|||+|..|+|||++++|+-..+.-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 4456678999999999999999988865442 356789999999999999999999875543
Q ss_pred -----------------------------------------------------hhccccCCCCCCcHH------------
Q psy15622 79 -----------------------------------------------------VHCGASNFPWNIDDA------------ 93 (217)
Q Consensus 79 -----------------------------------------------------~~~~~t~~~~~l~~~------------ 93 (217)
++.+|+|+-+.+++.
T Consensus 123 dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih 202 (287)
T COG2607 123 DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIH 202 (287)
T ss_pred HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccC
Confidence 444888887776532
Q ss_pred ----------HHhhccccccccCCCHHHHHHHHHHHHhhCCCCC
Q psy15622 94 ----------FLRRLEKRIYVPLPSSSGRQELLRLILRQVDLAS 127 (217)
Q Consensus 94 ----------l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~ 127 (217)
+-.||...+.|+.++.++..++++.+.++.+++-
T Consensus 203 ~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 203 PSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred hhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 2229999999999999999999999999998863
No 118
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=1.7e-09 Score=93.44 Aligned_cols=156 Identities=24% Similarity=0.189 Sum_probs=99.6
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc---------h------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN---------Q------ 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~---------~------ 78 (217)
++.-.++++|.++..+.|...+..... +..+..++|+||||||||++++++++.+. .
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 344446899999999999988853221 12336799999999999999999975321 0
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~ 161 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL 161 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC
Confidence
Q ss_pred -----hhccccCCCC---CCcHHHHhhcc-ccccccCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHc---cCCCH
Q psy15622 79 -----VHCGASNFPW---NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQL---EGYSA 143 (217)
Q Consensus 79 -----~~~~~t~~~~---~l~~~l~~rf~-~~i~~~~p~~~~r~~il~~~l~~~---~~~~~~~~~~la~~~---~g~s~ 143 (217)
.+++++|.++ .+++.+.+||. ..+.|++++.++..++++..++.. +.-.+..+..++... .|. .
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~ 240 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-A 240 (365)
T ss_pred CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-H
Confidence 1225555554 46677777885 568999999999999999887631 111222233333333 332 3
Q ss_pred HhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 144 SDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 144 ~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
+.+..++..|...|..+. ...||.+|+..|++.+.
T Consensus 241 R~al~~l~~a~~~a~~~~-----------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREG-----------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHH
Confidence 334456666666554432 23477888877766654
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=99.11 E-value=3.2e-09 Score=86.56 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=79.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch-----------------------------------------------------
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ----------------------------------------------------- 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~----------------------------------------------------- 78 (217)
...++|+||+|+|||+|++++++.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 367999999999999999999863220
Q ss_pred --------hhccccCCCCC---CcHHHHhhcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHH
Q psy15622 79 --------VHCGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSAS 144 (217)
Q Consensus 79 --------~~~~~t~~~~~---l~~~l~~rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~ 144 (217)
.+++++..|.. ..+.+.+||. ..+.+..|+.+++.++++......++. ++..++.|++..++ +.+
T Consensus 125 ~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r 203 (234)
T PRK05642 125 RLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMS 203 (234)
T ss_pred HHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHH
Confidence 22244433432 3688999995 556778899999999999655554543 44456677777664 556
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHH
Q psy15622 145 DIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIA 192 (217)
Q Consensus 145 di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~ 192 (217)
.+..++..-...++.. ..++|..-++++|.
T Consensus 204 ~l~~~l~~l~~~~l~~------------------~~~it~~~~~~~L~ 233 (234)
T PRK05642 204 ALFDLLERLDQASLQA------------------QRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHHc------------------CCcCCHHHHHHHhc
Confidence 6665554433222221 34577777776653
No 120
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.11 E-value=2.8e-09 Score=94.50 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=44.3
Q ss_pred CcHHHHhhcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 90 IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 90 l~~~l~~rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+.+.+.+||. ..+.+..|+.+.|..|++...+..++. ++..++.|++...| +.++++.++...
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 3456777885 456789999999999999998765443 34446777777765 566666666544
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.10 E-value=2.3e-09 Score=98.65 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=63.8
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAA 161 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~ 161 (217)
||+.+..+++++++||. .+.++..+.++...|++..+...+.. ++..++.|++.+ +.++...++...+...+..+.
T Consensus 330 Tt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~ 406 (615)
T TIGR02903 330 TTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRA 406 (615)
T ss_pred ccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999986 45778889999999999998876542 222334444443 234444455555544443332
Q ss_pred H-hCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 162 I-RGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
. .. +......|+.+|+.++++.-+
T Consensus 407 ~~~~----------~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 407 AEAG----------KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHhc----------cCCCCeeECHHHHHHHhCCCc
Confidence 1 00 011235799999999998765
No 122
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.09 E-value=7.9e-11 Score=86.67 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=22.9
Q ss_pred hhccccCCCCCCcHHHH-hhccccccccC
Q psy15622 79 VHCGASNFPWNIDDAFL-RRLEKRIYVPL 106 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~-~rf~~~i~~~~ 106 (217)
.++++||.++.+++.++ +||+..+++|+
T Consensus 104 ~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 104 IVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp EEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred eeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 45588999999999999 89999988874
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.07 E-value=2.9e-09 Score=92.98 Aligned_cols=156 Identities=25% Similarity=0.263 Sum_probs=102.7
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc-----h----------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN-----Q---------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~-----~---------- 78 (217)
|....+.++|-++..+.|...+..... +..+..++|+||||+|||++++.+++.+. .
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 344557799999999998888753221 12235699999999999999999986431 0
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
.+
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~v 176 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEE
Confidence 13
Q ss_pred ccccCCCC---CCcHHHHhhcc-ccccccCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHccCCCHHhH---HHHH
Q psy15622 81 CGASNFPW---NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGYSASDI---VVVC 150 (217)
Q Consensus 81 ~~~t~~~~---~l~~~l~~rf~-~~i~~~~p~~~~r~~il~~~l~~~---~~~~~~~~~~la~~~~g~s~~di---~~l~ 150 (217)
++++|... .+++.+.+||. ..+.|+.++.++..++++..++.. +..++..++.+++.+.+. .+|+ ..++
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~-~Gd~r~a~~ll 255 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE-HGDARVAIDLL 255 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 35555432 46677777774 568899999999999999887542 111333356666666443 2344 3555
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 151 RDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 151 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
..|...|..+. ...|+.+|+..|++.+.
T Consensus 256 ~~a~~~a~~~~-----------------~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 256 RRAGLIAEREG-----------------SRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHH
Confidence 55555554332 34588899988888764
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.06 E-value=2.4e-09 Score=101.69 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=84.8
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
..+-++++++|.+..+..+.+.+.- +...+++|+||||||||++++.+|+.+..
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 3456778888888876655554421 22357999999999999999999975421
Q ss_pred ---------------------------------------------------------------------hhccccCC---
Q psy15622 79 ---------------------------------------------------------------------VHCGASNF--- 86 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~--- 86 (217)
.+|++|+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 22255543
Q ss_pred --CCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCC----C-CcccHHHHHHHccCCCH
Q psy15622 87 --PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL----A-SDLDLELVSDQLEGYSA 143 (217)
Q Consensus 87 --~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~----~-~~~~~~~la~~~~g~s~ 143 (217)
...+|+++.|||. .|.++.|+.++..+|++.+...+.. . .+..+..++..+.+|.+
T Consensus 329 ~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 329 KKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred hhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 3458999999996 7999999999999998877765432 1 34556777787776654
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.03 E-value=5.4e-09 Score=92.87 Aligned_cols=108 Identities=11% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCcHHHHhhcc--ccccccCCCHHHHHHHHHHHHhhCCC---CCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 89 NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDL---ASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 89 ~l~~~l~~rf~--~~i~~~~p~~~~r~~il~~~l~~~~~---~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
.+++.+.+||. ..+.+..|+.++|.++++..++..++ -++..++.|++.+.| +.+.+..++..+...+....
T Consensus 255 ~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~-- 331 (450)
T PRK14087 255 GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP-- 331 (450)
T ss_pred hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc--
Confidence 35678888985 55678889999999999999987653 233445667777665 56777777666553332210
Q ss_pred CCCCcccccccccccCCCccHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhCC
Q psy15622 164 GKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRK----TVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p----~~~~~~i~~~~~~~~~~~~ 215 (217)
...++|.+.+.++++.+.. .++.++|. +.+.+.||.
T Consensus 332 --------------~~~~it~~~v~~~l~~~~~~~~~~~t~~~I~--~~Va~~~~i 371 (450)
T PRK14087 332 --------------EEKIITIEIVSDLFRDIPTSKLGILNVKKIK--EVVSEKYGI 371 (450)
T ss_pred --------------CCCCCCHHHHHHHHhhccccccCCCCHHHHH--HHHHHHcCC
Confidence 0245888888888876532 25666664 344555553
No 126
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.03 E-value=5.7e-09 Score=89.12 Aligned_cols=50 Identities=32% Similarity=0.433 Sum_probs=41.8
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCC-ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPW-KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.+..|++++|++++++.+.-.+.. ++ .++||.|+||+||||+++++++.+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 467899999999999988755431 23 579999999999999999999876
No 127
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.00 E-value=1.3e-08 Score=82.28 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=80.1
Q ss_pred CCCCCCCccc-c--hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 13 RPDVQWSDIA-N--QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 13 ~~~~~~~dl~-g--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
.|+.+|++++ | ...+...+......+- .....++||||+|+|||.|++++++.+..
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 4678899975 5 3344555554443211 12245899999999999999999874321
Q ss_pred -------------------------------------------------------------hhccccCCCC---CCcHHH
Q psy15622 79 -------------------------------------------------------------VHCGASNFPW---NIDDAF 94 (217)
Q Consensus 79 -------------------------------------------------------------~~~~~t~~~~---~l~~~l 94 (217)
+++++...|. .+++.+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 2223334444 457888
Q ss_pred Hhhccc--cccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 95 LRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 95 ~~rf~~--~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
.+||.. .+.+..|+.+.|.++++......++. ++.-...|++..++ +.+++..++..-.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 889965 67788899999999999999887775 44445667777653 6677766665443
No 128
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.3e-08 Score=85.94 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=66.3
Q ss_pred cccCCCCC---CcHHHHhhccc--cccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 82 GASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 82 ~~t~~~~~---l~~~l~~rf~~--~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
.+-..|.. +.+.+.+||.. .+.+..|+.+.|..+++...+..++. ++.-...+++... -+.++++.+......
T Consensus 214 tsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~ 292 (408)
T COG0593 214 TSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDA 292 (408)
T ss_pred EcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence 33344554 45899999964 46788899999999999987776665 4445666777765 356677666554444
Q ss_pred HHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCC---CCHHHHH
Q psy15622 156 MAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKT---VTAADIR 204 (217)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~---~~~~~i~ 204 (217)
.+... ...+|.+.+.++|+....+ ++.++|.
T Consensus 293 ~a~~~------------------~~~iTi~~v~e~L~~~~~~~~~itie~I~ 326 (408)
T COG0593 293 FALFT------------------KRAITIDLVKEILKDLLRAGEKITIEDIQ 326 (408)
T ss_pred HHHhc------------------CccCcHHHHHHHHHHhhcccccCCHHHHH
Confidence 33322 2356666666666665543 4555543
No 129
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.99 E-value=1.1e-08 Score=87.80 Aligned_cols=52 Identities=33% Similarity=0.446 Sum_probs=43.6
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.+...|++|+|++++|..|...+..|. ..+++|.|++||||||++|++++++
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 457799999999999999987775422 2589999999999999999997654
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.93 E-value=4.3e-09 Score=100.15 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=75.2
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc----------h---
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN----------Q--- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~----------~--- 78 (217)
...+-+++.++|.+..+..+.+.+.- +....++|+||||||||++++.+|..+. .
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 33456788899998876666655532 2235799999999999999999998551 1
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.+|++|+..+
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e 318 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 318 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHH
Confidence 1224555443
Q ss_pred -----CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCC
Q psy15622 89 -----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL 125 (217)
Q Consensus 89 -----~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~ 125 (217)
.+|+++.|||+ .|.++.|+.+++..+++.+..++..
T Consensus 319 ~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 319 YRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred HHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 58999999997 5789999999999999988766543
No 131
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.92 E-value=5.2e-08 Score=82.46 Aligned_cols=107 Identities=24% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 86 FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 86 ~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
.|+.++..++.|+ ..+...+-+.++.++|++.-...-.+. ++..++.|+..-..-|-+-..++..-|...|.++.
T Consensus 341 sPhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--- 416 (450)
T COG1224 341 SPHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--- 416 (450)
T ss_pred CCCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---
Confidence 5778899999987 445555557778888888766554443 33456667766655555555666666666776664
Q ss_pred CCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15622 165 KSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEK 212 (217)
Q Consensus 165 ~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~ 212 (217)
...|..+|++.|-+-+. -.+..++-.++|...
T Consensus 417 --------------~~~V~~~dVe~a~~lF~--D~krSv~~v~~~~~~ 448 (450)
T COG1224 417 --------------SKRVEVEDVERAKELFL--DVKRSVEYVEKYEGL 448 (450)
T ss_pred --------------CCeeehhHHHHHHHHHh--hHHHHHHHHHHHHhh
Confidence 45688899999988774 223334444444443
No 132
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.91 E-value=3.2e-08 Score=84.71 Aligned_cols=48 Identities=33% Similarity=0.450 Sum_probs=39.7
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.|..|+|+++++..|.-.+..|. ..+++|.|++|+||||+++++++.+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 57899999999998876664321 2679999999999999999998655
No 133
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.91 E-value=1.3e-08 Score=93.46 Aligned_cols=56 Identities=30% Similarity=0.466 Sum_probs=47.2
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+-.+..|..-+++++|+++.++.+...+.. +++++|+||||||||++++++++.++
T Consensus 7 ~~~~~~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 7 TEEIPVPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred ccccCcchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 345567888899999999999998887752 35899999999999999999998664
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.88 E-value=1.9e-08 Score=94.22 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=98.4
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------------------
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------------- 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------------------- 78 (217)
.++|++++++.|.+.+..... .+ ..-.+|...++|+||||||||++|+++|..++.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~--gl-~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA--GL-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc--cc-cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 379999999999988864221 00 011245457999999999999999999985532
Q ss_pred ----------------------------------------------------------------hhccccCCC-------
Q psy15622 79 ----------------------------------------------------------------VHCGASNFP------- 87 (217)
Q Consensus 79 ----------------------------------------------------------------~~~~~t~~~------- 87 (217)
++++|||..
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~ 615 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhc
Confidence 345677732
Q ss_pred ------------------CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHHc-
Q psy15622 88 ------------------WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELVSDQL- 138 (217)
Q Consensus 88 ------------------~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~la~~~- 138 (217)
..+.|.|+.|++.++.|+..+.++..+|+...+.++ ++. ++.-++.|+...
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~ 695 (758)
T PRK11034 616 SIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGY 695 (758)
T ss_pred ccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCC
Confidence 124577888999999999999999999998776432 332 222345566543
Q ss_pred -cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 139 -EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 139 -~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
..+-.+.+.+++..-....+...+-
T Consensus 696 ~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 696 DRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888777777653
No 135
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=1.8e-08 Score=83.39 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=64.3
Q ss_pred HHhhccccccccCCCHHHHHHHHHHHHhhCCCC-----CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc
Q psy15622 94 FLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-----SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP 168 (217)
Q Consensus 94 l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-----~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~ 168 (217)
+.+|+...+.++..+.++..+++...+...+.. .+..++.|.+.+.|. ++.|..++..+...|..+.
T Consensus 179 l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~------- 250 (269)
T TIGR03015 179 LRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE------- 250 (269)
T ss_pred HHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC-------
Confidence 445767778899999999999998888765431 334567788888887 4569999998888877654
Q ss_pred ccccccccccCCCccHHHHHHHHHhcC
Q psy15622 169 QIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 169 ~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...|+.+++..++..++
T Consensus 251 ----------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 ----------KREIGGEEVREVIAEID 267 (269)
T ss_pred ----------CCCCCHHHHHHHHHHhh
Confidence 45699999999998865
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3.5e-08 Score=85.01 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=89.0
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
..+..+++|+|++++++.|...+.. ++.+..+||+||+|+||||+|+.+|+.+..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4567899999999999999988852 234568999999999999999999985421
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence
Q ss_pred -------hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHH
Q psy15622 79 -------VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVC 150 (217)
Q Consensus 79 -------~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 150 (217)
.++..|+.+..+.+.+++|+ ..+.|+.|+.++..+++.......+++ +.....+++.+.| +++...++.
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHHcCC-CHHHHHHHH
Confidence 22356677888889999998 588999999999888888743222211 2224455555554 344444444
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.87 E-value=2e-08 Score=94.37 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=53.1
Q ss_pred CcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHH--ccCCCHHhHHHHHHHHHHHH
Q psy15622 90 IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELVSDQ--LEGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~la~~--~~g~s~~di~~l~~~a~~~a 157 (217)
..|.++.|++.++.|...+.++..+|++..++++ ++. ++...+.|++. ...+-.+.+++++......+
T Consensus 632 f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 632 FSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred cChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 3567778999999999999999999999888642 111 22335556664 34566788888888877777
Q ss_pred HHHHHh
Q psy15622 158 MRAAIR 163 (217)
Q Consensus 158 ~~~~~~ 163 (217)
+...+-
T Consensus 712 l~~~~l 717 (731)
T TIGR02639 712 LSDEIL 717 (731)
T ss_pred HHHHHH
Confidence 666543
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.85 E-value=1.3e-08 Score=97.04 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=81.8
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
...+-+++.++|.+.....+.+.+.- +....++|+||||||||++++.+|..+..
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 33455778888988876666655531 23367899999999999999999875410
Q ss_pred ----------------------------------------------------------------------hhccccCCC-
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFP- 87 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~- 87 (217)
.+|++|+..
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDE 313 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHH
Confidence 122344433
Q ss_pred ----CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCc-----ccHHHHHHHccCCC
Q psy15622 88 ----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASD-----LDLELVSDQLEGYS 142 (217)
Q Consensus 88 ----~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~-----~~~~~la~~~~g~s 142 (217)
..+|+++.|||. .+.++.|+.+++..|++.+..++..... ..+...+..+..|.
T Consensus 314 ~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 314 YRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred HHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 357999999996 5789999999999999988777654322 23444455555444
No 139
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1e-07 Score=80.98 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=79.9
Q ss_pred CCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------------
Q psy15622 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------------- 78 (217)
Q Consensus 16 ~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------------- 78 (217)
.+|++++|++.+++.+...+.. ++.+..+||+||+|+|||++|+++|+.+-+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3689999999999999888742 234577899999999999999999985421
Q ss_pred -------------------------------------------------------hhccccCCCCCCcHHHHhhcccccc
Q psy15622 79 -------------------------------------------------------VHCGASNFPWNIDDAFLRRLEKRIY 103 (217)
Q Consensus 79 -------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~~~i~ 103 (217)
.++.+|+.++.+.+.+++|+. .+.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~-~~~ 148 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ-IYK 148 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce-eee
Confidence 333566788899999999995 788
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccC
Q psy15622 104 VPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140 (217)
Q Consensus 104 ~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g 140 (217)
|+.|+.++....+..... +. +......++..+.|
T Consensus 149 ~~~~~~~~~~~~l~~~~~--~~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYN--DI-KEEEKKSAIAFSDG 182 (313)
T ss_pred CCCcCHHHHHHHHHHHhc--CC-CHHHHHHHHHHcCC
Confidence 888888877666654432 22 22234455555554
No 140
>KOG0991|consensus
Probab=98.84 E-value=3.6e-08 Score=79.13 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=46.6
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
++.+|.+..+.||+|.++..+.|.-+... +.- .+++|.|||||||||.+.++|+.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~----------gnm--P~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE----------GNM--PNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc----------CCC--CceEeeCCCCCchhhHHHHHHHH
Confidence 56789999999999999999999877642 222 36999999999999999999973
No 141
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.4e-07 Score=80.24 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..+..+++|+|++.+++.|.+.+.. ++.+..+||+||+|+||+++|.++|+.+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4667899999999999999988853 3445789999999999999999999855
No 142
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.77 E-value=1.6e-07 Score=87.96 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=99.3
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
+.|.|-++.++.|..++...+. + ..|+..++|+|+||||||++++.+++.+..
T Consensus 755 D~LPhREeEIeeLasfL~paIk------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 7899999999999988864332 1 123334569999999999999999764310
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.+++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 2335
Q ss_pred ccCC---CCCCcHHHHhhccc-cccccCCCHHHHHHHHHHHHhhCC-CCCcccHHHHHHHccCCCHHhHHHHHHHHHHHH
Q psy15622 83 ASNF---PWNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQVD-LASDLDLELVSDQLEGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 83 ~t~~---~~~l~~~l~~rf~~-~i~~~~p~~~~r~~il~~~l~~~~-~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a 157 (217)
++|. +..+++.+.+||.. .+.|++++.++..+|++.-+.... .-++..+..+|+... ...||++.+.. .+..|
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALD-ILRrA 985 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQ-ICRKA 985 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHH-HHHHH
Confidence 5654 55667788888864 478899999999999998887542 223334556666544 33567765432 22222
Q ss_pred HHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 158 MRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
+.. .. ...|+.+|+.+|+..+-
T Consensus 986 gEi----ke------------gskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 986 FEN----KR------------GQKIVPRDITEATNQLF 1007 (1164)
T ss_pred Hhh----cC------------CCccCHHHHHHHHHHHH
Confidence 211 00 12588888888887663
No 143
>KOG1969|consensus
Probab=98.76 E-value=5.3e-08 Score=88.75 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=99.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHh----hcC-------------Chhhhhh----hcCCCce-EEEecCCCCcHH
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVIL----PLE-------------KPSYFQH----IRKPWKG-VLMVGPPGTGKT 66 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~----~~~-------------~~~~~~~----~~~~~~~-vll~Gp~G~GKT 66 (217)
++.++.+.+|.||.|.+.+-..+..++.. ..+ ..+.+.. ..+|++. +||+||||-|||
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 56788999999999988886666555431 011 0011111 1255544 677999999999
Q ss_pred HHHHHHHHHhch--------------------------------------------------------------------
Q psy15622 67 MLAKAVAIVYNQ-------------------------------------------------------------------- 78 (217)
Q Consensus 67 tla~aia~~~~~-------------------------------------------------------------------- 78 (217)
|||+.||+-.+.
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~G 420 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATG 420 (877)
T ss_pred HHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhc
Confidence 999999986655
Q ss_pred -------------------hhccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHH
Q psy15622 79 -------------------VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQ 137 (217)
Q Consensus 79 -------------------~~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~ 137 (217)
.+|+.+|... -|+++. -|..++.|+.|......+-++.+..+-++. .+...|...
T Consensus 421 kq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L 496 (877)
T KOG1969|consen 421 KQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--ADSKALNAL 496 (877)
T ss_pred CcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHH
Confidence 3335555433 345444 778889999999988888888888766653 344455555
Q ss_pred ccCCCHHhHHHHHHHHHHHHHHH
Q psy15622 138 LEGYSASDIVVVCRDAAFMAMRA 160 (217)
Q Consensus 138 ~~g~s~~di~~l~~~a~~~a~~~ 160 (217)
++ ++..||....+.-.+.+.+.
T Consensus 497 ~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 497 CE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HH-HhcchHHHHHHHHHHHHHhc
Confidence 55 55679988888777766554
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.75 E-value=6.7e-08 Score=80.12 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=28.7
Q ss_pred ccccCCCC-----CCcHHHHhhccccccccCCCHHHHHHHHHHHH
Q psy15622 81 CGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 120 (217)
Q Consensus 81 ~~~t~~~~-----~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l 120 (217)
++|+|... .+++++++|| ..+.++.|+.++-.+|++...
T Consensus 155 IaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 155 IFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred EEeeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 36666542 4578888888 568888899888888887754
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.74 E-value=2.8e-08 Score=94.52 Aligned_cols=117 Identities=25% Similarity=0.314 Sum_probs=83.3
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------------- 78 (217)
..-.++.++|.++.++.+.+.+.. +...+++|+||||||||++++.+|..+..
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345678888888888888877642 23468999999999999999999985521
Q ss_pred -------------------------------------------------------------------hhccccCCC----
Q psy15622 79 -------------------------------------------------------------------VHCGASNFP---- 87 (217)
Q Consensus 79 -------------------------------------------------------------------~~~~~t~~~---- 87 (217)
.+|++|+..
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRK 321 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHH
Confidence 222555433
Q ss_pred -CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHccCCCH
Q psy15622 88 -WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGYSA 143 (217)
Q Consensus 88 -~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~-~~~~~~~la~~~~g~s~ 143 (217)
...|+++.+||.. +.++.|+.++...|++.+... .++. ++..+..++..+.+|.+
T Consensus 322 ~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 322 HIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred HHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 2478999999974 788889999999998876543 2222 33446667777776655
No 146
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=4.8e-08 Score=77.48 Aligned_cols=102 Identities=21% Similarity=0.325 Sum_probs=65.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhh---------ccccC-CCCCCcHHHHh-hccccccccCCCH------------
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVH---------CGASN-FPWNIDDAFLR-RLEKRIYVPLPSS------------ 109 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~---------~~~t~-~~~~l~~~l~~-rf~~~i~~~~p~~------------ 109 (217)
+-..|.|||||||||++|++-....... +...| ....+|..-+| |...++.-|.|=.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 4578999999999999999988665422 11112 22245654444 7777776655522
Q ss_pred ------HHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 110 ------SGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 110 ------~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
.+..++++..+++..+.+++ -+.|-+..-|+||++-+++|...++
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEV-KDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEV-KDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHh-HHHhhCCccCCChhHHHHHHHHHHH
Confidence 34445556666665554332 3445555568999999999975543
No 147
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.73 E-value=1.8e-08 Score=79.96 Aligned_cols=48 Identities=42% Similarity=0.620 Sum_probs=37.6
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.|+||+|++..|..|.-...- +.++|++||||||||++|+++...++.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 378999999999999877742 468999999999999999999986655
No 148
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.70 E-value=1.7e-08 Score=64.91 Aligned_cols=35 Identities=40% Similarity=0.906 Sum_probs=32.8
Q ss_pred CCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy15622 180 RPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214 (217)
Q Consensus 180 ~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~ 214 (217)
.+||.+||..||++++|||+.+|+.+|++|.++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999998
No 149
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.69 E-value=4.7e-07 Score=83.88 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=39.5
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.|.+|+|++.++..|.-....|. ..+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 57899999999988876654321 1479999999999999999999877
No 150
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.69 E-value=4e-07 Score=82.28 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCcHHHHhhcccccc-ccCCCHHHHHHHHHHHHh
Q psy15622 89 NIDDAFLRRLEKRIY-VPLPSSSGRQELLRLILR 121 (217)
Q Consensus 89 ~l~~~l~~rf~~~i~-~~~p~~~~r~~il~~~l~ 121 (217)
.+++++++||+..+. ...|+.+...+|.+..+.
T Consensus 368 ~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 368 DLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 589999999988654 577899888889888764
No 151
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.4e-08 Score=84.06 Aligned_cols=50 Identities=38% Similarity=0.557 Sum_probs=43.1
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
...|.|++|++..|..+.-... .+.+++++||||||||++|+.+.+.++.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCC
Confidence 4578999999999999987774 3578999999999999999999886655
No 152
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.68 E-value=3e-08 Score=79.94 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=58.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCCcH-----HHHhhccccccccCCCHHHHHHH---------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDD-----AFLRRLEKRIYVPLPSSSGRQEL--------- 115 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l~~-----~l~~rf~~~i~~~~p~~~~r~~i--------- 115 (217)
.++..+-|.|+||||||||+|++++......+..+-....+.+ ++.+-.+.++.-|.-+.+-|..+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 5678899999999999999999999776633322222222211 12222222222222111111111
Q ss_pred ----------HHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 116 ----------LRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 116 ----------l~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
+..++..+++.+ ..+-++.+.+||++.++++...++
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~----~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPP----SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCH----HHHhcCchhcChhHHHHHHHHHHh
Confidence 455555555543 345566678999999998865544
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.68 E-value=3.2e-07 Score=87.51 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=93.3
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
..++|++..++.+...+...... ...-.+|...++|+||+|||||++|++|+..+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHH
Confidence 45889999988888888532110 0011133346899999999999999999974311
Q ss_pred --------------------------------------------------------------------hhccccCCCC--
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPW-- 88 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~-- 88 (217)
++|.|||...
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~ 724 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDL 724 (857)
T ss_pred HHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHH
Confidence 2456777531
Q ss_pred -----------------------CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCCCccc---HHHHH
Q psy15622 89 -----------------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLASDLD---LELVS 135 (217)
Q Consensus 89 -----------------------~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~~~~~---~~~la 135 (217)
...|+++.|++.++.|.+++.+...+|++.++..+ ++.-.++ ++.|+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~ 804 (857)
T PRK10865 725 IQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLS 804 (857)
T ss_pred HHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHH
Confidence 13467888999899999999999999988877542 2222233 34444
Q ss_pred HHc--cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 136 DQL--EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 136 ~~~--~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
+.. ..|-.+.+.++++.-....+.+.+-
T Consensus 805 ~~gy~~~~GARpL~r~I~~~i~~~la~~iL 834 (857)
T PRK10865 805 ENGYDPVYGARPLKRAIQQQIENPLAQQIL 834 (857)
T ss_pred HcCCCccCChHHHHHHHHHHHHHHHHHHHH
Confidence 432 2233568888888777776666543
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.65 E-value=2.8e-07 Score=88.01 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=97.6
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
..++|++..++.+...+..... -.....+|...++|+||+|||||++|++||..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc---cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4588999999888888763211 00011245567999999999999999999974311
Q ss_pred --------------------------------------------------------------------hhccccCCCCC-
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPWN- 89 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~~- 89 (217)
++|+|||....
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~ 721 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQF 721 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHh
Confidence 35577776321
Q ss_pred ------------------------CcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHH
Q psy15622 90 ------------------------IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELVS 135 (217)
Q Consensus 90 ------------------------l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~la 135 (217)
..|.|+.|++.++.|.+++.+...+|+...+..+ ++. ++...+.|+
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~ 801 (852)
T TIGR03346 722 IQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLA 801 (852)
T ss_pred HhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHH
Confidence 2245666888899999999999999998777531 221 222355666
Q ss_pred HHc--cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 136 DQL--EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 136 ~~~--~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
+.. ..+..+.+.+++.......+.+.+-
T Consensus 802 ~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 802 EAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred HhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 652 3577899999999888888777654
No 155
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.65 E-value=4.9e-07 Score=83.28 Aligned_cols=56 Identities=34% Similarity=0.512 Sum_probs=46.8
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-.++.|+..|++++|+++.++.|...+.. ++.++|+|||||||||++++++..++.
T Consensus 21 ~~~~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 21 SDIEVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred eecccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 34567889999999999999998877742 257999999999999999999985543
No 156
>KOG2035|consensus
Probab=98.64 E-value=1.7e-07 Score=77.03 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=93.5
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH-hch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV-YNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~-~~~--------- 78 (217)
++.++.+.+++.+.+.++....|...... ..-.++++|||||+||-|.+.++.+. +|.
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 35678889999999999998888876631 11247999999999999999998763 332
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRT 150 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRT 150 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHH
Confidence
Q ss_pred --------hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHH
Q psy15622 79 --------VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVV 149 (217)
Q Consensus 79 --------~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l 149 (217)
-++..+|....+-+++++|+ ..+.+|.|+.++...++...+++-++. +..-+..+++. |.+++.+.
T Consensus 151 MEkYs~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k----S~~nLRrA 225 (351)
T KOG2035|consen 151 MEKYSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK----SNRNLRRA 225 (351)
T ss_pred HHHHhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH----hcccHHHH
Confidence 23367788888899999987 678999999999999999999988776 32234445555 44566543
No 157
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.62 E-value=4.1e-08 Score=73.32 Aligned_cols=25 Identities=56% Similarity=0.943 Sum_probs=23.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+|+|+||||||||++++.+|..++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4899999999999999999998865
No 158
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.62 E-value=1.9e-07 Score=79.17 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.1
Q ss_pred hccccCCCC------------CCcHHHHhhccccccccCCCHHHHHHHHHHHHh
Q psy15622 80 HCGASNFPW------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR 121 (217)
Q Consensus 80 ~~~~t~~~~------------~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~ 121 (217)
+++|.|... .++.+++.||-.++.+..|+.++-.+|+.....
T Consensus 181 viAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 181 LFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred EEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc
Confidence 347777643 358999999998899999999998888876543
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.61 E-value=3.6e-07 Score=87.01 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHHc--cCCCHHhHHHHHHHHHHHHHH
Q psy15622 92 DAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELVSDQL--EGYSASDIVVVCRDAAFMAMR 159 (217)
Q Consensus 92 ~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~la~~~--~g~s~~di~~l~~~a~~~a~~ 159 (217)
|.|+.|++.++.|...+.++..+|+...+..+ ++. ++...+.|+... +.|-.+.+.++++.-...++.
T Consensus 704 peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 704 PEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 46677999999999999999999998877642 221 222245566652 345578888888777766666
Q ss_pred HHHh
Q psy15622 160 AAIR 163 (217)
Q Consensus 160 ~~~~ 163 (217)
..+-
T Consensus 784 ~~~l 787 (821)
T CHL00095 784 EEVL 787 (821)
T ss_pred HHHH
Confidence 6543
No 160
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.60 E-value=2.2e-06 Score=76.20 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.++|.+++++.+...+. .+.+++|.||||||||++|++++..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHH
Confidence 35666666666665552 3578999999999999999999963
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5e-07 Score=84.03 Aligned_cols=142 Identities=21% Similarity=0.244 Sum_probs=97.4
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
..++|+++..+.+.+.+.... .-...-.+|-.++||.||+|+|||-||+++|.++--
T Consensus 491 ~rViGQd~AV~avs~aIrraR---aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR---AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh---cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 458999999999998885311 111222366678999999999999999999986542
Q ss_pred --------------------------------------------------------------------hhccccCCCCC-
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPWN- 89 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~~- 89 (217)
++++|+|-...
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~ 647 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEE 647 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHH
Confidence 44455553321
Q ss_pred ---------------------------CcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHH
Q psy15622 90 ---------------------------IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLE 132 (217)
Q Consensus 90 ---------------------------l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~ 132 (217)
..|.|+.|++.+|.|...+.+...+|+...+..+ ++. ++.-.+
T Consensus 648 i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~ 727 (786)
T COG0542 648 ILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKD 727 (786)
T ss_pred HHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHH
Confidence 1356667999999999999999999998887643 221 222245
Q ss_pred HHHHHc--cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 133 LVSDQL--EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 133 ~la~~~--~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
.|+... +.|-++-+.++.+.-....+...+-
T Consensus 728 ~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL 760 (786)
T COG0542 728 FLAEKGYDPEYGARPLRRAIQQEIEDPLADEIL 760 (786)
T ss_pred HHHHhccCCCcCchHHHHHHHHHHHHHHHHHHH
Confidence 566654 4566778888777777666666543
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.56 E-value=1.4e-07 Score=80.94 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=42.8
Q ss_pred CC-cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 18 WS-DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 18 ~~-dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
|+ ++.|+++.++.+.+.+.... .+.....+.++|+|||||||||+|++|++.++.
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44 89999999999888775322 122223467899999999999999999998866
No 163
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.3e-06 Score=74.21 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=101.3
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
+.+.+-++.++.+...+...+. ...| ..++++||||||||..++.+++.+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~-------~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR-------GERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc-------CCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3489999999999888754332 2233 45999999999999999999874432
Q ss_pred ---------------------------------------------------------------------hhccccCCCC-
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPW- 88 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~- 88 (217)
.+++.+|..+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 2335555543
Q ss_pred --CCcHHHHhhcc-ccccccCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHccCCCHHhH---HHHHHHHHHHHHH
Q psy15622 89 --NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGYSASDI---VVVCRDAAFMAMR 159 (217)
Q Consensus 89 --~l~~~l~~rf~-~~i~~~~p~~~~r~~il~~~l~~~---~~~~~~~~~~la~~~~g~s~~di---~~l~~~a~~~a~~ 159 (217)
.+++.+.+++. ..|.||+-+.++...|++.-.+.. +.-.+.-++.+|.... ..+||. -.+++.|...|-+
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHh
Confidence 56788888663 458999999999999998877542 1112222333333332 233344 4566777777755
Q ss_pred HHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCH
Q psy15622 160 AAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTA 200 (217)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~ 200 (217)
+. ...++.++...|.+...+.+..
T Consensus 248 ~~-----------------~~~v~~~~v~~a~~~~~~~~~~ 271 (366)
T COG1474 248 EG-----------------SRKVSEDHVREAQEEIERDVLE 271 (366)
T ss_pred hC-----------------CCCcCHHHHHHHHHHhhHHHHH
Confidence 54 4568888888886555543333
No 164
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.55 E-value=3.3e-07 Score=75.24 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhc---------------------------cccCCCCCCcHHHHh-hcccc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC---------------------------GASNFPWNIDDAFLR-RLEKR 101 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~---------------------------~~t~~~~~l~~~l~~-rf~~~ 101 (217)
.+++-+.|.||+|||||||+|+|++.+.+.-+ ..+..+-.+-+.+.. |+++.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 34567899999999999999999998775111 111112222333333 88777
Q ss_pred ccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHH-ccCCCHHhHHHHHHHHH
Q psy15622 102 IYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQ-LEGYSASDIVVVCRDAA 154 (217)
Q Consensus 102 i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~-~~g~s~~di~~l~~~a~ 154 (217)
-.++.++.++.. ++...++..++ ..++.+ ...+||++-+++....+
T Consensus 106 ~~~~~~~~~D~~-~v~~aL~~~~~------~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 106 GLFGRPSKEDEE-IVEEALELLGL------EHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred ccccCCCHhHHH-HHHHHHHHhCc------HHHhcCcccccChhHHHHHHHHHH
Confidence 777777777766 55566666554 334433 36799999987765444
No 165
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.54 E-value=9e-07 Score=84.39 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=47.8
Q ss_pred cHHHHhhccccccccCCCHHHHHHHHHHHHhhC--------CCC---CcccHHHHHHHcc--CCCHHhHHHHHHHHHHHH
Q psy15622 91 DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV--------DLA---SDLDLELVSDQLE--GYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 91 ~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~--------~~~---~~~~~~~la~~~~--g~s~~di~~l~~~a~~~a 157 (217)
.|+++.|++ ++.|...+.++..+|+...+..+ ++. ++...+.|++... .|-.+.+.++++.-...+
T Consensus 752 ~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 752 KPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred cHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 456666886 77888889999999998777542 322 2223556666653 355788888888777777
Q ss_pred HHHHH
Q psy15622 158 MRAAI 162 (217)
Q Consensus 158 ~~~~~ 162 (217)
+...+
T Consensus 831 la~~~ 835 (852)
T TIGR03345 831 LSRQI 835 (852)
T ss_pred HHHHH
Confidence 66654
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=7.5e-07 Score=75.74 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=42.1
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.|++|+|++.+++.+...+.. ++-+..+||+||+|+||+++|.++|..+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999998852 2345789999999999999999998753
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.6e-07 Score=79.10 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=40.5
Q ss_pred CCCcccc-hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 17 QWSDIAN-QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 17 ~~~dl~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.|++|+| ++.+++.|...+.. ++.+..+||+||+|+||+++|+++|+.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4788888 88899998888742 3455778999999999999999998854
No 168
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.53 E-value=1.4e-06 Score=78.30 Aligned_cols=45 Identities=40% Similarity=0.581 Sum_probs=36.5
Q ss_pred CCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 16 ~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|+.|+..+++.+.-.+ ..+..++|.|||||||||+++++++
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhc
Confidence 47888999988877666444 2346799999999999999999985
No 169
>PHA02244 ATPase-like protein
Probab=98.52 E-value=1.7e-06 Score=74.49 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..++|+||+|||||++|+++|..++
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999997554
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.51 E-value=4.5e-07 Score=79.82 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=34.2
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
++++.+.++..+.+...+. .++.++|+||||||||++|+.+|..+
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4566666666666655543 24789999999999999999999755
No 171
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=4.5e-07 Score=71.27 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=28.2
Q ss_pred cccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHH
Q psy15622 82 GASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLI 119 (217)
Q Consensus 82 ~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~ 119 (217)
.+|+.+..+.+++.+|+. .+.|+.|+.++..+++...
T Consensus 131 l~~~~~~~l~~~i~sr~~-~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 131 LITPSPEKLLPTIRSRCQ-VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EEECChHhChHHHHhhcE-EeeCCCCCHHHHHHHHHHc
Confidence 556677888888888884 7888888888777776664
No 172
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=6.8e-07 Score=71.94 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++-|.|.||||+|||||+|+|.+..+.
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~ 56 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDP 56 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence 46677999999999999999999996665
No 173
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.48 E-value=2.1e-07 Score=81.21 Aligned_cols=62 Identities=29% Similarity=0.341 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhh--cCCCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
-++|+++.++.+...+........+.... ..+|++++|+||||||||++++++|..++..++
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 38999999999987775432222111111 234589999999999999999999999887544
No 174
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.47 E-value=9.8e-07 Score=75.53 Aligned_cols=56 Identities=30% Similarity=0.387 Sum_probs=40.3
Q ss_pred CCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 16 ~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
...+.++|+.+.++..--.+.. -+...-.++++||.||||||||.+|-+||+.++.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~m-------Ik~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDM-------IKEGKIAGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHH-------HHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred eccccccChHHHHHHHHHHHHH-------HhcccccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 3346799999998887666543 2223345789999999999999999999998875
No 175
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.45 E-value=1.7e-06 Score=74.06 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++|.++++..+...+. .++.++|-||||||||++++++|..++.
T Consensus 26 ~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~ 69 (329)
T COG0714 26 VVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGL 69 (329)
T ss_pred eeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCC
Confidence 6666666665554443 2578999999999999999999986654
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.44 E-value=2.2e-06 Score=77.02 Aligned_cols=47 Identities=36% Similarity=0.547 Sum_probs=34.1
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.++.|...+++.+.-.+ ..+..++|+||||||||++++.+++.+.
T Consensus 189 d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 5667777766665543222 2457899999999999999999986443
No 177
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.44 E-value=6.7e-07 Score=73.41 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDL 129 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~ 129 (217)
..++.+-|+|+|||||||++|.+.+...+..+...-....+ ...+.+++.+.+..+++..++.+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i--------------~~~~~~~~~~~v~elL~~Vgl~~-- 100 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI--------------TKLSKEERRERVLELLEKVGLPE-- 100 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch--------------hhcchhHHHHHHHHHHHHhCCCH--
Confidence 45678999999999999999999998875433222111110 00116677788888888888543
Q ss_pred cHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 130 DLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 130 ~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
+.+.+.-+.|||++.+++....++
T Consensus 101 --~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 101 --EFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred --HHhhcCCcccCchhhhhHHHHHHH
Confidence 446677789999999998865443
No 178
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=7.5e-07 Score=76.14 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=32.3
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLI 119 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~ 119 (217)
.++.+|+.++.+.+.+++|+.. +.|+.|+.++..+.+...
T Consensus 138 ~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 138 VLLLISHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWLQQA 177 (328)
T ss_pred EEEEEECChhhCcHHHHhhcee-eeCCCcCHHHHHHHHHHh
Confidence 4458899999999999999965 888888888777666543
No 179
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.41 E-value=1.5e-07 Score=85.33 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCCcHHHHh--------hccccccccCCCHHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLR--------RLEKRIYVPLPSSSGRQELLRLILR 121 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l~~~l~~--------rf~~~i~~~~p~~~~r~~il~~~l~ 121 (217)
+|+..+++.||||||||++.|+||+.+++.- ++.+.|..-+-.++. .+...+..|.+..+-.-+-+...+.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~-G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~ 495 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGS-GRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCC-CceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHH
Confidence 6788999999999999999999999998754 444444322111211 4445566666543233444555566
Q ss_pred hCCCCCc-ccHHHHHHHccCCCHHhHHHHHH
Q psy15622 122 QVDLASD-LDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 122 ~~~~~~~-~~~~~la~~~~g~s~~di~~l~~ 151 (217)
+.++..- ..++..+.+..-+|+++-+++.-
T Consensus 496 ~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 496 KVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred HcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 6555321 12444455666789999887753
No 180
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.38 E-value=9.6e-07 Score=75.66 Aligned_cols=99 Identities=19% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhcccc---CCCCCCcHHHHhhccccc----cccC----------------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGAS---NFPWNIDDAFLRRLEKRI----YVPL---------------- 106 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t---~~~~~l~~~l~~rf~~~i----~~~~---------------- 106 (217)
.++.-+.|.|||||||||++|+||++..+.-+-.. .....+++. .|.+..++ .||.
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~-kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~ 107 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE-KRPIGMVFQSYALFPHMTVEENVAFGLKVRKK 107 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-hcccceeecCcccCCCCcHHHHhhhhhhhcCC
Confidence 45566889999999999999999998876322110 111123332 22111111 1222
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcccHHHHHH-HccCCCHHhHHHHHHHHHH
Q psy15622 107 PSSSGRQELLRLILRQVDLASDLDLELVSD-QLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 107 p~~~~r~~il~~~l~~~~~~~~~~~~~la~-~~~g~s~~di~~l~~~a~~ 155 (217)
+..+++.+....+++.+++.. ++. .-+.+||++-++++...++
T Consensus 108 ~~~~~i~~rv~e~L~lV~L~~------~~~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 108 LKKAEIKARVEEALELVGLEG------FADRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred CCHHHHHHHHHHHHHHcCchh------hhhhChhhhChHHHHHHHHHHHh
Confidence 344566677777887766543 343 4467999999887654443
No 181
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.4e-06 Score=70.74 Aligned_cols=99 Identities=20% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCC------------cHHHHh--hccccccccC----CCHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNI------------DDAFLR--RLEKRIYVPL----PSSSG 111 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l------------~~~l~~--rf~~~i~~~~----p~~~~ 111 (217)
.++.-+.|.||||||||||.+.||++....-+...-....+ +.+++. .....+.++. -...+
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 46678999999999999999999998876332111111100 112222 1111122222 24566
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 112 RQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 112 r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+.+....+++.+++..-. ..+...+||+.-+++....
T Consensus 107 ~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 107 ARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred HHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHH
Confidence 777889999988875321 2344578999887665433
No 182
>KOG0990|consensus
Probab=98.38 E-value=2.3e-06 Score=71.66 Aligned_cols=57 Identities=21% Similarity=0.115 Sum_probs=46.5
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
-+..++++..++|+++.+++...+.++... .+. .+.|+|||||+|||+...+.|..+
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~-----------~~l-Ph~L~YgPPGtGktsti~a~a~~l 86 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGM-----------PGL-PHLLFYGPPGTGKTSTILANARDF 86 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccC-----------CCC-CcccccCCCCCCCCCchhhhhhhh
Confidence 356788999999999999999999888432 112 289999999999999999998733
No 183
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.37 E-value=5.2e-07 Score=78.79 Aligned_cols=62 Identities=29% Similarity=0.342 Sum_probs=44.9
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.++|+++.++.+...+........+..... ..+.++||+||||||||++|+++|+.++..++
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi 79 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChhe
Confidence 389999999999877754222111111111 23588999999999999999999999887554
No 184
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.37 E-value=8.9e-07 Score=67.96 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+++..++|+|||||||||+.+++|....+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 57788999999999999999999987765
No 185
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.35 E-value=2e-06 Score=70.05 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=65.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccc---cCCCCCCcHHHHh-hccccc----cccCC--------------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGA---SNFPWNIDDAFLR-RLEKRI----YVPLP-------------- 107 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~---t~~~~~l~~~l~~-rf~~~i----~~~~p-------------- 107 (217)
..+.-+.|.|||||||||+++.|-+.+....+-. -....++|+.-+| ++..++ .||..
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~ 104 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG 104 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC
Confidence 4556789999999999999999999887633211 1223345554444 555554 35553
Q ss_pred -CHHHHHHHHHHHHhhCCCCCcccHHHHH-HHccCCCHHhHHHHHHHHHHHH
Q psy15622 108 -SSSGRQELLRLILRQVDLASDLDLELVS-DQLEGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 108 -~~~~r~~il~~~l~~~~~~~~~~~~~la-~~~~g~s~~di~~l~~~a~~~a 157 (217)
+++.+.+-...++..+++++ .+++ +..+.+||++-+++....++.|
T Consensus 105 w~k~~i~~r~~ELl~lvgL~p----~~~~~RyP~eLSGGQQQRVGv~RALAa 152 (309)
T COG1125 105 WDKERIKKRADELLDLVGLDP----SEYADRYPHELSGGQQQRVGVARALAA 152 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCH----HHHhhcCchhcCcchhhHHHHHHHHhc
Confidence 34445555566666666643 2334 4446899999998876555443
No 186
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.35 E-value=6.5e-07 Score=78.69 Aligned_cols=61 Identities=28% Similarity=0.421 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHHhhcCChhhh----hhhcCCCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSYF----QHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++|++++++.|...+..+...-... .....+..++||+||||||||++|+++|..++..++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~ 137 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFA 137 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCce
Confidence 7999999999876664322211100 011124568999999999999999999998876544
No 187
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.35 E-value=1.4e-06 Score=74.25 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+.-+.|.|||||||||++|.||++..+
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45677999999999999999999998876
No 188
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.34 E-value=8.1e-07 Score=79.60 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCC--CCCcH----HHHhhccccccccCCC---------------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFP--WNIDD----AFLRRLEKRIYVPLPS--------------- 108 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~--~~l~~----~l~~rf~~~i~~~~p~--------------- 108 (217)
+++..+-|+|+|||||||++|+|++...+.-.-.+-.. ..+.. .++++.+.++.-|.-+
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 56778999999999999999999998876221111111 11111 1222333333222211
Q ss_pred -------HHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 109 -------SSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 109 -------~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
..++.+.+..++...++.. ..+.+..+.|||++-++++...++
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~----~~l~ryP~elSGGQrQRvaIARAL 444 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPP----EFLDRYPHELSGGQRQRVAIARAL 444 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCH----HHHhcCchhcCcchhHHHHHHHHH
Confidence 2344444555566666542 245667789999999988865544
No 189
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.6e-06 Score=72.12 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++++|.+.+...+...... .++.+..+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 3567777777777766642 112234699999999999999999998665
No 190
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.31 E-value=2.5e-06 Score=73.93 Aligned_cols=52 Identities=29% Similarity=0.387 Sum_probs=41.5
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
...|.-++|++..+..|-.....|. -.|+||.|+.|+||||++|+|+..++.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P~------------iggvLI~G~kGtaKSt~~Rala~LLp~ 64 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDPQ------------IGGALIAGEKGTAKSTLARALADLLPE 64 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcccc------------cceeEEecCCCccHHHHHHHHHHhCCc
Confidence 3567889999999888876554322 168999999999999999999986654
No 191
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.31 E-value=3.8e-07 Score=67.01 Aligned_cols=25 Identities=52% Similarity=0.656 Sum_probs=18.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++||.|+||+|||++|+++|+.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC
Confidence 4899999999999999999997776
No 192
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.31 E-value=1.1e-06 Score=79.46 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-|+|+.|++++++.+.+++.. ...++.....-++|+||||+|||+|+++|+..+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~------Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH------AAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH------HHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 367999999999999987732 11222334467899999999999999999986543
No 193
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.30 E-value=1e-06 Score=79.45 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=51.3
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+-++.++.+.+.+||.-...-.++++.++..... ...+.+-++|+||+||||||+++.+|+.++.-+
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 3467889999999999998878888877753211 112235678899999999999999999888733
No 194
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.29 E-value=5e-06 Score=66.24 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=58.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCC----cHH-HHhhccccc----cccC--------------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNI----DDA-FLRRLEKRI----YVPL-------------- 106 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l----~~~-l~~rf~~~i----~~~~-------------- 106 (217)
..+.-+.++|||||||||++|+|...-.+--+-.+-....+ +-. ++++...++ .||.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 45677999999999999999999885544221111111111 222 222333332 2333
Q ss_pred --CCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 107 --PSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 107 --p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
-..++-++....+|++.++.+ ........+||++-++++...+
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~-----ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLAD-----KADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchh-----hhhhCccccCcHHHHHHHHHHH
Confidence 234556666667777777642 2233446799999998876444
No 195
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=3.4e-06 Score=69.12 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=62.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhcccc--------------------------CCCCCCcHHHHh-hccccc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGAS--------------------------NFPWNIDDAFLR-RLEKRI 102 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t--------------------------~~~~~l~~~l~~-rf~~~i 102 (217)
.++.-+.|.||+|+|||||+|++.+++.+..+-.. +.|-++.+-+.. |+.+.-
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence 45567899999999999999999997765222111 111111122222 555555
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHH-HccCCCHHhHHHHHHHHHH
Q psy15622 103 YVPLPSSSGRQELLRLILRQVDLASDLDLELVSD-QLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 103 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~-~~~g~s~~di~~l~~~a~~ 155 (217)
.+..++..+ .+.+...|+..++. .++. ....+||++.+++....++
T Consensus 108 ~~~~~~~~d-~~~v~~aL~~Vgm~------~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 108 WFRRLNKKD-KEKVDEALERVGME------DLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred ccccccHHH-HHHHHHHHHHcCch------hhhCCcccccCcHHHHHHHHHHHh
Confidence 667777776 55667777776653 2333 3356999999988764443
No 196
>KOG1942|consensus
Probab=98.24 E-value=1.7e-05 Score=66.01 Aligned_cols=54 Identities=31% Similarity=0.421 Sum_probs=39.0
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-..++|+.+..+..--.+.. ...+ .-.++.+||.||||||||.+|-+|+++++.
T Consensus 37 ~~g~vGQ~~AReAagiivdl-ik~K------kmaGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDL-IKSK------KMAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ccccccchhhhhhhhHHHHH-HHhh------hccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 35578888887665444432 1111 134689999999999999999999998876
No 197
>PRK12377 putative replication protein; Provisional
Probab=98.24 E-value=2.4e-06 Score=70.27 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=42.1
Q ss_pred hhhhhcccc-cCCCCCCCcccc----hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 3 RLIKRDIIV-ERPDVQWSDIAN----QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~dl~g----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.+.++. ...+.+|+.... ...+...+..++.. +.....+++|+||||||||+||.+||+.+.
T Consensus 57 ~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~----------~~~~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 57 KILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE----------LMTGCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH----------HHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555553 446678888753 22234444444332 111236899999999999999999999774
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=5.5e-06 Score=69.36 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=44.5
Q ss_pred CcHHHHhhccccccccCCCH-HHHHHHHHHHHhhCCCC--CcccH----HHHHHHccCCCHHhHHHHHHHHHHHHHHHH
Q psy15622 90 IDDAFLRRLEKRIYVPLPSS-SGRQELLRLILRQVDLA--SDLDL----ELVSDQLEGYSASDIVVVCRDAAFMAMRAA 161 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~-~~r~~il~~~l~~~~~~--~~~~~----~~la~~~~g~s~~di~~l~~~a~~~a~~~~ 161 (217)
-|+.+.+||. .+.+|.... ++...++..+-..+++. +...- ..|-..+.|. -+++.+++..|+..|++.+
T Consensus 197 ~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 197 TDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred cCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcC
Confidence 3677888985 344455332 45667787777766653 22222 2344556665 4678888899988888765
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=1.5e-06 Score=80.00 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=50.9
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+..++.+.+++||+|.+..++.++..+..... ...+++.++|+||+||||||+++++|+.++..
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 56688999999999999999998887753111 01344569999999999999999999977653
No 200
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.22 E-value=1.6e-05 Score=73.05 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=29.9
Q ss_pred ccccCCCC---CCcHHHHhhccccccccC-CCHHHHHHHHHHHH
Q psy15622 81 CGASNFPW---NIDDAFLRRLEKRIYVPL-PSSSGRQELLRLIL 120 (217)
Q Consensus 81 ~~~t~~~~---~l~~~l~~rf~~~i~~~~-p~~~~r~~il~~~l 120 (217)
|+|+|..+ .+.++++.||...+.+.. |...+|.+|++..+
T Consensus 131 IAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 131 IATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred EEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHH
Confidence 36666554 688999999998776554 56677888887765
No 201
>PRK08118 topology modulation protein; Reviewed
Probab=98.21 E-value=3e-06 Score=65.59 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=45.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhcc---------------------------------ccCCCCCCcHHHHhhcc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCG---------------------------------ASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~---------------------------------~t~~~~~l~~~l~~rf~ 99 (217)
+.|+++|||||||||+|+.|+..++..++- ..+.+..++ ..+.+++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~~-~~l~~~d 80 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTMD-IRLNAAD 80 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHHH-HHHHhCC
Confidence 368999999999999999999977653220 001111111 1122567
Q ss_pred ccccccCCCHHHHHHHHHHHHhhC
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQV 123 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~ 123 (217)
.++++..|...-...+++..++..
T Consensus 81 ~vi~Ld~p~~~~~~R~~~R~~~~~ 104 (167)
T PRK08118 81 TIIFLDIPRTICLYRAFKRRVQYR 104 (167)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHc
Confidence 777887777776677777766543
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.19 E-value=1.1e-06 Score=63.77 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=23.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
|+|.|||||||||+|+.||..++..+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 78999999999999999999987654
No 203
>PRK07261 topology modulation protein; Provisional
Probab=98.19 E-value=3.5e-06 Score=65.39 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=46.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhcc-------------------------ccCCCCCCc--------HHHHhhccc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHCG-------------------------ASNFPWNID--------DAFLRRLEK 100 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~~-------------------------~t~~~~~l~--------~~l~~rf~~ 100 (217)
.|+++|+||+||||+++.|+..++...+- .....+-+| +..+.+++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~wIidg~~~~~~~~~~l~~ad~ 81 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHDWIIDGNYSWCLYEERMQEADQ 81 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCCEEEcCcchhhhHHHHHHHCCE
Confidence 48999999999999999999877652220 000111111 223337788
Q ss_pred cccccCCCHHHHHHHHHHHHh
Q psy15622 101 RIYVPLPSSSGRQELLRLILR 121 (217)
Q Consensus 101 ~i~~~~p~~~~r~~il~~~l~ 121 (217)
++.+..|.......+++..+.
T Consensus 82 vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 82 IIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred EEEEcCCHHHHHHHHHHHHHH
Confidence 888888888777777777665
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=3.6e-06 Score=61.95 Aligned_cols=42 Identities=50% Similarity=0.677 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 23 NQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 23 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
|.+.+.+.+...+.. .++..++++||||||||++++.+++.+
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 445555555555532 134689999999999999999999987
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=1.8e-06 Score=62.93 Aligned_cols=28 Identities=46% Similarity=0.694 Sum_probs=24.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+..++|+||||||||++++.+|..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4679999999999999999999977653
No 206
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.14 E-value=8.7e-06 Score=59.65 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.|.|+.-+.+.+...+...+..+ ..+-|--+.|+|++|||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47898888888888887555432 11122456789999999999999999964
No 207
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.14 E-value=6.6e-06 Score=64.74 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCC------------cHHHHhh------ccccccccCCCHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNI------------DDAFLRR------LEKRIYVPLPSSSG 111 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l------------~~~l~~r------f~~~i~~~~p~~~~ 111 (217)
.++..+.+.|||||||||+++.+|++..+.-...+-..-.+ +++++.. ...-+.+.--.+.+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~ 108 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ 108 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHH
Confidence 56788999999999999999999999887443222111111 2333331 12223344457889
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 112 RQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 112 r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
|+++...++...++..-. -+..-.+||+.-+++...
T Consensus 109 R~~~a~q~l~~VgL~~~~-----~~~i~qLSGGmrQRvGiA 144 (259)
T COG4525 109 RREIAHQMLALVGLEGAE-----HKYIWQLSGGMRQRVGIA 144 (259)
T ss_pred HHHHHHHHHHHhCccccc-----ccceEeecchHHHHHHHH
Confidence 999999999988874311 111224666666655543
No 208
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.11 E-value=4.2e-06 Score=73.43 Aligned_cols=60 Identities=30% Similarity=0.476 Sum_probs=40.5
Q ss_pred ccchHHHHHHHHHHHHhhcCChhh----h--hhhcCCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSY----F--QHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~----~--~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
++|+++.++.+...+......-.. . .+...+..++||+||||||||++|+++|..++..+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 699999999887666321111000 0 00111235799999999999999999999887543
No 209
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.10 E-value=1.9e-05 Score=61.79 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=24.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.++||||+||||++|.|.....+
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 45566899999999999999999987765
No 210
>PRK04132 replication factor C small subunit; Provisional
Probab=98.09 E-value=3.3e-05 Score=73.20 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=47.8
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccC
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG 140 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g 140 (217)
.++.+||.++.+.+++++|+ ..+.|+.|+.++....++..+++.++. ++..+..++..+.|
T Consensus 662 ~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 662 RFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred EEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 45588999999999999997 678899999988888888888765553 34456677776665
No 211
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=5.4e-06 Score=71.62 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++||++...
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 46678999999999999999999998765
No 212
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.07 E-value=4.8e-06 Score=67.15 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||||||||||++.++....+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45678999999999999999999987765
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.07 E-value=8.9e-06 Score=62.61 Aligned_cols=44 Identities=30% Similarity=0.347 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 23 NQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 23 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
|++++.+.|...+.. ++.+..+||+||+|+||+++|+++|+.+-
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 677888888877742 24457899999999999999999998553
No 214
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=98.06 E-value=4.5e-06 Score=72.89 Aligned_cols=62 Identities=27% Similarity=0.433 Sum_probs=49.3
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--hhccccCCCCC
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--VHCGASNFPWN 89 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--~~~~~t~~~~~ 89 (217)
+.-.++++|....+.+++.|.+.. +|+|+.||||.||||+|.|+|.|+.. .++-|..+|-+
T Consensus 240 Pvvk~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRD 302 (604)
T COG1855 240 PVVKLSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRD 302 (604)
T ss_pred eeEEechhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCccc
Confidence 334567888888888888888665 79999999999999999999999875 35566666654
Q ss_pred C
Q psy15622 90 I 90 (217)
Q Consensus 90 l 90 (217)
+
T Consensus 303 l 303 (604)
T COG1855 303 L 303 (604)
T ss_pred c
Confidence 4
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=1.9e-05 Score=67.68 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=30.5
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 117 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~ 117 (217)
+++.+|+.++.+-+.+++|+. .+.|+.|+.++..+.+.
T Consensus 140 ~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 140 WFFLACREPARLLATLRSRCR-LHYLAPPPEQYALTWLS 177 (334)
T ss_pred EEEEEECChhhChHHHHhccc-cccCCCCCHHHHHHHHH
Confidence 455888999999999999997 57888888876665554
No 216
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.04 E-value=0.00015 Score=68.92 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|||+|+||||||++|+++++
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~ 514 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHL 514 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHH
Confidence 4699999999999999999986
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.04 E-value=1.1e-05 Score=66.13 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=40.6
Q ss_pred hhhhcccc-cCCCCCCCcccc-hHHH---HHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 4 LIKRDIIV-ERPDVQWSDIAN-QVKA---KKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 4 ~~~~~~~~-~~~~~~~~dl~g-~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++++..+. ...+.+|+++.- .+.. ...+.+++.. ......+++|+|++|||||+|+.+||..+.
T Consensus 56 ~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~----------~~~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 56 TFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE----------FDGNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh----------hccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555544 346788988753 2333 3333333321 111125899999999999999999999774
No 218
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=2.4e-05 Score=66.73 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=29.5
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 118 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~ 118 (217)
.++.+|+.++.+.+.+++|+. .+.|+.|+.++..+.+..
T Consensus 139 ~fiL~t~~~~~llpTI~SRC~-~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 139 YFLLQADLSAALLPTIYSRCQ-TWLIHPPEEQQALDWLQA 177 (325)
T ss_pred EEEEEECChHhCchHHHhhce-EEeCCCCCHHHHHHHHHH
Confidence 444788899999999999985 567777777766655554
No 219
>KOG0064|consensus
Probab=98.03 E-value=1.5e-05 Score=71.02 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.|+.++|+.||+|||||+|-|.+++.|+.
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 57888999999999999999999999986
No 220
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.99 E-value=1.1e-05 Score=67.33 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=25.0
Q ss_pred cccCCCC---CCcHHHHhhccccccccCCCHHHHHHHHHHHHhh
Q psy15622 82 GASNFPW---NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 122 (217)
Q Consensus 82 ~~t~~~~---~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~ 122 (217)
|+++.+. .+++.++|.| .++.++.|+.+....|+..++..
T Consensus 153 aa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 153 AAMNPTGGRNPISPRFLRHF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEESSTTT--SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHH
T ss_pred EecCCCCCCCCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhh
Confidence 5555322 3677777776 47889999998888888887754
No 221
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.99 E-value=3.3e-05 Score=66.94 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=67.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhcccc---CCCCCCcH----HHHhhccccc--------------------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGAS---NFPWNIDD----AFLRRLEKRI-------------------- 102 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t---~~~~~l~~----~l~~rf~~~i-------------------- 102 (217)
+++..+-++|.|||||||+.+++.+.+... +... ...+.++. .++++++.++
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EG 389 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEG 389 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhh
Confidence 567889999999999999999999977642 1111 11111221 2223443333
Q ss_pred ---cccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 103 ---YVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 103 ---~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
+=|.++..+|.+-....+...++++ ....+..+.|||++-+++....+
T Consensus 390 L~vh~~~ls~~eR~~rv~~aL~EVGLDp----~~r~RYPhEFSGGQRQRIAIARA 440 (534)
T COG4172 390 LRVHEPKLSAAERDQRVIEALEEVGLDP----ATRNRYPHEFSGGQRQRIAIARA 440 (534)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHcCCCh----hHhhcCCcccCcchhhHHHHHHH
Confidence 3344677888888888888888754 45667778999999988875444
No 222
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.99 E-value=0.00015 Score=67.15 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-.|.|++++|+.+.-.+. -..++...+.. +.--+|||.|-||+|||.|.+.+++..+.
T Consensus 286 PsIyG~e~VKkAilLqLf--gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr 345 (682)
T COG1241 286 PSIYGHEDVKKAILLQLF--GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR 345 (682)
T ss_pred ccccCcHHHHHHHHHHhc--CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc
Confidence 346788888777764432 22222222211 12235999999999999999999986654
No 223
>PRK08116 hypothetical protein; Validated
Probab=97.99 E-value=1.3e-05 Score=66.66 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=40.7
Q ss_pred hhhhcccc-cCCCCCCCcccchHHH---HHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 4 LIKRDIIV-ERPDVQWSDIANQVKA---KKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 4 ~~~~~~~~-~~~~~~~~dl~g~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.+.+++. .....+|++..-.... .....+++.. +......+.+++|+|++|||||+||.++++.+.
T Consensus 69 l~~~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 69 LKSNSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEMKKENVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred HHHhcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhhccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444443 4455777776533332 3334444422 111222346799999999999999999999763
No 224
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.98 E-value=6.1e-06 Score=63.47 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=27.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++..++|+|+|||||||+++.+|..++..++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4568999999999999999999999886554
No 225
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.98 E-value=9.7e-06 Score=69.79 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++...+
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46677999999999999999999998765
No 226
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=8e-06 Score=72.68 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=34.7
Q ss_pred hhcCChhhhhhhc---CCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 37 LPLEKPSYFQHIR---KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 37 ~~~~~~~~~~~~~---~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+|-+.+...++++ .+++.|.+.|++||||||++..+++.+.+.-
T Consensus 346 y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~ 392 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392 (573)
T ss_pred cCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 3444445556555 7889999999999999999999999887643
No 227
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=2e-05 Score=67.70 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=30.8
Q ss_pred hccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHH
Q psy15622 80 HCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 118 (217)
Q Consensus 80 ~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~ 118 (217)
++.+|++++.+.+.+++|+ ..+.|+.|+.++..+.+..
T Consensus 165 fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 165 FLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 3378889999999999999 5788888888877776654
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=3.5e-05 Score=65.60 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=30.3
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 117 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~ 117 (217)
+++..|+.++.+-+.+++|+. .+.|+.|+.++..+.+.
T Consensus 140 ~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLK 177 (319)
T ss_pred EEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHH
Confidence 455888999999999999995 67888888877666554
No 229
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.97 E-value=1.7e-05 Score=62.05 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=48.8
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhcc---------------------ccCCCCCCcHHHH-----hhcc------cc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHCG---------------------ASNFPWNIDDAFL-----RRLE------KR 101 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~~---------------------~t~~~~~l~~~l~-----~rf~------~~ 101 (217)
.|+|.||||+||||+|+.||..++...+. .......++..+. .|+. ..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~ 81 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF 81 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence 58999999999999999999987763220 0111222333222 1332 46
Q ss_pred ccccCCCHHHHHHHHHHHHhhCC
Q psy15622 102 IYVPLPSSSGRQELLRLILRQVD 124 (217)
Q Consensus 102 i~~~~p~~~~r~~il~~~l~~~~ 124 (217)
|....|..-...+.++.++...+
T Consensus 82 I~dg~PR~~~qa~~l~r~l~~~g 104 (178)
T COG0563 82 ILDGFPRTLCQARALKRLLKELG 104 (178)
T ss_pred EEeCCCCcHHHHHHHHHHHHHcC
Confidence 78888998888889998887755
No 230
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.96 E-value=2.7e-05 Score=67.35 Aligned_cols=29 Identities=38% Similarity=0.476 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++||++..+
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 46678999999999999999999998765
No 231
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=4.2e-05 Score=61.04 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999997754
No 232
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.94 E-value=8.6e-06 Score=63.28 Aligned_cols=27 Identities=48% Similarity=0.683 Sum_probs=24.2
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
|-..++|+||+|||||.+|+++|..+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 556799999999999999999999887
No 233
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=3e-05 Score=67.12 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++||+....
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 45677899999999999999999998765
No 234
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.94 E-value=5.8e-06 Score=61.61 Aligned_cols=26 Identities=42% Similarity=0.769 Sum_probs=22.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
++++|||||||||+++.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 78999999999999999998887433
No 235
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=2.8e-05 Score=67.76 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++||++...
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p 71 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 46677999999999999999999998755
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.93 E-value=1.4e-05 Score=62.55 Aligned_cols=27 Identities=44% Similarity=0.591 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.+++|+||+|+|||+||.+++..+-
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 357899999999999999999998553
No 237
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.92 E-value=7.8e-06 Score=74.24 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=27.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|+||+||||||+++.+++++.+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 677889999999999999999999988763
No 238
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.91 E-value=4.7e-05 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998764
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.91 E-value=1.1e-05 Score=68.33 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++++|+||+|+|||+|+.|+|+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999999774
No 240
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.91 E-value=4.4e-05 Score=61.22 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 56678999999999999999999998764
No 241
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.91 E-value=1.5e-05 Score=61.79 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++|-++..+.+...+.. . ....+..++|+|++|+|||++++.+...+..
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57888888888877731 1 1123478999999999999999998876654
No 242
>PTZ00202 tuzin; Provisional
Probab=97.89 E-value=0.00011 Score=64.81 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+....+++|-+.....|...+... +. ..+.-+.|+||+||||||+++.+...++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~--------d~-~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRL--------DT-AHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhcc--------CC-CCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344678999999999998777420 11 1235788999999999999999998776
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=3.4e-05 Score=65.91 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.+..+||+||+|+|||++|+.+|+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 556789999999999999999999854
No 244
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=6.5e-05 Score=63.99 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=28.4
Q ss_pred hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHH
Q psy15622 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 117 (217)
Q Consensus 79 ~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~ 117 (217)
.++.+++.++.+-+.+++|+. .+.|+.|+.++..+.+.
T Consensus 145 ~fiL~~~~~~~lLpTIrSRCq-~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 145 YLWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLL 182 (319)
T ss_pred eEEEEECChhhCchHHHhhhe-EeeCCCcCHHHHHHHHH
Confidence 344778889999999999984 56777788776665554
No 245
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=4.9e-05 Score=61.11 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997654
No 246
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.88 E-value=4e-05 Score=66.80 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++||++...
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45677999999999999999999998765
No 247
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=4.2e-05 Score=64.00 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.++-+.|.||||+||||++|+||+...+
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCCC
Confidence 45678999999999999999999997765
No 248
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.88 E-value=8.1e-05 Score=59.69 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 46678999999999999999999998754
No 249
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.86 E-value=6.3e-05 Score=60.10 Aligned_cols=29 Identities=31% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999998754
No 250
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.85 E-value=5.5e-05 Score=61.56 Aligned_cols=29 Identities=31% Similarity=0.553 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56788999999999999999999997754
No 251
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.85 E-value=5e-05 Score=66.07 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45677999999999999999999998754
No 252
>KOG0480|consensus
Probab=97.84 E-value=0.00017 Score=65.52 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhh-hhc-CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQ-HIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+-.|.|.+.+|.-+.-.+.- ..++.-. +.. +.--+|+++|.||+|||-++++.+++.+.
T Consensus 344 ~PsIyGhe~VK~GilL~LfG--Gv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR 404 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFG--GVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR 404 (764)
T ss_pred CccccchHHHHhhHHHHHhC--CccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc
Confidence 34578888888877654431 1111111 111 22235999999999999999999997776
No 253
>KOG1514|consensus
Probab=97.84 E-value=0.00031 Score=64.53 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=70.3
Q ss_pred hccccCCCCCCcHHHHh-----hcc-ccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCH--HhHHHHHH
Q psy15622 80 HCGASNFPWNIDDAFLR-----RLE-KRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSA--SDIVVVCR 151 (217)
Q Consensus 80 ~~~~t~~~~~l~~~l~~-----rf~-~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~--~di~~l~~ 151 (217)
+++..|..+ +++.++. |++ ..+.|.+-+.++..+|+...+.....-.....+-+|+.-...|| +....+|+
T Consensus 544 vi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 544 VIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 335555555 3433332 554 44778888999999999998876633222233344454444444 22346777
Q ss_pred HHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15622 152 DAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEE 208 (217)
Q Consensus 152 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~ 208 (217)
+|...|-.+.... .....-.|+..|+.+|+..+.-+..-.-+.++..
T Consensus 623 RA~Eia~~~~~~~----------k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~ 669 (767)
T KOG1514|consen 623 RAAEIAEERNVKG----------KLAVSQLVGILHVMEAINEMLASPYIKALKGLSF 669 (767)
T ss_pred HHHHHhhhhcccc----------cccccceeehHHHHHHHHHHhhhhHHHHhcchHH
Confidence 7877776665311 1223456899999999999875544444444433
No 254
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=6.4e-05 Score=64.34 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.|++|||||||+++|++.+..
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 56788999999999999999999998754
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.82 E-value=3.8e-05 Score=57.65 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=49.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch-----------------------------------------hhccccCCCCCCc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ-----------------------------------------VHCGASNFPWNID 91 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~-----------------------------------------~~~~~t~~~~~l~ 91 (217)
+.++|.||+|||||||+++|-+.-.. ++..++......+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p 81 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP 81 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC
Confidence 46899999999999999999761111 2224555555678
Q ss_pred HHHHhhccccc-----cccCCCHHHHHHHHHHHHhhCCCC
Q psy15622 92 DAFLRRLEKRI-----YVPLPSSSGRQELLRLILRQVDLA 126 (217)
Q Consensus 92 ~~l~~rf~~~i-----~~~~p~~~~r~~il~~~l~~~~~~ 126 (217)
|.+.+-|.+.+ .+..+..+...+..+.+|+..+..
T Consensus 82 P~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~ 121 (143)
T PF10662_consen 82 PGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK 121 (143)
T ss_pred chhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC
Confidence 88887554332 355564456666777777776654
No 256
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.82 E-value=7.6e-05 Score=58.64 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997764
No 257
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.82 E-value=4.2e-05 Score=65.54 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.|+||||||||+++|++.+..
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 56678999999999999999999998864
No 258
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.82 E-value=5.6e-05 Score=65.55 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+|||||||+++|++....
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 46678999999999999999999998865
No 259
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=5e-05 Score=64.98 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=25.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|||||||+++|++.+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 5667799999999999999999999875
No 260
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=9.2e-05 Score=59.53 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997754
No 261
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.81 E-value=0.0001 Score=58.86 Aligned_cols=29 Identities=34% Similarity=0.498 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46677999999999999999999998764
No 262
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.81 E-value=1.6e-05 Score=62.03 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=24.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
|+++|||||||||+++.||..++...+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 689999999999999999999986544
No 263
>KOG0060|consensus
Probab=97.81 E-value=2e-05 Score=70.67 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=25.9
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+..+|++||+|||||+|.|.+|+.|+..
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlggLWp~~ 488 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSLLRVLGGLWPST 488 (659)
T ss_pred CCCeEEEECCCCCchhHHHHHHhcccccC
Confidence 45679999999999999999999999853
No 264
>PRK03839 putative kinase; Provisional
Probab=97.81 E-value=1.6e-05 Score=61.94 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|.|+|||||||+++.+|+.++..++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~i 29 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999887554
No 265
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=7.7e-05 Score=59.55 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++ .+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 355 7889999999999999999998764
No 266
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.80 E-value=1.9e-05 Score=67.65 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.|++|||||||+++|++.+..
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 56678999999999999999999998754
No 267
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.80 E-value=7.9e-05 Score=59.53 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999997754
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.79 E-value=1.7e-05 Score=56.65 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=21.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
|.|+||||+|||++++.|+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999877643
No 269
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.79 E-value=9.4e-05 Score=63.98 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|+++...
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998765
No 270
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=9.3e-05 Score=59.17 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997754
No 271
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.79 E-value=1.4e-05 Score=61.21 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+++.||+||||||+++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999886554
No 272
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.78 E-value=0.0001 Score=59.67 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999997754
No 273
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=1.3e-05 Score=65.44 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.++..++|.|++||||||+++.+++.+....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~ 58 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcCcCCC
Confidence 4567899999999999999999999887643
No 274
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.77 E-value=2e-05 Score=59.42 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.7
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|+|+|||||||+++.+|..++..++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3789999999999999999999886554
No 275
>PRK13949 shikimate kinase; Provisional
Probab=97.77 E-value=2.2e-05 Score=60.85 Aligned_cols=30 Identities=33% Similarity=0.408 Sum_probs=26.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhcc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCG 82 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~ 82 (217)
+.|+|+|+||+||||+++.+|+.++..++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 368999999999999999999999865543
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.77 E-value=4.8e-05 Score=65.08 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=23.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..+++|+||+|+|||+|+.+||+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999999999999976
No 277
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.77 E-value=6.3e-05 Score=62.14 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.+++|+||||+|||+||-||++.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 48899999999999999999999765
No 278
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.77 E-value=0.00013 Score=58.62 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998764
No 279
>PRK14532 adenylate kinase; Provisional
Probab=97.76 E-value=1.9e-05 Score=61.94 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=25.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.++|.|||||||||+++.||..++...+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4899999999999999999999887554
No 280
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=0.00011 Score=62.95 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|||||||+++|++...
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 5667899999999999999999999874
No 281
>PRK14531 adenylate kinase; Provisional
Probab=97.76 E-value=2.5e-05 Score=61.23 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=25.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..++++|||||||||+++.||..++...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 46999999999999999999999886543
No 282
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.75 E-value=3.4e-05 Score=71.00 Aligned_cols=29 Identities=38% Similarity=0.690 Sum_probs=26.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.|++|||||||++.+++++.+
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 67788999999999999999999998876
No 283
>PRK13947 shikimate kinase; Provisional
Probab=97.75 E-value=2.3e-05 Score=60.37 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=26.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhcc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHCG 82 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~~ 82 (217)
.|+|.|+|||||||+++.+|..++..++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999886653
No 284
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=0.00012 Score=59.42 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=26.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57788999999999999999999998765
No 285
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.75 E-value=3e-05 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.+.|+||+||||++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 286
>KOG2680|consensus
Probab=97.75 E-value=0.00048 Score=57.71 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 86 FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 86 ~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
.|+.++-.++.|.- .|...+-+.++..+|++.-+..-... .+..++.|......-|-+---.+...|.+.|.+|.
T Consensus 338 SphGiP~D~lDR~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--- 413 (454)
T KOG2680|consen 338 SPHGIPIDLLDRML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--- 413 (454)
T ss_pred CCCCCcHHHhhhhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc---
Confidence 56788889988873 44444447778888888766544332 22234445554444444555566667777777775
Q ss_pred CCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 165 KSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 165 ~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...++.+|+..+.+-+.
T Consensus 414 --------------~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 414 --------------GKVVEVDDIERVYRLFL 430 (454)
T ss_pred --------------CceeehhHHHHHHHHHh
Confidence 55688899999988775
No 287
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.75 E-value=2.5e-05 Score=56.79 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~ 76 (217)
|+|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 288
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.74 E-value=0.00022 Score=62.20 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=40.0
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.+..+++|+|.+..-+.+++.+.. ....+..||++|++|+||+.+|++|..
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~ 123 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHA 123 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHH
Confidence 456778899998888888877753 111236799999999999999999963
No 289
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00014 Score=59.22 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997754
No 290
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.74 E-value=3e-05 Score=60.26 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++-++|.|+||+||||+++.++..++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 456899999999999999999998753
No 291
>KOG0478|consensus
Probab=97.74 E-value=0.00046 Score=63.21 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.|.|++++|+-|.-.+. -.....+...+ +..-.|||+|-||+|||-+++.+.+....
T Consensus 430 sIye~edvKkglLLqLf--GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR 488 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF--GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR 488 (804)
T ss_pred hhhcccchhhhHHHHHh--cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc
Confidence 35677777777664332 22222222221 22246999999999999999999986654
No 292
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.74 E-value=0.00012 Score=63.61 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++.-+.|.||+|||||||+++||++....
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 456779999999999999999999987543
No 293
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.73 E-value=5.3e-05 Score=69.72 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.+++.+.|.||+|||||||++.|++++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 677889999999999999999999998
No 294
>PRK14530 adenylate kinase; Provisional
Probab=97.73 E-value=2.7e-05 Score=62.51 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..|+|.|||||||||+++.||..++...+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46999999999999999999999987544
No 295
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.73 E-value=2.9e-05 Score=61.65 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-++|.|||||||||+++.+++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999999875
No 296
>PRK10908 cell division protein FtsE; Provisional
Probab=97.73 E-value=0.00014 Score=58.63 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999998764
No 297
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.3e-05 Score=64.89 Aligned_cols=29 Identities=38% Similarity=0.754 Sum_probs=25.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..|||.||.|||||.||+.+|+.++..+.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 46999999999999999999999997543
No 298
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00015 Score=60.33 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56678999999999999999999998764
No 299
>PRK06526 transposase; Provisional
Probab=97.72 E-value=2.7e-05 Score=64.28 Aligned_cols=25 Identities=48% Similarity=0.740 Sum_probs=22.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.+++|+||||||||+|+.+|+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4689999999999999999998755
No 300
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.72 E-value=3.5e-05 Score=56.45 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=20.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.++++||+|+|||++++.++..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 35689999999999999999999774
No 301
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00013 Score=60.87 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYLP 57 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56788999999999999999999997754
No 302
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.72 E-value=4.1e-05 Score=60.16 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.+..++|.||+|+||||+++++++++..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34678999999999999999999998764
No 303
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00018 Score=58.67 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999997764
No 304
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.72 E-value=2.8e-05 Score=60.62 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-+++.|||||||||+++.++..++...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35889999999999999999988875443
No 305
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.70 E-value=0.00033 Score=60.06 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=30.9
Q ss_pred ccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
|+|.+...+.+.+.+... ......|+|+|++||||+++|++|-.
T Consensus 1 liG~S~~m~~~~~~~~~~----------a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----------APLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCChHHHHHHHHHH
Confidence 456666666666555421 12336699999999999999999954
No 306
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.70 E-value=2.6e-05 Score=58.79 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.6
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++|+|+||+||||+++.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999998875443
No 307
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.70 E-value=3.3e-05 Score=55.15 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVA 73 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia 73 (217)
.+++.+.|.||||||||||++++.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345789999999999999999987
No 308
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.70 E-value=0.00021 Score=58.54 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 46678999999999999999999998753
No 309
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.70 E-value=0.00013 Score=61.48 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++.-+.|.||+|+||||+.++|++.....
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 456679999999999999999999988763
No 310
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.70 E-value=0.00017 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQP 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57788999999999999999999997754
No 311
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00018 Score=60.54 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..++.+-|.|.||||||+++++|.+.++
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4567899999999999999999999997
No 312
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.69 E-value=3.4e-05 Score=59.94 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.-++|.|||||||||++++|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999775
No 313
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.69 E-value=5.2e-05 Score=71.40 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=27.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+|++.+.|+||+|+||||+++.|++++.+.
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 678889999999999999999999998763
No 314
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.69 E-value=2.7e-05 Score=61.10 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..++|.|||||||||+++.|+..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 56899999999999999999998764
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.69 E-value=7.5e-05 Score=58.27 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+||||++++|++.+..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998754
No 316
>PRK06762 hypothetical protein; Provisional
Probab=97.69 E-value=3.8e-05 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.-++|+|+|||||||+|+.++..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999884
No 317
>PRK06217 hypothetical protein; Validated
Probab=97.68 E-value=3.1e-05 Score=60.65 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|.|+|||||||++++|+..++..++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 5899999999999999999999886543
No 318
>PRK08181 transposase; Validated
Probab=97.68 E-value=3.4e-05 Score=64.19 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.7
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.+++|+||+|||||+|+.+++..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999855
No 319
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00024 Score=56.71 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999997754
No 320
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.68 E-value=4.1e-05 Score=59.76 Aligned_cols=30 Identities=17% Similarity=0.484 Sum_probs=25.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++.+.++||+||||||+++++++.++...+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999876433
No 321
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.67 E-value=4.5e-05 Score=71.45 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=27.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|.||+|||||||++.+++++.+.
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 506 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 678889999999999999999999998763
No 322
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00018 Score=59.71 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 67788999999999999999999997754
No 323
>PHA00729 NTP-binding motif containing protein
Probab=97.67 E-value=3.7e-05 Score=62.09 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..++|+|+||+|||++|.+++..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998764
No 324
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00018 Score=57.89 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.--.|.||+|+|||||+.+|++.-.+
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 45677899999999999999999985443
No 325
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=4.5e-05 Score=59.22 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-++|.|+|||||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457799999999999999999999886
No 326
>KOG1970|consensus
Probab=97.67 E-value=5.1e-05 Score=67.79 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=42.7
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
++.++.+.+.++|.-...=+++++.++.. . ...... ...+-+||+||+||||||.++.|++.+++.+
T Consensus 72 W~eKy~P~t~eeLAVHkkKI~eVk~WL~~-~--~~~~~~--l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 72 WVEKYKPRTLEELAVHKKKISEVKQWLKQ-V--AEFTPK--LGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred hHHhcCcccHHHHhhhHHhHHHHHHHHHH-H--HHhccC--CCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 45667777777776655444444444420 0 000001 1235688899999999999999999998743
No 327
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.67 E-value=0.00019 Score=54.34 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhcccc------CCCCCCcHHHHh----hccccccccC-----------CC
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGAS------NFPWNIDDAFLR----RLEKRIYVPL-----------PS 108 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t------~~~~~l~~~l~~----rf~~~i~~~~-----------p~ 108 (217)
.++.-+-|+||||||||||..-+++++...+-.+- .+.+.++ +-.| -|+.-+.||. |.
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP-a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~ 104 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-AAQRQIGILFQDALLFPHLSVGQNLLFALPA 104 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-hhhhheeeeecccccccccccccceEEecCc
Confidence 45667889999999999999999998876432211 1222232 2222 3333333332 22
Q ss_pred ---HHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHH
Q psy15622 109 ---SSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 109 ---~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a 157 (217)
-+.|+......+.+.+++.-. .+..+.+||++-.++.-..++.+
T Consensus 105 ~~KG~aRr~~a~aAL~~~gL~g~f-----~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 105 TLKGNARRNAANAALERSGLDGAF-----HQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred ccccHHHHhhHHHHHHHhccchhh-----hcChhhcCcchHHHHHHHHHHHh
Confidence 257888888888887765321 12223578888776665554444
No 328
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.66 E-value=0.0002 Score=60.61 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998765
No 329
>PRK06547 hypothetical protein; Provisional
Probab=97.66 E-value=4.6e-05 Score=59.24 Aligned_cols=31 Identities=35% Similarity=0.310 Sum_probs=25.9
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++..|++.|++||||||+++.++..++..++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4467889999999999999999998775443
No 330
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00013 Score=65.73 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.+++.+.|+|+|||||||++..|++++...-
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~ 375 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 5677899999999999999999999998533
No 331
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.66 E-value=4.1e-05 Score=62.28 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..++|.|||||||||+++.||..++...+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 45999999999999999999999987555
No 332
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00028 Score=58.56 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|+|||||+++|++.+.
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5678899999999999999999999874
No 333
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.66 E-value=5.2e-05 Score=56.38 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-++|.|+.|+||||+++.+++.++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35567999999999999999999999874
No 334
>PRK09183 transposase/IS protein; Provisional
Probab=97.65 E-value=4.2e-05 Score=63.36 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.+..++|+||||||||+|+.+++..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998764
No 335
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00025 Score=58.97 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999998764
No 336
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.65 E-value=3.6e-05 Score=60.36 Aligned_cols=27 Identities=41% Similarity=0.756 Sum_probs=24.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
|+|+|||||||||+++.||..++...+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 789999999999999999999876544
No 337
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.65 E-value=7e-05 Score=68.83 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|.||+|+||||+++.+++++.+.
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 577889999999999999999999988763
No 338
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00022 Score=59.65 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56788999999999999999999998764
No 339
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.65 E-value=4.6e-05 Score=60.83 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.-+.|.||+||||||++++|++.++.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345788999999999999999998863
No 340
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.64 E-value=8.4e-05 Score=67.54 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=27.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|+||+|||||||++.|++++.+.
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 375 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPT 375 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 677889999999999999999999988763
No 341
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.00019 Score=62.05 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p 50 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRP 50 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678999999999999999999998764
No 342
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.63 E-value=0.00024 Score=56.09 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=25.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..+.|.||+|+|||||+++|++.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567889999999999999999999988
No 343
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.63 E-value=4.6e-05 Score=56.89 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhccc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGA 83 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~~~ 83 (217)
|++.|+|||||||+++.||..++..++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 68999999999999999999998766544
No 344
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.63 E-value=2.5e-05 Score=57.83 Aligned_cols=29 Identities=45% Similarity=0.604 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|+||+|||||||+++|++.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 45678999999999999999999998765
No 345
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.63 E-value=4.6e-05 Score=60.90 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=24.6
Q ss_pred hhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 42 PSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 42 ~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
|+.+..-. .++.++|+|||||||||+++++...
T Consensus 4 ~~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 4 PWLFNKPA-KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccccCCCC-CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 44444322 3466889999999999999999864
No 346
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.62 E-value=4.1e-05 Score=58.34 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
|.+.|||||||||+++.||..++..++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee
Confidence 678999999999999999999988655
No 347
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00018 Score=59.36 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997754
No 348
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.62 E-value=0.00011 Score=69.20 Aligned_cols=30 Identities=40% Similarity=0.603 Sum_probs=27.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.++||+|||||||++.|++++.+.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 677889999999999999999999988763
No 349
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.0002 Score=62.89 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p 80 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 56677999999999999999999998765
No 350
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00022 Score=61.49 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 56677999999999999999999998764
No 351
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00029 Score=59.12 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999997764
No 352
>PRK06921 hypothetical protein; Provisional
Probab=97.61 E-value=5.1e-05 Score=63.09 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..+++|+||+|+|||+|+.+||+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 47899999999999999999999763
No 353
>PRK14527 adenylate kinase; Provisional
Probab=97.61 E-value=5.9e-05 Score=59.41 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+.-++++||||+||||+++.++..++...
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 46799999999999999999998887543
No 354
>PLN02200 adenylate kinase family protein
Probab=97.61 E-value=5.5e-05 Score=61.74 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+.-+++.|||||||||+++.||..++...+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 356889999999999999999998886443
No 355
>PRK00625 shikimate kinase; Provisional
Probab=97.61 E-value=5e-05 Score=59.11 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|+|.|||||||+++.+|..++..++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~i 29 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFF 29 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999999886554
No 356
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.60 E-value=0.00017 Score=56.32 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.++-+.+.||||+|||||...||+|..+..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~ 53 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPAS 53 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCC
Confidence 456799999999999999999999887643
No 357
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.60 E-value=0.00015 Score=62.01 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+++.|+++.++++.+++.. .-++++...+-++|.||.|+||||+++.|.+.+..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~------AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKS------AAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHH------HHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 4899999999999887642 22223333356888999999999999999986654
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=97.60 E-value=7.6e-05 Score=50.05 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=18.3
Q ss_pred ceEEEecCCCCcHH-HHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKT-MLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKT-tla~aia~~~ 76 (217)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34666999999999 6666666665
No 359
>PRK02496 adk adenylate kinase; Provisional
Probab=97.60 E-value=5.4e-05 Score=59.18 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.4
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++|.|||||||||+++.|+..++..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~ 28 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP 28 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48999999999999999999988753
No 360
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.59 E-value=0.00016 Score=66.46 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|.||+|+|||||++.|++.+.+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 577889999999999999999999988763
No 361
>PRK13948 shikimate kinase; Provisional
Probab=97.59 E-value=6.3e-05 Score=59.01 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=28.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.++..|+|.|.+||||||+++.+|+.++..++
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 45688999999999999999999999887654
No 362
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.59 E-value=4.9e-05 Score=60.82 Aligned_cols=28 Identities=39% Similarity=0.724 Sum_probs=24.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHhchhhcc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCG 82 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~~~~~ 82 (217)
|+|+|||||||||+++.||..++...+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999988865543
No 363
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.59 E-value=0.00011 Score=67.69 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=27.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|.|++|||||||++.+++++.+.
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~ 394 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLT 394 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 677889999999999999999999988763
No 364
>PRK14528 adenylate kinase; Provisional
Probab=97.59 E-value=6e-05 Score=59.26 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=24.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+.+++.||||+||||+++.++..++...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 35899999999999999999998876443
No 365
>PRK08233 hypothetical protein; Provisional
Probab=97.58 E-value=5.3e-05 Score=58.76 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.-|.+.|+||+||||+++.|+..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999999886
No 366
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.58 E-value=0.00025 Score=59.94 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+||||++++|++.+.+
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999997764
No 367
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00034 Score=56.87 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+||||++++|++.+.+
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p 51 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56788999999999999999999997665
No 368
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00022 Score=59.48 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57788999999999999999999997754
No 369
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00028 Score=59.29 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 46678999999999999999999998765
No 370
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.57 E-value=0.00013 Score=60.53 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=38.3
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..++++++-..+..+.+.+.+.. +...++|.||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 45677888777777777666531 334589999999999999999987764
No 371
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.57 E-value=0.00011 Score=56.82 Aligned_cols=46 Identities=30% Similarity=0.324 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
|+|.+...+.+.+.+.... ..+..|+|+|++||||+++|++|-...
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4666666666666664311 233679999999999999999998743
No 372
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00026 Score=59.41 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56778999999999999999999998765
No 373
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.56 E-value=6.4e-05 Score=59.38 Aligned_cols=24 Identities=46% Similarity=0.769 Sum_probs=22.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHhch
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
|.|.|||||||||+|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999999974
No 374
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.56 E-value=6.9e-05 Score=58.20 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=25.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..|+|.|++|+||||+++.+|+.++..++
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 56999999999999999999999876554
No 375
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.56 E-value=7.8e-05 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=23.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.-|.|.|+|||||||++++|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999884
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.55 E-value=5.4e-05 Score=61.77 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56678999999999999999999998754
No 377
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.55 E-value=5.5e-05 Score=60.43 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998764
No 378
>PRK04040 adenylate kinase; Provisional
Probab=97.55 E-value=7.6e-05 Score=58.85 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..++++|+|||||||+++.++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999999984
No 379
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00035 Score=58.42 Aligned_cols=29 Identities=31% Similarity=0.301 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56678999999999999999999998765
No 380
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.55 E-value=0.0005 Score=55.79 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..++-+.+.|||||||||+.|.|.+.+.+
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P 60 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRP 60 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCC
Confidence 34566889999999999999999998876
No 381
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00044 Score=57.84 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998765
No 382
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.55 E-value=7e-05 Score=60.14 Aligned_cols=29 Identities=38% Similarity=0.666 Sum_probs=25.6
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhcc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHCG 82 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~~ 82 (217)
.|+++||||+||||+++.||..++...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999875553
No 383
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.55 E-value=0.00019 Score=65.83 Aligned_cols=30 Identities=33% Similarity=0.621 Sum_probs=27.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+|++.+++.||+|+|||||++.|++.+.+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~ 393 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 678889999999999999999999988763
No 384
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.54 E-value=5.7e-05 Score=58.66 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+-++|.||+||||||+++.|++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc
Confidence 458999999999999999999976543
No 385
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.54 E-value=0.00025 Score=63.92 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=60.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhh---cccc----CCCCCCcHHHHh-----hccccccccC----C------
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH---CGAS----NFPWNIDDAFLR-----RLEKRIYVPL----P------ 107 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~---~~~t----~~~~~l~~~l~~-----rf~~~i~~~~----p------ 107 (217)
.+++.+-|.|.|||||||++++|.+.+.... -+.. .....++..-.+ ++..++.-|. |
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~ 112 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD 112 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHH
Confidence 5778899999999999999999999876531 0110 012223332222 1111111111 1
Q ss_pred ------------CHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHH
Q psy15622 108 ------------SSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAF 155 (217)
Q Consensus 108 ------------~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 155 (217)
+.++.++....+++..++.+...- .+..+.+||++-++++...++
T Consensus 113 Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmAL 169 (539)
T COG1123 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMAL 169 (539)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHH
Confidence 144455555566666776543221 456789999999988764443
No 386
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.54 E-value=5.7e-05 Score=60.07 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46678999999999999999999998764
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00013 Score=57.94 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-++|+|+||+||||+++-+|+.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4889999999999999999986654
No 388
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.53 E-value=0.0001 Score=47.25 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.6
Q ss_pred eEEEecCCCCcHHHHHHHHHHHh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..+|+||+|+||||++.|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999997654
No 389
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=5.9e-05 Score=61.15 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999998765
No 390
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=5.8e-05 Score=61.34 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998764
No 391
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.53 E-value=6.5e-05 Score=58.68 Aligned_cols=29 Identities=38% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||++.|++.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 45678999999999999999999998764
No 392
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.52 E-value=7.9e-05 Score=58.94 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.|.||+||||||++++|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 393
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.52 E-value=5.7e-05 Score=60.71 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999998764
No 394
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.52 E-value=0.0004 Score=63.69 Aligned_cols=29 Identities=38% Similarity=0.706 Sum_probs=27.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|+||+||||||+++.+++++++
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 67788999999999999999999999987
No 395
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.51 E-value=6.5e-05 Score=59.68 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46678999999999999999999998764
No 396
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.51 E-value=0.00011 Score=61.02 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
....++++++-.....+.+.+++.... +....+++.||+||||||+++++..+++..
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 345678888777666666666654311 124779999999999999999999987764
No 397
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=6.8e-05 Score=58.59 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.+.||+|+|||||+|.||+.+.+
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCC
Confidence 67788999999999999999999998876
No 398
>PHA02624 large T antigen; Provisional
Probab=97.51 E-value=0.00011 Score=66.80 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.++|+||+||||||++.+|+++++.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999999999843
No 399
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00013 Score=61.83 Aligned_cols=61 Identities=30% Similarity=0.350 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 21 IANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 21 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
|+|+++.|..+-=.+..--...++-..+. -.|+.+|..||.|+|||-+||.+|+..+..++
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 78999988877544432222122222222 34689999999999999999999998887655
No 400
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.51 E-value=7e-05 Score=59.16 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56788999999999999999999998764
No 401
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.51 E-value=6.5e-05 Score=57.74 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||++.|++....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57788999999999999999999998764
No 402
>PRK14526 adenylate kinase; Provisional
Probab=97.51 E-value=8.2e-05 Score=59.76 Aligned_cols=28 Identities=36% Similarity=0.662 Sum_probs=24.3
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.++|+|||||||||+++.||+.++...+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3789999999999999999998876443
No 403
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.51 E-value=6.6e-05 Score=60.04 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998754
No 404
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.51 E-value=0.0022 Score=59.04 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.||+|.|+.|+|||+++++++..++
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp 50 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLP 50 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcC
Confidence 6899999999999999999998754
No 405
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=6.7e-05 Score=61.07 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56778999999999999999999998754
No 406
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.50 E-value=6.3e-05 Score=60.87 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999998764
No 407
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.50 E-value=9.2e-05 Score=57.22 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=31.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCCcHHHHhhcc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l~~~l~~rf~ 99 (217)
..++|+|++|+||||+.+++|+.++..++ +.|..+-+|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~-------D~D~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI-------DTDQEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc-------cchHHHHHHHC
Confidence 56999999999999999999999987664 34555555444
No 408
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.50 E-value=7.6e-05 Score=60.34 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 56788999999999999999999997654
No 409
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.50 E-value=9.3e-05 Score=59.77 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..+.|.||+|+|||||+++|++.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567789999999999999999999998
No 410
>PLN02674 adenylate kinase
Probab=97.50 E-value=9.5e-05 Score=60.58 Aligned_cols=31 Identities=32% Similarity=0.614 Sum_probs=26.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+...++|.|||||||||.++.||..++...+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 3467999999999999999999998887544
No 411
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.49 E-value=6.2e-05 Score=61.13 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 52 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 56678999999999999999999997754
No 412
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.49 E-value=8.1e-05 Score=57.94 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 56788999999999999999999998764
No 413
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.49 E-value=7.2e-05 Score=60.13 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998764
No 414
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.49 E-value=7.8e-05 Score=57.46 Aligned_cols=29 Identities=41% Similarity=0.655 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999998764
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.49 E-value=0.00012 Score=56.82 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-+.|.|+||+||||+++.++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999884
No 416
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00047 Score=57.55 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999997764
No 417
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.49 E-value=9.5e-05 Score=57.29 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46678999999999999999999998764
No 418
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=8.4e-05 Score=55.54 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=21.6
Q ss_pred EEEecCCCCcHHHHHHHHHHHhch
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++|.||+|+||||+++.|++.++.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 678999999999999999998653
No 419
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=8.7e-05 Score=57.41 Aligned_cols=29 Identities=41% Similarity=0.724 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 56788999999999999999999998765
No 420
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=7.5e-05 Score=57.87 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||++.|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998764
No 421
>PRK13946 shikimate kinase; Provisional
Probab=97.48 E-value=0.0001 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++.|+|+|++||||||+++.+|..++..++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 367999999999999999999999987554
No 422
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.48 E-value=6.7e-05 Score=60.00 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 56678999999999999999999997754
No 423
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.48 E-value=9.5e-05 Score=58.71 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.8
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++|+||+||||||+++++++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998775
No 424
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=8e-05 Score=60.47 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56678999999999999999999998754
No 425
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.46 E-value=0.00024 Score=59.53 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+..++|+||+|+||||++..+|..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999876
No 426
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.46 E-value=0.00017 Score=57.59 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=17.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999997766666655
No 427
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.46 E-value=8.1e-05 Score=56.06 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+|+||||++++|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 56678999999999999999999998764
No 428
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.46 E-value=0.00011 Score=57.31 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.++.-+.|.||+|||||||++++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4667899999999999999999863
No 429
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=8.9e-05 Score=58.81 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+||||++++|++....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56788999999999999999999998765
No 430
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.46 E-value=8e-05 Score=56.35 Aligned_cols=25 Identities=48% Similarity=0.809 Sum_probs=22.1
Q ss_pred EecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 57 MVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 57 l~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
|.||||+||||+++.||..++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~i 25 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHI 25 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCccee
Confidence 6899999999999999999986443
No 431
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.46 E-value=8.5e-05 Score=60.50 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56788999999999999999999997754
No 432
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00053 Score=57.44 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p 58 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKP 58 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56788999999999999999999998765
No 433
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=8.9e-05 Score=57.73 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998764
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.45 E-value=0.00031 Score=59.92 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++.-++|+||+|+||||++..+|..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4577899999999999999999997753
No 435
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.45 E-value=0.00022 Score=67.10 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++..+.|.||+|||||||++.|++++.+.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~ 527 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 677889999999999999999999988763
No 436
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.45 E-value=0.00011 Score=56.57 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..++|+|++||||||+++.+|..++..++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999987554
No 437
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=8.7e-05 Score=60.56 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999998754
No 438
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.45 E-value=9.2e-05 Score=59.83 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 56788999999999999999999998754
No 439
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=8.7e-05 Score=61.24 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999997654
No 440
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.44 E-value=8.3e-05 Score=59.95 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998764
No 441
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.44 E-value=0.00068 Score=62.13 Aligned_cols=29 Identities=31% Similarity=0.592 Sum_probs=26.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++++.+.+.|++|+|||||++.|++.+.+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 57788999999999999999999998875
No 442
>KOG3347|consensus
Probab=97.44 E-value=0.00011 Score=55.37 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=43.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 122 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~ 122 (217)
..||++|.|||||||++..+|..++...+....... +..+.--++....-+..|.+....-+...+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vk--En~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVK--ENNLYEGYDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHh--hhcchhcccccccCccccHHHHHHHHHHHHhc
Confidence 479999999999999999999988764442221100 11222244555555556666666666665543
No 443
>PRK13764 ATPase; Provisional
Probab=97.44 E-value=0.00016 Score=66.27 Aligned_cols=27 Identities=41% Similarity=0.797 Sum_probs=24.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+++++||+||||||++++++.+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999998863
No 444
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.43 E-value=0.00018 Score=64.70 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=40.0
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
...++++++..+++.+.+...+.. +..-++++||+||||||+++++...++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 456888888888888888876642 323478999999999999998877665
No 445
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.43 E-value=0.00053 Score=55.61 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=25.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
++.-+.|.||+|+||||+++.|++.+...
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34678899999999999999999988753
No 446
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.43 E-value=0.00029 Score=60.29 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.9
Q ss_pred EecCCCCcHHHHHHHHHHHhch
Q psy15622 57 MVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 57 l~Gp~G~GKTtla~aia~~~~~ 78 (217)
|.||+|||||||+++|++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p 22 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP 22 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC
Confidence 5799999999999999998764
No 447
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00022 Score=63.48 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=46.2
Q ss_pred hhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 5 IKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 5 ~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
|-|-.....-..++++++......+.+...+. +|..-+|++||.||||||.+.++...++.
T Consensus 224 VlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~-------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 224 VLRILDKDQVILDLEKLGMSPFQLARLLRLLN-------------RPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred EEEEeccccccCCHHHhCCCHHHHHHHHHHHh-------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 33444444556788889888888888887774 34344777999999999999999987765
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.43 E-value=0.00012 Score=55.08 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=21.1
Q ss_pred EEEecCCCCcHHHHHHHHHHHhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++|+||||+|||+++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998774
No 449
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.43 E-value=0.00088 Score=52.47 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc----------------------cccCCC-CCCcHHHHhhccccccccC-
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC----------------------GASNFP-WNIDDAFLRRLEKRIYVPL- 106 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~----------------------~~t~~~-~~l~~~l~~rf~~~i~~~~- 106 (217)
.+..+.+.|.+|+||||||+.+|+...+-.+ ..-..| ..++|.+ ++...+..|+
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl--~iGqiLd~PL~ 115 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL--RIGQILDFPLR 115 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh--hhhhHhcchhh
Confidence 4467899999999999999999997765111 000011 1223322 1222233332
Q ss_pred ----CCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCc
Q psy15622 107 ----PSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPV 182 (217)
Q Consensus 107 ----p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 182 (217)
.+.++|.+-+..-++..++.++-..-. ..-++.++-++++-..++.-- +..+
T Consensus 116 l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~----~~~la~~QKQRVaLARALIL~--------------------P~iI 171 (267)
T COG4167 116 LNTDLEPEQRRKQIFETLRMVGLLPDHANYY----PHMLAPGQKQRVALARALILR--------------------PKII 171 (267)
T ss_pred hcccCChHHHHHHHHHHHHHhccCccccccc----hhhcCchhHHHHHHHHHHhcC--------------------CcEE
Confidence 356677777777777777765421101 112455566655543322110 1112
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 183 TKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 183 t~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
-. ++|+..+.-++.-+-+..+.+.-++.|-|
T Consensus 172 Ia---DeAl~~LD~smrsQl~NL~LeLQek~GiS 202 (267)
T COG4167 172 IA---DEALASLDMSMRSQLINLMLELQEKQGIS 202 (267)
T ss_pred Ee---hhhhhhccHHHHHHHHHHHHHHHHHhCce
Confidence 12 24555555556666667777777776654
No 450
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=9.9e-05 Score=59.63 Aligned_cols=29 Identities=41% Similarity=0.685 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 46677999999999999999999998754
No 451
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.43 E-value=9.8e-05 Score=58.81 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 46678999999999999999999997754
No 452
>PLN03211 ABC transporter G-25; Provisional
Probab=97.42 E-value=0.0002 Score=66.82 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++++-+.|.||+|+|||||+++|++...
T Consensus 92 ~~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 92 SPGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6778899999999999999999999764
No 453
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.42 E-value=9.3e-05 Score=57.83 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998765
No 454
>PLN03232 ABC transporter C family member; Provisional
Probab=97.42 E-value=0.0002 Score=72.59 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=58.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhhc----------cccCCCCCCcHHHHhhccccccccCC-CHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC----------GASNFPWNIDDAFLRRLEKRIYVPLP-SSSGRQELLRL 118 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~~----------~~t~~~~~l~~~l~~rf~~~i~~~~p-~~~~r~~il~~ 118 (217)
.+++.+.++||+|||||||+++|.+++...-+ -....|+-.+..++. -|.+..| +.+...+.++.
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIre----NI~fg~~~~~e~~~~vl~~ 716 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRE----NILFGSDFESERYWRAIDV 716 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHH----HhhcCCccCHHHHHHHHHH
Confidence 56778999999999999999999998875321 223445555555544 1222222 44445555554
Q ss_pred HH--hhCCCCCcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 119 IL--RQVDLASDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 119 ~l--~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
+- ..+..-++-+...+.+.-..+|||+-++++...
T Consensus 717 ~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753 (1495)
T ss_pred hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHH
Confidence 31 001001111223344445569999998887544
No 455
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.42 E-value=0.0015 Score=58.04 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=43.2
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
..+..+..+|||.+.....+.+.+...- .....|||.|.+||||...||+|-+
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~ 268 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQ 268 (550)
T ss_pred cchhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHh
Confidence 4446788899999999999888886422 2346799999999999999999976
No 456
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.41 E-value=9.1e-05 Score=59.77 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
+.+..++|||+||+||||+|+.+++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3346699999999999999999873
No 457
>PRK10436 hypothetical protein; Provisional
Probab=97.40 E-value=0.00025 Score=63.40 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
....++++++..+...+.+.+.+.. +...+|++||.|+||||++.++...++
T Consensus 192 ~~~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 192 QQALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 3346888998888888888877642 335588999999999999988877664
No 458
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00012 Score=59.41 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 46678999999999999999999998765
No 459
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00012 Score=60.06 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|||||||+++|++.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4667899999999999999999999875
No 460
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.40 E-value=0.00023 Score=65.01 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=27.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|.||+|+|||||++.|++++.+.
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 577889999999999999999999988753
No 461
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.40 E-value=0.00047 Score=64.79 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=27.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|+||+|||||||++.|++++.+.
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 677889999999999999999999988763
No 462
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.40 E-value=0.00011 Score=59.34 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++.+.|.||+|+|||||++.|++.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 5678899999999999999999999876
No 463
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00013 Score=56.23 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++++|.||+||||+++.++ .++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 47899999999999999999 7765
No 464
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00011 Score=60.04 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999998754
No 465
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00011 Score=60.77 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46678999999999999999999998754
No 466
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.40 E-value=0.00029 Score=53.83 Aligned_cols=60 Identities=28% Similarity=0.310 Sum_probs=36.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhccccCCCCCCcHHHHh-hccccccccCCCHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLR-RLEKRIYVPLPSSSGRQELLRLI 119 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~~~~~l~~~l~~-rf~~~i~~~~p~~~~r~~il~~~ 119 (217)
.-|.|+|.||+||||+|+++...+.. ......-||...+| .+..-+.| +.++|.+-++.+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~----~g~~~~~LDgD~lR~~l~~dl~f---s~~dR~e~~rr~ 63 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFA----RGIKVYLLDGDNLRHGLNADLGF---SKEDREENIRRI 63 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH----TTS-EEEEEHHHHCTTTTTT--S---SHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEecCcchhhccCCCCCC---CHHHHHHHHHHH
Confidence 46889999999999999999998752 12222345555554 23322222 445555555443
No 467
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.40 E-value=0.00011 Score=58.41 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998765
No 468
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.39 E-value=0.00011 Score=58.99 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+|||||++.|++.+..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 35577999999999999999999997754
No 469
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.39 E-value=0.00055 Score=59.81 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+|||||+++|++.+.+
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p 76 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNPV 76 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 46677999999999999999999998765
No 470
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.39 E-value=0.00015 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++++|+|||||||+++.++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999883
No 471
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00011 Score=59.64 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||++.|++.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999997764
No 472
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.38 E-value=0.00012 Score=59.39 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46678999999999999999999998764
No 473
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.38 E-value=0.00011 Score=60.27 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788999999999999999999997754
No 474
>PF05729 NACHT: NACHT domain
Probab=97.38 E-value=0.00016 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.2
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
-++|+|++|+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 478999999999999999997554
No 475
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00016 Score=56.33 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.0
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch--hhccccCCC
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ--VHCGASNFP 87 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~--~~~~~t~~~ 87 (217)
+.-++|.||||+||||+++++-...+. .+-+||+.|
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 456889999999999999999876544 333555543
No 476
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.38 E-value=0.00012 Score=59.45 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 56788999999999999999999998754
No 477
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.38 E-value=0.00011 Score=60.39 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998765
No 478
>PF13173 AAA_14: AAA domain
Probab=97.38 E-value=0.00018 Score=52.88 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.++|+||.||||||+++.+++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5689999999999999999998664
No 479
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.38 E-value=0.00032 Score=65.05 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=25.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.|++-+.|.||+|+|||||+++|++...
T Consensus 49 ~~Ge~~aI~G~sGsGKSTLL~~L~g~~~ 76 (617)
T TIGR00955 49 KPGELLAVMGSSGAGKTTLMNALAFRSP 76 (617)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6778899999999999999999999764
No 480
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00012 Score=59.81 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 55 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDP 55 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999997754
No 481
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.38 E-value=0.00013 Score=59.38 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 46678999999999999999999998764
No 482
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.38 E-value=0.00013 Score=59.55 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..+.|.||+|+|||||+++|++.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567789999999999999999999984
No 483
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.38 E-value=0.00014 Score=58.71 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 56778999999999999999999998764
No 484
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.38 E-value=0.00012 Score=59.90 Aligned_cols=29 Identities=34% Similarity=0.668 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46677999999999999999999997754
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.38 E-value=0.00012 Score=58.71 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 56678999999999999999999998765
No 486
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.37 E-value=0.00012 Score=59.62 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEI 53 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998754
No 487
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.37 E-value=0.00012 Score=60.16 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=24.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+.|.||+|+|||||+++|++.+.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4567999999999999999999997754
No 488
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.37 E-value=0.00012 Score=59.41 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+|||||+++|++.+..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678999999999999999999998754
No 489
>PRK01184 hypothetical protein; Provisional
Probab=97.37 E-value=0.00013 Score=56.90 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
-|+|+|||||||||+++ ++..++..++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i 29 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVV 29 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEE
Confidence 47899999999999988 6777775444
No 490
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.37 E-value=0.00013 Score=61.29 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=23.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh-ch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY-NQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~-~~ 78 (217)
.-+++.|+|||||||+++.++..+ +.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~ 29 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKA 29 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCC
Confidence 468889999999999999999988 44
No 491
>PRK08356 hypothetical protein; Provisional
Probab=97.37 E-value=0.00018 Score=56.84 Aligned_cols=32 Identities=28% Similarity=0.194 Sum_probs=25.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhccccC
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASN 85 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~ 85 (217)
.-++|+||||+||||+++.|.. ++..++.+++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCC
Confidence 4588999999999999999965 6766555554
No 492
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.37 E-value=0.00012 Score=58.57 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57788999999999999999999997754
No 493
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00012 Score=61.10 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998754
No 494
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.37 E-value=0.00016 Score=67.74 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=27.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.|++.+.+.|+||||||||+|.+.+++.+.-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5677899999999999999999999888743
No 495
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.37 E-value=0.00013 Score=58.85 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998764
No 496
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00011 Score=60.32 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56778999999999999999999998764
No 497
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.37 E-value=0.00014 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHhch
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
|.|+|++|||||||++.|+.. +.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~ 24 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GY 24 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CC
Confidence 789999999999999999988 43
No 498
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.37 E-value=0.00015 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHhc
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~~~ 77 (217)
|+|+|+|||||||+|+.++..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998774
No 499
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00014 Score=59.62 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|+|||||+++|++.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 5667899999999999999999998765
No 500
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00016 Score=59.40 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=25.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|+|||||+++|++...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5667899999999999999999999764
Done!