Query psy15622
Match_columns 217
No_of_seqs 177 out of 1886
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 17:25:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.2E-41 7.4E-46 291.9 14.1 188 5-209 134-404 (405)
2 4b4t_H 26S protease regulatory 100.0 1.3E-39 4.5E-44 284.2 15.7 184 10-210 200-467 (467)
3 4b4t_I 26S protease regulatory 100.0 4.1E-40 1.4E-44 285.0 10.0 177 10-203 173-432 (437)
4 4b4t_M 26S protease regulatory 100.0 4.3E-39 1.5E-43 280.9 16.3 175 9-200 171-428 (434)
5 4b4t_L 26S protease subunit RP 100.0 2.7E-39 9.2E-44 282.4 15.0 179 6-201 168-429 (437)
6 4b4t_K 26S protease regulatory 100.0 4.4E-38 1.5E-42 274.3 14.8 178 9-203 162-424 (428)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.8E-37 2.7E-41 258.8 20.5 208 9-216 2-321 (322)
8 3cf2_A TER ATPase, transitiona 100.0 1E-39 3.4E-44 302.6 2.8 210 7-216 465-765 (806)
9 2qp9_X Vacuolar protein sortin 100.0 1.2E-35 4.1E-40 254.6 19.5 215 2-216 34-353 (355)
10 3eie_A Vacuolar protein sortin 100.0 1.3E-35 4.5E-40 251.1 17.6 208 8-215 7-319 (322)
11 3cf0_A Transitional endoplasmi 100.0 9.3E-35 3.2E-39 243.8 18.6 208 7-214 3-301 (301)
12 2zan_A Vacuolar protein sortin 100.0 4E-35 1.4E-39 258.2 17.1 215 2-216 117-443 (444)
13 3cf2_A TER ATPase, transitiona 100.0 2.6E-35 8.9E-40 273.1 7.8 205 12-216 197-492 (806)
14 2x8a_A Nuclear valosin-contain 100.0 4.5E-33 1.6E-37 230.8 14.6 186 12-203 3-273 (274)
15 3b9p_A CG5977-PA, isoform A; A 100.0 2.8E-32 9.5E-37 227.4 15.3 210 1-215 3-293 (297)
16 3d8b_A Fidgetin-like protein 1 100.0 8.8E-32 3E-36 230.7 15.2 209 3-216 68-356 (357)
17 3vfd_A Spastin; ATPase, microt 100.0 6.2E-30 2.1E-34 221.4 18.2 209 2-215 98-386 (389)
18 3h4m_A Proteasome-activating n 100.0 2.4E-28 8.1E-33 202.4 15.9 189 10-215 8-281 (285)
19 3hu3_A Transitional endoplasmi 100.0 6.1E-29 2.1E-33 220.8 12.8 195 13-207 198-483 (489)
20 1ypw_A Transitional endoplasmi 99.9 2E-30 6.7E-35 242.6 -4.8 208 9-216 467-765 (806)
21 1lv7_A FTSH; alpha/beta domain 99.9 2.2E-26 7.7E-31 188.1 15.6 169 10-196 3-254 (257)
22 2ce7_A Cell division protein F 99.9 1.6E-25 5.6E-30 197.8 16.0 166 13-196 10-258 (476)
23 1ixz_A ATP-dependent metallopr 99.9 2.2E-25 7.5E-30 181.9 14.5 165 9-191 6-253 (254)
24 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.5E-25 5E-30 183.0 8.9 165 14-196 1-251 (262)
25 1iy2_A ATP-dependent metallopr 99.9 3.4E-24 1.2E-28 177.3 16.4 164 10-191 31-277 (278)
26 2r62_A Cell division protease 99.9 4.6E-26 1.6E-30 187.1 4.9 173 11-201 3-260 (268)
27 2dhr_A FTSH; AAA+ protein, hex 99.9 6.4E-25 2.2E-29 195.0 12.1 168 12-197 24-274 (499)
28 1ypw_A Transitional endoplasmi 99.9 1.3E-23 4.5E-28 196.5 7.6 200 12-211 197-487 (806)
29 3uk6_A RUVB-like 2; hexameric 99.7 1.2E-16 4.2E-21 136.2 11.8 92 86-195 239-331 (368)
30 3pfi_A Holliday junction ATP-d 99.7 6.4E-16 2.2E-20 130.5 15.6 163 9-196 19-256 (338)
31 1hqc_A RUVB; extended AAA-ATPa 99.6 3.8E-15 1.3E-19 124.7 14.5 179 11-214 4-261 (324)
32 3t15_A Ribulose bisphosphate c 99.6 7.7E-16 2.6E-20 128.2 9.3 63 80-148 158-222 (293)
33 1in4_A RUVB, holliday junction 99.6 5.4E-14 1.8E-18 119.1 20.0 182 8-214 14-273 (334)
34 3syl_A Protein CBBX; photosynt 99.6 3.6E-15 1.2E-19 124.2 10.7 143 20-163 32-268 (309)
35 3bos_A Putative DNA replicatio 99.6 7.9E-14 2.7E-18 111.2 16.3 148 14-192 23-241 (242)
36 2chg_A Replication factor C sm 99.6 1.7E-14 5.9E-19 113.3 12.2 147 10-192 8-224 (226)
37 1njg_A DNA polymerase III subu 99.6 4.4E-14 1.5E-18 112.1 13.5 149 9-191 13-248 (250)
38 3vlf_B 26S protease regulatory 99.6 8.2E-15 2.8E-19 100.6 7.7 86 108-210 2-88 (88)
39 3m6a_A ATP-dependent protease 99.6 1.8E-14 6.2E-19 129.5 11.4 160 18-195 80-342 (543)
40 3aji_B S6C, proteasome (prosom 99.5 5.5E-15 1.9E-19 100.4 5.4 81 108-206 2-82 (83)
41 2c9o_A RUVB-like 1; hexameric 99.5 1.1E-16 3.9E-21 141.0 -4.5 124 13-152 31-262 (456)
42 3kw6_A 26S protease regulatory 99.5 3.3E-14 1.1E-18 95.4 7.5 75 105-196 1-75 (78)
43 2r44_A Uncharacterized protein 99.5 2.1E-13 7.2E-18 114.8 14.2 152 13-195 21-298 (331)
44 2krk_A 26S protease regulatory 99.5 1.9E-14 6.6E-19 98.3 6.3 78 103-197 7-84 (86)
45 1ofh_A ATP-dependent HSL prote 99.5 9.8E-14 3.4E-18 115.1 11.5 166 19-195 15-300 (310)
46 3pvs_A Replication-associated 99.5 7.6E-14 2.6E-18 122.6 11.0 159 11-198 18-248 (447)
47 2z4s_A Chromosomal replication 99.5 1.1E-12 3.8E-17 115.0 15.7 154 13-196 99-334 (440)
48 1g8p_A Magnesium-chelatase 38 99.5 4.5E-13 1.6E-17 113.1 12.6 97 81-195 191-323 (350)
49 1sxj_D Activator 1 41 kDa subu 99.5 4E-13 1.4E-17 113.5 11.8 155 9-193 27-262 (353)
50 1jr3_A DNA polymerase III subu 99.5 8.3E-13 2.8E-17 112.3 13.4 133 9-154 6-225 (373)
51 1l8q_A Chromosomal replication 99.4 3.4E-12 1.2E-16 107.2 16.3 131 13-156 5-214 (324)
52 3pxg_A Negative regulator of g 99.4 9.4E-13 3.2E-17 116.3 12.7 135 10-157 171-385 (468)
53 3u61_B DNA polymerase accessor 99.4 6.7E-13 2.3E-17 111.4 10.6 120 9-140 16-207 (324)
54 1g41_A Heat shock protein HSLU 99.4 9.3E-14 3.2E-18 121.4 5.3 98 19-116 15-188 (444)
55 1iqp_A RFCS; clamp loader, ext 99.4 4.9E-12 1.7E-16 105.5 15.6 130 9-152 15-214 (327)
56 4fcw_A Chaperone protein CLPB; 99.4 8.7E-13 3E-17 109.7 8.7 142 19-163 17-284 (311)
57 2chq_A Replication factor C sm 99.4 3.2E-12 1.1E-16 106.3 12.1 118 9-139 7-194 (319)
58 1r6b_X CLPA protein; AAA+, N-t 99.4 2.1E-12 7.2E-17 120.1 10.9 176 14-215 181-458 (758)
59 2v1u_A Cell division control p 99.4 2.8E-11 9.7E-16 102.9 16.4 156 14-195 14-277 (387)
60 1sxj_A Activator 1 95 kDa subu 99.3 1.5E-11 5E-16 109.9 14.8 139 9-153 29-252 (516)
61 1sxj_B Activator 1 37 kDa subu 99.3 1.5E-11 5E-16 102.4 13.9 129 10-152 12-211 (323)
62 2dzn_B 26S protease regulatory 99.3 1.7E-13 5.8E-18 92.8 1.7 80 110-206 1-81 (82)
63 3pxi_A Negative regulator of g 99.3 1E-11 3.4E-16 115.7 13.3 134 11-157 172-385 (758)
64 1sxj_C Activator 1 40 kDa subu 99.3 8.6E-12 2.9E-16 105.5 11.5 125 9-150 15-209 (340)
65 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4.1E-15 99.3 17.1 163 15-202 13-282 (389)
66 3f9v_A Minichromosome maintena 99.3 3.3E-12 1.1E-16 115.9 6.0 101 19-122 295-492 (595)
67 1sxj_E Activator 1 40 kDa subu 99.3 3E-11 1E-15 102.2 11.0 132 9-153 4-240 (354)
68 2qby_B CDC6 homolog 3, cell di 99.2 2.3E-10 7.9E-15 97.5 15.3 150 18-195 19-271 (384)
69 3hws_A ATP-dependent CLP prote 99.2 3.7E-11 1.3E-15 102.5 10.0 93 90-192 239-347 (363)
70 1d2n_A N-ethylmaleimide-sensit 99.2 9.2E-12 3.2E-16 102.0 6.0 151 18-196 32-266 (272)
71 2qby_A CDC6 homolog 1, cell di 99.2 1.4E-10 4.7E-15 98.5 13.6 156 14-195 15-273 (386)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 3.5E-11 1.2E-15 106.9 10.1 44 19-76 22-65 (500)
73 1jbk_A CLPB protein; beta barr 99.2 4.5E-12 1.5E-16 97.1 3.4 54 11-76 14-67 (195)
74 3pxi_A Negative regulator of g 99.2 4.7E-11 1.6E-15 111.2 10.1 142 19-163 491-730 (758)
75 1r6b_X CLPA protein; AAA+, N-t 99.2 8E-11 2.7E-15 109.5 9.8 141 20-163 459-721 (758)
76 1um8_A ATP-dependent CLP prote 99.1 1.6E-10 5.5E-15 98.9 9.5 94 90-194 256-365 (376)
77 3k1j_A LON protease, ATP-depen 99.1 5.2E-10 1.8E-14 101.7 9.8 53 10-76 32-84 (604)
78 1qvr_A CLPB protein; coiled co 99.0 1.9E-10 6.5E-15 108.4 6.8 132 12-156 163-391 (854)
79 1qvr_A CLPB protein; coiled co 99.0 6.4E-10 2.2E-14 104.8 9.6 142 19-163 558-825 (854)
80 2p65_A Hypothetical protein PF 99.0 1.7E-10 5.9E-15 88.0 3.9 55 10-76 13-67 (187)
81 2bjv_A PSP operon transcriptio 98.9 4.8E-09 1.6E-13 85.3 10.7 50 16-75 3-52 (265)
82 3te6_A Regulatory protein SIR3 98.8 4.1E-09 1.4E-13 88.4 6.9 43 81-123 167-214 (318)
83 1ojl_A Transcriptional regulat 98.8 1.7E-08 6E-13 84.1 9.3 47 19-75 2-48 (304)
84 1a5t_A Delta prime, HOLB; zinc 98.7 6.2E-08 2.1E-12 81.7 10.4 56 80-140 141-196 (334)
85 3ec2_A DNA replication protein 98.6 6.2E-08 2.1E-12 74.1 6.3 56 12-77 3-63 (180)
86 2gno_A DNA polymerase III, gam 98.5 1.3E-07 4.3E-12 79.0 6.6 83 23-120 1-152 (305)
87 1w5s_A Origin recognition comp 98.5 2.1E-06 7E-11 73.5 12.5 57 14-76 17-76 (412)
88 3n70_A Transport activator; si 98.4 2E-07 6.9E-12 69.0 5.3 47 20-76 2-48 (145)
89 4akg_A Glutathione S-transfera 98.4 2.1E-07 7.2E-12 95.8 5.7 42 80-122 1387-1433(2695)
90 2w58_A DNAI, primosome compone 98.4 4.1E-07 1.4E-11 70.6 6.0 56 14-77 20-79 (202)
91 3co5_A Putative two-component 98.4 7E-08 2.4E-12 71.4 1.3 48 20-77 5-52 (143)
92 3cmw_A Protein RECA, recombina 98.2 5.1E-07 1.7E-11 89.7 3.8 84 13-99 1014-1131(1706)
93 2qgz_A Helicase loader, putati 98.1 2.3E-06 7.9E-11 71.3 5.6 55 14-77 119-177 (308)
94 3rlf_A Maltose/maltodextrin im 98.1 6.2E-06 2.1E-10 70.7 7.1 29 50-78 27-55 (381)
95 3tif_A Uncharacterized ABC tra 98.1 8.3E-06 2.8E-10 65.3 6.9 29 50-78 29-57 (235)
96 3f8t_A Predicted ATPase involv 98.0 5.1E-05 1.7E-09 66.6 11.8 40 139-195 445-484 (506)
97 1tue_A Replication protein E1; 98.0 2.7E-06 9.1E-11 66.8 3.1 33 53-85 59-91 (212)
98 3vaa_A Shikimate kinase, SK; s 98.0 3.5E-06 1.2E-10 65.4 3.7 31 51-81 24-54 (199)
99 1kag_A SKI, shikimate kinase I 98.0 3.1E-06 1.1E-10 63.8 3.3 30 52-81 4-33 (173)
100 3fvq_A Fe(3+) IONS import ATP- 98.0 9.6E-06 3.3E-10 69.0 6.1 29 50-78 28-56 (359)
101 3trf_A Shikimate kinase, SK; a 98.0 4.3E-06 1.5E-10 63.8 3.5 30 52-81 5-34 (185)
102 2it1_A 362AA long hypothetical 97.9 1.5E-05 5.2E-10 67.9 6.9 29 50-78 27-55 (362)
103 4eun_A Thermoresistant glucoki 97.9 5.4E-06 1.8E-10 64.4 3.7 32 51-82 28-59 (200)
104 3gfo_A Cobalt import ATP-bindi 97.9 1.1E-05 3.7E-10 66.3 5.6 29 50-78 32-60 (275)
105 1qhx_A CPT, protein (chloramph 97.9 6.1E-06 2.1E-10 62.5 3.7 27 52-78 3-29 (178)
106 1svm_A Large T antigen; AAA+ f 97.9 6.8E-06 2.3E-10 70.4 4.3 57 23-80 130-197 (377)
107 2kjq_A DNAA-related protein; s 97.9 4.4E-06 1.5E-10 62.2 2.6 27 51-77 35-61 (149)
108 2bbw_A Adenylate kinase 4, AK4 97.9 7.2E-06 2.5E-10 65.7 3.9 29 50-78 25-53 (246)
109 3uie_A Adenylyl-sulfate kinase 97.9 7.5E-06 2.6E-10 63.6 3.9 28 50-77 23-50 (200)
110 2yyz_A Sugar ABC transporter, 97.9 1.4E-05 4.8E-10 68.0 5.6 29 50-78 27-55 (359)
111 1knq_A Gluconate kinase; ALFA/ 97.9 7.8E-06 2.7E-10 61.8 3.6 32 51-82 7-38 (175)
112 4g1u_C Hemin import ATP-bindin 97.9 1.9E-05 6.6E-10 64.4 6.1 29 50-78 35-63 (266)
113 1u0j_A DNA replication protein 97.9 7.7E-06 2.6E-10 66.7 3.6 26 53-78 105-130 (267)
114 3kb2_A SPBC2 prophage-derived 97.9 6.9E-06 2.3E-10 61.6 3.1 28 54-81 3-30 (173)
115 3tui_C Methionine import ATP-b 97.9 1.8E-05 6.1E-10 67.5 6.0 29 50-78 52-80 (366)
116 1z47_A CYSA, putative ABC-tran 97.9 1.8E-05 6.1E-10 67.2 5.8 29 50-78 39-67 (355)
117 1zp6_A Hypothetical protein AT 97.8 7.7E-06 2.6E-10 62.6 3.0 26 51-76 8-33 (191)
118 3tr0_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 62.4 3.9 27 51-77 6-32 (205)
119 2rhm_A Putative kinase; P-loop 97.8 1E-05 3.6E-10 61.8 3.6 29 52-80 5-33 (193)
120 1ye8_A Protein THEP1, hypothet 97.8 1.1E-05 3.8E-10 61.8 3.7 27 54-80 2-28 (178)
121 1lvg_A Guanylate kinase, GMP k 97.8 1E-05 3.5E-10 62.9 3.6 27 51-77 3-29 (198)
122 1vpl_A ABC transporter, ATP-bi 97.8 2E-05 6.9E-10 63.9 5.5 29 50-78 39-67 (256)
123 1kgd_A CASK, peripheral plasma 97.8 1.1E-05 3.8E-10 61.6 3.7 27 51-77 4-30 (180)
124 1v43_A Sugar-binding transport 97.8 1.9E-05 6.7E-10 67.4 5.6 29 50-78 35-63 (372)
125 3c8u_A Fructokinase; YP_612366 97.8 1E-05 3.5E-10 63.2 3.3 29 50-78 20-48 (208)
126 3t61_A Gluconokinase; PSI-biol 97.8 1.2E-05 4.1E-10 62.3 3.6 30 52-81 18-47 (202)
127 3iij_A Coilin-interacting nucl 97.8 1.3E-05 4.3E-10 61.0 3.6 30 52-81 11-40 (180)
128 1via_A Shikimate kinase; struc 97.8 1.1E-05 3.8E-10 61.1 3.2 28 54-81 6-33 (175)
129 3cm0_A Adenylate kinase; ATP-b 97.8 1.1E-05 3.9E-10 61.4 3.1 29 52-80 4-32 (186)
130 1znw_A Guanylate kinase, GMP k 97.8 1.4E-05 4.8E-10 62.4 3.7 28 50-77 18-45 (207)
131 3nh6_A ATP-binding cassette SU 97.8 3.3E-05 1.1E-09 64.3 6.1 29 50-78 78-106 (306)
132 2iyv_A Shikimate kinase, SK; t 97.8 1.3E-05 4.5E-10 61.0 3.4 28 53-80 3-30 (184)
133 3asz_A Uridine kinase; cytidin 97.8 1.6E-05 5.6E-10 61.9 3.8 27 51-77 5-31 (211)
134 1aky_A Adenylate kinase; ATP:A 97.8 1.6E-05 5.3E-10 62.6 3.7 31 51-81 3-33 (220)
135 1ly1_A Polynucleotide kinase; 97.8 1.2E-05 4E-10 60.8 2.8 27 53-79 3-30 (181)
136 3a00_A Guanylate kinase, GMP k 97.7 1.5E-05 5.2E-10 61.1 3.4 25 53-77 2-26 (186)
137 1htw_A HI0065; nucleotide-bind 97.7 1.9E-05 6.4E-10 59.4 3.8 27 50-76 31-57 (158)
138 3tau_A Guanylate kinase, GMP k 97.7 1.6E-05 5.5E-10 62.2 3.5 28 51-78 7-34 (208)
139 3ney_A 55 kDa erythrocyte memb 97.7 2.3E-05 7.7E-10 61.2 4.2 27 51-77 18-44 (197)
140 2c95_A Adenylate kinase 1; tra 97.7 1.8E-05 6E-10 60.7 3.6 29 52-80 9-37 (196)
141 1kht_A Adenylate kinase; phosp 97.7 1.9E-05 6.4E-10 60.2 3.7 25 53-77 4-28 (192)
142 1gvn_B Zeta; postsegregational 97.7 3E-05 1E-09 63.9 5.1 48 25-76 10-57 (287)
143 2j41_A Guanylate kinase; GMP, 97.7 1.7E-05 5.7E-10 61.4 3.4 26 51-76 5-30 (207)
144 1z6g_A Guanylate kinase; struc 97.7 1.8E-05 6.1E-10 62.5 3.6 28 50-77 21-48 (218)
145 1tev_A UMP-CMP kinase; ploop, 97.7 1.8E-05 6.2E-10 60.4 3.5 29 52-80 3-31 (196)
146 2cdn_A Adenylate kinase; phosp 97.7 2.2E-05 7.4E-10 60.8 3.8 30 52-81 20-49 (201)
147 1y63_A LMAJ004144AAA protein; 97.7 1.9E-05 6.4E-10 60.5 3.3 30 52-81 10-40 (184)
148 3umf_A Adenylate kinase; rossm 97.7 2.1E-05 7.1E-10 62.3 3.6 30 52-81 29-58 (217)
149 2qen_A Walker-type ATPase; unk 97.7 6.6E-05 2.3E-09 62.4 6.8 54 10-77 3-56 (350)
150 2eyu_A Twitching motility prot 97.7 2.3E-05 7.9E-10 63.7 3.8 29 50-78 23-51 (261)
151 2qor_A Guanylate kinase; phosp 97.7 2.3E-05 7.7E-10 61.0 3.6 28 50-77 10-37 (204)
152 2ze6_A Isopentenyl transferase 97.7 1.9E-05 6.6E-10 63.8 3.2 28 54-81 3-30 (253)
153 3tlx_A Adenylate kinase 2; str 97.7 2.5E-05 8.5E-10 62.7 3.8 31 51-81 28-58 (243)
154 1ex7_A Guanylate kinase; subst 97.7 2.6E-05 8.9E-10 60.3 3.6 35 53-87 2-40 (186)
155 1zuh_A Shikimate kinase; alpha 97.7 2.4E-05 8.3E-10 58.7 3.4 29 53-81 8-36 (168)
156 1cke_A CK, MSSA, protein (cyti 97.7 2.6E-05 9E-10 61.2 3.7 26 53-78 6-31 (227)
157 1nks_A Adenylate kinase; therm 97.7 2.3E-05 7.7E-10 59.8 3.2 24 54-77 3-26 (194)
158 3sr0_A Adenylate kinase; phosp 97.7 2E-05 6.8E-10 61.9 2.9 28 54-81 2-29 (206)
159 3lw7_A Adenylate kinase relate 97.7 2.1E-05 7.1E-10 58.8 2.9 27 54-81 3-29 (179)
160 2bwj_A Adenylate kinase 5; pho 97.7 2.4E-05 8.2E-10 60.1 3.3 29 52-80 12-40 (199)
161 1s96_A Guanylate kinase, GMP k 97.7 2.8E-05 9.5E-10 61.6 3.8 28 50-77 14-41 (219)
162 1e6c_A Shikimate kinase; phosp 97.7 2.4E-05 8.1E-10 58.8 3.2 28 53-80 3-30 (173)
163 3fb4_A Adenylate kinase; psych 97.6 2.4E-05 8.3E-10 61.1 3.2 28 54-81 2-29 (216)
164 2plr_A DTMP kinase, probable t 97.6 3.3E-05 1.1E-09 59.8 3.9 27 52-78 4-30 (213)
165 3b9q_A Chloroplast SRP recepto 97.6 7.3E-05 2.5E-09 62.1 6.1 29 50-78 98-126 (302)
166 1qf9_A UMP/CMP kinase, protein 97.6 2.7E-05 9.4E-10 59.3 3.3 30 52-81 6-35 (194)
167 3dl0_A Adenylate kinase; phosp 97.6 2.4E-05 8.1E-10 61.2 3.0 28 54-81 2-29 (216)
168 2vli_A Antibiotic resistance p 97.6 1.9E-05 6.3E-10 60.0 2.3 29 53-81 6-34 (183)
169 1zd8_A GTP:AMP phosphotransfer 97.6 2.6E-05 9E-10 61.6 3.2 30 52-81 7-36 (227)
170 2v9p_A Replication protein E1; 97.6 3.4E-05 1.2E-09 64.2 3.9 28 50-77 124-151 (305)
171 2pcj_A ABC transporter, lipopr 97.6 1.7E-05 5.7E-10 63.1 1.8 29 50-78 28-56 (224)
172 1p9r_A General secretion pathw 97.6 7.8E-05 2.7E-09 64.7 6.1 51 15-78 143-193 (418)
173 4akg_A Glutathione S-transfera 97.6 0.00058 2E-08 70.9 13.3 27 52-78 645-671 (2695)
174 1zak_A Adenylate kinase; ATP:A 97.6 3.8E-05 1.3E-09 60.4 3.8 29 52-80 5-33 (222)
175 2cbz_A Multidrug resistance-as 97.6 2E-05 6.7E-10 63.2 2.1 29 50-78 29-57 (237)
176 3be4_A Adenylate kinase; malar 97.6 3E-05 1E-09 60.9 3.1 29 53-81 6-34 (217)
177 2pt5_A Shikimate kinase, SK; a 97.6 3.5E-05 1.2E-09 57.7 3.2 27 54-80 2-28 (168)
178 2pez_A Bifunctional 3'-phospho 97.6 4.5E-05 1.6E-09 57.8 3.9 26 51-76 4-29 (179)
179 1ak2_A Adenylate kinase isoenz 97.6 4.1E-05 1.4E-09 60.8 3.8 30 52-81 16-45 (233)
180 2ga8_A Hypothetical 39.9 kDa p 97.6 7.8E-05 2.7E-09 63.2 5.6 51 22-80 2-52 (359)
181 1b0u_A Histidine permease; ABC 97.6 2.3E-05 7.8E-10 63.8 2.3 29 50-78 30-58 (262)
182 1ukz_A Uridylate kinase; trans 97.6 3.8E-05 1.3E-09 59.4 3.4 28 53-80 16-43 (203)
183 2wwf_A Thymidilate kinase, put 97.6 4.3E-05 1.5E-09 59.3 3.6 29 52-80 10-38 (212)
184 4gp7_A Metallophosphoesterase; 97.6 4.8E-05 1.7E-09 57.6 3.8 22 51-72 8-29 (171)
185 2jaq_A Deoxyguanosine kinase; 97.6 4.2E-05 1.4E-09 58.8 3.5 27 54-80 2-28 (205)
186 2p5t_B PEZT; postsegregational 97.6 2.7E-05 9.3E-10 62.8 2.5 27 51-77 31-57 (253)
187 1mv5_A LMRA, multidrug resista 97.6 2.5E-05 8.4E-10 62.8 2.2 29 50-78 26-54 (243)
188 2bdt_A BH3686; alpha-beta prot 97.6 3.4E-05 1.2E-09 59.0 2.9 25 53-77 3-27 (189)
189 2og2_A Putative signal recogni 97.6 9.9E-05 3.4E-09 62.8 6.0 29 50-78 155-183 (359)
190 2yvu_A Probable adenylyl-sulfa 97.6 5.3E-05 1.8E-09 57.8 3.9 28 51-78 12-39 (186)
191 4a74_A DNA repair and recombin 97.6 4.4E-05 1.5E-09 59.8 3.5 28 50-77 23-50 (231)
192 4e22_A Cytidylate kinase; P-lo 97.6 5E-05 1.7E-09 61.2 3.9 28 51-78 26-53 (252)
193 3nwj_A ATSK2; P loop, shikimat 97.5 4.3E-05 1.5E-09 61.8 3.5 30 52-81 48-77 (250)
194 3jvv_A Twitching mobility prot 97.5 5.4E-05 1.9E-09 64.3 4.2 28 51-78 122-149 (356)
195 1nn5_A Similar to deoxythymidy 97.5 5.3E-05 1.8E-09 58.9 3.8 28 52-79 9-36 (215)
196 1sgw_A Putative ABC transporte 97.5 2.7E-05 9.2E-10 61.5 2.1 29 50-78 33-61 (214)
197 2pze_A Cystic fibrosis transme 97.5 2.6E-05 8.8E-10 62.2 1.9 29 50-78 32-60 (229)
198 3aez_A Pantothenate kinase; tr 97.5 5.5E-05 1.9E-09 63.1 3.9 29 50-78 88-116 (312)
199 2olj_A Amino acid ABC transpor 97.5 3E-05 1E-09 63.2 2.3 29 50-78 48-76 (263)
200 1g6h_A High-affinity branched- 97.5 2.9E-05 9.8E-10 63.0 2.1 29 50-78 31-59 (257)
201 2fna_A Conserved hypothetical 97.5 0.00013 4.5E-09 60.6 6.3 52 10-77 4-55 (357)
202 2ff7_A Alpha-hemolysin translo 97.5 2.9E-05 1E-09 62.6 2.1 29 50-78 33-61 (247)
203 2ixe_A Antigen peptide transpo 97.5 3.1E-05 1.1E-09 63.3 2.2 29 50-78 43-71 (271)
204 2if2_A Dephospho-COA kinase; a 97.5 4E-05 1.4E-09 59.3 2.8 26 54-80 3-28 (204)
205 2jeo_A Uridine-cytidine kinase 97.5 6.2E-05 2.1E-09 60.3 3.9 29 51-79 24-52 (245)
206 1ji0_A ABC transporter; ATP bi 97.5 3.1E-05 1.1E-09 62.1 2.1 29 50-78 30-58 (240)
207 1e4v_A Adenylate kinase; trans 97.5 4.6E-05 1.6E-09 59.6 3.1 28 54-81 2-29 (214)
208 2onk_A Molybdate/tungstate ABC 97.5 3.9E-05 1.3E-09 61.6 2.6 28 50-78 23-50 (240)
209 2i3b_A HCR-ntpase, human cance 97.5 6.2E-05 2.1E-09 58.2 3.7 25 53-77 2-26 (189)
210 3d31_A Sulfate/molybdate ABC t 97.5 3.1E-05 1.1E-09 65.6 2.1 29 50-78 24-52 (348)
211 2xb4_A Adenylate kinase; ATP-b 97.5 4.9E-05 1.7E-09 60.0 3.0 28 54-81 2-29 (223)
212 2qi9_C Vitamin B12 import ATP- 97.5 3.2E-05 1.1E-09 62.5 1.9 30 50-79 24-53 (249)
213 3e70_C DPA, signal recognition 97.5 0.00013 4.4E-09 61.3 5.6 29 50-78 127-155 (328)
214 2yz2_A Putative ABC transporte 97.5 3.7E-05 1.2E-09 62.7 2.2 29 50-78 31-59 (266)
215 1m7g_A Adenylylsulfate kinase; 97.5 7.1E-05 2.4E-09 58.4 3.8 27 51-77 24-50 (211)
216 1rj9_A FTSY, signal recognitio 97.5 6.8E-05 2.3E-09 62.3 3.8 28 51-78 101-128 (304)
217 2ehv_A Hypothetical protein PH 97.5 6.2E-05 2.1E-09 59.7 3.5 25 50-74 28-52 (251)
218 2ghi_A Transport protein; mult 97.5 3.9E-05 1.3E-09 62.3 2.3 28 50-77 44-71 (260)
219 1jjv_A Dephospho-COA kinase; P 97.5 4.2E-05 1.5E-09 59.3 2.4 26 54-80 4-29 (206)
220 2ihy_A ABC transporter, ATP-bi 97.5 3.4E-05 1.2E-09 63.4 1.9 29 50-78 45-73 (279)
221 1g29_1 MALK, maltose transport 97.5 4.4E-05 1.5E-09 65.2 2.6 29 50-78 27-55 (372)
222 2z0h_A DTMP kinase, thymidylat 97.5 6.2E-05 2.1E-09 57.6 3.2 28 54-81 2-32 (197)
223 3lnc_A Guanylate kinase, GMP k 97.5 4.2E-05 1.4E-09 60.6 2.3 28 50-77 25-53 (231)
224 3b85_A Phosphate starvation-in 97.4 4.1E-05 1.4E-09 60.2 2.0 27 51-78 21-47 (208)
225 3upu_A ATP-dependent DNA helic 97.4 0.00019 6.7E-09 62.7 6.5 56 9-77 14-70 (459)
226 3r20_A Cytidylate kinase; stru 97.4 8.3E-05 2.8E-09 59.5 3.8 26 53-78 10-35 (233)
227 2pbr_A DTMP kinase, thymidylat 97.4 6.8E-05 2.3E-09 57.2 3.1 28 54-81 2-32 (195)
228 2nq2_C Hypothetical ABC transp 97.4 4.3E-05 1.5E-09 61.8 2.1 29 50-78 29-57 (253)
229 2w0m_A SSO2452; RECA, SSPF, un 97.4 8.7E-05 3E-09 58.0 3.8 27 50-76 21-47 (235)
230 2v54_A DTMP kinase, thymidylat 97.4 7.9E-05 2.7E-09 57.4 3.5 26 52-77 4-29 (204)
231 2ewv_A Twitching motility prot 97.4 7.9E-05 2.7E-09 63.6 3.7 29 50-78 134-162 (372)
232 1oxx_K GLCV, glucose, ABC tran 97.4 3.3E-05 1.1E-09 65.5 1.3 29 50-78 29-57 (353)
233 2zu0_C Probable ATP-dependent 97.4 7.1E-05 2.4E-09 61.0 3.2 27 50-76 44-70 (267)
234 2qt1_A Nicotinamide riboside k 97.4 6.2E-05 2.1E-09 58.5 2.7 26 51-76 20-45 (207)
235 3gd7_A Fusion complex of cysti 97.4 5.3E-05 1.8E-09 65.1 2.6 28 50-77 45-72 (390)
236 1odf_A YGR205W, hypothetical 3 97.4 0.00026 8.8E-09 58.4 6.5 28 51-78 30-57 (290)
237 2yhs_A FTSY, cell division pro 97.4 0.00012 4.1E-09 64.6 4.7 29 50-78 291-319 (503)
238 1rz3_A Hypothetical protein rb 97.4 0.0001 3.5E-09 57.2 3.8 27 51-77 21-47 (201)
239 2d2e_A SUFC protein; ABC-ATPas 97.4 7.5E-05 2.6E-09 60.2 3.1 26 50-75 27-52 (250)
240 3b5x_A Lipid A export ATP-bind 97.4 0.00026 8.7E-09 63.9 6.7 29 50-78 367-395 (582)
241 3ake_A Cytidylate kinase; CMP 97.4 9E-05 3.1E-09 57.2 3.2 26 54-79 4-29 (208)
242 1ny5_A Transcriptional regulat 97.4 0.0016 5.3E-08 55.8 11.2 48 18-75 136-183 (387)
243 2bbs_A Cystic fibrosis transme 97.4 5.6E-05 1.9E-09 62.4 2.0 29 50-78 62-90 (290)
244 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00012 4E-09 59.2 3.8 25 52-76 4-28 (260)
245 2yl4_A ATP-binding cassette SU 97.4 0.00016 5.5E-09 65.4 5.0 29 50-78 368-396 (595)
246 1lw7_A Transcriptional regulat 97.3 0.00011 3.6E-09 62.5 3.5 28 52-79 170-197 (365)
247 2gza_A Type IV secretion syste 97.3 7.5E-05 2.6E-09 63.5 2.6 29 50-78 173-201 (361)
248 3crm_A TRNA delta(2)-isopenten 97.3 9.7E-05 3.3E-09 61.9 3.2 29 53-81 6-34 (323)
249 1sq5_A Pantothenate kinase; P- 97.3 0.00013 4.5E-09 60.5 3.9 27 51-77 79-105 (308)
250 1vma_A Cell division protein F 97.3 0.00023 7.7E-09 59.2 5.2 29 50-78 102-130 (306)
251 1n0w_A DNA repair protein RAD5 97.3 0.00018 6E-09 56.8 4.4 26 50-75 22-47 (243)
252 2grj_A Dephospho-COA kinase; T 97.3 0.00012 4E-09 56.8 3.1 29 53-81 13-41 (192)
253 2cvh_A DNA repair and recombin 97.3 0.00015 5.2E-09 56.3 3.7 25 50-74 18-42 (220)
254 1uf9_A TT1252 protein; P-loop, 97.3 0.00013 4.5E-09 56.0 3.2 28 52-80 8-35 (203)
255 3zvl_A Bifunctional polynucleo 97.3 8.8E-05 3E-09 64.3 2.4 30 52-81 258-287 (416)
256 2f1r_A Molybdopterin-guanine d 97.3 8.2E-05 2.8E-09 56.6 1.9 27 53-79 3-29 (171)
257 3kta_A Chromosome segregation 97.3 0.00017 5.8E-09 54.6 3.7 26 53-78 27-52 (182)
258 4a82_A Cystic fibrosis transme 97.3 0.00021 7.3E-09 64.4 4.9 29 50-78 365-393 (578)
259 1vht_A Dephospho-COA kinase; s 97.3 0.00015 5.3E-09 56.6 3.5 28 53-81 5-32 (218)
260 1uj2_A Uridine-cytidine kinase 97.3 0.00018 6E-09 57.8 3.9 27 53-79 23-49 (252)
261 1gtv_A TMK, thymidylate kinase 97.3 6.5E-05 2.2E-09 58.3 1.2 25 54-78 2-26 (214)
262 1q3t_A Cytidylate kinase; nucl 97.3 0.00018 6.1E-09 57.2 3.7 28 51-78 15-42 (236)
263 4eaq_A DTMP kinase, thymidylat 97.3 0.0002 7E-09 56.9 4.0 28 51-78 25-52 (229)
264 1cr0_A DNA primase/helicase; R 97.3 0.00018 6.2E-09 59.0 3.8 29 50-78 33-61 (296)
265 2px0_A Flagellar biosynthesis 97.2 0.00036 1.2E-08 57.7 5.5 53 25-78 79-131 (296)
266 3tqc_A Pantothenate kinase; bi 97.2 0.00021 7E-09 59.9 4.0 25 53-77 93-117 (321)
267 2pjz_A Hypothetical protein ST 97.2 9.7E-05 3.3E-09 60.1 2.0 26 52-78 30-55 (263)
268 2pt7_A CAG-ALFA; ATPase, prote 97.2 7.8E-05 2.7E-09 62.7 1.4 28 51-78 170-197 (330)
269 3sop_A Neuronal-specific septi 97.2 0.00018 6.1E-09 58.7 3.4 25 54-78 4-28 (270)
270 3vkg_A Dynein heavy chain, cyt 97.2 0.00033 1.1E-08 73.5 6.0 42 80-122 1425-1471(3245)
271 2oap_1 GSPE-2, type II secreti 97.2 0.0002 6.7E-09 63.7 3.8 28 51-78 259-286 (511)
272 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00017 5.9E-09 63.2 3.2 29 50-78 136-164 (460)
273 1ltq_A Polynucleotide kinase; 97.2 0.0002 7E-09 58.7 3.5 26 53-78 3-29 (301)
274 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00018 6.3E-09 60.1 3.0 24 52-75 123-146 (331)
275 4f4c_A Multidrug resistance pr 97.1 0.0005 1.7E-08 67.7 6.2 30 50-79 442-471 (1321)
276 1nlf_A Regulatory protein REPA 97.1 0.00028 9.5E-09 57.5 3.7 28 50-77 28-55 (279)
277 2h92_A Cytidylate kinase; ross 97.1 0.00027 9.2E-09 55.2 3.3 28 53-80 4-31 (219)
278 2qmh_A HPR kinase/phosphorylas 97.1 0.00021 7E-09 55.8 2.5 27 51-77 33-59 (205)
279 3tqf_A HPR(Ser) kinase; transf 97.1 0.00028 9.7E-09 53.8 3.2 24 51-74 15-38 (181)
280 3dm5_A SRP54, signal recogniti 97.1 0.00057 1.9E-08 59.6 5.5 53 25-77 73-125 (443)
281 3a8t_A Adenylate isopentenyltr 97.1 0.0002 7E-09 60.2 2.5 29 53-81 41-69 (339)
282 3foz_A TRNA delta(2)-isopenten 97.1 0.00031 1.1E-08 58.4 3.4 30 52-81 10-39 (316)
283 1pzn_A RAD51, DNA repair and r 97.1 0.00034 1.2E-08 59.1 3.7 27 50-76 129-155 (349)
284 3cr8_A Sulfate adenylyltranfer 97.1 0.00023 8E-09 63.8 2.7 27 51-77 368-394 (552)
285 3d3q_A TRNA delta(2)-isopenten 97.0 0.00027 9.3E-09 59.5 2.9 27 53-79 8-34 (340)
286 2f6r_A COA synthase, bifunctio 97.0 0.00037 1.3E-08 57.1 3.4 28 53-81 76-103 (281)
287 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00027 9.2E-09 63.2 2.8 29 50-78 45-73 (538)
288 3kl4_A SRP54, signal recogniti 97.0 0.00065 2.2E-08 59.1 5.1 27 51-77 96-122 (433)
289 3exa_A TRNA delta(2)-isopenten 97.0 0.00032 1.1E-08 58.5 3.0 26 53-78 4-29 (322)
290 3b60_A Lipid A export ATP-bind 97.0 0.00026 8.8E-09 63.9 2.4 29 50-78 367-395 (582)
291 2dr3_A UPF0273 protein PH0284; 97.0 0.00049 1.7E-08 54.3 3.8 27 50-76 21-47 (247)
292 1np6_A Molybdopterin-guanine d 96.9 0.00051 1.8E-08 52.3 3.5 25 53-77 7-31 (174)
293 2dpy_A FLII, flagellum-specifi 96.9 0.00045 1.5E-08 60.2 3.5 28 51-78 156-183 (438)
294 1qhl_A Protein (cell division 96.9 0.00012 4.1E-09 58.3 -0.1 25 54-78 29-53 (227)
295 3eph_A TRNA isopentenyltransfe 96.9 0.00052 1.8E-08 59.1 3.7 27 52-78 2-28 (409)
296 3dzd_A Transcriptional regulat 96.9 0.013 4.5E-07 49.7 12.4 47 19-75 129-175 (368)
297 1zu4_A FTSY; GTPase, signal re 96.9 0.00078 2.7E-08 56.3 4.5 29 50-78 103-131 (320)
298 1z6t_A APAF-1, apoptotic prote 96.9 0.0014 4.8E-08 58.7 6.4 50 15-74 120-169 (591)
299 3lda_A DNA repair protein RAD5 96.9 0.00055 1.9E-08 59.0 3.6 25 50-74 176-200 (400)
300 1oix_A RAS-related protein RAB 96.9 0.00051 1.7E-08 52.5 3.1 23 54-76 31-53 (191)
301 3euj_A Chromosome partition pr 96.9 0.0006 2.1E-08 60.1 3.9 26 53-78 30-55 (483)
302 3hr8_A Protein RECA; alpha and 96.9 0.00058 2E-08 57.9 3.7 70 50-122 59-137 (356)
303 2vp4_A Deoxynucleoside kinase; 96.9 0.00032 1.1E-08 55.6 1.8 25 51-75 19-43 (230)
304 2f9l_A RAB11B, member RAS onco 96.9 0.00055 1.9E-08 52.5 3.1 23 53-75 6-28 (199)
305 1xjc_A MOBB protein homolog; s 96.9 0.00076 2.6E-08 51.2 3.8 25 53-77 5-29 (169)
306 3gmt_A Adenylate kinase; ssgci 96.8 0.0006 2E-08 54.3 3.1 29 53-81 9-37 (230)
307 3j16_B RLI1P; ribosome recycli 96.8 0.00047 1.6E-08 62.5 2.8 30 50-79 101-130 (608)
308 2qm8_A GTPase/ATPase; G protei 96.8 0.00078 2.7E-08 56.6 4.0 28 50-77 53-80 (337)
309 1a7j_A Phosphoribulokinase; tr 96.8 0.00027 9.2E-09 58.2 1.1 25 53-77 6-30 (290)
310 2obl_A ESCN; ATPase, hydrolase 96.8 0.00069 2.4E-08 57.3 3.5 28 51-78 70-97 (347)
311 4f4c_A Multidrug resistance pr 96.8 0.001 3.5E-08 65.5 5.1 30 50-79 1103-1132(1321)
312 2ged_A SR-beta, signal recogni 96.8 0.0016 5.3E-08 49.3 5.2 24 52-75 48-71 (193)
313 3ld9_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 52.7 4.2 38 51-88 20-61 (223)
314 3qf4_B Uncharacterized ABC tra 96.8 0.00032 1.1E-08 63.5 1.2 29 50-78 379-407 (598)
315 3ozx_A RNAse L inhibitor; ATP 96.8 0.00047 1.6E-08 61.7 2.2 30 50-79 23-52 (538)
316 2axn_A 6-phosphofructo-2-kinas 96.8 0.0009 3.1E-08 59.6 3.9 29 52-80 35-63 (520)
317 3ozx_A RNAse L inhibitor; ATP 96.8 0.00044 1.5E-08 61.9 1.9 28 51-78 293-320 (538)
318 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00054 1.8E-08 61.3 2.4 28 51-78 311-338 (538)
319 3bk7_A ABC transporter ATP-bin 96.7 0.00051 1.8E-08 62.3 2.3 29 50-78 115-143 (607)
320 2ocp_A DGK, deoxyguanosine kin 96.7 0.00086 2.9E-08 53.3 3.4 26 52-77 2-27 (241)
321 3qf4_A ABC transporter, ATP-bi 96.7 0.00036 1.2E-08 63.0 1.1 29 50-78 367-395 (587)
322 4b3f_X DNA-binding protein smu 96.7 0.0029 1E-07 57.6 7.1 42 17-72 184-225 (646)
323 3fdi_A Uncharacterized protein 96.7 0.00084 2.9E-08 52.2 3.0 29 53-81 7-35 (201)
324 3bh0_A DNAB-like replicative h 96.7 0.003 1E-07 52.4 6.5 58 19-76 25-92 (315)
325 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0013 4.4E-08 48.6 3.8 24 53-76 24-47 (149)
326 2gj8_A MNME, tRNA modification 96.7 0.00082 2.8E-08 50.4 2.8 25 51-75 3-27 (172)
327 1u0l_A Probable GTPase ENGC; p 96.7 0.00056 1.9E-08 56.5 2.0 27 52-78 169-195 (301)
328 1tf7_A KAIC; homohexamer, hexa 96.7 0.00096 3.3E-08 59.4 3.6 28 50-77 37-66 (525)
329 3bk7_A ABC transporter ATP-bin 96.7 0.00063 2.2E-08 61.7 2.4 28 51-78 381-408 (607)
330 4edh_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 51.9 3.7 37 52-88 6-44 (213)
331 2qag_B Septin-6, protein NEDD5 96.7 0.00065 2.2E-08 58.9 2.4 25 51-75 39-65 (427)
332 2c9o_A RUVB-like 1; hexameric 96.7 0.0049 1.7E-07 53.7 7.9 90 87-195 347-438 (456)
333 2zr9_A Protein RECA, recombina 96.7 0.0011 3.9E-08 56.0 3.7 71 50-122 59-137 (349)
334 2zts_A Putative uncharacterize 96.7 0.0014 4.7E-08 51.7 4.0 25 50-74 28-52 (251)
335 1g8f_A Sulfate adenylyltransfe 96.7 0.0011 3.6E-08 58.9 3.6 26 53-78 396-421 (511)
336 1ls1_A Signal recognition part 96.7 0.0023 7.7E-08 52.8 5.4 28 51-78 97-124 (295)
337 1v5w_A DMC1, meiotic recombina 96.6 0.0016 5.4E-08 54.8 4.5 26 50-75 120-145 (343)
338 1tq4_A IIGP1, interferon-induc 96.6 0.0013 4.5E-08 56.8 4.1 26 53-78 70-95 (413)
339 3lv8_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 52.7 3.6 37 52-88 27-66 (236)
340 2orw_A Thymidine kinase; TMTK, 96.6 0.0014 4.7E-08 50.2 3.8 25 52-76 3-27 (184)
341 1pui_A ENGB, probable GTP-bind 96.6 0.00038 1.3E-08 53.6 0.5 27 50-76 24-50 (210)
342 4a1f_A DNAB helicase, replicat 96.6 0.0046 1.6E-07 52.0 6.9 28 50-77 44-71 (338)
343 2ffh_A Protein (FFH); SRP54, s 96.6 0.0024 8.3E-08 55.4 5.3 28 51-78 97-124 (425)
344 2z43_A DNA repair and recombin 96.6 0.0015 5.3E-08 54.4 4.0 27 50-76 105-131 (324)
345 2rcn_A Probable GTPase ENGC; Y 96.6 0.0013 4.3E-08 55.9 3.5 27 51-77 214-240 (358)
346 3v9p_A DTMP kinase, thymidylat 96.6 0.0011 3.8E-08 52.6 3.0 28 52-79 25-52 (227)
347 1jr3_D DNA polymerase III, del 96.6 0.0063 2.1E-07 50.8 7.7 58 89-151 125-183 (343)
348 2zej_A Dardarin, leucine-rich 96.6 0.001 3.4E-08 50.3 2.5 22 54-75 4-25 (184)
349 2dyk_A GTP-binding protein; GT 96.5 0.0015 5.1E-08 47.6 3.3 22 54-75 3-24 (161)
350 3tmk_A Thymidylate kinase; pho 96.5 0.0018 6.2E-08 51.0 3.9 27 52-78 5-31 (216)
351 2wji_A Ferrous iron transport 96.5 0.0013 4.5E-08 48.7 3.0 22 53-74 4-25 (165)
352 3g5u_A MCG1178, multidrug resi 96.5 0.002 6.7E-08 63.3 4.9 29 50-78 1057-1085(1284)
353 1p5z_B DCK, deoxycytidine kina 96.5 0.00059 2E-08 55.0 1.0 27 51-77 23-49 (263)
354 1z2a_A RAS-related protein RAB 96.5 0.0015 5E-08 48.0 3.1 22 53-74 6-27 (168)
355 2v3c_C SRP54, signal recogniti 96.5 0.0023 7.8E-08 55.7 4.7 26 52-77 99-124 (432)
356 1bif_A 6-phosphofructo-2-kinas 96.5 0.0018 6E-08 56.8 3.9 28 52-79 39-66 (469)
357 2yv5_A YJEQ protein; hydrolase 96.5 0.0016 5.3E-08 53.9 3.4 26 52-78 165-190 (302)
358 2ce2_X GTPase HRAS; signaling 96.5 0.0016 5.3E-08 47.5 3.0 22 54-75 5-26 (166)
359 2i1q_A DNA repair and recombin 96.5 0.0019 6.4E-08 53.6 3.8 26 50-75 96-121 (322)
360 3j16_B RLI1P; ribosome recycli 96.5 0.0012 4.1E-08 59.9 2.8 26 53-78 379-404 (608)
361 1kao_A RAP2A; GTP-binding prot 96.5 0.0017 5.8E-08 47.4 3.2 22 53-74 4-25 (167)
362 2wjg_A FEOB, ferrous iron tran 96.4 0.0014 4.7E-08 49.3 2.6 22 53-74 8-29 (188)
363 1tf7_A KAIC; homohexamer, hexa 96.4 0.0018 6E-08 57.6 3.7 28 50-77 279-306 (525)
364 1nrj_B SR-beta, signal recogni 96.4 0.0021 7.2E-08 49.7 3.7 24 53-76 13-36 (218)
365 3e1s_A Exodeoxyribonuclease V, 96.4 0.0019 6.4E-08 58.2 3.8 25 53-77 205-229 (574)
366 1u8z_A RAS-related protein RAL 96.4 0.0018 6.2E-08 47.3 3.1 23 53-75 5-27 (168)
367 1m8p_A Sulfate adenylyltransfe 96.4 0.0019 6.6E-08 58.1 3.8 26 52-77 396-421 (573)
368 3qks_A DNA double-strand break 96.4 0.0022 7.5E-08 49.8 3.7 26 52-77 23-48 (203)
369 1ek0_A Protein (GTP-binding pr 96.4 0.0019 6.4E-08 47.4 3.1 22 53-74 4-25 (170)
370 1z0j_A RAB-22, RAS-related pro 96.4 0.0019 6.6E-08 47.4 3.2 23 53-75 7-29 (170)
371 1w1w_A Structural maintenance 96.4 0.002 6.9E-08 55.7 3.7 27 52-78 26-52 (430)
372 1t9h_A YLOQ, probable GTPase E 96.4 0.00047 1.6E-08 57.3 -0.3 28 51-78 172-199 (307)
373 4tmk_A Protein (thymidylate ki 96.4 0.0021 7.3E-08 50.4 3.5 37 52-88 3-42 (213)
374 2r2a_A Uncharacterized protein 96.4 0.0018 6.2E-08 50.3 3.0 23 53-75 6-28 (199)
375 1z08_A RAS-related protein RAB 96.4 0.002 7E-08 47.3 3.2 23 53-75 7-29 (170)
376 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.002 7E-08 47.7 3.2 22 53-74 8-29 (177)
377 2r6a_A DNAB helicase, replicat 96.4 0.0034 1.2E-07 54.8 5.0 28 50-77 201-228 (454)
378 1ko7_A HPR kinase/phosphatase; 96.4 0.0019 6.6E-08 53.7 3.3 24 51-74 143-166 (314)
379 1ky3_A GTP-binding protein YPT 96.4 0.0021 7.1E-08 47.8 3.2 22 53-74 9-30 (182)
380 1g16_A RAS-related protein SEC 96.4 0.002 6.7E-08 47.4 3.0 22 53-74 4-25 (170)
381 1u94_A RECA protein, recombina 96.4 0.0024 8.2E-08 54.1 3.8 71 50-122 61-139 (356)
382 3hdt_A Putative kinase; struct 96.3 0.002 6.7E-08 51.0 3.0 29 53-81 15-43 (223)
383 2wsm_A Hydrogenase expression/ 96.3 0.0042 1.4E-07 48.1 4.9 24 53-76 31-54 (221)
384 2nzj_A GTP-binding protein REM 96.3 0.0021 7.2E-08 47.5 3.0 22 53-74 5-26 (175)
385 1c1y_A RAS-related protein RAP 96.3 0.0023 7.7E-08 46.9 3.1 22 53-74 4-25 (167)
386 2lkc_A Translation initiation 96.3 0.0026 8.9E-08 47.2 3.5 23 52-74 8-30 (178)
387 2www_A Methylmalonic aciduria 96.3 0.0027 9.1E-08 53.6 4.0 25 52-76 74-98 (349)
388 1nij_A Hypothetical protein YJ 96.3 0.0014 4.9E-08 54.5 2.2 24 53-76 5-28 (318)
389 2erx_A GTP-binding protein DI- 96.3 0.0019 6.5E-08 47.4 2.7 22 53-74 4-25 (172)
390 1upt_A ARL1, ADP-ribosylation 96.3 0.0029 9.9E-08 46.5 3.7 23 52-74 7-29 (171)
391 1r2q_A RAS-related protein RAB 96.3 0.0024 8.1E-08 46.8 3.1 22 53-74 7-28 (170)
392 1x6v_B Bifunctional 3'-phospho 96.3 0.0024 8.2E-08 58.0 3.7 25 52-76 52-76 (630)
393 1j8m_F SRP54, signal recogniti 96.3 0.0036 1.2E-07 51.6 4.5 26 52-77 98-123 (297)
394 2b8t_A Thymidine kinase; deoxy 96.3 0.003 1E-07 50.0 3.8 27 50-76 10-36 (223)
395 3bc1_A RAS-related protein RAB 96.3 0.0024 8.2E-08 47.9 3.1 22 53-74 12-33 (195)
396 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0028 9.5E-08 53.8 3.8 24 53-76 24-47 (365)
397 3ice_A Transcription terminati 96.3 0.0028 9.6E-08 54.3 3.7 27 51-77 173-199 (422)
398 1knx_A Probable HPR(Ser) kinas 96.3 0.0022 7.6E-08 53.3 3.0 25 50-74 145-169 (312)
399 1r8s_A ADP-ribosylation factor 96.3 0.0026 8.9E-08 46.5 3.1 21 54-74 2-22 (164)
400 2fn4_A P23, RAS-related protei 96.3 0.0025 8.5E-08 47.3 3.1 23 53-75 10-32 (181)
401 3q85_A GTP-binding protein REM 96.2 0.0024 8.3E-08 46.9 3.0 21 54-74 4-24 (169)
402 3vkg_A Dynein heavy chain, cyt 96.2 0.0062 2.1E-07 64.2 6.8 26 53-78 605-630 (3245)
403 2y8e_A RAB-protein 6, GH09086P 96.2 0.0025 8.7E-08 47.2 3.0 22 53-74 15-36 (179)
404 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0027 9.3E-08 47.5 3.2 22 53-74 5-26 (189)
405 4aby_A DNA repair protein RECN 96.2 0.0011 3.6E-08 56.9 0.9 27 50-77 59-85 (415)
406 3con_A GTPase NRAS; structural 96.2 0.0028 9.4E-08 47.8 3.1 23 53-75 22-44 (190)
407 2iw3_A Elongation factor 3A; a 96.2 0.0026 9E-08 60.5 3.6 25 50-74 459-483 (986)
408 1z0f_A RAB14, member RAS oncog 96.2 0.0028 9.6E-08 46.9 3.1 23 53-75 16-38 (179)
409 3clv_A RAB5 protein, putative; 96.2 0.0034 1.2E-07 47.4 3.6 23 53-75 8-30 (208)
410 2oil_A CATX-8, RAS-related pro 96.2 0.0028 9.5E-08 47.9 3.1 22 53-74 26-47 (193)
411 3q72_A GTP-binding protein RAD 96.2 0.0024 8.2E-08 46.8 2.7 22 53-74 3-24 (166)
412 2hxs_A RAB-26, RAS-related pro 96.2 0.0025 8.5E-08 47.3 2.8 22 53-74 7-28 (178)
413 2a9k_A RAS-related protein RAL 96.2 0.0029 9.9E-08 47.2 3.1 22 53-74 19-40 (187)
414 3cmu_A Protein RECA, recombina 96.2 0.0028 9.5E-08 64.3 3.8 28 50-77 1425-1452(2050)
415 2hf9_A Probable hydrogenase ni 96.2 0.0074 2.5E-07 46.8 5.6 25 52-76 38-62 (226)
416 2efe_B Small GTP-binding prote 96.2 0.003 1E-07 47.0 3.2 22 53-74 13-34 (181)
417 3k53_A Ferrous iron transport 96.2 0.0025 8.6E-08 51.5 2.9 23 53-75 4-26 (271)
418 1c9k_A COBU, adenosylcobinamid 96.2 0.0027 9.2E-08 48.6 2.9 21 55-75 2-22 (180)
419 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0029 9.9E-08 47.6 3.0 22 53-74 8-29 (184)
420 2bme_A RAB4A, RAS-related prot 96.1 0.0029 1E-07 47.3 3.0 22 53-74 11-32 (186)
421 2qag_C Septin-7; cell cycle, c 96.1 0.002 6.8E-08 55.8 2.2 23 54-76 33-55 (418)
422 2q6t_A DNAB replication FORK h 96.1 0.0052 1.8E-07 53.4 4.8 27 50-76 198-224 (444)
423 2qnr_A Septin-2, protein NEDD5 96.1 0.0022 7.6E-08 52.9 2.4 23 53-75 19-41 (301)
424 3tw8_B RAS-related protein RAB 96.1 0.0029 1E-07 46.9 2.9 22 53-74 10-31 (181)
425 2iw3_A Elongation factor 3A; a 96.1 0.0013 4.3E-08 62.7 0.9 29 50-78 697-725 (986)
426 3sfz_A APAF-1, apoptotic pepti 96.1 0.007 2.4E-07 58.3 6.2 51 14-74 119-169 (1249)
427 2g6b_A RAS-related protein RAB 96.1 0.0033 1.1E-07 46.7 3.1 22 53-74 11-32 (180)
428 1m2o_B GTP-binding protein SAR 96.1 0.0034 1.2E-07 47.7 3.2 22 53-74 24-45 (190)
429 3ihw_A Centg3; RAS, centaurin, 96.1 0.0035 1.2E-07 47.4 3.2 21 54-74 22-42 (184)
430 3g5u_A MCG1178, multidrug resi 96.1 0.0017 5.8E-08 63.8 1.7 29 50-78 414-442 (1284)
431 3kkq_A RAS-related protein M-R 96.1 0.0035 1.2E-07 46.8 3.1 22 53-74 19-40 (183)
432 1svi_A GTP-binding protein YSX 96.1 0.0032 1.1E-07 47.6 2.9 22 53-74 24-45 (195)
433 1wb9_A DNA mismatch repair pro 96.1 0.0035 1.2E-07 58.6 3.7 26 51-76 606-631 (800)
434 2gf9_A RAS-related protein RAB 96.1 0.0035 1.2E-07 47.2 3.1 22 53-74 23-44 (189)
435 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0036 1.2E-07 46.7 3.1 22 53-74 6-27 (186)
436 2a5y_B CED-4; apoptosis; HET: 96.1 0.01 3.6E-07 52.8 6.6 44 22-74 131-174 (549)
437 3t1o_A Gliding protein MGLA; G 96.1 0.0036 1.2E-07 47.1 3.1 25 53-77 15-39 (198)
438 3tkl_A RAS-related protein RAB 96.0 0.0037 1.3E-07 47.2 3.1 22 53-74 17-38 (196)
439 2bov_A RAla, RAS-related prote 96.0 0.0037 1.3E-07 47.6 3.1 22 53-74 15-36 (206)
440 2j37_W Signal recognition part 96.0 0.0066 2.2E-07 53.8 5.1 27 51-77 100-126 (504)
441 1ewq_A DNA mismatch repair pro 96.0 0.0038 1.3E-07 58.1 3.7 25 52-76 576-600 (765)
442 3pqc_A Probable GTP-binding pr 96.0 0.0027 9.2E-08 47.8 2.3 23 53-75 24-46 (195)
443 2p5s_A RAS and EF-hand domain 96.0 0.0043 1.5E-07 47.3 3.4 22 53-74 29-50 (199)
444 1xp8_A RECA protein, recombina 96.0 0.0043 1.5E-07 52.8 3.7 71 50-122 72-150 (366)
445 2fg5_A RAB-22B, RAS-related pr 96.0 0.0038 1.3E-07 47.3 3.1 22 53-74 24-45 (192)
446 3lxx_A GTPase IMAP family memb 96.0 0.0031 1.1E-07 49.8 2.7 22 53-74 30-51 (239)
447 3bgw_A DNAB-like replicative h 96.0 0.015 5.2E-07 50.6 7.3 27 50-76 195-221 (444)
448 3szr_A Interferon-induced GTP- 96.0 0.0021 7.1E-08 58.3 1.8 24 54-77 47-70 (608)
449 2o5v_A DNA replication and rep 96.0 0.0046 1.6E-07 52.4 3.8 23 53-75 27-49 (359)
450 2r8r_A Sensor protein; KDPD, P 96.0 0.0046 1.6E-07 49.1 3.5 25 53-77 7-31 (228)
451 3bwd_D RAC-like GTP-binding pr 96.0 0.0041 1.4E-07 46.3 3.1 22 53-74 9-30 (182)
452 1vg8_A RAS-related protein RAB 96.0 0.0041 1.4E-07 47.4 3.2 22 53-74 9-30 (207)
453 2p67_A LAO/AO transport system 96.0 0.0047 1.6E-07 51.8 3.8 27 51-77 55-81 (341)
454 3dz8_A RAS-related protein RAB 96.0 0.0038 1.3E-07 47.2 3.0 23 53-75 24-46 (191)
455 2cxx_A Probable GTP-binding pr 96.0 0.0033 1.1E-07 47.1 2.6 21 54-74 3-23 (190)
456 3c5c_A RAS-like protein 12; GD 96.0 0.0042 1.4E-07 47.0 3.2 22 53-74 22-43 (187)
457 2gks_A Bifunctional SAT/APS ki 96.0 0.0042 1.4E-07 55.6 3.7 27 52-78 372-398 (546)
458 1z06_A RAS-related protein RAB 96.0 0.0042 1.4E-07 46.8 3.2 22 53-74 21-42 (189)
459 2atv_A RERG, RAS-like estrogen 96.0 0.005 1.7E-07 46.7 3.6 23 52-74 28-50 (196)
460 2gk6_A Regulator of nonsense t 96.0 0.0075 2.6E-07 54.7 5.3 24 53-76 196-219 (624)
461 1zj6_A ADP-ribosylation factor 96.0 0.006 2.1E-07 45.8 4.0 24 51-74 15-38 (187)
462 3t5g_A GTP-binding protein RHE 96.0 0.0041 1.4E-07 46.3 3.0 22 53-74 7-28 (181)
463 2a5j_A RAS-related protein RAB 96.0 0.0043 1.5E-07 46.9 3.1 21 54-74 23-43 (191)
464 1zd9_A ADP-ribosylation factor 95.9 0.0044 1.5E-07 46.8 3.1 22 53-74 23-44 (188)
465 1x3s_A RAS-related protein RAB 95.9 0.0044 1.5E-07 46.6 3.1 22 53-74 16-37 (195)
466 3oes_A GTPase rhebl1; small GT 95.9 0.0043 1.5E-07 47.4 3.0 22 53-74 25-46 (201)
467 3reg_A RHO-like small GTPase; 95.9 0.0045 1.6E-07 46.8 3.1 22 53-74 24-45 (194)
468 2bcg_Y Protein YP2, GTP-bindin 95.9 0.0043 1.5E-07 47.5 3.0 22 53-74 9-30 (206)
469 2gf0_A GTP-binding protein DI- 95.9 0.0056 1.9E-07 46.3 3.6 22 53-74 9-30 (199)
470 2iwr_A Centaurin gamma 1; ANK 95.9 0.0034 1.2E-07 46.7 2.3 22 53-74 8-29 (178)
471 3cph_A RAS-related protein SEC 95.9 0.0047 1.6E-07 47.3 3.1 22 53-74 21-42 (213)
472 1w36_D RECD, exodeoxyribonucle 95.9 0.0047 1.6E-07 56.0 3.5 24 53-76 165-188 (608)
473 1zbd_A Rabphilin-3A; G protein 95.9 0.0039 1.3E-07 47.5 2.6 22 53-74 9-30 (203)
474 3io5_A Recombination and repai 95.9 0.0046 1.6E-07 51.6 3.2 26 51-76 27-52 (333)
475 1moz_A ARL1, ADP-ribosylation 95.9 0.0034 1.1E-07 46.9 2.2 24 51-74 17-40 (183)
476 1q57_A DNA primase/helicase; d 95.9 0.0066 2.3E-07 53.5 4.4 28 50-77 240-267 (503)
477 2ew1_A RAS-related protein RAB 95.9 0.0046 1.6E-07 47.6 3.0 22 53-74 27-48 (201)
478 4i1u_A Dephospho-COA kinase; s 95.9 0.0047 1.6E-07 48.4 3.0 28 53-81 10-37 (210)
479 1gwn_A RHO-related GTP-binding 95.9 0.0047 1.6E-07 47.7 3.0 22 53-74 29-50 (205)
480 1fzq_A ADP-ribosylation factor 95.9 0.0052 1.8E-07 46.2 3.2 23 53-75 17-39 (181)
481 1ksh_A ARF-like protein 2; sma 95.8 0.0053 1.8E-07 46.0 3.2 24 51-74 17-40 (186)
482 3qkt_A DNA double-strand break 95.8 0.006 2E-07 51.1 3.8 23 53-75 24-46 (339)
483 4hlc_A DTMP kinase, thymidylat 95.8 0.0068 2.3E-07 47.2 3.7 25 53-77 3-27 (205)
484 1f6b_A SAR1; gtpases, N-termin 95.8 0.005 1.7E-07 47.1 2.8 23 52-74 25-47 (198)
485 2fh5_B SR-beta, signal recogni 95.8 0.0055 1.9E-07 47.1 3.1 22 53-74 8-29 (214)
486 2cjw_A GTP-binding protein GEM 95.8 0.0056 1.9E-07 46.6 3.1 22 53-74 7-28 (192)
487 3llm_A ATP-dependent RNA helic 95.8 0.0061 2.1E-07 48.1 3.4 22 52-73 76-97 (235)
488 2fv8_A H6, RHO-related GTP-bin 95.8 0.0056 1.9E-07 47.0 3.1 22 53-74 26-47 (207)
489 3p32_A Probable GTPase RV1496/ 95.8 0.0059 2E-07 51.5 3.5 24 53-76 80-103 (355)
490 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0072 2.5E-07 51.5 3.9 26 51-76 34-59 (392)
491 2fu5_C RAS-related protein RAB 95.7 0.0033 1.1E-07 47.0 1.6 22 53-74 9-30 (183)
492 2atx_A Small GTP binding prote 95.7 0.0061 2.1E-07 46.0 3.1 23 53-75 19-41 (194)
493 3b1v_A Ferrous iron uptake tra 95.7 0.0047 1.6E-07 50.3 2.4 22 53-74 4-25 (272)
494 2gco_A H9, RHO-related GTP-bin 95.7 0.0063 2.1E-07 46.5 3.0 22 53-74 26-47 (201)
495 4bas_A ADP-ribosylation factor 95.7 0.0057 2E-07 46.2 2.8 22 53-74 18-39 (199)
496 2o52_A RAS-related protein RAB 95.7 0.0059 2E-07 46.7 2.8 22 53-74 26-47 (200)
497 1ega_A Protein (GTP-binding pr 95.7 0.005 1.7E-07 50.7 2.6 23 53-75 9-31 (301)
498 2h17_A ADP-ribosylation factor 95.6 0.0044 1.5E-07 46.4 2.0 22 53-74 22-43 (181)
499 3ux8_A Excinuclease ABC, A sub 95.6 0.0036 1.2E-07 57.3 1.8 24 50-73 346-369 (670)
500 3iby_A Ferrous iron transport 95.6 0.0054 1.9E-07 49.3 2.7 22 54-75 3-24 (256)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=291.88 Aligned_cols=188 Identities=32% Similarity=0.525 Sum_probs=165.2
Q ss_pred hhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-----
Q psy15622 5 IKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----- 78 (217)
Q Consensus 5 ~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~----- 78 (217)
+.+....+.|+++|+||+|++++++.|++.+.+|+.+|.+|...+ .||+|+|||||||||||++|+|+|+.++.
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 455567788999999999999999999999999999999999877 78899999999999999999999986665
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
++++|
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA 293 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA 293 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence 45699
Q ss_pred cCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHH
Q psy15622 84 SNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAA 161 (217)
Q Consensus 84 t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~ 161 (217)
||+|+.||++++| ||++.|+||+|+.++|.+||+.+++++++..+++++.||+.++||||+||.++|++|++.|+++.
T Consensus 294 TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 294 TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999998764
Q ss_pred HhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15622 162 IRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEW 209 (217)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~ 209 (217)
...||.+||..|++++.|......+...+.|
T Consensus 374 -----------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 374 -----------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp -----------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred -----------------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 4569999999999998765444444434443
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=284.17 Aligned_cols=184 Identities=32% Similarity=0.538 Sum_probs=160.3
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+.+.|+++|+||+|++++++.|++.+.+|+.+|+.|..++ .|++|+|||||||||||++|+++|+.++.
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 4578999999999999999999999999999999999887 78899999999999999999999986665
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
++++|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 4569999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.||++++| ||++.|+|++|+.++|.+||+.+++++.+..+++++.||+.++||||+||.++|++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999999899999999999999999999999999999999875
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVT-AADIRQFEEWN 210 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~-~~~i~~~~~~~ 210 (217)
...+|.+||..|++++.+... +.....|.+|.
T Consensus 435 ------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 456999999999999865332 34556677773
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-40 Score=284.98 Aligned_cols=177 Identities=31% Similarity=0.512 Sum_probs=163.5
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
..+.|+++|+||+|++++++.|++.+.+|+.+|.+|...+ .+++|+|||||||||||++|+|+|+.++.
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 5678999999999999999999999999999999999887 77899999999999999999999986665
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
++++|||+|+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 4669999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.||++++| ||++.|+|++|+.++|.+||+.+++++.+..+++++.||+.++||||+||.++|++|++.|+++.
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~----- 407 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER----- 407 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCCCCCHHHH
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADI 203 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i 203 (217)
...||.+||..|++++.|+.+.+++
T Consensus 408 ------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 ------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp ------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred ------------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 4569999999999998876655544
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-39 Score=280.90 Aligned_cols=175 Identities=30% Similarity=0.513 Sum_probs=162.8
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
...+.|+++|+||+|++++++.|++.+.+|+.+|..|...+ .||+|+|||||||||||++|+|+|+.++.
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 45678999999999999999999999999999999999877 77899999999999999999999996665
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
++++|||+|
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 456999999
Q ss_pred CCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+.||++++| ||++.|+||+|+.++|.+||+.+++++.+..+++++.||+.++||||+||.++|++|++.|+++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCcccccccccccCCCccHHHHHHHHHhcCCCCCH
Q psy15622 166 SVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTA 200 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~ 200 (217)
...|+.+||..|+++++|+.+.
T Consensus 407 -------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 -------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp -------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred -------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 4579999999999999987653
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=282.38 Aligned_cols=179 Identities=32% Similarity=0.550 Sum_probs=163.1
Q ss_pred hhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------
Q psy15622 6 KRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------ 78 (217)
Q Consensus 6 ~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------ 78 (217)
..-...+.|+++|+||+|++++++.|++.+.+|+.+|.+|...+ .||+|+|||||||||||++|+++|+.++.
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34456678999999999999999999999999999999999887 78899999999999999999999997665
Q ss_pred --------------------------------------------------------------------------hhcccc
Q psy15622 79 --------------------------------------------------------------------------VHCGAS 84 (217)
Q Consensus 79 --------------------------------------------------------------------------~~~~~t 84 (217)
++++||
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 466999
Q ss_pred CCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHH
Q psy15622 85 NFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAI 162 (217)
Q Consensus 85 ~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~ 162 (217)
|+|+.||++++| ||++.|+||+|+.++|.+||+.+++++.+..++|++.+|+.++||||+||.++|++|++.|+++.
T Consensus 328 Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~- 406 (437)
T 4b4t_L 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD- 406 (437)
T ss_dssp SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 999999999999 79999999999999999999999999998889999999999999999999999999999998764
Q ss_pred hCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHH
Q psy15622 163 RGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAA 201 (217)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~ 201 (217)
...||.+||..|++++.|+...+
T Consensus 407 ----------------~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 407 ----------------RDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp ----------------CSSBCHHHHHHHHHHHHHTCC--
T ss_pred ----------------CCCCCHHHHHHHHHHHHhccCcc
Confidence 45699999999999998865544
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-38 Score=274.29 Aligned_cols=178 Identities=33% Similarity=0.469 Sum_probs=161.5
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
...+.|+++|+||+|++++++.|++.+.+|+.+|..|...+ .|++|+|||||||||||++|+++|+.++.
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 35678999999999999999999999999999999999877 78899999999999999999999986665
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
++++|||++
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 466999999
Q ss_pred CCCcHHHHh--hcccccccc-CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 88 WNIDDAFLR--RLEKRIYVP-LPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~-~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
+.||++++| ||+..|+|| +|+..+|..||+.+++++.+..+++++.+|..++||||+||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 999999999 999999997 89999999999999999999899999999999999999999999999999998864
Q ss_pred CCCcccccccccccCCCccHHHHHHHHHh-cCCCCCHHHH
Q psy15622 165 KSVPQIQAIPMAQLKRPVTKADFEMAIAK-CRKTVTAADI 203 (217)
Q Consensus 165 ~~~~~~~~~~~~~~~~~vt~~df~~al~~-~~p~~~~~~i 203 (217)
...|+.+||..|+.. ++++.+.+++
T Consensus 399 --------------~~~i~~~d~~~A~~~~~~~~~~~~~~ 424 (428)
T 4b4t_K 399 --------------RYVILQSDLEEAYATQVKTDNTVDKF 424 (428)
T ss_dssp --------------CSSBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred --------------CCCCCHHHHHHHHHHhhCccCCccHh
Confidence 456999999999976 4555554443
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=258.82 Aligned_cols=208 Identities=38% Similarity=0.711 Sum_probs=179.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh-ch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY-NQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~-~~--------- 78 (217)
++.+.|+++|+||+|++++++.|++.+.+|+.++.+|.....|++++||+||||||||++|+++|+.+ +.
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999998766788999999999999999999999866 22
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
.++++||.++.
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 35589999999
Q ss_pred CcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc
Q psy15622 90 IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP 168 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~ 168 (217)
+|++++|||+..++++.|+.++|.+|++.++...+.. .+.++..|++.++||||+||..+|++|...|+++........
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999887654 678899999999999999999999999999999976432100
Q ss_pred c-------------------------------ccccc-ccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 169 Q-------------------------------IQAIP-MAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 169 ~-------------------------------~~~~~-~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
. ..... +.....+||.+||..|+++++|++++++++.|++|.++||.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred hhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence 0 00000 011235799999999999999999999999999999999974
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-39 Score=302.61 Aligned_cols=210 Identities=37% Similarity=0.618 Sum_probs=134.8
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
|....+.|+++|+|++|++++++.|.+.+.+|+.+|..|...+ .+++++|||||||||||++|+++|+.++.
T Consensus 465 r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEecc
Confidence 3456678999999999999999999999999999999998876 78899999999999999999999985554
Q ss_pred -------------------------------------------------------------------------hhccccC
Q psy15622 79 -------------------------------------------------------------------------VHCGASN 85 (217)
Q Consensus 79 -------------------------------------------------------------------------~~~~~t~ 85 (217)
+++++||
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN 624 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC
Confidence 4569999
Q ss_pred CCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 86 FPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 86 ~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
+|+.||++++| ||++.+++|+|+.++|.+||+.++++..+..+++++.||+.++||||+||.++|++|++.|+++.+.
T Consensus 625 ~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp CSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred CchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999889999999999999999999999999999999999875
Q ss_pred CCCCcc--------cccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 164 GKSVPQ--------IQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 164 ~~~~~~--------~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
...... ..........++|+.+||.+|+++++||++.+++++|++|.++|+++
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp -----------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 432111 01111223346799999999999999999999999999999999874
No 9
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.2e-35 Score=254.62 Aligned_cols=215 Identities=37% Similarity=0.617 Sum_probs=173.7
Q ss_pred hhhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---
Q psy15622 2 KRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--- 78 (217)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--- 78 (217)
++.+.+.+..+.|+++|+||+|++++++.|.+.+.+|+.++..+.....++.++||+||||||||++|+++|+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 34 RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp -------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred HHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 44566667778899999999999999999999999999999999886678899999999999999999999985543
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
+++++
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 35589
Q ss_pred cCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHH
Q psy15622 84 SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAI 162 (217)
Q Consensus 84 t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~ 162 (217)
||.++.+++++++||+..++++.|+.++|.+|++.++...+.. .+.++..|++.++||+|+||..+|++|++.|+++..
T Consensus 194 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 194 TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp ESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653 677899999999999999999999999999999875
Q ss_pred hCCCCcc-------------------------ccccc-ccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 163 RGKSVPQ-------------------------IQAIP-MAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 163 ~~~~~~~-------------------------~~~~~-~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
....... ..... ......+||.+||..|++.++|+++++++..|++|.++||..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 274 SATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp HCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred HhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 4311000 00000 111246799999999999999999999999999999999963
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.3e-35 Score=251.10 Aligned_cols=208 Identities=38% Similarity=0.643 Sum_probs=179.9
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.+..++|+++|+||+|++++++.|.+.+.+|+.++..+.....|+.++||+||||||||++|+++|+.++.
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 45678899999999999999999999999999999999887788899999999999999999999985443
Q ss_pred ---------------------------------------------------------------------hhccccCCCCC
Q psy15622 79 ---------------------------------------------------------------------VHCGASNFPWN 89 (217)
Q Consensus 79 ---------------------------------------------------------------------~~~~~t~~~~~ 89 (217)
.++++||.++.
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 45589999999
Q ss_pred CcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc
Q psy15622 90 IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP 168 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~ 168 (217)
+++++++||+..++++.|+.++|.+|++.++...+.. .+.++..+++.++||+++||..+|++|...++++........
T Consensus 167 ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~ 246 (322)
T 3eie_A 167 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFK 246 (322)
T ss_dssp SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEE
T ss_pred CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999887654 677899999999999999999999999999999986542111
Q ss_pred ccc-------------------------cc-cccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy15622 169 QIQ-------------------------AI-PMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 169 ~~~-------------------------~~-~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~ 215 (217)
... .. .+.....+||.+||..|++.++|+++.+++..|++|.++||.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 247 DVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp ECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 000 00 011123679999999999999999999999999999999996
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.3e-35 Score=243.79 Aligned_cols=208 Identities=37% Similarity=0.618 Sum_probs=178.0
Q ss_pred hcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------
Q psy15622 7 RDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------- 78 (217)
Q Consensus 7 ~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------- 78 (217)
|..+.+.|+++|+||+|++++++.|.+.+.+|+.+|..|...+ .++++++|+||||||||++|+++|+.++.
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 5567788999999999999999999999999999999998876 67789999999999999999999974432
Q ss_pred -------------------------------------------------------------------------hhccccC
Q psy15622 79 -------------------------------------------------------------------------VHCGASN 85 (217)
Q Consensus 79 -------------------------------------------------------------------------~~~~~t~ 85 (217)
.++++||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 3558999
Q ss_pred CCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 86 FPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 86 ~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
.++.+++++++ ||+..++++.|+.++|.+|++.+++..++..++++..++..++||+|+||.++|++|+..|+++.+.
T Consensus 163 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999888878889999999999999999999999999999988764
Q ss_pred CCCCccc--------ccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy15622 164 GKSVPQI--------QAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214 (217)
Q Consensus 164 ~~~~~~~--------~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~ 214 (217)
....... ..........+|+.+||..|++.++|+++++++..|++|.++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 2211000 00000112357999999999999999999999999999999985
No 12
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4e-35 Score=258.20 Aligned_cols=215 Identities=37% Similarity=0.700 Sum_probs=179.7
Q ss_pred hhhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh-ch--
Q psy15622 2 KRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY-NQ-- 78 (217)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~-~~-- 78 (217)
.+.+.+.+..+.|+++|+||+|++++++.|.+.+.+|+.++.+|.....|++++||+||||||||++|+++|..+ +.
T Consensus 117 ~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~ 196 (444)
T 2zan_A 117 QNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF 196 (444)
T ss_dssp -------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred HHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence 355677788899999999999999999999999999999999988766778999999999999999999999866 22
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
++++
T Consensus 197 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 197 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp EEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred EEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 3558
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAA 161 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~ 161 (217)
+||.++.++++++|||+..++++.|+.++|..|++.++...+.. .+.++..|+..++||||+||..+|++|...|+++.
T Consensus 277 atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 277 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp EESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred cCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653 67789999999999999999999999999999998
Q ss_pred HhCCCCcc----------------cc---------------ccc-ccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15622 162 IRGKSVPQ----------------IQ---------------AIP-MAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEW 209 (217)
Q Consensus 162 ~~~~~~~~----------------~~---------------~~~-~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~ 209 (217)
+....-.. .. ... +.....+||.+||..|++.++|+++++++..|++|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~ 436 (444)
T 2zan_A 357 QSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKF 436 (444)
T ss_dssp HHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 65321000 00 000 01123589999999999999999999999999999
Q ss_pred HHHhCCC
Q psy15622 210 NEKFGSS 216 (217)
Q Consensus 210 ~~~~~~~ 216 (217)
.++||..
T Consensus 437 ~~~~~~~ 443 (444)
T 2zan_A 437 TEDFGQE 443 (444)
T ss_dssp TSSCTTT
T ss_pred HHHHcCC
Confidence 9999974
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.6e-35 Score=273.11 Aligned_cols=205 Identities=32% Similarity=0.507 Sum_probs=177.3
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..|+++|+||+|++++++.|++.+.+|+.+|++|..++ .||+|||||||||||||++|+++|+.++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999999999999999887 88999999999999999999999986554
Q ss_pred -----------------------------------------------------------------hhccccCCCCCCcHH
Q psy15622 79 -----------------------------------------------------------------VHCGASNFPWNIDDA 93 (217)
Q Consensus 79 -----------------------------------------------------------------~~~~~t~~~~~l~~~ 93 (217)
+++++||+++.||++
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHH
Confidence 466999999999999
Q ss_pred HHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccc
Q psy15622 94 FLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQ 171 (217)
Q Consensus 94 l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~ 171 (217)
++| ||++.|+++.|+.++|.+||+.++++..+..++++..+|..++||+|+||..+|++|++.|+++...........
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~ 436 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCC
T ss_pred HhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999 999999999999999999999999999888999999999999999999999999999999999876422111111
Q ss_pred cccccccCCCccHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHHhCCC
Q psy15622 172 AIPMAQLKRPVTKADFEMAIAKCR-----------KTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 172 ~~~~~~~~~~vt~~df~~al~~~~-----------p~~~~~~i~~~~~~~~~~~~~ 216 (217)
...+......++.+||..|++.++ |+++|+++.+++++++.....
T Consensus 437 ~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~ 492 (806)
T 3cf2_A 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL 492 (806)
T ss_dssp CSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTT
T ss_pred cchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHH
Confidence 111111245689999999999987 468999999999998877653
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=230.78 Aligned_cols=186 Identities=33% Similarity=0.541 Sum_probs=146.0
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..|+++|+||+|++++++.|.+.+.+|+.++..+...+ .+++|++|+|||||||||+++++|+.++.
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 56889999999999999999999999999999999877 67789999999999999999999986543
Q ss_pred -----------------------------------------------------------------hhccccCCCCCCcHH
Q psy15622 79 -----------------------------------------------------------------VHCGASNFPWNIDDA 93 (217)
Q Consensus 79 -----------------------------------------------------------------~~~~~t~~~~~l~~~ 93 (217)
+++++||.|+.+|++
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHh
Confidence 344899999999999
Q ss_pred HHh--hccccccccCCCHHHHHHHHHHHHhh---CCCCCcccHHHHHHHc--cCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 94 FLR--RLEKRIYVPLPSSSGRQELLRLILRQ---VDLASDLDLELVSDQL--EGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 94 l~~--rf~~~i~~~~p~~~~r~~il~~~l~~---~~~~~~~~~~~la~~~--~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
++| ||++.++++.|+.++|.+|++.+++. ..+..++++..++..+ +||||+||..+|++|++.|+++.+....
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~ 242 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK 242 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999 99999999999999999999999864 3455788999999864 5999999999999999999988643221
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCCCCCHHHH
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADI 203 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i 203 (217)
.. .......|+.+||..|+++++|+++.+++
T Consensus 243 ~~------~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 243 SG------NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred cc------ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 10 11124579999999999999999998875
No 15
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-32 Score=227.45 Aligned_cols=210 Identities=36% Similarity=0.608 Sum_probs=175.5
Q ss_pred ChhhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--
Q psy15622 1 MKRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-- 78 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-- 78 (217)
|.+++.+.+..++++.+|++++|.+++++.|.+.+..|+.++.++.....++.+++|+||||||||++|+++|+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 467888899999999999999999999999999999999999988877777899999999999999999999985542
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
.+
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 25
Q ss_pred ccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHH
Q psy15622 81 CGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMR 159 (217)
Q Consensus 81 ~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~ 159 (217)
+++||.++.+++++++||+..++++.|+.++|..+++.++...+.. .+.++..+++.+.||+++|+..+++.|...+++
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999876643 456788999999999999999999999988887
Q ss_pred HHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy15622 160 AAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~ 215 (217)
+........ ........||.+||..|++.++|+++.+++..|++|.+.||.
T Consensus 243 ~~~~~~~~~-----~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 243 ELNVEQVKC-----LDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp TCC-------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHhhhhccc-----ccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 642111100 011123579999999999999999999999999999999986
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.8e-32 Score=230.74 Aligned_cols=209 Identities=34% Similarity=0.641 Sum_probs=177.8
Q ss_pred hhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----
Q psy15622 3 RLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---- 78 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---- 78 (217)
+.+.+.+..+.++.+|++|+|++++++.|.+.+.+|+..+..+.....+++++||+||||||||++|+++|..++.
T Consensus 68 ~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 68 ELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp HHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 4567778888999999999999999999999999999999988877778899999999999999999999975432
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
.++++
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred EehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 35589
Q ss_pred cCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHH
Q psy15622 84 SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAI 162 (217)
Q Consensus 84 t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~ 162 (217)
||.++.+++++++||+..++++.|+.++|.++++.+++..+.. .+.++..+++.+.||+++|+..+|+.|...++++..
T Consensus 228 tn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 228 TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp ESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred cCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999876543 556788999999999999999999999988887532
Q ss_pred hCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 163 RGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
+..... .......+|+.+||..|++.++|+++.++++.|++|.+.||.+
T Consensus 308 ~~~~~~-----~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 308 TADIAT-----ITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp C---------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred hhhhcc-----ccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 111100 0111246799999999999999999999999999999999974
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=6.2e-30 Score=221.44 Aligned_cols=209 Identities=37% Similarity=0.593 Sum_probs=179.6
Q ss_pred hhhhhhcccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---
Q psy15622 2 KRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--- 78 (217)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--- 78 (217)
++++.+.++..+++++|++|+|.+.+++.|.+.+.+++.++.++.....++.++||+||||||||++|+++|..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 46778888999999999999999999999999999999999998888878899999999999999999999975443
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.+++
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 3568
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAA 161 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~ 161 (217)
+||.++.+++++++||+..++++.|+.++|.++++.++...+.. .+.++..++..+.||+++++..+++.|...++++.
T Consensus 258 atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp EESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred ecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999876553 45678899999999999999999999998888763
Q ss_pred HhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy15622 162 IRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~ 215 (217)
...... . ........|+.+||..+++.+.|+++.++++.|++|.++||.
T Consensus 338 ~~~~~~----~-~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 338 KPEQVK----N-MSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CCC-------C-CSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhhhhh----c-cchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 221110 0 011124569999999999999999999999999999999997
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.4e-28 Score=202.38 Aligned_cols=189 Identities=37% Similarity=0.589 Sum_probs=155.4
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
....|+.+|++|+|.+++++.|.+.+..++..+..+...+ .++.+++|+||||||||++|+++|+.++.
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 4577899999999999999999999999999999998877 67789999999999999999999975443
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.+++|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 3569999999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+++++++ ||+..+.++.|+.++|.++++.++....+..+.++..++..+.|++++|+..+++.|...|+.+.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999998888888899999999999999999999999999887764
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhCC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRK--TVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p--~~~~~~i~~~~~~~~~~~~ 215 (217)
...||.+||..|++.+.+ ......-..+..|+..||+
T Consensus 243 ------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 243 ------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp ------------CSSBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred ------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 456999999999998863 3444556778899999886
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=6.1e-29 Score=220.83 Aligned_cols=195 Identities=33% Similarity=0.515 Sum_probs=155.4
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
.+..+|++|+|.+.+++.|++.+..++.++..+...+ .++.++||+||||||||++|+++++.++.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 3568899999999999999999999999999999886 67789999999999999999999975432
Q ss_pred ----------------------------------------------------------------hhccccCCCCCCcHHH
Q psy15622 79 ----------------------------------------------------------------VHCGASNFPWNIDDAF 94 (217)
Q Consensus 79 ----------------------------------------------------------------~~~~~t~~~~~l~~~l 94 (217)
.++++||.++.+++++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al 357 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHH
Confidence 4558999999999999
Q ss_pred Hh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccc
Q psy15622 95 LR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQA 172 (217)
Q Consensus 95 ~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~ 172 (217)
++ ||+..++++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|++|...++++............
T Consensus 358 ~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~ 437 (489)
T 3hu3_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (489)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSC
T ss_pred hCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99 9999999999999999999999999988888889999999999999999999999999999887644222111000
Q ss_pred ccccccCCCccHHHHHHHHHhcC-----------CCCCHHHHHHHH
Q psy15622 173 IPMAQLKRPVTKADFEMAIAKCR-----------KTVTAADIRQFE 207 (217)
Q Consensus 173 ~~~~~~~~~vt~~df~~al~~~~-----------p~~~~~~i~~~~ 207 (217)
.........+|.+||..|++.++ |+++|+||+++.
T Consensus 438 ~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 438 DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp CHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred chhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 11112245799999999999876 689999999875
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=2e-30 Score=242.64 Aligned_cols=208 Identities=37% Similarity=0.612 Sum_probs=150.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.....+.++|++++|++++++.|.+.+.+|+.++..+...+ .++.+++|+||||||||++|+++|+.++.
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 45567899999999999999999999999999988887766 67789999999999999999999985543
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
++++|||.+
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc
Confidence 456999999
Q ss_pred CCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+.+|++++| ||+..++++.|+.++|.+|++.+++...+..++++..+++.+.|||++||.++|++|...|+++.+...
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 706 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999988888888899999999999999999999999999988764321
Q ss_pred CCcc--------cccccccccCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy15622 166 SVPQ--------IQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFGSS 216 (217)
Q Consensus 166 ~~~~--------~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~i~~~~~~~~~~~~~ 216 (217)
.... ...........+|+.+||..|++..+|+++.+++..|++|.++|+.+
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~ 765 (806)
T 1ypw_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC-----------------------
T ss_pred HhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1100 00001112245799999999999999999999999999999998753
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=2.2e-26 Score=188.12 Aligned_cols=169 Identities=38% Similarity=0.576 Sum_probs=144.8
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
..+.++.+|+|++|++.+++.+.+.+.+ +..+..+...+ .++.+++|+||||||||++|+++++.++.
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 3467889999999999999999998876 55565555544 56689999999999999999999985542
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.++++||.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 2558899999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+++++++ ||+..+.++.|+.++|.+|++.++++.++.++.++..++..++||+++|+.+++++|...|..+.
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~----- 236 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN----- 236 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999999888888889999999999999999999999998887653
Q ss_pred CcccccccccccCCCccHHHHHHHHHhcCC
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p 196 (217)
...|+.+||..|++.+..
T Consensus 237 ------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 ------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ------------CSSBCHHHHHHHHHHHTT
T ss_pred ------------CCcccHHHHHHHHHHHhc
Confidence 456999999999998753
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=1.6e-25 Score=197.77 Aligned_cols=166 Identities=37% Similarity=0.580 Sum_probs=146.1
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------- 78 (217)
.++++|+||+|.+++++.+++.+.+ +..+..+...+ .++++++|+||||||||++|+++|+.++.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5789999999999999999999876 55666666655 67789999999999999999999974432
Q ss_pred -------------------------------------------------------------------hhccccCCCCCCc
Q psy15622 79 -------------------------------------------------------------------VHCGASNFPWNID 91 (217)
Q Consensus 79 -------------------------------------------------------------------~~~~~t~~~~~l~ 91 (217)
.++++||.++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 3558999999999
Q ss_pred HHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcc
Q psy15622 92 DAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQ 169 (217)
Q Consensus 92 ~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~ 169 (217)
++++| ||+..+.++.|+..+|.+|++.++++.++..++++..+++.++||+|+||.++|++|+..|.++.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-------- 240 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG-------- 240 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--------
Confidence 99998 99999999999999999999999999888888899999999999999999999999998887543
Q ss_pred cccccccccCCCccHHHHHHHHHhcCC
Q psy15622 170 IQAIPMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 170 ~~~~~~~~~~~~vt~~df~~al~~~~p 196 (217)
...|+.+||..|++++.+
T Consensus 241 ---------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 ---------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ---------CSSBCHHHHHHHHHHHC-
T ss_pred ---------CCeecHHHHHHHHHHHhc
Confidence 356999999999998864
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=2.2e-25 Score=181.92 Aligned_cols=165 Identities=39% Similarity=0.604 Sum_probs=140.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
+....|+.+|++++|.++++..+...... ...+..+...+ ..+++++|+|||||||||+++++++.++.
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 45678899999999999999999988775 44555666555 56688999999999999999999974322
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
+++++||.|
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p 164 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 164 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence 233889999
Q ss_pred CCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+.+|++++| ||+..+.++.|+.++|.+|++.+.+...+..+.++..+++.++||+++|+..++.+|...|.++.
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~---- 240 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG---- 240 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999999 99999999999999999999999988887788899999999999999999999999998886543
Q ss_pred CCcccccccccccCCCccHHHHHHHH
Q psy15622 166 SVPQIQAIPMAQLKRPVTKADFEMAI 191 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~vt~~df~~al 191 (217)
...||.+||.+|+
T Consensus 241 -------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 -------------RRKITMKDLEEAA 253 (254)
T ss_dssp -------------CSSBCHHHHHHHT
T ss_pred -------------CCCcCHHHHHHHh
Confidence 3469999999886
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=183.01 Aligned_cols=165 Identities=32% Similarity=0.517 Sum_probs=131.9
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
|+++|++++|++++++.+.+.+.+ +..+..+...+ .++.+++|+||||||||++|+++|+.++.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 578999999999999999998876 55555555444 56789999999999999999999974432
Q ss_pred -------------------------------------------------------------------hhccccCCCCCCc
Q psy15622 79 -------------------------------------------------------------------VHCGASNFPWNID 91 (217)
Q Consensus 79 -------------------------------------------------------------------~~~~~t~~~~~l~ 91 (217)
.++++||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 3458899999999
Q ss_pred HHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCccc--HHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCC
Q psy15622 92 DAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLD--LELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSV 167 (217)
Q Consensus 92 ~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~ 167 (217)
+++++ ||+..++++.|+.++|.++++.+++..++..+.+ ...++..+.||+++|+..+++.|...|.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------ 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999 9999999999999999999999999887764433 4789999999999999999999998887654
Q ss_pred cccccccccccCCCccHHHHHHHHHhcCC
Q psy15622 168 PQIQAIPMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 168 ~~~~~~~~~~~~~~vt~~df~~al~~~~p 196 (217)
...|+.+||..|++++.+
T Consensus 234 -----------~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 234 -----------HTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp --------------CCBCCHHHHHHHHHH
T ss_pred -----------CCCCCHHHHHHHHHHhcc
Confidence 346889999999998764
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=3.4e-24 Score=177.30 Aligned_cols=164 Identities=39% Similarity=0.602 Sum_probs=139.6
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+...|+.+|++++|.+++++.+...... ...+..+.... ..+++++|+|||||||||+++++++.++.
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 4556889999999999999999988775 34455555554 55678999999999999999999974321
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
+++++||.|+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 2348899999
Q ss_pred CCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCC
Q psy15622 89 NIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKS 166 (217)
Q Consensus 89 ~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~ 166 (217)
.+|+++++ ||+..++++.|+.++|.+|++.+++...+..+.++..++..++|++++||..++.+|...|..+.
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~----- 264 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG----- 264 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988887788889999999999999999999999988876542
Q ss_pred CcccccccccccCCCccHHHHHHHH
Q psy15622 167 VPQIQAIPMAQLKRPVTKADFEMAI 191 (217)
Q Consensus 167 ~~~~~~~~~~~~~~~vt~~df~~al 191 (217)
...||.+||.+|+
T Consensus 265 ------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ------------RRKITMKDLEEAA 277 (278)
T ss_dssp ------------CCSBCHHHHHHHT
T ss_pred ------------CCCcCHHHHHHHh
Confidence 3469999999886
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=4.6e-26 Score=187.11 Aligned_cols=173 Identities=34% Similarity=0.538 Sum_probs=147.5
Q ss_pred ccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
.+.++.+|++++|.+++++.+.+.+.+ +..+..+...+ .++.+++|+||||||||++|+++|+.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 467889999999999999999998876 66777777655 56788999999999999999999974432
Q ss_pred -----------------------------------------------------------------------hhccccCCC
Q psy15622 79 -----------------------------------------------------------------------VHCGASNFP 87 (217)
Q Consensus 79 -----------------------------------------------------------------------~~~~~t~~~ 87 (217)
.++++||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 255899999
Q ss_pred CCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCC
Q psy15622 88 WNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGK 165 (217)
Q Consensus 88 ~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~ 165 (217)
+.+++++++ ||+..++++.|+.++|.++++.+++...+..+.++..+++.+.||+|+|+.++++.|...|..+.
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~---- 237 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN---- 237 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC----
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999999 99999999999999999999999998887777888899999999999999999999987764321
Q ss_pred CCcccccccccccCCCccHHHHHHHHHhcCCCCCHH
Q psy15622 166 SVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAA 201 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~ 201 (217)
...|+.+||..|++...|....+
T Consensus 238 -------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 238 -------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred -------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 34699999999999998866543
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=6.4e-25 Score=195.01 Aligned_cols=168 Identities=38% Similarity=0.578 Sum_probs=145.4
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
+.++++|+|++|.++++..+.+.+.+ +..+..+...+ ..+++++|+||||||||++++++|+.++.
T Consensus 24 ~~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102 (499)
T ss_dssp SCCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred cCCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence 34889999999999999999998876 55566666655 66789999999999999999999985432
Q ss_pred --------------------------------------------------------------------hhccccCCCCCC
Q psy15622 79 --------------------------------------------------------------------VHCGASNFPWNI 90 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~~~l 90 (217)
+++++||.|+.+
T Consensus 103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~L 182 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 182 (499)
T ss_dssp SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhc
Confidence 344889999999
Q ss_pred cHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCc
Q psy15622 91 DDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVP 168 (217)
Q Consensus 91 ~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~ 168 (217)
|++++| ||++.+.++.|+..+|.+|++.+++...+.+++++..+++.++||+|+||.+++++|+..|.++.
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~------- 255 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------- 255 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC-------
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 999998 99999999999999999999999988888888899999999999999999999999988775432
Q ss_pred ccccccccccCCCccHHHHHHHHHhcCCC
Q psy15622 169 QIQAIPMAQLKRPVTKADFEMAIAKCRKT 197 (217)
Q Consensus 169 ~~~~~~~~~~~~~vt~~df~~al~~~~p~ 197 (217)
...|+.+||..|++++.+.
T Consensus 256 ----------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 256 ----------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp ----------CSSCCSHHHHHHHHHHTTC
T ss_pred ----------CCccCHHHHHHHHHHHhcc
Confidence 3469999999999988653
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=1.3e-23 Score=196.55 Aligned_cols=200 Identities=32% Similarity=0.517 Sum_probs=163.5
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
..++++|+||+|++.+++.|.+.+.+|+.++.++..+. .++.+++|+|||||||||+|+++|+.++.
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999877 77789999999999999999999985443
Q ss_pred -----------------------------------------------------------------hhccccCCCCCCcHH
Q psy15622 79 -----------------------------------------------------------------VHCGASNFPWNIDDA 93 (217)
Q Consensus 79 -----------------------------------------------------------------~~~~~t~~~~~l~~~ 93 (217)
.++++||.++.++++
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHH
Confidence 344899999999999
Q ss_pred HHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccc
Q psy15622 94 FLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQ 171 (217)
Q Consensus 94 l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~ 171 (217)
+.+ ||+..+.++.|+.++|.++++.++.++.+..+.++..++..++||+++++..++.+|...++++...........
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~ 436 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhc
Confidence 998 999999999999999999999999998888888999999999999999999999999988887654322111100
Q ss_pred cccccccCCCccHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHH
Q psy15622 172 AIPMAQLKRPVTKADFEMAIAKCRK-----------TVTAADIRQFEEWNE 211 (217)
Q Consensus 172 ~~~~~~~~~~vt~~df~~al~~~~p-----------~~~~~~i~~~~~~~~ 211 (217)
..........++.+||..++....| .++|+++.++++.++
T Consensus 437 ~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp CCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred cchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 0111123466889999999988764 466766654444443
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.69 E-value=1.2e-16 Score=136.23 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=75.9
Q ss_pred CCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 86 FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 86 ~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
.+..+++++++||.. +.|+.|+.+++.++++..+...+.. ++..+..+++.+.+.+++++.+++..|...|..+.
T Consensus 239 ~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~--- 314 (368)
T 3uk6_A 239 SPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK--- 314 (368)
T ss_dssp EETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT---
T ss_pred CcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---
Confidence 477899999999977 7999999999999999988775543 44457788888886689999999999988776543
Q ss_pred CCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 165 KSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 165 ~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...||.+|+.++++.+.
T Consensus 315 --------------~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 315 --------------GTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp --------------CSSBCHHHHHHHHHHSB
T ss_pred --------------CCCCCHHHHHHHHHHhc
Confidence 45799999999999854
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.69 E-value=6.4e-16 Score=130.52 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=121.6
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+.+++.+...+..... ...++.+++|+||||||||++|+++++.++.
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 34567778999999999999999988864321 1234578999999999999999999975443
Q ss_pred ----------------------------------------------------------------hhccccCCCCCCcHHH
Q psy15622 79 ----------------------------------------------------------------VHCGASNFPWNIDDAF 94 (217)
Q Consensus 79 ----------------------------------------------------------------~~~~~t~~~~~l~~~l 94 (217)
.++++||....+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L 171 (338)
T 3pfi_A 92 EKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPL 171 (338)
T ss_dssp CSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHH
T ss_pred cchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHH
Confidence 1457888888899999
Q ss_pred HhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccc
Q psy15622 95 LRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAI 173 (217)
Q Consensus 95 ~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 173 (217)
++||+..+.++.|+.+++..+++..+...+.. ++..+..+++.+.| +.+++.+++..+...+....
T Consensus 172 ~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~------------ 238 (338)
T 3pfi_A 172 RDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVND------------ 238 (338)
T ss_dssp HTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTT------------
T ss_pred HhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhc------------
Confidence 99999999999999999999999999877653 33446667775554 56777777777665543221
Q ss_pred cccccCCCccHHHHHHHHHhcCC
Q psy15622 174 PMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 174 ~~~~~~~~vt~~df~~al~~~~p 196 (217)
...++.+++..++.....
T Consensus 239 -----~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 239 -----EEIITEKRANEALNSLGV 256 (338)
T ss_dssp -----CSEECHHHHHHHHHHHTC
T ss_pred -----CCccCHHHHHHHHHHhCC
Confidence 234778888888776543
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.64 E-value=3.8e-15 Score=124.73 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=127.8
Q ss_pred ccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
.++.+.+|++++|.+.+++.+...+.... ....++..++|+||+|||||++|+++++.++.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAK-------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHH-------ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 35667799999999999999988875321 11234578999999999999999999874432
Q ss_pred ---------------------------------------------------------------hhccccCCCCCCcHHHH
Q psy15622 79 ---------------------------------------------------------------VHCGASNFPWNIDDAFL 95 (217)
Q Consensus 79 ---------------------------------------------------------------~~~~~t~~~~~l~~~l~ 95 (217)
.++++||.+..+++++.
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~ 156 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLL 156 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTT
T ss_pred hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHH
Confidence 14577888888999999
Q ss_pred hhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccccc
Q psy15622 96 RRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIP 174 (217)
Q Consensus 96 ~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 174 (217)
+||...+.++.|+.+++..+++.++...+.. ++..+..++..+.| +++++.+++..+...+...
T Consensus 157 ~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~-------------- 221 (324)
T 1hqc_A 157 SRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVA-------------- 221 (324)
T ss_dssp TTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTT--------------
T ss_pred hcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh--------------
Confidence 9998899999999999999999998876543 33456778888766 4677777776554333111
Q ss_pred ccccCCCccHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHhC
Q psy15622 175 MAQLKRPVTKADFEMAIAKCRK---TVTAADIRQFEEWNEKFG 214 (217)
Q Consensus 175 ~~~~~~~vt~~df~~al~~~~p---~~~~~~i~~~~~~~~~~~ 214 (217)
....++.+++..++..... .....+...+....+.++
T Consensus 222 ---~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~ 261 (324)
T 1hqc_A 222 ---GEEVITRERALEALAALGLDELGLEKRDREILEVLILRFG 261 (324)
T ss_dssp ---SCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSC
T ss_pred ---cCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhc
Confidence 1235778888877776542 234444455555555553
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.63 E-value=7.7e-16 Score=128.23 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=52.4
Q ss_pred hccccCCCCCCcHHHHh--hccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHH
Q psy15622 80 HCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVV 148 (217)
Q Consensus 80 ~~~~t~~~~~l~~~l~~--rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~ 148 (217)
+++|||.++.+|++++| ||+..+++ |+.++|.+|++.++... .++.+.+++.++||+++++..
T Consensus 158 vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 158 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp EEEECSSCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred EEEecCCcccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 46899999999999998 99888874 69999999999888753 456889999999999999964
No 33
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=5.4e-14 Score=119.06 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=129.9
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 8 DIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 8 ~~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
.++......++++++|.+.+++.+...+.... ..+.++..++|+|||||||||+++++|+.++.
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 34556677799999999998888877664211 11234578999999999999999999987622
Q ss_pred -----------------------------------h------------------------------hccccCCCCCCcHH
Q psy15622 79 -----------------------------------V------------------------------HCGASNFPWNIDDA 93 (217)
Q Consensus 79 -----------------------------------~------------------------------~~~~t~~~~~l~~~ 93 (217)
. ++++|+.+..+++.
T Consensus 87 ~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 87 LVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp CCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred hcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 0 01245566678899
Q ss_pred HHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccc
Q psy15622 94 FLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQA 172 (217)
Q Consensus 94 l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~ 172 (217)
+++||...+.++.++.++..++++...+..+.. ++.....+++.+.| +++.+.++++.+...|..+.
T Consensus 167 l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~----------- 234 (334)
T 1in4_A 167 LRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVK----------- 234 (334)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcC-----------
Confidence 999998889999999999999999988766554 33446778888776 56788888877766554432
Q ss_pred ccccccCCCccHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHhC
Q psy15622 173 IPMAQLKRPVTKADFEMAIAKCRK---TVTAADIRQFEEWNEKFG 214 (217)
Q Consensus 173 ~~~~~~~~~vt~~df~~al~~~~p---~~~~~~i~~~~~~~~~~~ 214 (217)
...||.+++.++++.+.. .....+..-+..+.+.|+
T Consensus 235 ------~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (334)
T 1in4_A 235 ------ADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR 273 (334)
T ss_dssp ------CSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHST
T ss_pred ------CCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhC
Confidence 345889999999887653 233455455556666664
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.60 E-value=3.6e-15 Score=124.20 Aligned_cols=143 Identities=19% Similarity=0.146 Sum_probs=106.1
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhc----CCCceEEEecCCCCcHHHHHHHHHHHhch-----------------
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIR----KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------------- 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~Gp~G~GKTtla~aia~~~~~----------------- 78 (217)
+++|++++++.+.+.+..+.. +..+...+ .++.+++|+||||||||++|+++|+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999999987553 33333222 44567999999999999999999986621
Q ss_pred ------------------------------------------------------------hhccccCCCC-----CCcHH
Q psy15622 79 ------------------------------------------------------------VHCGASNFPW-----NIDDA 93 (217)
Q Consensus 79 ------------------------------------------------------------~~~~~t~~~~-----~l~~~ 93 (217)
.+++++|... .++++
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPG 190 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTT
T ss_pred hhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHH
Confidence 1224444332 24688
Q ss_pred HHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc-------cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 94 FLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQL-------EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 94 l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~-------~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
+++||+..+.|+.|+.+++.++++.++...+.. ++..+..++... ..-+++++.+++..|...+..+.+.
T Consensus 191 l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 191 FRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999877653 333455555552 2234789999999999888877654
No 35
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.58 E-value=7.9e-14 Score=111.22 Aligned_cols=148 Identities=12% Similarity=0.063 Sum_probs=108.3
Q ss_pred CCCCCCcccch---HHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch------------
Q psy15622 14 PDVQWSDIANQ---VKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------ 78 (217)
Q Consensus 14 ~~~~~~dl~g~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------ 78 (217)
|..+|++++|. ..+.+.+...+.. ..+..++|+||+|||||++++++++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34789999973 4566666655532 13478999999999999999999975431
Q ss_pred ------------------------------------------------h-hccccCC-CC---CCcHHHHhhcc--cccc
Q psy15622 79 ------------------------------------------------V-HCGASNF-PW---NIDDAFLRRLE--KRIY 103 (217)
Q Consensus 79 ------------------------------------------------~-~~~~t~~-~~---~l~~~l~~rf~--~~i~ 103 (217)
. ++.+++. +. .+++.+.+||. ..+.
T Consensus 91 ~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~ 170 (242)
T 3bos_A 91 HASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQ 170 (242)
T ss_dssp GGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEE
Confidence 2 4445543 32 45688999986 8899
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCc
Q psy15622 104 VPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPV 182 (217)
Q Consensus 104 ~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 182 (217)
++.|+.+++.+++...++..+.. ++..++.+++.+.| +.+++.+++..+...+... ...|
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~------------------~~~I 231 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH------------------QRKL 231 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH------------------TCCC
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh------------------CCCC
Confidence 99999999999999999876653 33446677777765 6788888888777665433 2459
Q ss_pred cHHHHHHHHH
Q psy15622 183 TKADFEMAIA 192 (217)
Q Consensus 183 t~~df~~al~ 192 (217)
|.+++.++++
T Consensus 232 t~~~v~~~l~ 241 (242)
T 3bos_A 232 TIPFVKEMLR 241 (242)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 9999998875
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.58 E-value=1.7e-14 Score=113.26 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=110.0
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
..++++..|++++|.++.++.+.+.+... ....++|+||+|||||+++++++..+..
T Consensus 8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 44678889999999999999999888531 1235999999999999999999975411
Q ss_pred ----------------------------------------------------------hhccccCCCCCCcHHHHhhccc
Q psy15622 79 ----------------------------------------------------------VHCGASNFPWNIDDAFLRRLEK 100 (217)
Q Consensus 79 ----------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~~ 100 (217)
.++.++|.+..+++.+.+||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~- 154 (226)
T 2chg_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA- 154 (226)
T ss_dssp TTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-
T ss_pred cccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc-
Confidence 344788888899999999997
Q ss_pred cccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccC
Q psy15622 101 RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLK 179 (217)
Q Consensus 101 ~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 179 (217)
.+.++.|+.++..++++..+...+.. ++..+..+++.+.| +.+.+.+++..++..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~---------------------- 211 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG---------------------- 211 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC----------------------
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC----------------------
Confidence 88999999999999999988765543 33345667766654 4555554444443211
Q ss_pred CCccHHHHHHHHH
Q psy15622 180 RPVTKADFEMAIA 192 (217)
Q Consensus 180 ~~vt~~df~~al~ 192 (217)
..||.+|+.+++.
T Consensus 212 ~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 EVVDADTIYQITA 224 (226)
T ss_dssp SCBCHHHHHHHHH
T ss_pred ceecHHHHHHHhc
Confidence 2589999999876
No 37
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=4.4e-14 Score=112.10 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=115.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+..+++++|.+..++.|...+.. +..+..++|+||+|+|||++++++++.+..
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 81 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 81 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 34567788899999999999999888753 123457999999999999999999875420
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 161 (250)
T 1njg_A 82 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 161 (250)
T ss_dssp CSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEE
T ss_pred ccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEE
Confidence 2347
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAA 161 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~ 161 (217)
+|+.+..+++.+.+|+ ..+.++.++.++..++++..+...+.. ++..+..+++.+.| +++.+.+++..|...+
T Consensus 162 ~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~~---- 235 (250)
T 1njg_A 162 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG---- 235 (250)
T ss_dssp EESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTTT----
T ss_pred EeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc----
Confidence 7888888899998886 678899999999999999998766543 33456778888877 7888888877663211
Q ss_pred HhCCCCcccccccccccCCCccHHHHHHHH
Q psy15622 162 IRGKSVPQIQAIPMAQLKRPVTKADFEMAI 191 (217)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~vt~~df~~al 191 (217)
...+|.+|+.+++
T Consensus 236 -----------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 236 -----------------DGQVSTQAVSAML 248 (250)
T ss_dssp -----------------TSSBCHHHHHHHS
T ss_pred -----------------CceecHHHHHHHh
Confidence 2259999998875
No 38
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.56 E-value=8.2e-15 Score=100.64 Aligned_cols=86 Identities=21% Similarity=0.421 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHH
Q psy15622 108 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADF 187 (217)
Q Consensus 108 ~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df 187 (217)
+.++|.+||+.++++.++.++++++.||+.|+||||+||.++|++|++.|+++. ...|+.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------------~~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------------RKVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------------cccCCHHHH
Confidence 457899999999999999889999999999999999999999999999999885 456999999
Q ss_pred HHHHHhcCCCCCH-HHHHHHHHHH
Q psy15622 188 EMAIAKCRKTVTA-ADIRQFEEWN 210 (217)
Q Consensus 188 ~~al~~~~p~~~~-~~i~~~~~~~ 210 (217)
..|++++.++... .....|.+|.
T Consensus 65 ~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 65 LKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHTC---------------
T ss_pred HHHHHHHhcCcccccchhHHhccC
Confidence 9999999988754 4477777884
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.55 E-value=1.8e-14 Score=129.48 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=113.0
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------------
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------- 78 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------- 78 (217)
.+|++|++++++.+.+.+........ .++..++|+|||||||||++++||+.++.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 35689999999999877654222111 25678999999999999999999975532
Q ss_pred ------------------------------------------------------------------------hhccccCC
Q psy15622 79 ------------------------------------------------------------------------VHCGASNF 86 (217)
Q Consensus 79 ------------------------------------------------------------------------~~~~~t~~ 86 (217)
.+++|||.
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 25589999
Q ss_pred CCCCcHHHHhhccccccccCCCHHHHHHHHHHHH-----hhCCCC------CcccHHHHHHHcc-CCCHHhHHHHHHHHH
Q psy15622 87 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL-----RQVDLA------SDLDLELVSDQLE-GYSASDIVVVCRDAA 154 (217)
Q Consensus 87 ~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l-----~~~~~~------~~~~~~~la~~~~-g~s~~di~~l~~~a~ 154 (217)
++.+++++++||+ .+.|+.|+.+++.+|++.++ +..++. ++..+..++.... ....+++++.+..++
T Consensus 234 ~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 234 LATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp TTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred cccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence 9999999999995 78999999999999998876 333432 1223444444333 244567776666666
Q ss_pred HHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 155 FMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
..+..+.+... .....||.+|+..++..-.
T Consensus 313 ~~aa~~~~~~~-----------~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 313 RKAAKAIVAEE-----------RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHTTC-----------CSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHhcC-----------CcceecCHHHHHHHhCCcc
Confidence 66655554322 1245688899999887654
No 40
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.54 E-value=5.5e-15 Score=100.39 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHH
Q psy15622 108 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADF 187 (217)
Q Consensus 108 ~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df 187 (217)
+.++|.+||+.++++.++.+++++..||+.++||||+||.++|++|++.|+++. ..+||.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 678999999999999998889999999999999999999999999999987754 467999999
Q ss_pred HHHHHhcCCCCCHHHHHHH
Q psy15622 188 EMAIAKCRKTVTAADIRQF 206 (217)
Q Consensus 188 ~~al~~~~p~~~~~~i~~~ 206 (217)
..|+++++|+++ ++++.|
T Consensus 65 ~~Al~~~~ps~~-~~l~~y 82 (83)
T 3aji_B 65 EKAYKTVIKKDE-QEHEFY 82 (83)
T ss_dssp HHHHHHHCC----------
T ss_pred HHHHHHHccCch-HHHHhc
Confidence 999999999999 777665
No 41
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.54 E-value=1.1e-16 Score=140.97 Aligned_cols=124 Identities=25% Similarity=0.306 Sum_probs=82.9
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc---------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN--------------- 77 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~--------------- 77 (217)
.|...|++++|++++++.+...+... .....+++++||+||||||||++|+++|+.++
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 35667899999999999998877542 22334678999999999999999999999776
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 78 -------------------------------------------------------------------------------- 77 (217)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (217)
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence
Q ss_pred -------hhhccccCCCCCCcHHHHh--hccc--cccccCCCH--HHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHH
Q psy15622 78 -------QVHCGASNFPWNIDDAFLR--RLEK--RIYVPLPSS--SGRQELLRLILRQVDLASDLDLELVSDQLEGYSAS 144 (217)
Q Consensus 78 -------~~~~~~t~~~~~l~~~l~~--rf~~--~i~~~~p~~--~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~ 144 (217)
.+++++||.++.+++++.| ||+. .+++|.|+. ..|.++++.+.. .+++.++..++| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 0123888999999999987 9988 567777753 556666554332 267888888888 99
Q ss_pred hHHHHHHH
Q psy15622 145 DIVVVCRD 152 (217)
Q Consensus 145 di~~l~~~ 152 (217)
|+.++|..
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99888843
No 42
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=95.38 Aligned_cols=75 Identities=31% Similarity=0.602 Sum_probs=69.4
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccH
Q psy15622 105 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTK 184 (217)
Q Consensus 105 ~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~ 184 (217)
|+|+.++|.+||+.++++..+..++++..|++.++||||+||.++|++|++.|+++. ...|+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 689999999999999999988889999999999999999999999999999999874 457999
Q ss_pred HHHHHHHHhcCC
Q psy15622 185 ADFEMAIAKCRK 196 (217)
Q Consensus 185 ~df~~al~~~~p 196 (217)
+||..|++++..
T Consensus 64 ~d~~~Al~~v~~ 75 (78)
T 3kw6_A 64 EDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.52 E-value=2.1e-13 Score=114.82 Aligned_cols=152 Identities=16% Similarity=0.081 Sum_probs=106.2
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------- 78 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------- 78 (217)
..+..+++++|.+++++.+...+.. +.+++|+||||||||++|+++|+.++.
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 3344567899999999888776642 368999999999999999999984432
Q ss_pred -----------------------------------------------------------------hhccccCCCC-----
Q psy15622 79 -----------------------------------------------------------------VHCGASNFPW----- 88 (217)
Q Consensus 79 -----------------------------------------------------------------~~~~~t~~~~----- 88 (217)
.+++|+|...
T Consensus 87 ~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~ 166 (331)
T 2r44_A 87 DLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTY 166 (331)
T ss_dssp HHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCC
T ss_pred hcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcc
Confidence 1224555332
Q ss_pred CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-----------------------CcccHHHHHHHc-------
Q psy15622 89 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-----------------------SDLDLELVSDQL------- 138 (217)
Q Consensus 89 ~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-----------------------~~~~~~~la~~~------- 138 (217)
.+++++++||...+.++.|+.+++.+|++......... ++..++.+++..
T Consensus 167 ~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~ 246 (331)
T 2r44_A 167 PLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPA 246 (331)
T ss_dssp CCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGG
T ss_pred cCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccc
Confidence 38999999998889999999999999999887642110 111133333221
Q ss_pred ------------cCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 139 ------------EGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 139 ------------~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
.|.|++....+++.|...|..+. ...++.+|+..++..+.
T Consensus 247 ~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g-----------------~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 247 EYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN-----------------RDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp GGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHH
T ss_pred cccccccccccccCcChhHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHh
Confidence 15577777777776665554322 34589999999988764
No 44
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=98.29 Aligned_cols=78 Identities=28% Similarity=0.533 Sum_probs=71.6
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCc
Q psy15622 103 YVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPV 182 (217)
Q Consensus 103 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 182 (217)
...+|+.++|.+||+.++++..+.++++++.||+.++||||+||.++|++|++.|+++. ...|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I 69 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHV 69 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCC
Confidence 34679999999999999999988889999999999999999999999999999999875 4579
Q ss_pred cHHHHHHHHHhcCCC
Q psy15622 183 TKADFEMAIAKCRKT 197 (217)
Q Consensus 183 t~~df~~al~~~~p~ 197 (217)
+.+||..|+++++|.
T Consensus 70 ~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 70 TQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHccC
Confidence 999999999998874
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.51 E-value=9.8e-14 Score=115.12 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=113.3
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhh--cCCCceEEEecCCCCcHHHHHHHHHHHhch------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHI--RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------ 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------ 78 (217)
++++|++++++.+...+..+.....+.... ..++.+++|+||||||||++|+++++.++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 459999999999998886543332222111 235678999999999999999999874421
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 01233
Q ss_pred ----cCCCCCCcHHHHhhccccccccCCCHHHHHHHHHH----HH-------hhCCCC---CcccHHHHHHHcc------
Q psy15622 84 ----SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL----IL-------RQVDLA---SDLDLELVSDQLE------ 139 (217)
Q Consensus 84 ----t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~----~l-------~~~~~~---~~~~~~~la~~~~------ 139 (217)
++.+..+++++++||+..+.|+.|+.+++.++++. ++ ...+.. ++..++.+++.+.
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 254 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 254 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence 45677889999999998899999999999999983 22 122221 3334566666652
Q ss_pred -CCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 140 -GYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 140 -g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
+.+.+++.+++..+...+..+.... ......||.+|+..++....
T Consensus 255 ~~g~~R~l~~~l~~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 255 ENIGARRLHTVMERLMDKISFSASDM-----------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCCTTHHHHHHHHHHSHHHHHHGGGC-----------TTCEEEECHHHHHHHTCSSS
T ss_pred cccCcHHHHHHHHHHHHhhhcCCccc-----------cCCEEEEeeHHHHHHHHhhh
Confidence 4678889888888766554332110 01123499999999998764
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.50 E-value=7.6e-14 Score=122.62 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=111.0
Q ss_pred ccCCCCCCCcccchHHHH---HHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------
Q psy15622 11 VERPDVQWSDIANQVKAK---KLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------- 78 (217)
....+.+|++++|++.++ ..|...+.. ++ ..+++|+||||||||++|++|++.++.
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 345678999999999998 677777642 11 257999999999999999999986543
Q ss_pred --------------------------------------------------hhcc-cc-CCCCCCcHHHHhhccccccccC
Q psy15622 79 --------------------------------------------------VHCG-AS-NFPWNIDDAFLRRLEKRIYVPL 106 (217)
Q Consensus 79 --------------------------------------------------~~~~-~t-~~~~~l~~~l~~rf~~~i~~~~ 106 (217)
.+++ || |....+++++++|+. ++.++.
T Consensus 86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~ 164 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRAR-VYLLKS 164 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEE-EEECCC
T ss_pred CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCcee-EEeeCC
Confidence 2223 44 344589999999997 677999
Q ss_pred CCHHHHHHHHHHHHhhCC-------C-CCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccccccccccc
Q psy15622 107 PSSSGRQELLRLILRQVD-------L-ASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQL 178 (217)
Q Consensus 107 p~~~~r~~il~~~l~~~~-------~-~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (217)
|+.++...+++..+.... + -++..++.+++.+.| +.+++.+++..+...+... ...
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~---------------~~~ 228 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVD---------------DSG 228 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBC---------------TTS
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccc---------------cCC
Confidence 999999999999987621 1 123346667777554 4666666666554433100 001
Q ss_pred CCCccHHHHHHHHHhcCCCC
Q psy15622 179 KRPVTKADFEMAIAKCRKTV 198 (217)
Q Consensus 179 ~~~vt~~df~~al~~~~p~~ 198 (217)
...||.+++.+++....+..
T Consensus 229 ~~~It~e~v~~~l~~~~~~~ 248 (447)
T 3pvs_A 229 KRVLKPELLTEIAGERSARF 248 (447)
T ss_dssp CEECCHHHHHHHHTCCCCC-
T ss_pred CCccCHHHHHHHHhhhhhcc
Confidence 24599999999998765433
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.47 E-value=1.1e-12 Score=114.99 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=108.7
Q ss_pred CCCCCCCccc-chH--HHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh-----ch------
Q psy15622 13 RPDVQWSDIA-NQV--KAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY-----NQ------ 78 (217)
Q Consensus 13 ~~~~~~~dl~-g~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~-----~~------ 78 (217)
.|..+|++++ |.. .....+......+ .. +..++|+||||||||++++++++.+ +.
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3456889987 533 3344444333321 11 4689999999999999999999855 11
Q ss_pred -------------------------------------------------------------hhccccCC-CCC---CcHH
Q psy15622 79 -------------------------------------------------------------VHCGASNF-PWN---IDDA 93 (217)
Q Consensus 79 -------------------------------------------------------------~~~~~t~~-~~~---l~~~ 93 (217)
.++.+|+. +.. +++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 12234443 443 7899
Q ss_pred HHhhcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCccc
Q psy15622 94 FLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQI 170 (217)
Q Consensus 94 l~~rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~ 170 (217)
+++||. ..+.++.|+.+++.++++..+...++. ++..+..++..+.| +.+++..++..+...+...
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~---------- 316 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT---------- 316 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS----------
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----------
Confidence 999996 789999999999999999988755443 33347788888875 7888888888776655321
Q ss_pred ccccccccCCCccHHHHHHHHHhcCC
Q psy15622 171 QAIPMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 171 ~~~~~~~~~~~vt~~df~~al~~~~p 196 (217)
..+||.+++.++++...+
T Consensus 317 --------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 317 --------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp --------SSCCCHHHHHHHTSTTTC
T ss_pred --------CCCCCHHHHHHHHHHHhh
Confidence 235899999999988764
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.47 E-value=4.5e-13 Score=113.12 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred ccccCCCC-CCcHHHHhhccccccccCC-CHHHHHHHHHHHHh-------------------------------hCCCCC
Q psy15622 81 CGASNFPW-NIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILR-------------------------------QVDLAS 127 (217)
Q Consensus 81 ~~~t~~~~-~l~~~l~~rf~~~i~~~~p-~~~~r~~il~~~l~-------------------------------~~~~~~ 127 (217)
++++|... .+++++++||+..+.++.| +.+.+.+|++..+. ...+ +
T Consensus 191 i~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s 269 (350)
T 1g8p_A 191 VGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-P 269 (350)
T ss_dssp EEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-C
T ss_pred EEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-C
Confidence 36777644 8999999999988999998 67777788865321 1122 2
Q ss_pred cccHHHHHHHccC--C-CHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 128 DLDLELVSDQLEG--Y-SASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 128 ~~~~~~la~~~~g--~-s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
+..+..+++...+ . +.+.+.++++.|...|..+. ...|+.+|+..|+..+.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~-----------------~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 270 NTALYDCAALCIALGSDGLRGELTLLRSARALAALEG-----------------ATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC-----------------CCcCCHHHHHHHHHHHH
Confidence 2234455555433 2 56778888877766664332 33599999999988754
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=4e-13 Score=113.47 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=110.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+++++.+...+.. +.+ .+++|+||||||||++++++++.+..
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 94 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKS-----------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILE 94 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEE
Confidence 34577889999999999999998877742 112 34999999999999999999975421
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.++.++|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 95 LNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp ECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred EccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 1336778888
Q ss_pred CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCC
Q psy15622 89 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSV 167 (217)
Q Consensus 89 ~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~ 167 (217)
.+.+++.+|+. .+.++.|+.++...+++..+...++. ++..+..+++.+.| +.+.+.+++..+...+-+..
T Consensus 175 ~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~------ 246 (353)
T 1sxj_D 175 RIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLG------ 246 (353)
T ss_dssp GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHC------
T ss_pred hCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCc------
Confidence 89999999996 78899999999999999888765543 34456777777765 34455555554443321110
Q ss_pred cccccccccccCCCccHHHHHHHHHh
Q psy15622 168 PQIQAIPMAQLKRPVTKADFEMAIAK 193 (217)
Q Consensus 168 ~~~~~~~~~~~~~~vt~~df~~al~~ 193 (217)
....||.+|+..++..
T Consensus 247 ----------~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 247 ----------DGKNITSTQVEELAGV 262 (353)
T ss_dssp ----------SCCCCCHHHHHHHHTC
T ss_pred ----------cCccccHHHHHHHhCC
Confidence 0114777777776664
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=8.3e-13 Score=112.34 Aligned_cols=133 Identities=21% Similarity=0.231 Sum_probs=103.3
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
...++.+..|++++|.+.+++.|...+.. ++.+..++|+||+|+|||++++++++.+..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 34567888999999999999999988742 223457899999999999999999985521
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il 154 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEE
T ss_pred ccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEE
Confidence 2336
Q ss_pred ccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHH
Q psy15622 83 ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAA 154 (217)
Q Consensus 83 ~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~ 154 (217)
+|+.+..+.+.+.+|+ ..+.++.|+.++..++++..++..+.. ++..+..+++.+.| +.+++.+++..+.
T Consensus 155 ~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 155 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp EESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHH
T ss_pred EeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 7778888899999897 678899999999999999988776654 33346678888766 5777777766553
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.44 E-value=3.4e-12 Score=107.18 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=93.8
Q ss_pred CCCCCCCccc-c--hHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh---ch--------
Q psy15622 13 RPDVQWSDIA-N--QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY---NQ-------- 78 (217)
Q Consensus 13 ~~~~~~~dl~-g--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~---~~-------- 78 (217)
.|..+|++++ | .......+...+..+ ...+.+++|+||||||||++++++++.+ +.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4677899987 4 444455555555432 1234689999999999999999999855 21
Q ss_pred -----------------------------------------------------------hhccccCCCC---CCcHHHHh
Q psy15622 79 -----------------------------------------------------------VHCGASNFPW---NIDDAFLR 96 (217)
Q Consensus 79 -----------------------------------------------------------~~~~~t~~~~---~l~~~l~~ 96 (217)
+++++++.+. .+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS 154 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh
Confidence 2224555555 68999999
Q ss_pred hcc--ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHHHHH
Q psy15622 97 RLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDAAFM 156 (217)
Q Consensus 97 rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a~~~ 156 (217)
||. ..+.++. +.+++.++++..+...++. ++..++.+++.+ | +.+++..++..+...
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 996 6788998 9999999999999876553 344577788887 4 567777777665543
No 52
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.43 E-value=9.4e-13 Score=116.31 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=100.6
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc----------h-
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN----------Q- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~----------~- 78 (217)
...+.+-++++++|.++.++.+...+.- ....++||+||||||||++|+++|..+. .
T Consensus 171 ~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 171 TAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp HHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 3455677899999999999998877742 2236799999999999999999998751 0
Q ss_pred ------------------------------------------------------hhccccCCCC-----CCcHHHHhhcc
Q psy15622 79 ------------------------------------------------------VHCGASNFPW-----NIDDAFLRRLE 99 (217)
Q Consensus 79 ------------------------------------------------------~~~~~t~~~~-----~l~~~l~~rf~ 99 (217)
.++++||.+. .+++++.+||.
T Consensus 239 ~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 239 VMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp EECC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred EEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 2447777776 68999999998
Q ss_pred ccccccCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHccCCC-----HHhHHHHHHHHHHHH
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQLEGYS-----ASDIVVVCRDAAFMA 157 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~----~~~-~~~~~~~la~~~~g~s-----~~di~~l~~~a~~~a 157 (217)
.+.|+.|+.+++.+|++.++..+ +.. ++..+..++..+.+|. +.....++..|...+
T Consensus 319 -~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 319 -PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp -EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred -cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 59999999999999999888763 322 3344666666665544 446667776665433
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.42 E-value=6.7e-13 Score=111.35 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=92.0
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+++++.+...+.. +..+..+|++||||||||++++++|+.++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 45678889999999999999999988851 234567888999999999999999985543
Q ss_pred -----------------------------------------------------hhccccCCCCCCcHHHHhhcccccccc
Q psy15622 79 -----------------------------------------------------VHCGASNFPWNIDDAFLRRLEKRIYVP 105 (217)
Q Consensus 79 -----------------------------------------------------~~~~~t~~~~~l~~~l~~rf~~~i~~~ 105 (217)
.++++||.+..+++++++||. .+.|+
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~ 163 (324)
T 3u61_B 85 KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR-VITFG 163 (324)
T ss_dssp CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE-EEECC
T ss_pred CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc-EEEeC
Confidence 455899999999999999995 69999
Q ss_pred CCCHHHHHHHHHHHHhh-------CCCC-Cc-ccHHHHHHHccC
Q psy15622 106 LPSSSGRQELLRLILRQ-------VDLA-SD-LDLELVSDQLEG 140 (217)
Q Consensus 106 ~p~~~~r~~il~~~l~~-------~~~~-~~-~~~~~la~~~~g 140 (217)
.|+.+++.++++.++.. .++. ++ ..++.+++.+.|
T Consensus 164 ~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 164 QPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 99999987776555432 2332 22 445667766554
No 54
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.42 E-value=9.3e-14 Score=121.42 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=49.0
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHhchhh----------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH---------------- 80 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~~~~~---------------- 80 (217)
++|+|++++++.|...+..+...+.++.... .++.+++|+||||||||++|+++|+.++..+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4689999999999999987766555554433 3568899999999999999999998665411
Q ss_pred ------------------------------------------------------ccc-cCCCCCCcHHHHh--hcccccc
Q psy15622 81 ------------------------------------------------------CGA-SNFPWNIDDAFLR--RLEKRIY 103 (217)
Q Consensus 81 ------------------------------------------------------~~~-t~~~~~l~~~l~~--rf~~~i~ 103 (217)
+++ ||+++.+|+++++ ||++.|+
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 112 9999999999999 9999999
Q ss_pred ccCCCHH-HHHHHH
Q psy15622 104 VPLPSSS-GRQELL 116 (217)
Q Consensus 104 ~~~p~~~-~r~~il 116 (217)
+++|+.. .|.+|+
T Consensus 175 i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 175 IDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------
T ss_pred EcCCCCccchhhhh
Confidence 9999987 566664
No 55
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=4.9e-12 Score=105.48 Aligned_cols=130 Identities=21% Similarity=0.187 Sum_probs=98.7
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+++++.+...+.. +.. .+++|+||+|+|||++|+++++.+..
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~ 82 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 82 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe
Confidence 45578889999999999999999987752 122 35999999999999999999975421
Q ss_pred -----------------------------------------------------------hhccccCCCCCCcHHHHhhcc
Q psy15622 79 -----------------------------------------------------------VHCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 79 -----------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~ 99 (217)
.++.+++.+..+.+.+.+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 83 NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp ETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred eccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 334778888899999999987
Q ss_pred ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
.+.|+.++.++..++++..+...+.. ++..++.+++.+.| +.+.+.++++.
T Consensus 163 -~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 163 -IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 78899999999999999888766653 33446667776655 44444444443
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.38 E-value=8.7e-13 Score=109.71 Aligned_cols=142 Identities=18% Similarity=0.266 Sum_probs=104.8
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
++++|.+.+++.+...+...... .....+|...++|+||||||||++|+++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46889999999998888642110 0111234467999999999999999999985411
Q ss_pred --------------------------------------------------------------------hhccccCC----
Q psy15622 79 --------------------------------------------------------------------VHCGASNF---- 86 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~---- 86 (217)
++++|||.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~ 173 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPL 173 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHH
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHH
Confidence 16688887
Q ss_pred ----------------------CCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHH
Q psy15622 87 ----------------------PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELV 134 (217)
Q Consensus 87 ----------------------~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~l 134 (217)
...+++++++||+..+.+++|+.+++..|++.++.+. +.. ++..+..|
T Consensus 174 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 253 (311)
T 4fcw_A 174 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFL 253 (311)
T ss_dssp HHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred HHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHH
Confidence 3467888999999999999999999999999988653 111 22335566
Q ss_pred HHHcc--CCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 135 SDQLE--GYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 135 a~~~~--g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
++..- ..+.+++.+++..+...++.+.+.
T Consensus 254 ~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 254 AERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp HHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred HHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 66543 567899999999998888877654
No 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.38 E-value=3.2e-12 Score=106.26 Aligned_cols=118 Identities=19% Similarity=0.122 Sum_probs=91.4
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+.+++.+...+.. +.. .+++|+||+|||||++++++++.+..
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 45678889999999999999988876632 122 24999999999999999999986410
Q ss_pred -----------------------------------------------------------hhccccCCCCCCcHHHHhhcc
Q psy15622 79 -----------------------------------------------------------VHCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 79 -----------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~ 99 (217)
.++.++|.+..+.+++.+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 75 NASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred eCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 344778888899999999986
Q ss_pred ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcc
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLE 139 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~ 139 (217)
.+.|+.|+.++..+++...+...++. ++..++.+++.+.
T Consensus 155 -~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 194 (319)
T 2chq_A 155 -VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG 194 (319)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTT
T ss_pred -EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 78999999999999999998876654 3334555565443
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.37 E-value=2.1e-12 Score=120.13 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=120.9
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------------- 78 (217)
.+-+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+..
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 346789999999999888877632 23478999999999999999999986511
Q ss_pred --------------------------------------------------------------------hhccccCC----
Q psy15622 79 --------------------------------------------------------------------VHCGASNF---- 86 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~---- 86 (217)
.++++|+.
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHH
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHh
Confidence 12244543
Q ss_pred -CCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHccC-----CCHHhHHHHHHHHHH
Q psy15622 87 -PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQLEG-----YSASDIVVVCRDAAF 155 (217)
Q Consensus 87 -~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~----~~~-~~~~~~~la~~~~g-----~s~~di~~l~~~a~~ 155 (217)
...+|+++.+||. .+.++.|+.+++.++++.+...+ ++. .+..+..++..+.+ +.+..+..++.+|..
T Consensus 329 ~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 329 NIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp CCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHH
Confidence 2346788999998 69999999999999999887642 221 23345556655544 455677777776653
Q ss_pred HHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHhCC
Q psy15622 156 MAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR----KTVTAADIRQFEEWNEKFGS 215 (217)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~----p~~~~~~i~~~~~~~~~~~~ 215 (217)
.+.. .. .......++.+|+..++.... +.+.|++...+....+.+..
T Consensus 408 ~~~~---~~----------~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~ 458 (758)
T 1r6b_X 408 RARL---MP----------VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKM 458 (758)
T ss_dssp HHHH---SS----------SCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTT
T ss_pred HHhc---cc----------ccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHh
Confidence 3211 00 001135699999999998864 25677887777766665543
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=2.8e-11 Score=102.91 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=112.2
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh---------ch------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY---------NQ------ 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~---------~~------ 78 (217)
++...++++|.+...+.+...+...+. ...+..++|+||||||||++++++++.+ +.
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 334458999999999999887743211 1245789999999999999999998755 21
Q ss_pred --------------------------------------------------------------------------------
Q psy15622 79 -------------------------------------------------------------------------------- 78 (217)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (217)
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~ 165 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDR 165 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC---
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCC
Confidence
Q ss_pred ---hhccccCCC---CCCcHHHHhhccc-cccccCCCHHHHHHHHHHHHhh--CCC-CCcccHHHHHHHcc---CCCHHh
Q psy15622 79 ---VHCGASNFP---WNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQ--VDL-ASDLDLELVSDQLE---GYSASD 145 (217)
Q Consensus 79 ---~~~~~t~~~---~~l~~~l~~rf~~-~i~~~~p~~~~r~~il~~~l~~--~~~-~~~~~~~~la~~~~---g~s~~d 145 (217)
.++++||.+ ..+++.+.+||.. .+.|+.++.++..++++..+.. .+. .++..+..+++.+. | .++.
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~ 244 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARR 244 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHH
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHH
Confidence 123566666 6788999999975 8999999999999999988864 111 13334666777776 5 4666
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 146 IVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 146 i~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
+.+++..|...+.... ...++.+|+..|++...
T Consensus 245 ~~~~l~~a~~~a~~~~-----------------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 245 ALDLLRVAGEIAERRR-----------------EERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHTT-----------------CSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHh
Confidence 7777777765554321 34588899888887663
No 60
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=1.5e-11 Score=109.89 Aligned_cols=139 Identities=18% Similarity=0.149 Sum_probs=91.0
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhc-CChhhhhhhc----CCCceEEEecCCCCcHHHHHHHHHHHhch-----
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPL-EKPSYFQHIR----KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~-~~~~~~~~~~----~~~~~vll~Gp~G~GKTtla~aia~~~~~----- 78 (217)
+..++.+.+|++++|.+.+++.|.+.+.... ..+..+...+ .++++++|+||||||||++|+++|+.++.
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4567888999999999999999998886321 1111122111 24578999999999999999999985543
Q ss_pred ------------------------------------------------------------------------hhccccCC
Q psy15622 79 ------------------------------------------------------------------------VHCGASNF 86 (217)
Q Consensus 79 ------------------------------------------------------------------------~~~~~t~~ 86 (217)
.++.+++.
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~ 188 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNE 188 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESC
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 01122222
Q ss_pred C--CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHHH
Q psy15622 87 P--WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRDA 153 (217)
Q Consensus 87 ~--~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~a 153 (217)
. ..++ .+ +|+...+.|+.|+.+++.+++...+...++. ++..+..+++.+. +|+..++...
T Consensus 189 ~~~~~l~-~l-~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~----GdiR~~i~~L 252 (516)
T 1sxj_A 189 RNLPKMR-PF-DRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR----GDIRQVINLL 252 (516)
T ss_dssp TTSSTTG-GG-TTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT----TCHHHHHHHH
T ss_pred CCCccch-hh-HhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CcHHHHHHHH
Confidence 1 1222 22 2444578899999999999998877654432 2334777777754 4665555443
No 61
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=1.5e-11 Score=102.39 Aligned_cols=129 Identities=18% Similarity=0.110 Sum_probs=96.7
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch-----------
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----------- 78 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~----------- 78 (217)
..++.+..|++++|.+.+++.+...+.. ++.+. ++|+||+|+|||++++++++.+..
T Consensus 12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 12 VEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 4467888999999999999999888742 22333 999999999999999999875311
Q ss_pred -----------------------------------------------------------hhccccCCCCCCcHHHHhhcc
Q psy15622 79 -----------------------------------------------------------VHCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 79 -----------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~ 99 (217)
.++.+|+.+..+.+.+.+|+.
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 80 ASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp TTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred CccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 233677888889999999986
Q ss_pred ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHHH
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCRD 152 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~ 152 (217)
.+.++.|+.++..+++...+...++. ++..+..+++.+.| +.+.+.+++..
T Consensus 160 -~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 -ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred -EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 88999999999999999888765543 33446677777755 34444444433
No 62
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.35 E-value=1.7e-13 Score=92.76 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHccCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHH
Q psy15622 110 SGRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEM 189 (217)
Q Consensus 110 ~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~ 189 (217)
++|.+||+.++++.++.+++++..||..++||||+||.++|++|++.|+++. ...||.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------------~~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHH
Confidence 3688999999999888888999999999999999999999999999999874 45699999999
Q ss_pred HHHhcC-CCCCHHHHHHH
Q psy15622 190 AIAKCR-KTVTAADIRQF 206 (217)
Q Consensus 190 al~~~~-p~~~~~~i~~~ 206 (217)
|++++. |+.+.++++.|
T Consensus 64 Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 64 AYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHTTCC-----------
T ss_pred HHHHHHcCcCChHHHHhh
Confidence 999994 77777777654
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.33 E-value=1e-11 Score=115.66 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=99.6
Q ss_pred ccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh----------ch--
Q psy15622 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY----------NQ-- 78 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~----------~~-- 78 (217)
....+-++++++|.++.++.+...+.- ....++||+||||||||++|+++|+.+ +.
T Consensus 172 ~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 345667899999999999999887742 234679999999999999999999875 10
Q ss_pred -----------------------------------------------------hhccccCCCC-----CCcHHHHhhccc
Q psy15622 79 -----------------------------------------------------VHCGASNFPW-----NIDDAFLRRLEK 100 (217)
Q Consensus 79 -----------------------------------------------------~~~~~t~~~~-----~l~~~l~~rf~~ 100 (217)
.++++||... .+++++.+||.
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~- 318 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ- 318 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE-
T ss_pred EEecccccccchHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCc-
Confidence 2447777776 79999999994
Q ss_pred cccccCCCHHHHHHHHHHHHhhCC----CC-CcccHHHHHHHc-----cCCCHHhHHHHHHHHHHHH
Q psy15622 101 RIYVPLPSSSGRQELLRLILRQVD----LA-SDLDLELVSDQL-----EGYSASDIVVVCRDAAFMA 157 (217)
Q Consensus 101 ~i~~~~p~~~~r~~il~~~l~~~~----~~-~~~~~~~la~~~-----~g~s~~di~~l~~~a~~~a 157 (217)
.+.|+.|+.+++.+|++.+..... .. .+..+..++..+ .++.+.....++..|...+
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 699999999999999998876632 21 233345555544 3556677777777665443
No 64
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=8.6e-12 Score=105.48 Aligned_cols=125 Identities=19% Similarity=0.173 Sum_probs=89.1
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ---------- 78 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~---------- 78 (217)
+..++.+.+|++++|.+.+++.|...+.. ++.+ +++|+|||||||||+++++|+.+..
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 35578899999999999999999887742 1222 3999999999999999999986421
Q ss_pred -----------------------------------------------------------hhccccCCCCCCcHHHHhhcc
Q psy15622 79 -----------------------------------------------------------VHCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 79 -----------------------------------------------------------~~~~~t~~~~~l~~~l~~rf~ 99 (217)
.++.++|.+..+.+++.+|+.
T Consensus 83 ~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 83 NASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp CTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred cCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 122446777778888999986
Q ss_pred ccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHH
Q psy15622 100 KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVC 150 (217)
Q Consensus 100 ~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~ 150 (217)
.+.|+.++.++..+.+...++..++. ++.....+++.+ ++++..+.
T Consensus 163 -~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s----~G~~r~~~ 209 (340)
T 1sxj_C 163 -RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELS----NGDMRRVL 209 (340)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHH----TTCHHHHH
T ss_pred -eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHH
Confidence 67788888888888888888544432 222344455544 44655443
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=1.2e-10 Score=99.28 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=112.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCc--eEEEecCCCCcHHHHHHHHHHHh----ch----------
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWK--GVLMVGPPGTGKTMLAKAVAIVY----NQ---------- 78 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKTtla~aia~~~----~~---------- 78 (217)
+...++++|.+...+.+...+..... +..+. .++|+||+|||||++++++++.+ +.
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34458999999999999888753211 12234 79999999999999999998755 11
Q ss_pred ----------------------------------------------------------------------------hhcc
Q psy15622 79 ----------------------------------------------------------------------------VHCG 82 (217)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (217)
.+++
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 1224
Q ss_pred ccCCC---CCCcHHHHhhccc-cccccCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHccCC--------CHHhHH
Q psy15622 83 ASNFP---WNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGY--------SASDIV 147 (217)
Q Consensus 83 ~t~~~---~~l~~~l~~rf~~-~i~~~~p~~~~r~~il~~~l~~~---~~~~~~~~~~la~~~~g~--------s~~di~ 147 (217)
+++.+ ..+++.+.+||.. .+.|+.++.++..+++...+... ...++..+..+++.+.+. .+..+.
T Consensus 165 ~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~ 244 (389)
T 1fnn_A 165 VGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 244 (389)
T ss_dssp EESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHH
T ss_pred EECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 56666 5678888888875 78999999999999999887651 122334566778887322 456677
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcCCCCCHHH
Q psy15622 148 VVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAAD 202 (217)
Q Consensus 148 ~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p~~~~~~ 202 (217)
.++..|...|..+. ...++.+|+..++.........+.
T Consensus 245 ~~l~~a~~~a~~~~-----------------~~~i~~~~v~~~~~~~~~~~~~~~ 282 (389)
T 1fnn_A 245 DILYRSAYAAQQNG-----------------RKHIAPEDVRKSSKEVLFGISEEV 282 (389)
T ss_dssp HHHHHHHHHHHHTT-----------------CSSCCHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHhC-----------------CCCcCHHHHHHHHHHHhhhhHHHH
Confidence 77777776654332 235777888888777665444333
No 66
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=3.3e-12 Score=115.91 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=68.6
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhh-hcCCCceEEEecCCCCcHHHHHHHHHHHhch-------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQH-IRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------- 78 (217)
..++|++++++.+...+. -..+..... ..+...++||+||||||||++|+++|+.++.
T Consensus 295 ~~I~G~e~vk~al~~~l~--~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF--GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTT--CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHh--CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 357888888777643321 111111111 1122347999999999999999999975432
Q ss_pred ---------------------------------------------------------------hhccccCCCC-------
Q psy15622 79 ---------------------------------------------------------------VHCGASNFPW------- 88 (217)
Q Consensus 79 ---------------------------------------------------------------~~~~~t~~~~------- 88 (217)
.+++|||.+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~ 452 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER 452 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc
Confidence 2558888876
Q ss_pred ------CCcHHHHhhcccc-ccccCCCHHHHHHHHHHHHhh
Q psy15622 89 ------NIDDAFLRRLEKR-IYVPLPSSSGRQELLRLILRQ 122 (217)
Q Consensus 89 ------~l~~~l~~rf~~~-i~~~~p~~~~r~~il~~~l~~ 122 (217)
.+++++++||+.. +..+.|+.+ ...|.+.++..
T Consensus 453 ~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 453 PVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 8999999999854 556667777 77888877754
No 67
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3e-11 Score=102.19 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=98.0
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh-c----------
Q psy15622 9 IIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY-N---------- 77 (217)
Q Consensus 9 ~~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~-~---------- 77 (217)
+..++.+.+|++++|.+.+.+.+...+. . .++.+. ++|+||+|+||||+++++++.+ +
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSD---Q-------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTT---C-------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHh---h-------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 5678899999999999999988876651 0 122334 9999999999999999999832 0
Q ss_pred ----------------------------------------------------------------h---------------
Q psy15622 78 ----------------------------------------------------------------Q--------------- 78 (217)
Q Consensus 78 ----------------------------------------------------------------~--------------- 78 (217)
.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~ 152 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQA 152 (354)
T ss_dssp -------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHH
T ss_pred eeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHH
Confidence 0
Q ss_pred -------------hhccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-C-cccHHHHHHHccCCCH
Q psy15622 79 -------------VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-S-DLDLELVSDQLEGYSA 143 (217)
Q Consensus 79 -------------~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~-~~~~~~la~~~~g~s~ 143 (217)
.++.+|+.+..+.+.+.+|+ ..+.|+.|+.++..++++..++..++. + +..+..+++.+.| +.
T Consensus 153 ~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~ 230 (354)
T 1sxj_E 153 ALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NL 230 (354)
T ss_dssp HHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CH
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CH
Confidence 12266778888889999998 778999999999999999988766543 3 4456777877655 44
Q ss_pred HhHHHHHHHH
Q psy15622 144 SDIVVVCRDA 153 (217)
Q Consensus 144 ~di~~l~~~a 153 (217)
+++.++++.+
T Consensus 231 r~a~~~l~~~ 240 (354)
T 1sxj_E 231 RVSLLMLESM 240 (354)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=2.3e-10 Score=97.52 Aligned_cols=150 Identities=17% Similarity=0.054 Sum_probs=106.5
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh-----------ch--------
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY-----------NQ-------- 78 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~-----------~~-------- 78 (217)
.++++|.++..+.+...+..... +..+..++|+||+|||||++++++++.+ +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 38899999999999988753221 1234689999999999999999998643 11
Q ss_pred ---------------------------------------------------------------------------hhccc
Q psy15622 79 ---------------------------------------------------------------------------VHCGA 83 (217)
Q Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (217)
.++++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~ 170 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMI 170 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEE
Confidence 12356
Q ss_pred cCCC---CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhh----CCCCCcccHHHHHHHccCC--CHHhHHHHHHHHH
Q psy15622 84 SNFP---WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLASDLDLELVSDQLEGY--SASDIVVVCRDAA 154 (217)
Q Consensus 84 t~~~---~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~la~~~~g~--s~~di~~l~~~a~ 154 (217)
||.+ ..+++.+.+||...+.|+.++.++..++++..+.. ..+ ++..++.+++.+.+. ....+.+++..|.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6766 67899999999889999999999999999998864 222 333466677776622 2344455666655
Q ss_pred HHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 155 FMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
..|. ....++.+|+..+++...
T Consensus 250 ~~a~-------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 250 QLAS-------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHTT-------------------SSSCCCHHHHHHHHHHHH
T ss_pred HHhc-------------------CCCccCHHHHHHHHHHHh
Confidence 4442 034588888888877654
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.23 E-value=3.7e-11 Score=102.49 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=61.4
Q ss_pred CcHHHHhhccccccccCCCHHHHHHHHHH----HHhh-------CCCC---CcccHHHHHH--HccCCCHHhHHHHHHHH
Q psy15622 90 IDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILRQ-------VDLA---SDLDLELVSD--QLEGYSASDIVVVCRDA 153 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~~~r~~il~~----~l~~-------~~~~---~~~~~~~la~--~~~g~s~~di~~l~~~a 153 (217)
+.++++.||+..+.|+.|+.+.+.+|+.. ++.+ .+.. .+..++.|++ ....+..+++.+++..+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 67888999999999999999999999886 3321 1221 2233556665 33556779999999998
Q ss_pred HHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHH
Q psy15622 154 AFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIA 192 (217)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~ 192 (217)
...++.+....... ....||.+++++.+.
T Consensus 319 ~~~~l~~~~~~~~~----------~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 319 LLDTMYDLPSMEDV----------EKVVIDESVIDGQSE 347 (363)
T ss_dssp HHHHHHSTTTCCCS----------EEEECHHHHTTCCSC
T ss_pred HHHHHHhcccccCC----------ceeEEcHHHHhCcCC
Confidence 88777654222110 134577777665443
No 70
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.23 E-value=9.2e-12 Score=102.00 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhhhh-cCCCceEEEecCCCCcHHHHHHHHHHHhch------------------
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHI-RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ------------------ 78 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~G~GKTtla~aia~~~~~------------------ 78 (217)
.+.++|.+...+.+........ ...... ..++.+++|+||||||||++|+++|..++.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 4567888777666665321110 111111 245678999999999999999999974432
Q ss_pred ------------------------------------------------------------hhccccCCCCCCcH-HHHhh
Q psy15622 79 ------------------------------------------------------------VHCGASNFPWNIDD-AFLRR 97 (217)
Q Consensus 79 ------------------------------------------------------------~~~~~t~~~~~l~~-~l~~r 97 (217)
.++++||.++.+++ .+.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~r 188 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNA 188 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcc
Confidence 24578888877777 56679
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccCC----CHHhHHHHHHHHHHHHHHHHHhCCCCcccccc
Q psy15622 98 LEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGY----SASDIVVVCRDAAFMAMRAAIRGKSVPQIQAI 173 (217)
Q Consensus 98 f~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~----s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 173 (217)
|...+.+|.++. |.++...+.....+ .+.++..+++.+.|+ +.+++.+++..|...
T Consensus 189 f~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~----------------- 248 (272)
T 1d2n_A 189 FSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM----------------- 248 (272)
T ss_dssp SSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-----------------
T ss_pred cceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-----------------
Confidence 988888876554 34444444433333 445678888888887 344444444433211
Q ss_pred cccccCCCccHHHHHHHHHhcCC
Q psy15622 174 PMAQLKRPVTKADFEMAIAKCRK 196 (217)
Q Consensus 174 ~~~~~~~~vt~~df~~al~~~~p 196 (217)
......++|..+++....
T Consensus 249 -----~~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 249 -----DPEYRVRKFLALLREEGA 266 (272)
T ss_dssp -----CGGGHHHHHHHHHHHTSC
T ss_pred -----chHHHHHHHHHHHHHcCC
Confidence 122556778888877653
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.4e-10 Score=98.48 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=106.6
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh------ch---------
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY------NQ--------- 78 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~------~~--------- 78 (217)
++...++++|.++..+.+.+.+..... ...+..++|+||+|||||++++++++.+ +.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 344558999999999999877643211 1345789999999999999999998754 21
Q ss_pred ------------------------------------------------------------------------------hh
Q psy15622 79 ------------------------------------------------------------------------------VH 80 (217)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (217)
.+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISF 166 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEE
Confidence 12
Q ss_pred ccccCCC---CCCcHHHHhhcc-ccccccCCCHHHHHHHHHHHHhhCC---CCCcccHHHHHHHcc---CCCHHhHHHHH
Q psy15622 81 CGASNFP---WNIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQVD---LASDLDLELVSDQLE---GYSASDIVVVC 150 (217)
Q Consensus 81 ~~~t~~~---~~l~~~l~~rf~-~~i~~~~p~~~~r~~il~~~l~~~~---~~~~~~~~~la~~~~---g~s~~di~~l~ 150 (217)
+++++.+ ..+++.+.+||. ..+.++.++.++..+++...+.... ...+..+..+++.+. | ++..+..++
T Consensus 167 I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll 245 (386)
T 2qby_A 167 IGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DARRALDLL 245 (386)
T ss_dssp EEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHH
T ss_pred EEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 3566655 457788888886 4899999999999999998776321 112333555666665 4 456666677
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 151 RDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 151 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
..+...+.... ...++.+|+..|++...
T Consensus 246 ~~a~~~a~~~~-----------------~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 246 RVSGEIAERMK-----------------DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHTT-----------------CSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----------------CCccCHHHHHHHHHHHh
Confidence 77765553321 34577888877766653
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.22 E-value=3.5e-11 Score=106.92 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=35.0
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..++|.+++++.+...+.. +.++||+||||||||++|+++|..+
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHH
Confidence 3578888888777655531 3689999999999999999998744
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.21 E-value=4.5e-12 Score=97.05 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred ccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 11 ~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
....+..|++++|.++..+.+.+.+.. ..+.+++|+||+|||||++++++++.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999998888877632 234679999999999999999999865
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.20 E-value=4.7e-11 Score=111.16 Aligned_cols=142 Identities=21% Similarity=0.251 Sum_probs=101.3
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch--------------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-------------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~-------------------- 78 (217)
++++|++.+++.+...+...... .....+|..++||+||||||||++|+++|..+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 46899999999998888642210 0011133346999999999999999999986511
Q ss_pred ------------------------------------------------------hhccccCCCCC------------CcH
Q psy15622 79 ------------------------------------------------------VHCGASNFPWN------------IDD 92 (217)
Q Consensus 79 ------------------------------------------------------~~~~~t~~~~~------------l~~ 92 (217)
.+++|||.+.. +.+
T Consensus 568 ~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p 647 (758)
T 3pxi_A 568 GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRP 647 (758)
T ss_dssp ---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCH
T ss_pred cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCH
Confidence 34578886654 788
Q ss_pred HHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHH--ccCCCHHhHHHHHHHHHHHHHHH
Q psy15622 93 AFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELVSDQ--LEGYSASDIVVVCRDAAFMAMRA 160 (217)
Q Consensus 93 ~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~la~~--~~g~s~~di~~l~~~a~~~a~~~ 160 (217)
.++.||+..+.|+.|+.+++.+|++.++..+ +.. ++..++.|++. ...+..+++.+++..+...++.+
T Consensus 648 ~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 648 EFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp HHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHH
T ss_pred HHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887653 221 22234556553 23567789999999988888877
Q ss_pred HHh
Q psy15622 161 AIR 163 (217)
Q Consensus 161 ~~~ 163 (217)
.+.
T Consensus 728 ~~l 730 (758)
T 3pxi_A 728 ELL 730 (758)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.16 E-value=8e-11 Score=109.50 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=100.8
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch---------------------
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ--------------------- 78 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~--------------------- 78 (217)
+++|++++++.+...+...... .....+|...++|+||||||||++|+++|..++.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 3678888887777766431110 0011234457999999999999999999985541
Q ss_pred ----------------------------------------------------------------hhccccCCCC------
Q psy15622 79 ----------------------------------------------------------------VHCGASNFPW------ 88 (217)
Q Consensus 79 ----------------------------------------------------------------~~~~~t~~~~------ 88 (217)
.+++|||.+.
T Consensus 536 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~ 615 (758)
T 1r6b_X 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_dssp CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----
T ss_pred CCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhc
Confidence 1668888754
Q ss_pred -------------------CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------C--CC-CcccHHHHHHHc-
Q psy15622 89 -------------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------D--LA-SDLDLELVSDQL- 138 (217)
Q Consensus 89 -------------------~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~--~~-~~~~~~~la~~~- 138 (217)
.+++++++||+..+.|+.|+.+++..|++.++.+. + +. ++..++.|++..
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 695 (758)
T 1r6b_X 616 SIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGY 695 (758)
T ss_dssp ------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHC
T ss_pred ccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCC
Confidence 57889999999999999999999999999988642 1 11 223355666544
Q ss_pred -cCCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 139 -EGYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 139 -~g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
.++..+++.++++.+...++.+.+.
T Consensus 696 ~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 696 DRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp BTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999998877766543
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.13 E-value=1.6e-10 Score=98.92 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=61.0
Q ss_pred CcHHHHhhccccccccCCCHHHHHHHHHH----HHh----h---CCCC---CcccHHHHHHHcc--CCCHHhHHHHHHHH
Q psy15622 90 IDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILR----Q---VDLA---SDLDLELVSDQLE--GYSASDIVVVCRDA 153 (217)
Q Consensus 90 l~~~l~~rf~~~i~~~~p~~~~r~~il~~----~l~----~---~~~~---~~~~~~~la~~~~--g~s~~di~~l~~~a 153 (217)
+.+.+++|++..+.|+.++.++...++.. ++. . .+.. ++..+..|++... ....+++.+++..+
T Consensus 256 ~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~ 335 (376)
T 1um8_A 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDF 335 (376)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred CChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 56788889988899999999998888862 222 1 1111 2233556666543 46789999999988
Q ss_pred HHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhc
Q psy15622 154 AFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKC 194 (217)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 194 (217)
+..++.+..... .....||.+++..+.+.+
T Consensus 336 ~~~~~~~~~~~~-----------~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 336 CLDIMFDLPKLK-----------GSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHHHHTGGGGT-----------TSEEEECHHHHTTSSCCE
T ss_pred HHHHHhhccCCC-----------CCEEEEeHHHhcCCCCce
Confidence 887776543211 113458888887755443
No 77
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.05 E-value=5.2e-10 Score=101.67 Aligned_cols=53 Identities=32% Similarity=0.511 Sum_probs=45.3
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..++++..|++++|.+.+++.+...+. .+..++|+|||||||||+|++|++.+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred cccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 456778899999999999988887774 24689999999999999999998754
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.05 E-value=1.9e-10 Score=108.41 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=93.4
Q ss_pred cCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh----------ch---
Q psy15622 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY----------NQ--- 78 (217)
Q Consensus 12 ~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~----------~~--- 78 (217)
...+.++++++|.++.+..+.+.+.. ..+.+++|+||||||||++++++|+.+ +.
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 34467899999999988888876632 234679999999999999999999865 21
Q ss_pred ----------------------------------------------------------------------hhccccCCCC
Q psy15622 79 ----------------------------------------------------------------------VHCGASNFPW 88 (217)
Q Consensus 79 ----------------------------------------------------------------------~~~~~t~~~~ 88 (217)
.++++|+.+.
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDE 310 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHH
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchH
Confidence 2235555443
Q ss_pred ----CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcc-----CCCHHhHHHHHHHHH
Q psy15622 89 ----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQLE-----GYSASDIVVVCRDAA 154 (217)
Q Consensus 89 ----~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~----~~~-~~~~~~~la~~~~-----g~s~~di~~l~~~a~ 154 (217)
.+++++.+||+. +.++.|+.+++.++++.++... +.. .+..+..++..+. .|.+.....++.+|.
T Consensus 311 ~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 311 YREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAA 389 (854)
T ss_dssp HHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHH
Confidence 468889999985 8999999999999999887643 221 2333455555543 455666666666665
Q ss_pred HH
Q psy15622 155 FM 156 (217)
Q Consensus 155 ~~ 156 (217)
..
T Consensus 390 a~ 391 (854)
T 1qvr_A 390 AR 391 (854)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.03 E-value=6.4e-10 Score=104.78 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=102.5
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc---h-----------------
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN---Q----------------- 78 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~---~----------------- 78 (217)
++++|.+.+++.+...+..... -.....+|...++|+||||||||++|++++..+. .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~---g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGG---GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence 5689999999998888753211 0001123446899999999999999999998551 0
Q ss_pred --------------------------------------------------------------------hhccccCCC---
Q psy15622 79 --------------------------------------------------------------------VHCGASNFP--- 87 (217)
Q Consensus 79 --------------------------------------------------------------------~~~~~t~~~--- 87 (217)
++|+|||.+
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~ 714 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPL 714 (854)
T ss_dssp GC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHH
T ss_pred HHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHH
Confidence 156788862
Q ss_pred -----------------------CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHH
Q psy15622 88 -----------------------WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA---SDLDLELV 134 (217)
Q Consensus 88 -----------------------~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~l 134 (217)
..+.+.++.||+..+.|++|+.++...|++.++..+ +.. ++..++.|
T Consensus 715 ~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L 794 (854)
T 1qvr_A 715 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFL 794 (854)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHH
Confidence 245678888999898888899999999999888632 111 22335566
Q ss_pred HHHcc--CCCHHhHHHHHHHHHHHHHHHHHh
Q psy15622 135 SDQLE--GYSASDIVVVCRDAAFMAMRAAIR 163 (217)
Q Consensus 135 a~~~~--g~s~~di~~l~~~a~~~a~~~~~~ 163 (217)
++..- .+..+++.+++..+...++.+.+.
T Consensus 795 ~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 795 AERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp HHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 66544 578899999999999888877654
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.00 E-value=1.7e-10 Score=87.98 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=44.6
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.....+..|++++|.+...+.+.+.+.. ..+.+++|+||+|||||+++++++..+
T Consensus 13 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 13 TALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3345567899999999988888877632 234679999999999999999999876
No 81
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.95 E-value=4.8e-09 Score=85.34 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 16 ~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.+|++++|.+.....+.+.+.... ..+..++|+||||||||++|++++..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 578999999999888887775422 12367999999999999999999863
No 82
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.85 E-value=4.1e-09 Score=88.42 Aligned_cols=43 Identities=9% Similarity=0.008 Sum_probs=32.8
Q ss_pred ccccCCCCCC----cHHHHhhcc-ccccccCCCHHHHHHHHHHHHhhC
Q psy15622 81 CGASNFPWNI----DDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV 123 (217)
Q Consensus 81 ~~~t~~~~~l----~~~l~~rf~-~~i~~~~p~~~~r~~il~~~l~~~ 123 (217)
++++|..+.. ++++.+||. .++.|+.++.++..+|++.-++..
T Consensus 167 I~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 167 ICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp EEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 3667766543 445567886 679999999999999999888764
No 83
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.80 E-value=1.7e-08 Score=84.09 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=37.3
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
++++|.+.....+.+.+.... ..+..++|+||||||||++|++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 468898888888888775421 23467999999999999999999873
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.73 E-value=6.2e-08 Score=81.68 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=41.1
Q ss_pred hccccCCCCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHccC
Q psy15622 80 HCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 140 (217)
Q Consensus 80 ~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g 140 (217)
++.+|+.++.+.+.+++|+. .+.|+.|+.++..+++.... .+ ++..+..+++.+.|
T Consensus 141 ~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 141 FFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG 196 (334)
T ss_dssp EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT
T ss_pred EEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC
Confidence 34778889999999999985 68999999998888887654 22 23344556666654
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.60 E-value=6.2e-08 Score=74.14 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=39.9
Q ss_pred cCCCCCCCcccch----HHHHHHHHHHHHhhcCChhhhhhhc-CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 12 ERPDVQWSDIANQ----VKAKKLLQEAVILPLEKPSYFQHIR-KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 12 ~~~~~~~~dl~g~----~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.+.+|+++++. ..+.+.+.+++.. +. .++.+++|+||+||||||+++++++.+.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567889998863 3344444444432 11 2357899999999999999999999874
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.3e-07 Score=78.98 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc------h------------------
Q psy15622 23 NQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN------Q------------------ 78 (217)
Q Consensus 23 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~------~------------------ 78 (217)
|++++.+.|...+.. ++ ...+||+||+|+|||++++++|+..+ .
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHH
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHH
Confidence 566777777777642 12 35799999999999999999997421 0
Q ss_pred ---------------------------------------------hhccccCCCCCCcHHHHhhccccccccCCCHHHHH
Q psy15622 79 ---------------------------------------------VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 113 (217)
Q Consensus 79 ---------------------------------------------~~~~~t~~~~~l~~~l~~rf~~~i~~~~p~~~~r~ 113 (217)
.++.+|+.+..+.+++++| .+.|+.|+.++..
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~ 145 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFR 145 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHH
T ss_pred HHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHH
Confidence 3447778899999999999 8899999998888
Q ss_pred HHHHHHH
Q psy15622 114 ELLRLIL 120 (217)
Q Consensus 114 ~il~~~l 120 (217)
+.+...+
T Consensus 146 ~~L~~~~ 152 (305)
T 2gno_A 146 DLVKEKI 152 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887766
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.45 E-value=2.1e-06 Score=73.48 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=41.3
Q ss_pred CCCCCCcccchHHHHHHHHHHH-HhhcCChhhhhhhcCCCceEEE--ecCCCCcHHHHHHHHHHHh
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAV-ILPLEKPSYFQHIRKPWKGVLM--VGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll--~Gp~G~GKTtla~aia~~~ 76 (217)
|....++++|.+...+.|.+.+ ..... .....+..++| +||+|+|||++++.+++.+
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLS------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHT------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhc------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3444588999999999888877 43211 10023467999 9999999999999998644
No 88
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.45 E-value=2e-07 Score=69.00 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+++|.+...+.+.+.+... ...+..++|+||||||||++|++++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 6788888888888777532 1234679999999999999999999865
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.40 E-value=2.1e-07 Score=95.84 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=37.2
Q ss_pred hccccCCCC-----CCcHHHHhhccccccccCCCHHHHHHHHHHHHhh
Q psy15622 80 HCGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 122 (217)
Q Consensus 80 ~~~~t~~~~-----~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~ 122 (217)
++|++|.|. .|+++++||| .++.++.|+.+.+..|+..++..
T Consensus 1387 lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1387 IVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 458899984 8999999999 78999999999999999988854
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.39 E-value=4.1e-07 Score=70.65 Aligned_cols=56 Identities=27% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCCCCCcccchHH----HHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 14 PDVQWSDIANQVK----AKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 14 ~~~~~~dl~g~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
...+|+++++.+. +.+.+..++.... . ..++.+++|+||+|||||+++++++..+.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE-------P-GKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC-------S-SCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh-------h-ccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999987553 3333343332210 0 01237899999999999999999998774
No 91
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.38 E-value=7e-08 Score=71.42 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 20 DIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 20 dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+++|.+...+.+.+.+.... ..+..++|+||||||||++|++++....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 57898888888888875321 2346799999999999999999988765
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.23 E-value=5.1e-07 Score=89.69 Aligned_cols=84 Identities=20% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHhhcCC----------hhhhhh-----------------hcCCCce--EEEecCCCC
Q psy15622 13 RPDVQWSDIANQVKAKKLLQEAVILPLEK----------PSYFQH-----------------IRKPWKG--VLMVGPPGT 63 (217)
Q Consensus 13 ~~~~~~~dl~g~~~~~~~l~~~~~~~~~~----------~~~~~~-----------------~~~~~~~--vll~Gp~G~ 63 (217)
.+.++|+|++|++++++.+.+.+.+|+.+ +..++. .+-+|+| +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999999943 334433 1223455 999999999
Q ss_pred cHHHHHHHHHHHhchh-----hccccCCCCCCcHHHHhhcc
Q psy15622 64 GKTMLAKAVAIVYNQV-----HCGASNFPWNIDDAFLRRLE 99 (217)
Q Consensus 64 GKTtla~aia~~~~~~-----~~~~t~~~~~l~~~l~~rf~ 99 (217)
|||++|++++..-... ++.. .+.+++.+.+.|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~---~~~~~~~~~~~~G 1131 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDA---EHALDPIYARKLG 1131 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECT---TSCCCHHHHHHTT
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEc---ccchHHHHHHHhC
Confidence 9999999999755432 3322 4445555544443
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.15 E-value=2.3e-06 Score=71.32 Aligned_cols=55 Identities=27% Similarity=0.298 Sum_probs=37.0
Q ss_pred CCCCCCcccchH-H---HHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 14 PDVQWSDIANQV-K---AKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 14 ~~~~~~dl~g~~-~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.+|+++.+.. . +.+.+.+++..+ + ..++.+++|+||+|||||+||+++|..+.
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899988643 2 333333333211 0 01247899999999999999999999775
No 94
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.08 E-value=6.2e-06 Score=70.67 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|+++..+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 45677999999999999999999998765
No 95
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.05 E-value=8.3e-06 Score=65.34 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56678999999999999999999998765
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.02 E-value=5.1e-05 Score=66.61 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=31.2
Q ss_pred cCCCHHhHHHHHHHHHHHHHHHHHhCCCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 139 EGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 139 ~g~s~~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
-|.|++.+..+++.|...|.-+. ...|+.+|+..|++-+.
T Consensus 445 ~giSpR~leaLiRlA~A~A~L~g-----------------R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 445 LPVTRRQLESVERLAKAHARMRL-----------------SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcC-----------------cCCCCHHHHHHHHHHHH
Confidence 37888999999888877666554 45699999999987664
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.00 E-value=2.7e-06 Score=66.82 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=27.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhccccC
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASN 85 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~~~t~ 85 (217)
++++|+||||||||++|.++|+++..-++.-+|
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fan 91 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVN 91 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe
Confidence 579999999999999999999998654444344
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=3.5e-06 Score=65.38 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+++.++|+|||||||||+++.+++.++..++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 4567999999999999999999998876443
No 99
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.00 E-value=3.1e-06 Score=63.79 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=25.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..+.|+|||||||||+++.|++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999998876443
No 100
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.97 E-value=9.6e-06 Score=68.98 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|+++..+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 45677999999999999999999998765
No 101
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.96 E-value=4.3e-06 Score=63.80 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=26.1
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|+|||||||||+++.+|..++..++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999998876444
No 102
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.95 E-value=1.5e-05 Score=67.88 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|+++..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 45677899999999999999999998765
No 103
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.93 E-value=5.4e-06 Score=64.40 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=27.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhcc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCG 82 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~ 82 (217)
++.-++|.||+||||||+++.|++.++..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 45679999999999999999999988765543
No 104
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.93 E-value=1.1e-05 Score=66.26 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 45677999999999999999999998765
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.92 E-value=6.1e-06 Score=62.47 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=24.1
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+..|+|+|+|||||||+++.++..++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356899999999999999999998764
No 106
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.92 E-value=6.8e-06 Score=70.40 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHhhcC-Ch-------hhhhhh--c-CCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 23 NQVKAKKLLQEAVILPLE-KP-------SYFQHI--R-KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 23 g~~~~~~~l~~~~~~~~~-~~-------~~~~~~--~-~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
|..++++.+ +.+.+|.. .+ ..+..+ . .+++.++|+|||||||||+++++++.++..+
T Consensus 130 g~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 130 GSADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CCCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred ChHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 334566666 67776663 11 222222 2 4567899999999999999999999876543
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.91 E-value=4.4e-06 Score=62.24 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++..++|+||+|+|||+|++++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999884
No 108
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.90 E-value=7.2e-06 Score=65.75 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+..++|.||+||||||+++.|+..++.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999977664
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.89 E-value=7.5e-06 Score=63.57 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.|||||||||++++|++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567799999999999999999999884
No 110
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.88 E-value=1.4e-05 Score=67.98 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|+++..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 45677999999999999999999998765
No 111
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.88 E-value=7.8e-06 Score=61.83 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhcc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCG 82 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~~ 82 (217)
++..++|.|||||||||+++.+++.++..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34679999999999999999999988765543
No 112
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.87 E-value=1.9e-05 Score=64.40 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 46677999999999999999999998765
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.87 E-value=7.7e-06 Score=66.72 Aligned_cols=26 Identities=35% Similarity=0.495 Sum_probs=23.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++|+||||||||+++++||+++..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 57999999999999999999997654
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.87 E-value=6.9e-06 Score=61.61 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=24.5
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
-|+|.|||||||||+++.|+..++..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 5889999999999999999998876443
No 115
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.86 E-value=1.8e-05 Score=67.47 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++...+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 45677999999999999999999998765
No 116
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.85 E-value=1.8e-05 Score=67.24 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|+++..+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45677999999999999999999998765
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.84 E-value=7.7e-06 Score=62.63 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.1
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
++..++|.|||||||||+++.|++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 45679999999999999999999874
No 118
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.84 E-value=1.1e-05 Score=62.43 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-+.|.||+||||||+++.|++.++
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999999875
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.83 E-value=1e-05 Score=61.84 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=25.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|+|.|+|||||||+++.++..++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 33 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPL 33 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 46789999999999999999999887544
No 120
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.83 E-value=1.1e-05 Score=61.84 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.8
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.+.|.||+|||||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999997443
No 121
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.83 E-value=1e-05 Score=62.92 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+++.+.|.||+|+||||+++.|++++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999999875
No 122
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.83 E-value=2e-05 Score=63.93 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46677999999999999999999998765
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.83 E-value=1.1e-05 Score=61.64 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+++-+.|.||||+||||+++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346799999999999999999999875
No 124
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.82 E-value=1.9e-05 Score=67.44 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++||+++.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 45677999999999999999999998765
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.81 E-value=1e-05 Score=63.24 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35577999999999999999999999873
No 126
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.80 E-value=1.2e-05 Score=62.31 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=26.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|.|++||||||+++.|++.++..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 457999999999999999999999876554
No 127
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.80 E-value=1.3e-05 Score=60.99 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=25.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|+|+|||||||+++.++..++..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 356999999999999999999998876443
No 128
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.79 E-value=1.1e-05 Score=61.06 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.6
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.++|.|||||||||+++.||..++..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 5899999999999999999998876443
No 129
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.78 E-value=1.1e-05 Score=61.37 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=24.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..++|.|+|||||||+++.++..++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~ 32 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKK 32 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35689999999999999999998877544
No 130
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.78 E-value=1.4e-05 Score=62.38 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++-+.|.||+||||||++++|++.+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3556799999999999999999999885
No 131
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.77 E-value=3.3e-05 Score=64.30 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++++.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 56677999999999999999999998875
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.77 E-value=1.3e-05 Score=61.04 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
..|+|+|+|||||||+++.|+..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3589999999999999999999887644
No 133
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.76 E-value=1.6e-05 Score=61.87 Aligned_cols=27 Identities=30% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-+.|.||+||||||+++.|++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999999987
No 134
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.76 E-value=1.6e-05 Score=62.57 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=26.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++..|+|.|+|||||||+++.|+..++..++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 3467999999999999999999998876443
No 135
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.76 E-value=1.2e-05 Score=60.79 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH-Hhchh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI-VYNQV 79 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~-~~~~~ 79 (217)
.-|+|.|+|||||||+++.++. .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 5689999999999999999998 45543
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.75 E-value=1.5e-05 Score=61.13 Aligned_cols=25 Identities=36% Similarity=0.683 Sum_probs=22.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+-+.|.||+|+||||++++|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999876
No 137
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.75 E-value=1.9e-05 Score=59.45 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..+.|.||+|+||||++++|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455679999999999999999999998
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.74 E-value=1.6e-05 Score=62.18 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++.-++|.||+|+||||+++.|++.++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999998753
No 139
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.74 E-value=2.3e-05 Score=61.19 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+++-++|.||+|+|||||+++|++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999999876
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.74 E-value=1.8e-05 Score=60.70 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|+|.|+|||||||+++.++..++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 37 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTH 37 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46799999999999999999999887643
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.73 E-value=1.9e-05 Score=60.20 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=23.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..|+|.|+|||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999887
No 142
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.73 E-value=3e-05 Score=63.86 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 25 VKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+++.+.+.+.+...+... .....+..++|.|||||||||+++.++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~~----~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK----KAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445555555554333210 011234679999999999999999999877
No 143
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.73 E-value=1.7e-05 Score=61.37 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
++.-+.|.||+||||||+++.|++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999987
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.73 E-value=1.8e-05 Score=62.49 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++-+.|.||+|||||||++.|++.++
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567799999999999999999999883
No 145
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=1.8e-05 Score=60.42 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.1
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|+|.|+|||||||+++.++..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46799999999999999999999887543
No 146
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.71 E-value=2.2e-05 Score=60.82 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=25.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 356899999999999999999998876443
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.71 E-value=1.9e-05 Score=60.50 Aligned_cols=30 Identities=37% Similarity=0.498 Sum_probs=25.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHH-hchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIV-YNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~-~~~~~~ 81 (217)
+..++|+|+|||||||+++.++.. ++..++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 356999999999999999999998 665443
No 148
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.71 E-value=2.1e-05 Score=62.32 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++-|+|.|||||||+|.|+.|+..++...+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 366888999999999999999999887544
No 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.69 E-value=6.6e-05 Score=62.36 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=44.0
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+...|...-+.++|-+...+.|.+.+.. +..++|+||+|+|||++++.+++..+
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 3445666778899999999999887742 25799999999999999999998764
No 150
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.69 E-value=2.3e-05 Score=63.75 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..++|.||+||||||+++++++++..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 35567999999999999999999998865
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.69 E-value=2.3e-05 Score=61.00 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-++|+||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3457799999999999999999998774
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.69 E-value=1.9e-05 Score=63.80 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=24.4
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.++|+|||||||||+++.||+.++..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 4789999999999999999998876443
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.68 E-value=2.5e-05 Score=62.67 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
++..|+|.|||||||||+++.|+..++...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4578999999999999999999998876444
No 154
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.67 E-value=2.6e-05 Score=60.29 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=26.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch----hhccccCCC
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ----VHCGASNFP 87 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~----~~~~~t~~~ 87 (217)
+-|+|+||||+|||||++.|...++. .+-.||+.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 34899999999999999999876542 344556544
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.67 E-value=2.4e-05 Score=58.69 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=25.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..++|.|++||||||+++.||..++..++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999999999998886543
No 156
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.67 E-value=2.6e-05 Score=61.24 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+.|.||+||||||+++.|++.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998864
No 157
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.67 E-value=2.3e-05 Score=59.77 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.5
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999887
No 158
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.66 E-value=2e-05 Score=61.89 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=24.6
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
-++|.|||||||+|.|+.|+..++...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 3788999999999999999999987544
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.66 E-value=2.1e-05 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.8
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
-|+|.|||||||||+++.+ ..++..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 5889999999999999999 77765443
No 160
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.66 E-value=2.4e-05 Score=60.08 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=25.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|+|.|+|||||||+++.++..++..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 40 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH 40 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35799999999999999999999887544
No 161
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.66 E-value=2.8e-05 Score=61.61 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-+.|.||+|+|||||+++|++.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456789999999999999999999876
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.66 E-value=2.4e-05 Score=58.81 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
..|+|.|++||||||+++.++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 4589999999999999999999887544
No 163
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.65 E-value=2.4e-05 Score=61.11 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=24.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|.|||||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 4789999999999999999998876443
No 164
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.64 E-value=3.3e-05 Score=59.79 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=24.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+..|+|.|+|||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 456899999999999999999998875
No 165
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.64 E-value=7.3e-05 Score=62.09 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+||||+++.||+.+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35577999999999999999999998864
No 166
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.63 E-value=2.7e-05 Score=59.29 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|.|++||||||+++.++..++..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 357899999999999999999998875443
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.63 E-value=2.4e-05 Score=61.23 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=24.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|.|||||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999998876443
No 168
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.63 E-value=1.9e-05 Score=59.96 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=21.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..|+|.|+|||||||+++.++..++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56899999999999999999998876544
No 169
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.63 E-value=2.6e-05 Score=61.60 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=25.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 367999999999999999999998875443
No 170
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.62 E-value=3.4e-05 Score=64.16 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=25.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++.+.|+||+|||||||+++|++++.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 5667899999999999999999999983
No 171
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.61 E-value=1.7e-05 Score=63.08 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45677999999999999999999998765
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.60 E-value=7.8e-05 Score=64.66 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=37.1
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
...++++.-..+....+...+. .++..++|.||+||||||++++++++++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4667777665555555544421 24456899999999999999999998865
No 173
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.60 E-value=0.00058 Score=70.91 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=23.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+.++.||+|||||++++++|+.++.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~ 671 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGR 671 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTC
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCC
Confidence 467999999999999999999986665
No 174
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.60 E-value=3.8e-05 Score=60.39 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=25.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|+|.|||||||||+++.|+..++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 35699999999999999999999887543
No 175
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.60 E-value=2e-05 Score=63.21 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56678999999999999999999998764
No 176
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.60 E-value=3e-05 Score=60.89 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=25.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..|+|.|+|||||||+++.|+..++..++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 56899999999999999999999886554
No 177
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.59 E-value=3.5e-05 Score=57.66 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.8
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.|+|.|++||||||+++.++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 488999999999999999999887544
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.59 E-value=4.5e-05 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
++..+.|.|++||||||+++.++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 179
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.58 E-value=4.1e-05 Score=60.79 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=25.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..|+|.|++||||||+++.|+..++..++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 356999999999999999999998876444
No 180
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.58 E-value=7.8e-05 Score=63.19 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 22 ANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 22 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..+.+.+.+.+.+...+.. + ....++|+||+||||||++++||+.++..+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~-------g-~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED-------N-YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-------C-SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc-------C-CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34556666666666532220 0 113599999999999999999999888755
No 181
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.58 E-value=2.3e-05 Score=63.79 Aligned_cols=29 Identities=14% Similarity=0.421 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46677999999999999999999998765
No 182
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.58 E-value=3.8e-05 Score=59.40 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=24.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
..|+|.|++||||||+++.|+..++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~ 43 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVH 43 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 5689999999999999999999887543
No 183
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.57 E-value=4.3e-05 Score=59.32 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|+|.|++||||||+++.|+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999887543
No 184
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.57 E-value=4.8e-05 Score=57.58 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.2
Q ss_pred CCceEEEecCCCCcHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAV 72 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~ai 72 (217)
++.-+.|.|||||||||+++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4577999999999999999953
No 185
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.57 E-value=4.2e-05 Score=58.83 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.|+|.|++||||||+++.|++.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 478999999999999999999888643
No 186
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.57 E-value=2.7e-05 Score=62.77 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+..++|.|+|||||||+++.|+..++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999999886
No 187
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.57 E-value=2.5e-05 Score=62.83 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56678999999999999999999998764
No 188
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.56 E-value=3.4e-05 Score=59.00 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.-++|.||+|+||||+++.|++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 4578999999999999999998554
No 189
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.56 E-value=9.9e-05 Score=62.76 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+||||+++.||+.+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 35677999999999999999999998864
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.56 E-value=5.3e-05 Score=57.84 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..++|.|++||||||+++.++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999998863
No 191
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.55 E-value=4.4e-05 Score=59.84 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-+.|.|||||||||+++.+++.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567799999999999999999998653
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.55 E-value=5e-05 Score=61.23 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+.|.||+||||||+++.|+..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4467999999999999999999976664
No 193
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.55 E-value=4.3e-05 Score=61.76 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=26.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+..+.|.|++||||||+++.||+.++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 567999999999999999999998876443
No 194
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=5.4e-05 Score=64.31 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..++|.||+||||||++++++++++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 4456899999999999999999998865
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.54 E-value=5.3e-05 Score=58.85 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=24.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+.-|+|.|++||||||+++.|+..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999987643
No 196
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.54 E-value=2.7e-05 Score=61.50 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45677999999999999999999998764
No 197
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.53 E-value=2.6e-05 Score=62.18 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 46677999999999999999999998764
No 198
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.53 E-value=5.5e-05 Score=63.13 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+||||||+++.|++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34567899999999999999999998864
No 199
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.53 E-value=3e-05 Score=63.18 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 46677999999999999999999998765
No 200
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.52 E-value=2.9e-05 Score=62.98 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45677999999999999999999998765
No 201
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.52 E-value=0.00013 Score=60.60 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=42.0
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 10 IVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 10 ~~~~~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+...+....+.++|-+...+.|.+ +.. ..++|+||+|+|||++++.+++..+
T Consensus 4 f~~~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 4 FDTSPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp TCSSCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 345566677889999998888887 521 4799999999999999999998754
No 202
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.52 E-value=2.9e-05 Score=62.58 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46677999999999999999999998765
No 203
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.52 E-value=3.1e-05 Score=63.34 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++++.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56677999999999999999999998765
No 204
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.52 E-value=4e-05 Score=59.28 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.6
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.|.|.|++||||||+++.|++ ++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~ 28 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYV 28 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEE
Confidence 488999999999999999999 66533
No 205
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.51 E-value=6.2e-05 Score=60.26 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=25.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
++.-+.|.||+||||||+++.|++.++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 44568899999999999999999988754
No 206
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=3.1e-05 Score=62.13 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45677999999999999999999998765
No 207
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.51 E-value=4.6e-05 Score=59.61 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.4
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|.|+|||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999998876444
No 208
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.51 E-value=3.9e-05 Score=61.62 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=24.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+ .-+.|.||+|||||||+++|++.+.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45 77899999999999999999998764
No 209
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=6.2e-05 Score=58.22 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=22.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..+.|.||+|+||||+++.|++.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4588999999999999999999884
No 210
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.50 E-value=3.1e-05 Score=65.59 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++||++..+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 45677999999999999999999998765
No 211
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.49 E-value=4.9e-05 Score=60.05 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.3
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.|+|.|+|||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999998876444
No 212
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.49 E-value=3.2e-05 Score=62.52 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++..+.|.||+|+|||||+++|++.+...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 456779999999999999999999988654
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.48 E-value=0.00013 Score=61.31 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+||||+++.||+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35677999999999999999999998764
No 214
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.48 E-value=3.7e-05 Score=62.69 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 56677999999999999999999998764
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.48 E-value=7.1e-05 Score=58.44 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++..++|.|++||||||+++.+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999999887
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.48 E-value=6.8e-05 Score=62.34 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.9
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+.|.||+||||||+++.||+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4567999999999999999999998865
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.48 E-value=6.2e-05 Score=59.74 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.++.-+.|.||+|+||||++++++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4667899999999999999999994
No 218
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.47 E-value=3.9e-05 Score=62.34 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..+.|.||+|||||||+++|++.+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5667899999999999999999999875
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.47 E-value=4.2e-05 Score=59.30 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.2
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
.+.|.||+||||||+++.+++ ++..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 578999999999999999998 66533
No 220
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.47 E-value=3.4e-05 Score=63.39 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=25.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45677999999999999999999998765
No 221
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.47 E-value=4.4e-05 Score=65.24 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|+++..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 45677999999999999999999998765
No 222
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.46 E-value=6.2e-05 Score=57.61 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.7
Q ss_pred eEEEecCCCCcHHHHHHHHHHHh---chhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVY---NQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~---~~~~~ 81 (217)
-|.|.|++||||||+++.++..+ +..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37899999999999999999988 65554
No 223
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.46 E-value=4.2e-05 Score=60.57 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=17.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHH-HHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVA-IVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia-~~~~ 77 (217)
.++.-+.|.||+||||||+++.|+ +.++
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345678999999999999999999 8774
No 224
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=4.1e-05 Score=60.19 Aligned_cols=27 Identities=41% Similarity=0.474 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++.-+.|.||+|||||||+++|++. .+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 4567999999999999999999998 54
No 225
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.44 E-value=0.00019 Score=62.74 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=34.3
Q ss_pred ccccCCCCCCCccc-chHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 9 IIVERPDVQWSDIA-NQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 9 ~~~~~~~~~~~dl~-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
...++.+.+|++|- ++..+...+...+.. ....++|.|++|||||+++.+++..+.
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45677888898874 444444444444321 123799999999999999999998663
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.44 E-value=8.3e-05 Score=59.48 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+.|.|||||||||+++.|+..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56999999999999999999998775
No 227
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.44 E-value=6.8e-05 Score=57.16 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=23.7
Q ss_pred eEEEecCCCCcHHHHHHHHHHHh---chhhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVY---NQVHC 81 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~---~~~~~ 81 (217)
-|.|.|++||||||+++.++..+ +..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37899999999999999999987 54444
No 228
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.44 E-value=4.3e-05 Score=61.82 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|+|||||+++|++.+.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45677999999999999999999998754
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.44 E-value=8.7e-05 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..++|+||||+||||+++.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 355779999999999999999999765
No 230
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.44 E-value=7.9e-05 Score=57.42 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=23.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..|.|.|++||||||+++.++..++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 46799999999999999999999883
No 231
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.43 E-value=7.9e-05 Score=63.64 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..++|+||+||||||+++++++++..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 45567999999999999999999998865
No 232
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.42 E-value=3.3e-05 Score=65.54 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++||++..+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45677999999999999999999998765
No 233
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.42 E-value=7.1e-05 Score=61.01 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.-+.|.||+|||||||+++|++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999973
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.42 E-value=6.2e-05 Score=58.47 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
++.-+.|.|++||||||+++.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999987
No 235
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.42 E-value=5.3e-05 Score=65.11 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=25.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-+.|.||+|||||||+++|++++.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5667899999999999999999999875
No 236
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=0.00026 Score=58.40 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+.-|.|.||+||||||+++.|++.++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3467899999999999999999998874
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.40 E-value=0.00012 Score=64.64 Aligned_cols=29 Identities=38% Similarity=0.395 Sum_probs=25.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-++|.||+||||||+++.|++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 34567899999999999999999998764
No 238
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=0.0001 Score=57.18 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-+.|.|++||||||+++.|++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346689999999999999999999874
No 239
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.40 E-value=7.5e-05 Score=60.24 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.++.-+.|.||+|||||||+++|++.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46677999999999999999999997
No 240
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.38 E-value=0.00026 Score=63.90 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+||||||+++.+++++.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56778999999999999999999998875
No 241
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.38 E-value=9e-05 Score=57.20 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.5
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+.|.|++||||||+++.++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 68899999999999999999988753
No 242
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.38 E-value=0.0016 Score=55.79 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 18 WSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 18 ~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
++.++|.....+.+.+.+.. .......++|+|++||||+++|+++...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 34566666655555555432 1223456899999999999999999864
No 243
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.37 E-value=5.6e-05 Score=62.45 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-+.|.||+|||||||+++|++.+.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56677999999999999999999998764
No 244
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.36 E-value=0.00012 Score=59.24 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.-|+|.|+|||||||+++.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999873
No 245
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.35 E-value=0.00016 Score=65.40 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+||||||+++.|++++.+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 56778999999999999999999998865
No 246
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.35 E-value=0.00011 Score=62.47 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=24.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+..+.|.||+|||||||+++|++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4679999999999999999999988653
No 247
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.34 E-value=7.5e-05 Score=63.48 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..++|.||+||||||++++|+++++.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45678999999999999999999998875
No 248
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.34 E-value=9.7e-05 Score=61.86 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..++|+||+||||||+++.+|..++..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~ii 34 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELI 34 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 56899999999999999999999886444
No 249
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.34 E-value=0.00013 Score=60.54 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-+.|.||+||||||+++.|++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346688999999999999999999886
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.32 E-value=0.00023 Score=59.23 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++-++|+||+|+||||++..+|..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34577999999999999999999998753
No 251
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=0.00018 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.++.-++|+||||+||||+++.++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999999984
No 252
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.31 E-value=0.00012 Score=56.77 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-|.|+|++||||||+++.++..++..++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 45889999999999999999998776443
No 253
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.30 E-value=0.00015 Score=56.34 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.++.-++|+||||+||||+++.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999998
No 254
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00013 Score=56.04 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=23.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+..|.|.|++||||||+++.|+.. +..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~ 35 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPV 35 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEE
Confidence 356899999999999999999997 5433
No 255
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.29 E-value=8.8e-05 Score=64.26 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.7
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+.-|+|+|+|||||||+++.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 356889999999999999999998876554
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.28 E-value=8.2e-05 Score=56.63 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+.+.|.|++||||||+++.|++++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468899999999999999999998754
No 257
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.28 E-value=0.00017 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.-.+|+||+||||||++++|+..+..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36789999999999999999987753
No 258
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.28 E-value=0.00021 Score=64.38 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+||||||+++++++++.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 56677999999999999999999998876
No 259
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.27 E-value=0.00015 Score=56.63 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=23.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-|.|.|++||||||+++.|+. ++..++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 5689999999999999999998 665443
No 260
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.27 E-value=0.00018 Score=57.81 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.-|.|.|++||||||+++.|+..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 568999999999999999999988754
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.27 E-value=6.5e-05 Score=58.34 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.5
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-|.|.|++||||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998863
No 262
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.26 E-value=0.00018 Score=57.18 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+.|.|++||||||+++.|++.++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456899999999999999999998775
No 263
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.26 E-value=0.0002 Score=56.87 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+.-|+|.||+||||||+++.|+..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4466889999999999999999999873
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.25 E-value=0.00018 Score=59.00 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++.-++|.||||+||||+++.++..+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45677999999999999999999997753
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.24 E-value=0.00036 Score=57.68 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 25 VKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.+.+.+.+.+...+..... .....++..++|.||+|+||||++..+|..+..
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34455555545433322211 111234577999999999999999999997753
No 266
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.24 E-value=0.00021 Score=59.87 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.-+.|.||+||||||+++.|++.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999999886
No 267
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.23 E-value=9.7e-05 Score=60.12 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+..+.|.||+|||||||+++|++.+ +
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p 55 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-P 55 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-C
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 6779999999999999999999987 5
No 268
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.23 E-value=7.8e-05 Score=62.65 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..++|.||+|+||||++++|++++..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4578999999999999999999998865
No 269
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.22 E-value=0.00018 Score=58.72 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+.|.||+|+|||||+++|++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999997754
No 270
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.22 E-value=0.00033 Score=73.47 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=34.0
Q ss_pred hccccCCC-----CCCcHHHHhhccccccccCCCHHHHHHHHHHHHhh
Q psy15622 80 HCGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 122 (217)
Q Consensus 80 ~~~~t~~~-----~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~ 122 (217)
++||+|.| ..++++++|||.. +.++.|+.+....|+..++..
T Consensus 1425 ~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1425 FVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCHHHHHHHHHHHHHH
Confidence 34777776 4689999999964 899999999999998877653
No 271
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.21 E-value=0.0002 Score=63.73 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+..++|.||+||||||+++++++++..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999998865
No 272
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00017 Score=63.24 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=25.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+|+|++++..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 45678999999999999999999998743
No 273
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.19 E-value=0.0002 Score=58.69 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh-ch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY-NQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~-~~ 78 (217)
..|+|.|+|||||||+++.++..+ +.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~ 29 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 568999999999999999999854 44
No 274
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.17 E-value=0.00018 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
+..++|+||||||||+++.++|..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 355799999999999999999976
No 275
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.14 E-value=0.0005 Score=67.66 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.+++.+.|+||+||||||++++|.+++.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccc
Confidence 567789999999999999999999998763
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.13 E-value=0.00028 Score=57.46 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-++|+||+|+||||+++.++..+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3557799999999999999999998553
No 277
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.11 E-value=0.00027 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
..+.|.|++||||||+++.++..++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~ 31 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIY 31 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 4689999999999999999999887533
No 278
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.10 E-value=0.00021 Score=55.79 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++++|.||+|+|||+++..++....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 357899999999999999999998554
No 279
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.10 E-value=0.00028 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.+.+++|.|+||+||||+|.++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.10 E-value=0.00057 Score=59.60 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 25 VKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.+++.+.+.+...+..+........+|..++++|++|+||||++..+|..+.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 44455555554433332111111112357799999999999999999997654
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.09 E-value=0.0002 Score=60.21 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-|+|.||+|||||+|+..||+.++..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiI 69 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVI 69 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEE
Confidence 56899999999999999999998885433
No 282
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.07 E-value=0.00031 Score=58.45 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=25.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
+.-++|.||+|||||+|+..+|..++..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 356889999999999999999998876433
No 283
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.00034 Score=59.12 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.-+.|+||||||||||++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455679999999999999999999987
No 284
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.05 E-value=0.00023 Score=63.79 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++..+.|.|++||||||++++|++.++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 456799999999999999999999986
No 285
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.05 E-value=0.00027 Score=59.53 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=24.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.-|+|.||+||||||+++.||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCc
Confidence 468899999999999999999988753
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.02 E-value=0.00037 Score=57.09 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-|.|+|++||||||+++.++ .++..++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~i 103 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYII 103 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 458999999999999999999 4565443
No 287
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.02 E-value=0.00027 Score=63.23 Aligned_cols=29 Identities=38% Similarity=0.329 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|||||||+++|++.+.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46678999999999999999999998754
No 288
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.01 E-value=0.00065 Score=59.11 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++.-+++.||+|+||||++..+|..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999997664
No 289
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.01 E-value=0.00032 Score=58.47 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=23.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.-++|.||+|||||+++..+|..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 46889999999999999999998875
No 290
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.99 E-value=0.00026 Score=63.88 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=26.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+||||||+++.+++++.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 56678999999999999999999998875
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.00049 Score=54.29 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..++|+||||+||||++..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999998887644
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00051 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..+.|.|++|+||||+++.++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4688999999999999999998764
No 293
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.95 E-value=0.00045 Score=60.23 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+.|.||+|||||||++.|++....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4567999999999999999999998865
No 294
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.95 E-value=0.00012 Score=58.32 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
-+.|.||+||||||++++|++.+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 3578999999999999999998864
No 295
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.94 E-value=0.00052 Score=59.11 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.0
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.-++|.||+|+|||+++..||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC
Confidence 456889999999999999999998775
No 296
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.93 E-value=0.013 Score=49.69 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=32.6
Q ss_pred CcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.+++|.......+.+.+.. .......++++|++||||+++|+++...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~----------~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPK----------IAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHH----------HHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhh----------hhccchhheEEeCCCchHHHHHHHHHHh
Confidence 4567766666655555432 1122356999999999999999999764
No 297
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.91 E-value=0.00078 Score=56.28 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.++++||+|+||||++..+|..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35577999999999999999999998754
No 298
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.90 E-value=0.0014 Score=58.71 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 15 DVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 15 ~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
+.....++|-+...+.|.+.+... ....+.++|+||+|+|||+||..++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 344567999999999998877421 11236799999999999999998864
No 299
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.90 E-value=0.00055 Score=58.99 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.++.-++|+||||||||||++.++-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 5566799999999999999997763
No 300
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.90 E-value=0.00051 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEecCCCCcHHHHHHHHHHHh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++|.|++|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 301
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.89 E-value=0.0006 Score=60.10 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..+.|.||+|||||||+++|++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 67899999999999999999998765
No 302
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.89 E-value=0.00058 Score=57.91 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch-----hhccccCCCCCCcHHHHhhccc----cccccCCCHHHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ-----VHCGASNFPWNIDDAFLRRLEK----RIYVPLPSSSGRQELLRLIL 120 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~-----~~~~~t~~~~~l~~~l~~rf~~----~i~~~~p~~~~r~~il~~~l 120 (217)
.++.-++|+||||||||||+..++..+.. .++.+ ....++...+|+.. .......+.++...+++.++
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~---E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA---EHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES---SCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec---ccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 44567899999999999999999987643 12222 22334444445532 22233345556666666665
Q ss_pred hh
Q psy15622 121 RQ 122 (217)
Q Consensus 121 ~~ 122 (217)
+.
T Consensus 136 ~~ 137 (356)
T 3hr8_A 136 RS 137 (356)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 303
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.88 E-value=0.00032 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
++.-+.|.|++||||||+++.|++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4566899999999999999999987
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.88 E-value=0.00055 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.++|.|++|+|||||++.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999985
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.87 E-value=0.00076 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4688999999999999999998764
No 306
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.84 E-value=0.0006 Score=54.34 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
..+-|.|||||||||.++.|+..++...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 46889999999999999999999886554
No 307
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.00047 Score=62.55 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++.-+.|.||+|+|||||+++|++.+.+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 456779999999999999999999987653
No 308
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.83 E-value=0.00078 Score=56.64 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-+.|.||||+||||+++++++.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3456789999999999999999998764
No 309
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.83 E-value=0.00027 Score=58.24 Aligned_cols=25 Identities=12% Similarity=0.384 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.-|.|.||+||||||+++.++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999776
No 310
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.82 E-value=0.00069 Score=57.27 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=25.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+..+.|.||+|+|||||++.|++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4577999999999999999999998764
No 311
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.81 E-value=0.001 Score=65.47 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.|++.+.|+||+||||||++++|.+++.+.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 677889999999999999999999998763
No 312
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0016 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
...+++.|++|+||||+++++.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999874
No 313
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.80 E-value=0.001 Score=52.70 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=29.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch----hhccccCCCC
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ----VHCGASNFPW 88 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~----~~~~~t~~~~ 88 (217)
.+.-|.|.|++||||||+++.++..+.. .++.+|..|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 3466888999999999999999998765 4444366665
No 314
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.78 E-value=0.00032 Score=63.53 Aligned_cols=29 Identities=38% Similarity=0.684 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+||||||+++++++++.+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 56678999999999999999999998876
No 315
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.00047 Score=61.66 Aligned_cols=30 Identities=27% Similarity=0.151 Sum_probs=25.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
.++.-+.|.||+|+|||||+++|++.+.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 445668999999999999999999987643
No 316
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.75 E-value=0.0009 Score=59.59 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=24.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~ 80 (217)
+.-|+++|.||+||||+++.|+..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 35688999999999999999999886543
No 317
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00044 Score=61.85 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++.-+.|.||+|||||||+++|++.+.+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5567899999999999999999997765
No 318
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.75 E-value=0.00054 Score=61.29 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+.|.||+|||||||+++|++.+.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5677999999999999999999997754
No 319
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.74 E-value=0.00051 Score=62.28 Aligned_cols=29 Identities=41% Similarity=0.338 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||+++|++.+.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 45677999999999999999999998764
No 320
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.74 E-value=0.00086 Score=53.26 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..|.|.|++||||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999884
No 321
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.72 E-value=0.00036 Score=63.02 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=26.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|.||+||||||+++++++++.+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 56677999999999999999999998876
No 322
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.71 E-value=0.0029 Score=57.63 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHH
Q psy15622 17 QWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAV 72 (217)
Q Consensus 17 ~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~ai 72 (217)
.|-+=...+.+++.+...+.. ..-.||.||||||||+++-.+
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHH
Confidence 333334567777777765531 135789999999999754443
No 323
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.70 E-value=0.00084 Score=52.20 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=25.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-|.|.|++||||||+++.+|..++..++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 35889999999999999999999887544
No 324
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.69 E-value=0.003 Score=52.45 Aligned_cols=58 Identities=22% Similarity=0.098 Sum_probs=36.9
Q ss_pred CcccchHHHHHHHHHHHHh--------hcCChhhhhhhc--CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 19 SDIANQVKAKKLLQEAVIL--------PLEKPSYFQHIR--KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 19 ~dl~g~~~~~~~l~~~~~~--------~~~~~~~~~~~~--~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+++....++...+.+.+.. +...+.+-...+ .++.-++|.|+||+|||+++..+|...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 25 DDDGSIDEALVTVYEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp -CCCCCHHHHHHHHHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4455556665555555532 222333333322 566779999999999999999998654
No 325
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.69 E-value=0.0013 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.-.+|+||+|+|||+++.||.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998755
No 326
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.69 E-value=0.00082 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
++..++|.|++|+|||||++++++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999999874
No 327
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.68 E-value=0.00056 Score=56.52 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=23.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.-+.|.||||+|||||+++|++...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 456889999999999999999987754
No 328
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.68 E-value=0.00096 Score=59.37 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCCceEEEecCCCCcHHHHHHH--HHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKA--VAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~a--ia~~~~ 77 (217)
.++..++|.||+|||||||++. +++...
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999 567665
No 329
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.68 E-value=0.00063 Score=61.70 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++.-+.|.||+|+|||||+++|++.+.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4567899999999999999999997754
No 330
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.68 E-value=0.0012 Score=51.91 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=28.0
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchh--hccccCCCC
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQV--HCGASNFPW 88 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~--~~~~t~~~~ 88 (217)
+.-|.|.|++|+||||+++.++..+... -+.+|..|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 4568889999999999999999988642 223555554
No 331
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.68 E-value=0.00065 Score=58.93 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCce--EEEecCCCCcHHHHHHHHHHH
Q psy15622 51 PWKG--VLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 51 ~~~~--vll~Gp~G~GKTtla~aia~~ 75 (217)
++.. +.|.||+|+|||||+++|++.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4555 889999999999999999986
No 332
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.66 E-value=0.0049 Score=53.73 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=69.9
Q ss_pred CCCCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc-cCCCHHhHHHHHHHHHHHHHHHHHhC
Q psy15622 87 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQL-EGYSASDIVVVCRDAAFMAMRAAIRG 164 (217)
Q Consensus 87 ~~~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~-~g~s~~di~~l~~~a~~~a~~~~~~~ 164 (217)
+..+++.+++||.. +.|+.++.++..++++..+...+.. ++..+..++..+ .| +++....+++.|...|..+.
T Consensus 347 ~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~--- 421 (456)
T 2c9o_A 347 PHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING--- 421 (456)
T ss_dssp ETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT---
T ss_pred cccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC---
Confidence 77899999999987 5999999999999999887654432 333466677777 55 78888888888877665443
Q ss_pred CCCcccccccccccCCCccHHHHHHHHHhcC
Q psy15622 165 KSVPQIQAIPMAQLKRPVTKADFEMAIAKCR 195 (217)
Q Consensus 165 ~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 195 (217)
...||.+|+..|+.-+.
T Consensus 422 --------------~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 422 --------------KDSIEKEHVEEISELFY 438 (456)
T ss_dssp --------------CSSBCHHHHHHHHHHSC
T ss_pred --------------CCccCHHHHHHHHHHhc
Confidence 45699999999998864
No 333
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.66 E-value=0.0011 Score=55.97 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch----hhccccCCCCCCcHHHHhhcc----ccccccCCCHHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----VHCGASNFPWNIDDAFLRRLE----KRIYVPLPSSSGRQELLRLILR 121 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~----~~~~~t~~~~~l~~~l~~rf~----~~i~~~~p~~~~r~~il~~~l~ 121 (217)
.++..++|+||||+||||++..++..... ..+.++. ...++...+++. ....+...+.++..++++.+..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E--~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE--HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS--CCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC--CCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 35567999999999999999999875432 1222222 234444444442 2222333455666666666655
Q ss_pred h
Q psy15622 122 Q 122 (217)
Q Consensus 122 ~ 122 (217)
.
T Consensus 137 ~ 137 (349)
T 2zr9_A 137 S 137 (349)
T ss_dssp T
T ss_pred c
Confidence 4
No 334
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0014 Score=51.73 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.++.-++|+|+||+|||+++..+|.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4566799999999999999988764
No 335
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.65 E-value=0.0011 Score=58.94 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
..|.|.|.+||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999984
No 336
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.65 E-value=0.0023 Score=52.78 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+++.+.++|++|+||||++..+|..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998754
No 337
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.65 E-value=0.0016 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.++.-++|+||||+|||+++..+|..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44556899999999999999999985
No 338
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.65 E-value=0.0013 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.-+.|.||+|+|||||+++|++....
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 46889999999999999999996543
No 339
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.65 E-value=0.0012 Score=52.71 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=28.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh---ccccCCCC
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH---CGASNFPW 88 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~---~~~t~~~~ 88 (217)
+.-|.|.|++|+||||+++.++..+.... +..|..|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 46689999999999999999999886532 33455554
No 340
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.64 E-value=0.0014 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=19.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.-++++||+|+||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999986666543
No 341
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.62 E-value=0.00038 Score=53.62 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=22.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++..+.|.|++|+|||||++++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344669999999999999999998644
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.59 E-value=0.0046 Score=52.00 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-++|.|+||+|||+++..+|..+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6677899999999999999999987543
No 343
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.59 E-value=0.0024 Score=55.37 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++..+++.|++|+||||++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4577889999999999999999997754
No 344
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.58 E-value=0.0015 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.-++|+||||+|||+++..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455679999999999999999999754
No 345
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.58 E-value=0.0013 Score=55.86 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++..+.|.||||+|||||+++|++...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 456799999999999999999998776
No 346
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.58 E-value=0.0011 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.094 Sum_probs=21.1
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+.-|.|.||+|+||||+++.++..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4568889999999999999999988643
No 347
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.57 E-value=0.0063 Score=50.75 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCcHHHHhhccccccccCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHccCCCHHhHHHHHH
Q psy15622 89 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGYSASDIVVVCR 151 (217)
Q Consensus 89 ~l~~~l~~rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 151 (217)
.+.+++.+|+ .++.+..++..+..+.++..++..++. +...+..+++.+ ++|+..+..
T Consensus 125 k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~----~gdl~~~~~ 183 (343)
T 1jr3_D 125 AWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCY----EGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSS----TTCHHHHHH
T ss_pred HHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----chHHHHHHH
Confidence 3455666666 466777778888888888888777653 222344455443 445544443
No 348
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.56 E-value=0.001 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~ 75 (217)
.++|.|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 349
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.55 E-value=0.0015 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~ 75 (217)
.+++.|++|+||||+++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 350
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.54 E-value=0.0018 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=24.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.-|.|.|++|+||||.++.++..++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 466899999999999999999999985
No 351
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.53 E-value=0.0013 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..++|.|++|+|||||++++++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999986
No 352
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.52 E-value=0.002 Score=63.30 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=26.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
++++.+.|+||+||||||++++|++++.+
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 56778999999999999999999998876
No 353
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.52 E-value=0.00059 Score=55.02 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.-|+|.|++||||||+++.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346689999999999999999999883
No 354
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.52 E-value=0.0015 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.+++.|++|+|||||++++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999986
No 355
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.51 E-value=0.0023 Score=55.68 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..++++|++|+||||++..+|..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 356
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.49 E-value=0.0018 Score=56.82 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQV 79 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~ 79 (217)
+..|+++|.||+||||+++.++..++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3568999999999999999999987643
No 357
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.49 E-value=0.0016 Score=53.91 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+..+.|.||||+|||||+++|+ ....
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 4568999999999999999999 6654
No 358
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.48 E-value=0.0016 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~ 75 (217)
.+++.|++|+||||+++++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 359
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.47 E-value=0.0019 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.++.-++|+||||+|||+++..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566899999999999999999875
No 360
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0012 Score=59.89 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=23.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.-+.|.||+|+|||||+++|++.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34899999999999999999998764
No 361
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.47 E-value=0.0017 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999876
No 362
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.0014 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..++|.|++|+|||||++++++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999987
No 363
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.45 E-value=0.0018 Score=57.65 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..++|.||+|||||||++.+++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567799999999999999999998764
No 364
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.44 E-value=0.0021 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..++|+|++|+|||||++++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 569999999999999999998743
No 365
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.43 E-value=0.0019 Score=58.23 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
..++|.|||||||||++.+++..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999987553
No 366
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.43 E-value=0.0018 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
..|++.|++|+|||||++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999863
No 367
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.43 E-value=0.0019 Score=58.14 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..|+|.|+|||||||++++|+..++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 35688999999999999999999876
No 368
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.42 E-value=0.0022 Score=49.81 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+.-.+|+||+|+||||++.||.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35678999999999999999987665
No 369
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.42 E-value=0.0019 Score=47.41 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999876
No 370
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.41 E-value=0.0019 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.+++.|++|+||||+++++.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999763
No 371
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.40 E-value=0.002 Score=55.74 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+.-.+|+||+|+||||++++|+..++.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 466899999999999999999987654
No 372
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.40 E-value=0.00047 Score=57.33 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+++.+.|.||||+|||||+++|++....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccc
Confidence 4577999999999999999999886654
No 373
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.40 E-value=0.0021 Score=50.43 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=28.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhchhh---ccccCCCC
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQVH---CGASNFPW 88 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~~~---~~~t~~~~ 88 (217)
+.-|.|.|++|+||||.++.++..+.... +..|..|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 35688999999999999999999876432 24455555
No 374
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.39 E-value=0.0018 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.-.+++|+||||||++|.+++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999886544
No 375
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.38 E-value=0.002 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|++.|++|+|||||++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998863
No 376
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.38 E-value=0.002 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 377
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.37 E-value=0.0034 Score=54.75 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++.-++|.|+||+|||+++..+|..+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667799999999999999999998553
No 378
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.37 E-value=0.0019 Score=53.71 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.+.+++|.|+||+||||++.++..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 368899999999999999999987
No 379
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.37 E-value=0.0021 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++.+.+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999999876
No 380
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.37 E-value=0.002 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 381
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.35 E-value=0.0024 Score=54.12 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=40.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch----hhccccCCCCCCcHHHHhhccc----cccccCCCHHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----VHCGASNFPWNIDDAFLRRLEK----RIYVPLPSSSGRQELLRLILR 121 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~----~~~~~t~~~~~l~~~l~~rf~~----~i~~~~p~~~~r~~il~~~l~ 121 (217)
.++..++|+||||+|||++|..++..... .++.++. ...++...+++.. ...+...+.++..++++.+.+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E--~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE--HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS--CCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC--CCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34567999999999999999999875432 1112222 2234444444321 122233345556666666654
Q ss_pred h
Q psy15622 122 Q 122 (217)
Q Consensus 122 ~ 122 (217)
.
T Consensus 139 ~ 139 (356)
T 1u94_A 139 S 139 (356)
T ss_dssp H
T ss_pred c
Confidence 4
No 382
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.34 E-value=0.002 Score=51.04 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=25.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
.-|.|.|++||||||+++.+|..++..++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 45888999999999999999998887443
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.34 E-value=0.0042 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..++|.|++|+||||++..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999865
No 384
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.33 E-value=0.0021 Score=47.48 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++++.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4699999999999999999875
No 385
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.33 E-value=0.0023 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.+++.|++|+|||||++++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999986
No 386
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.32 E-value=0.0026 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~ 74 (217)
...|++.|++|+|||||++++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999975
No 387
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.32 E-value=0.0027 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
...+.|.|+||+|||||++++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999865
No 388
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.31 E-value=0.0014 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.-++|.|++|+||||+++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999864
No 389
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0019 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.30 E-value=0.0029 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred CceEEEecCCCCcHHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~ 74 (217)
...|++.|++|+|||+|++++.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999975
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.30 E-value=0.0024 Score=46.82 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999986
No 392
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.29 E-value=0.0024 Score=58.02 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.9
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+..|+|.|.|||||||++++|+..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987
No 393
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.29 E-value=0.0036 Score=51.65 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+..+++.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788899999999999999998775
No 394
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.28 E-value=0.003 Score=49.96 Aligned_cols=27 Identities=22% Similarity=-0.048 Sum_probs=21.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.-++++||+|+||||++..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345668889999999999998888755
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.28 E-value=0.0024 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||||++++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 396
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.28 E-value=0.0028 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.-.+|+||+|+||||+..+|+..+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999998653
No 397
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.26 E-value=0.0028 Score=54.35 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+..++|.||+|||||+|++.|++..+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 457799999999999999999998763
No 398
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.26 E-value=0.0022 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
..+.+++|.|+||+||||+|..+..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3468899999999999999988865
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.25 E-value=0.0026 Score=46.52 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.2
Q ss_pred eEEEecCCCCcHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~ 74 (217)
.+++.|++|+|||+|++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 400
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.25 E-value=0.0025 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
..|++.|++|+|||||++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.25 E-value=0.0024 Score=46.92 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred eEEEecCCCCcHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~ 74 (217)
.|++.|++|+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 402
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.24 E-value=0.0062 Score=64.17 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=23.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+..+.||+|||||.+++.+|+.++.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr 630 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGR 630 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCC
Confidence 56789999999999999999997765
No 403
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.23 E-value=0.0025 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++++.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3599999999999999999975
No 404
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.23 E-value=0.0027 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999986
No 405
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.22 E-value=0.0011 Score=56.94 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++ -+.|+||+|+||||++++|+..++
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 344 789999999999999999988775
No 406
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.21 E-value=0.0028 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|++.|++|+|||||++++++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999863
No 407
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.20 E-value=0.0026 Score=60.51 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.++..+.|.||+|||||||+++|++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556689999999999999999995
No 408
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.20 E-value=0.0028 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|++.|++|+|||||++++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 409
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.20 E-value=0.0034 Score=47.36 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|++.|++|+|||||++++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999874
No 410
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3599999999999999999986
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.19 E-value=0.0024 Score=46.82 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=19.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.+++.|++|+|||+|++++.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999998864
No 412
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.19 E-value=0.0025 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.+++.|++|+|||+|++++.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999975
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.19 E-value=0.0029 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|++.|++|+|||||++++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999999986
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.18 E-value=0.0028 Score=64.30 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+++.++|+||||||||+||.+++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4668899999999999999999987654
No 415
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.18 E-value=0.0074 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
...++|.|.+|+||||++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998764
No 416
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.18 E-value=0.003 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999986
No 417
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0025 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
..|.|.|++|+|||||++++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999874
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.17 E-value=0.0027 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy15622 55 VLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 55 vll~Gp~G~GKTtla~aia~~ 75 (217)
++++|++|||||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999965
No 419
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.16 E-value=0.0029 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.+++.|++|+|||+|++.+.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 420
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.15 E-value=0.0029 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999976
No 421
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.12 E-value=0.002 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEecCCCCcHHHHHHHHHHHh
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.|.|.||+|+|||||++++++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998754
No 422
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.12 E-value=0.0052 Score=53.44 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.-++|.|+||+|||+++..+|...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566779999999999999999998754
No 423
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.12 E-value=0.0022 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|+|.||+|+|||||++.|++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998753
No 424
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0029 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 425
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.12 E-value=0.0013 Score=62.67 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.++..+.|.||+|+|||||++.|++.+.+
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45667999999999999999999997654
No 426
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.11 E-value=0.007 Score=58.30 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=39.1
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 14 ~~~~~~dl~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.+.....++|.++..+.|.+.+... ....+-+.|+|+.|+||||||+.++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~ 169 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVR 169 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3445567999999999999887421 11236689999999999999998875
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0033 Score=46.67 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999876
No 428
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.10 E-value=0.0034 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..+++.|++|+|||+|++.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999986
No 429
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.09 E-value=0.0035 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.1
Q ss_pred eEEEecCCCCcHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~ 74 (217)
.|+|.|++|+|||+|++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999988775
No 430
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.08 E-value=0.0017 Score=63.75 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=26.4
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
.+++.+.|+||+|||||||+++|++++.+
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56778999999999999999999998875
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.08 E-value=0.0035 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 432
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.07 E-value=0.0032 Score=47.56 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..+++.|++|+|||||++++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999999975
No 433
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.07 E-value=0.0035 Score=58.56 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+++.++|+||+|+||||++|++++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44668999999999999999999853
No 434
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.07 E-value=0.0035 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3599999999999999999986
No 435
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.06 E-value=0.0036 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++.+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 436
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.06 E-value=0.01 Score=52.84 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHhhcCChhhhhhhcCCCceEEEecCCCCcHHHHHHHHHH
Q psy15622 22 ANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 22 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
+|-+..++.|.+.+... .....+.+.|+|+.|+||||||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999888877421 011236789999999999999999996
No 437
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.05 E-value=0.0036 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
-.|+|.|++|+|||+|++.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4599999999999999998887554
No 438
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.04 E-value=0.0037 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||||++++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999986
No 439
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.04 E-value=0.0037 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||||++++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999976
No 440
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.03 E-value=0.0066 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
++..|+|+|++|+||||++..||..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999999997653
No 441
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.03 E-value=0.0038 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.3
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
++.++|+||+|+||||++|.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568999999999999999999865
No 442
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.03 E-value=0.0027 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
..|++.|++|+|||||++++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998764
No 443
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.02 E-value=0.0043 Score=47.31 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5699999999999999999976
No 444
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.02 E-value=0.0043 Score=52.76 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhch----hhccccCCCCCCcHHHHhhccc----cccccCCCHHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ----VHCGASNFPWNIDDAFLRRLEK----RIYVPLPSSSGRQELLRLILR 121 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~~----~~~~~t~~~~~l~~~l~~rf~~----~i~~~~p~~~~r~~il~~~l~ 121 (217)
.++..++|+||||+|||+++..++..... .++.++. ...++...+++.. .+.....+.++...+++.+.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E--~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE--HALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS--CCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC--CChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34567999999999999999999875421 2222222 2344444444421 222333455666666666665
Q ss_pred h
Q psy15622 122 Q 122 (217)
Q Consensus 122 ~ 122 (217)
.
T Consensus 150 ~ 150 (366)
T 1xp8_A 150 S 150 (366)
T ss_dssp T
T ss_pred c
Confidence 4
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0038 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++++.+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3599999999999999999976
No 446
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.01 E-value=0.0031 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||||+++|.+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 4699999999999999999986
No 447
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.01 E-value=0.015 Score=50.59 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
.++.-++|.|+||+|||+++..+|...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 566779999999999999999998754
No 448
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.01 E-value=0.0021 Score=58.30 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+.|.||+||||||++++|++.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 399999999999999999999763
No 449
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.00 E-value=0.0046 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.-.+|+||+|+||||++++|+..
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 36789999999999999999863
No 450
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.00 E-value=0.0046 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
-.+++.|++|+||||++-.+|..+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999987653
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.99 E-value=0.0041 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.+++.|++|+|||+|++++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999875
No 452
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.99 E-value=0.0041 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||||++++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 5699999999999999999986
No 453
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.99 E-value=0.0047 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.+..+.|.|++|+||||++++++..+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346688999999999999999998763
No 454
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0038 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|+|.|++|+|||+|++.+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35999999999999999999863
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.99 E-value=0.0033 Score=47.12 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.2
Q ss_pred eEEEecCCCCcHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~ 74 (217)
.|++.|++|+|||||++++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999876
No 456
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.98 E-value=0.0042 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++.+.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 3599999999999999998876
No 457
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.98 E-value=0.0042 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.7
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHhch
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~~~~~ 78 (217)
+..|+|+|++||||||+++.++..++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 356889999999999999999998763
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.98 E-value=0.0042 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||+|++++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999875
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.005 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.8
Q ss_pred CceEEEecCCCCcHHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~ 74 (217)
.-.|++.|++|+|||+|++.+.+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999986
No 460
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.97 E-value=0.0075 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=19.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..+++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999887776543
No 461
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.006 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCceEEEecCCCCcHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
..-.|++.|++|+|||+|++++.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999984
No 462
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.96 E-value=0.0041 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||+|++++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999984
No 463
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.95 E-value=0.0043 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.5
Q ss_pred eEEEecCCCCcHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~ 74 (217)
.|+|.|++|+|||+|++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 599999999999999999986
No 464
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.94 E-value=0.0044 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++.+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4599999999999999999986
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0044 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999986
No 466
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.92 E-value=0.0043 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||||++++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 4599999999999999999986
No 467
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.92 E-value=0.0045 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++.+.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.91 E-value=0.0043 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0056 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||||++++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5699999999999999999986
No 470
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.89 E-value=0.0034 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++.+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999986
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0047 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999999985
No 472
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.88 E-value=0.0047 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
+.+++.|||||||||++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999988887654
No 473
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.88 E-value=0.0039 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++.+.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 474
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.88 E-value=0.0046 Score=51.65 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=20.6
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
|+..++|+||||+|||||+..++...
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33368899999999999988776544
No 475
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.87 E-value=0.0034 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.7
Q ss_pred CCceEEEecCCCCcHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
....|++.|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998863
No 476
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.87 E-value=0.0066 Score=53.54 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
.++..++|.|+||+|||+++..+|....
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 5566799999999999999999987553
No 477
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0046 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||||++.+.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3599999999999999999876
No 478
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.86 E-value=0.0047 Score=48.41 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhchhhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVHC 81 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~~~~~ 81 (217)
-.|-|+|..||||||+++.++. ++..++
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vi 37 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLV 37 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 3689999999999999999998 666443
No 479
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.86 E-value=0.0047 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++.+.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999987
No 480
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.85 E-value=0.0052 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
..+++.|++|+|||+|++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999998753
No 481
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.85 E-value=0.0053 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCceEEEecCCCCcHHHHHHHHHH
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~ 74 (217)
+.-.+++.|++|+|||+|++++.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999875
No 482
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.85 E-value=0.006 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
.-.+|+||+|+|||+++.||...
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999998653
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.80 E-value=0.0068 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHhc
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~~ 77 (217)
+-|.|-|+.||||||.++.++..+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578899999999999999999874
No 484
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.78 E-value=0.005 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.2
Q ss_pred CceEEEecCCCCcHHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia~ 74 (217)
...+++.|++|+|||+|++++.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999864
No 485
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.78 E-value=0.0055 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|++.|++|+|||+|++.+.+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999999986
No 486
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.77 E-value=0.0056 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++.+.+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 487
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.75 E-value=0.0061 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.6
Q ss_pred CceEEEecCCCCcHHHHHHHHH
Q psy15622 52 WKGVLMVGPPGTGKTMLAKAVA 73 (217)
Q Consensus 52 ~~~vll~Gp~G~GKTtla~aia 73 (217)
++.+++.||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999999877654
No 488
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0056 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|++.|++|+|||+|++++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 489
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.75 E-value=0.0059 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
..|.|+|+||+||||++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999865
No 490
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.72 E-value=0.0072 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHh
Q psy15622 51 PWKGVLMVGPPGTGKTMLAKAVAIVY 76 (217)
Q Consensus 51 ~~~~vll~Gp~G~GKTtla~aia~~~ 76 (217)
...++++.||+|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998754
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.71 E-value=0.0033 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=9.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999875
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0061 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
-.|++.|++|+|||+|++.+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 493
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.67 E-value=0.0047 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|+||+|||||.+++.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4589999999999999999986
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.66 E-value=0.0063 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|++.|++|+|||+|++++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999986
No 495
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.66 E-value=0.0057 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
..|+|.|++|+|||+|++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 496
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.65 E-value=0.0059 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|+|.|++|+|||+|++.+.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999874
No 497
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.65 E-value=0.005 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~~ 75 (217)
..+.|.|+||+|||||++++.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999874
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.64 E-value=0.0044 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHH
Q psy15622 53 KGVLMVGPPGTGKTMLAKAVAI 74 (217)
Q Consensus 53 ~~vll~Gp~G~GKTtla~aia~ 74 (217)
-.|++.|++|+|||+|++.+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999985
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.64 E-value=0.0036 Score=57.26 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.2
Q ss_pred CCCceEEEecCCCCcHHHHHHHHH
Q psy15622 50 KPWKGVLMVGPPGTGKTMLAKAVA 73 (217)
Q Consensus 50 ~~~~~vll~Gp~G~GKTtla~aia 73 (217)
.++.-+.|.||+|||||||++++.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 355678999999999999998764
No 500
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.64 E-value=0.0054 Score=49.35 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.0
Q ss_pred eEEEecCCCCcHHHHHHHHHHH
Q psy15622 54 GVLMVGPPGTGKTMLAKAVAIV 75 (217)
Q Consensus 54 ~vll~Gp~G~GKTtla~aia~~ 75 (217)
.|+|.|++|||||||.+++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999863
Done!