RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15622
(217 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 94.1 bits (234), Expect = 3e-24
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
A+N P +D A LR R +++I + P GR+++LR+ R LA D+DL L++ +
Sbjct: 152 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTP 211
Query: 140 GYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIA 192
G+ +D+ + +AA +A R + +R +T D E A +
Sbjct: 212 GFVGADLENLLNEAALLAAR-----------------EGRRKITMKDLEEAAS 247
Score = 71.4 bits (175), Expect = 9e-16
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKA 71
E P V + D+A +AK+ L+E V + + + KGVL+VGPPG GKT LA+A
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 72 VA 73
VA
Sbjct: 62 VA 63
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 89.5 bits (222), Expect = 2e-22
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 19/114 (16%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
A+N P +D A LR R ++++ V LP GR+++L++ +R+V LA D+D +++
Sbjct: 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTP 214
Query: 140 GYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAK 193
G+S +D+ + +AA A R KR V+ +FE A K
Sbjct: 215 GFSGADLANLVNEAALFAAR-----------------GNKRVVSMVEFEKAKDK 251
Score = 66.4 bits (162), Expect = 7e-14
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 12 ERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKA 71
++ ++D+A +AK+ + E V E + + K KGVLMVGPPGTGKT+LAKA
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKA 64
Query: 72 VA 73
+A
Sbjct: 65 IA 66
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 67.7 bits (164), Expect = 2e-14
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI-RKPWKGVLMVGPPGTGKTMLAKA 71
V + D+ K ++E V LPL P+ F+ I KP +G+L+ GPPGTGKT++A+A
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 57
Score = 60.8 bits (146), Expect = 7e-12
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 79 VHCGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 136
+ A+N P +ID A R R ++ + + +P ++GR E+L++ + + LA D+DLE V++
Sbjct: 142 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 201
Query: 137 QLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAK 193
+ G+ +D+ +C +AA A+R + + VT DF A+++
Sbjct: 202 ETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 258
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 64.1 bits (155), Expect = 4e-13
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 82 GASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
GA+N P ID A LR RL++ IY+PLP R +L+ LR+ +A D+DLE ++
Sbjct: 151 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 210
Query: 140 GYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIAK 193
G+S +D+ +C+ A +A+R +I + + + V + D I +
Sbjct: 211 GFSGADLTEICQRACKLAIRESIE-SEIRRERERQTNPSAMEVEEDDPVPEIRR 263
Score = 63.7 bits (154), Expect = 8e-13
Identities = 30/60 (50%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 14 PDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHI-RKPWKGVLMVGPPGTGKTMLAKAV 72
P V W DI K+ LQE V P+E P F P KGVL GPPG GKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 53.3 bits (127), Expect = 3e-09
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRK--PWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78
I Q AK+ + A+ + + +R K +LM+GP G GKT +A+ +A + N
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 75
Query: 79 VHC 81
Sbjct: 76 PFI 78
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 50.8 bits (121), Expect = 2e-08
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 1 MKRLIKRDIIVERPDVQWSDIA----NQVKAKKLLQEAVILPLEKPSYFQ--HIRKPWKG 54
+ ++ + E V + Q L+ L P + R
Sbjct: 66 IVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGM 125
Query: 55 VLMVGPPGTGKTMLAKAVA 73
V++ G +GKT L A+
Sbjct: 126 VIVTGKGNSGKTPLVHALG 144
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 48.8 bits (115), Expect = 8e-08
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 1 MKRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGP 60
I II +W D ++L + +L R P VL+ GP
Sbjct: 3 YASYIMNGII------KWGD-----PVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGP 48
Query: 61 PGTGKTMLAKAVAIVYNQVHC 81
P +GKT LA +A N
Sbjct: 49 PHSGKTALAAKIAEESNFPFI 69
Score = 48.4 bits (114), Expect = 1e-07
Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 81 CGASNFPWNIDDAFLR-RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 139
G ++ + + + I+VP + ++LL L + D + ++ Q++
Sbjct: 147 IGTTSRKDVLQEMEMLNAFSTTIHVPNI--ATGEQLLE-ALELLGNFKDKERTTIAQQVK 203
Query: 140 GYSASDIVVVCRDAAFMAMRAAIRGK 165
G + M+++ +
Sbjct: 204 GKKVWIGIKKLLMLIEMSLQMDPEYR 229
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 44.9 bits (105), Expect = 3e-06
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAV 72
RP +S I Q K L + P GVL+ G GTGK+ +A+
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPG------IG------GVLVFGDRGTGKSTAVRAL 48
Query: 73 A 73
A
Sbjct: 49 A 49
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 44.3 bits (104), Expect = 4e-06
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 11 VERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAK 70
+W + LL + + + + + L GP +GKT LA
Sbjct: 115 GSADIEEWMAGVAWLH--CLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAA 172
Query: 71 AVA 73
A+
Sbjct: 173 ALL 175
Score = 29.6 bits (66), Expect = 0.25
Identities = 6/74 (8%), Positives = 16/74 (21%), Gaps = 5/74 (6%)
Query: 89 NIDDAFLR--RLEKRIYVPLPSSSGRQ-ELLRLILRQVDLASDLDLELVSDQLEGYSASD 145
R K+I E +L + + + L+ + ++
Sbjct: 265 EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII--QSGIALLLMLIWYRPVAE 322
Query: 146 IVVVCRDAAFMAMR 159
+
Sbjct: 323 FAQSIQSRIVEWKE 336
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 43.4 bits (101), Expect = 5e-06
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAV 72
RP + Q + K+ L+ + + +P + +L+ GPPG GKT LA +
Sbjct: 4 RPK-TLDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVI 55
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 42.8 bits (99), Expect = 1e-05
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 13 RPDVQWSDIANQVKAKKLLQEAVI-LPLEKPSYFQHIRK----PWKGVLMVGPPGTGKTM 67
P + + L+ + K + F+H K ++ ++ GPPG GKT
Sbjct: 9 AP-TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTT 67
Query: 68 LAKAVAIVYNQVHCGASNFPWNIDD 92
A VA +
Sbjct: 68 AAHLVAQELGYDILEQNASDVRSKT 92
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 41.9 bits (97), Expect = 2e-05
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 31 LQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVA 73
+ + LE+ + + L+ G PG+GKT L A+
Sbjct: 11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIF 53
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 42.1 bits (98), Expect = 2e-05
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 21 IANQVKAKKLLQEAVILPLEKPSYFQHIRKP--WKGVLMVGPPGTGKTMLAKAVAIVYNQ 78
I Q AK+ + A+ + + +R K +LM+GP G GKT +A+ +A
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA----- 70
Query: 79 VHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 117
+N P+ +A + + YV S ++L
Sbjct: 71 ---KLANAPFIKVEAT--KFTEVGYVGKEVDSIIRDLTD 104
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 40.0 bits (92), Expect = 8e-05
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 13 RPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAV 72
RP + Q KK L A+ + H+ L+ GPPG GKT LA +
Sbjct: 4 RPK-SLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGKTTLAHII 55
Query: 73 AIVYNQVHCGASNFP 87
A S
Sbjct: 56 ASELQTNIHVTSGPV 70
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 36.2 bits (82), Expect = 0.002
Identities = 16/140 (11%), Positives = 39/140 (27%), Gaps = 2/140 (1%)
Query: 55 VLMVGPPGTGKTMLAKAVAI-VYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 113
+ G TGK+ L +A+ + G D R+
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP 96
Query: 114 ELLRLILRQVDLASDLDLELVSDQLEGYSASDIV-VVCRDAAFMAMRAAIRGKSVPQIQA 172
+ + + + D + ++ D+ R G+ +
Sbjct: 97 DDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQ 156
Query: 173 IPMAQLKRPVTKADFEMAIA 192
+ +A+ R + + + +A
Sbjct: 157 MHLAKFMRALQRLADQFGVA 176
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.8 bits (81), Expect = 0.002
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVY 76
+ V + GPPG GKT L + V
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 35.7 bits (81), Expect = 0.002
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 4/126 (3%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 114
+L G GTGKT+L A F + A L R + +
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNL 88
Query: 115 LLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIP 174
L + + L+++ ++ + + + A+ + + Q
Sbjct: 89 LKIVCAYPESAGLEDHLQIIKSEINDFKPA----RIAIDSLSALARGVSNNAFRQFVIGV 144
Query: 175 MAQLKR 180
K+
Sbjct: 145 TGYAKQ 150
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 34.5 bits (78), Expect = 0.004
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWN 89
V+ VG PG GK+ + + VH
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW 51
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 34.7 bits (78), Expect = 0.005
Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 7/156 (4%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASN------FPWNIDDAFLRRLEKRIYVPLPS 108
+ G G+GKT LA +A++ R E L
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 98
Query: 109 SSGRQELLRLILRQVDLASDLDLELVSDQLEGYSAS-DIVVVCRDAAFMAMRAAIRGKSV 167
+ + + L + E + + ++ D+ R+ G+
Sbjct: 99 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGA 158
Query: 168 PQIQAIPMAQLKRPVTKADFEMAIAKCRKTVTAADI 203
+ +A+ + + IA A
Sbjct: 159 LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 194
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 34.0 bits (78), Expect = 0.006
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 1 MKRLIKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGP 60
M + I+ W I V+ + Q I L F ++ GP
Sbjct: 5 MSQWIRFRCSKIDEGGDWRPI---VQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGP 61
Query: 61 PGTGKTMLAKAVA-IVYNQVHCGA---SNFPWN 89
TGK+ + + V S+F
Sbjct: 62 ANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLE 94
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.012
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
++MVG P GKT ++K + N +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIG 30
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 33.6 bits (75), Expect = 0.012
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78
+ ++G PGTGKT+ + + +Y
Sbjct: 41 HHYPRATLLGRPGTGKTVTLRKLWELYKD 69
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 33.6 bits (75), Expect = 0.013
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVA 73
+ +++ + L+ P + P L+ GP GTGK A+
Sbjct: 11 NALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALL 54
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 32.6 bits (73), Expect = 0.018
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
VL++GPPG GK A +A
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQ 28
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 32.9 bits (74), Expect = 0.019
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 114
+ + G G+GK+++A ++ + +++ ++ +
Sbjct: 47 LFLHGRAGSGKSVIASQ---ALSKSDQLIGINY-----------DSIVWLKDSGTAPKST 92
Query: 115 LLRLILRQVDLASDLDLELVSDQLE 139
+ L S+ DL
Sbjct: 93 FDLFTDILLMLKSEDDLLNFPSVEH 117
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 32.6 bits (73), Expect = 0.022
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
++++GPPG GK A + ++ H
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAH 30
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 32.6 bits (73), Expect = 0.022
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
+++GPPG GK A +A + H
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCH 31
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 32.2 bits (72), Expect = 0.024
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 48 IRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80
++K K + +VG PG+GK + + Y H
Sbjct: 5 LKKS-KIIFVVGGPGSGKGTQCEKIVQKYGYTH 36
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 32.1 bits (72), Expect = 0.026
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
++G PG+GK ++ + + H
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKH 34
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 32.3 bits (72), Expect = 0.028
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVYN 77
K V ++G +GK++L +A V+N
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFN 32
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 32.2 bits (72), Expect = 0.033
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81
V++ G P +GK + + Y H
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHI 32
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.1 bits (71), Expect = 0.036
Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 2/162 (1%)
Query: 55 VLMVGPPGTGKTMLAK--AVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGR 112
M G TGKT + AV G ID R E+ + V
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG 85
Query: 113 QELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQA 172
++L + +D +L+ S ++ D+A R G+ +
Sbjct: 86 SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQ 145
Query: 173 IPMAQLKRPVTKADFEMAIAKCRKTVTAADIRQFEEWNEKFG 214
+ +A+ R + + E +A A + +
Sbjct: 146 MHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPK 187
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.9 bits (71), Expect = 0.040
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 50 KPWKGVLMVGPPGTGKTMLAKAVAIVYNQVH 80
KP V ++G PG+GK + + VH
Sbjct: 5 KPNV-VFVLGGPGSGKGTQCANIVRDFGWVH 34
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 32.0 bits (71), Expect = 0.044
Identities = 21/139 (15%), Positives = 33/139 (23%), Gaps = 4/139 (2%)
Query: 55 VLMVGPPGTGKTMLA-KAVAIVYNQVHCGASNFPWNIDD---AFLRRLEKRIYVPLPSSS 110
G TGKT L+ G D F + I
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH 99
Query: 111 GRQELLRLILRQVDLASDLDLELVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQI 170
L R ++L A ++ D+ R G+
Sbjct: 100 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAE 159
Query: 171 QAIPMAQLKRPVTKADFEM 189
+ +AQ+ + K E
Sbjct: 160 RQQKLAQMLSRLQKISEEY 178
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 31.5 bits (70), Expect = 0.049
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+L+ G PG+GK+ +A+A+A
Sbjct: 7 LLLSGHPGSGKSTIAEALA 25
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 31.6 bits (70), Expect = 0.050
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 5 IKRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTG 64
+ +D V + ++ + + L + L + + +G G G
Sbjct: 2 LFKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNM---IYGSIGRVGIG 58
Query: 65 KTMLAKAVA 73
KT LAK
Sbjct: 59 KTTLAKFTV 67
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.4 bits (70), Expect = 0.052
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
++++G PG GK A+ + Y H
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPH 28
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.8 bits (71), Expect = 0.055
Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 21/205 (10%)
Query: 16 VQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIV 75
V + + K +P+ + + +H+ L+ G GTGK++L + +
Sbjct: 21 VSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHL-------LVNGATGTGKSVLLR--ELA 71
Query: 76 YNQVHCGASNFPWNIDDAFLRRLEK---RIYVPLPSSSGRQELLRLILRQVDLASDLDLE 132
Y + G + + L + + I P + ++ +D D +
Sbjct: 72 YTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTKGWSFFN------EIRNDYDWQ 125
Query: 133 LVSDQLEGYSASDIVVVCRDAAFMAMRAAIRGKSVPQIQAIPMAQLKRPVTKADFEMAIA 192
+ + +D + +R K + I M +L T A F+
Sbjct: 126 RYALSVVPRGKTDEAEEWASYGRLLLRETA--KKLALIGTPSMRELFHWTTIATFDDLRG 183
Query: 193 KCRKTVTAADIRQFEEWNEKFGSSV 217
T+ A + K +S
Sbjct: 184 FLEGTL-AESLFAGSNEASKALTSA 207
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 31.0 bits (69), Expect = 0.068
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
++++G PG GK A + Y H
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPH 28
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 31.4 bits (71), Expect = 0.068
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 42 PSYFQHIRKPW--------KGVLMVGPPGTGKTMLAKAVAIV---YNQVHCGASNFPWN 89
P Y + W + + GP TGKT +A+A+A Y V+ NFP+N
Sbjct: 86 PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFN 144
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.1 bits (69), Expect = 0.069
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
++++G P GK A+ + Y
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQ 28
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 31.0 bits (70), Expect = 0.069
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 55 VLMVGPPGTGKTMLAKAVA-----IVYNQVHCGASNFPWNIDDAFLRRLEK 100
VL+ G G GK ++A+ + V ++ P +I +A L EK
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 76
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 30.7 bits (68), Expect = 0.079
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
V ++G PG GK + Y H
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTH 29
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.7 bits (68), Expect = 0.091
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
+ ++G PG GK + + Y+ VH
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVH 36
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 30.3 bits (67), Expect = 0.099
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVH 80
+L+ G PG GKT L K +A +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKY 32
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.3 bits (67), Expect = 0.100
Identities = 11/76 (14%), Positives = 21/76 (27%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 114
+++ G PG GKT L K + + G + R + I +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 115 LLRLILRQVDLASDLD 130
++
Sbjct: 63 FFTSKKLVGSYGVNVQ 78
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 30.5 bits (67), Expect = 0.10
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 44 YFQHIRKPWK------GVLMVGPPGTGKTMLAKAVAIVYNQVHC 81
F+ + ++ +L+ PG G L A++
Sbjct: 10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQP 53
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 30.5 bits (67), Expect = 0.11
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 53 KGVLMVGPPGTGKTMLAKAVA 73
+ + +VGP G GK+ + + +A
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLA 23
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.4 bits (67), Expect = 0.11
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81
V + G G GKT ++ A+
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGI 48
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.4 bits (67), Expect = 0.11
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 53 KGVLMVGPPGTGKTMLAKAVA 73
+ +++ G GK+ + + +
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQ 24
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.4 bits (67), Expect = 0.12
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+++G G+GK+ +A VA
Sbjct: 9 YVLMGVSGSGKSAVASEVA 27
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.1 bits (66), Expect = 0.14
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+ + G +GK +A+A+
Sbjct: 9 IFLTGYMNSGKDAIARALQ 27
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.8 bits (66), Expect = 0.16
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 47 HIRKPWKGVLMVGPPGTGKTMLAKAVA 73
H+RK ++++G G G+ + +
Sbjct: 1 HMRKT---LVLLGAHGVGRRHIKNTLI 24
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 30.4 bits (68), Expect = 0.16
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 49 RKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78
R+ L+VG G GKT +A+ +A Q
Sbjct: 36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 65
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.7 bits (65), Expect = 0.17
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+L +G PG+GK+ A+
Sbjct: 5 ILTIGCPGSGKSTWAREFI 23
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 29.6 bits (65), Expect = 0.19
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
++ GP G GK+ K +A
Sbjct: 5 YIITGPAGVGKSTTCKRLA 23
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 29.6 bits (65), Expect = 0.19
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 59 GPPGTGKTMLAKAVAIVYNQVH 80
GP G GK L KA+A
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHL 31
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 29.6 bits (65), Expect = 0.19
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81
+L+ G PGTGKT +A+ +A +
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 29.4 bits (66), Expect = 0.23
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYV 104
V +VG G+GK+ +A + Y+ ++ + L L ++ +
Sbjct: 44 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.1 bits (65), Expect = 0.24
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 53 KGVLMVGPPGTGKTMLAKA 71
GVL+ G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.2 bits (64), Expect = 0.25
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 53 KGVLMVGPPGTGKTMLAKAVAIVYNQVH 80
K V++ G PG G T ++ +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 29.8 bits (66), Expect = 0.25
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 46 QHIRKPWKGVLMVGPPGTGKTMLAKAVA 73
+ + +L++GP G+GKT++A+ +A
Sbjct: 62 EEVELSKSNILLIGPTGSGKTLMAQTLA 89
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 29.1 bits (65), Expect = 0.25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 53 KGVLMVGPPGTGKTMLA 69
GVL+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 29.3 bits (65), Expect = 0.26
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 63 TGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 122
G T + V + + + + I +A L L + P P EL R++ R
Sbjct: 51 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 110
Query: 123 VDLASDLDLELVSDQLEGYSASDIVVVC---------RDAAFMAMRAAIRGKSVP 168
+ + +DL + + EG + V DA+ +A AA+ VP
Sbjct: 111 IRESEAVDLSKLVIE-EGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVP 164
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.6 bits (65), Expect = 0.27
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 55 VLMVGPPGTGKTMLAKAVAI 74
+V P G GK+MLA +A
Sbjct: 32 GALVSPGGAGKSMLALQLAA 51
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.3 bits (64), Expect = 0.28
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 55 VLMVGPPGTGKTMLAKAVA-----IVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSS 109
L++G TGK+ + K + FL L+K I +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 110 SGRQELLRLIL 120
+ L+ I
Sbjct: 92 PSLLKALKNIQ 102
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.1 bits (65), Expect = 0.28
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 53 KGVLMVGPPGTGKTMLA 69
GVL+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 29.2 bits (64), Expect = 0.28
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 53 KGVLMVGPPGTGKTMLAKAVA 73
+ + MVG G G T + + +A
Sbjct: 3 EPIFMVGARGCGMTTVGRELA 23
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 28.7 bits (63), Expect = 0.32
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 53 KGVLMVGPPGTGKTMLAKAVA 73
K ++ +G G+GK+ LA+A+A
Sbjct: 1 KNIVFIGFMGSGKSTLARALA 21
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.0 bits (64), Expect = 0.32
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEK 100
+ + G +GK+ LA + + + D L K
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRR--VHAYRLDGDNIRFGLNK 70
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 29.2 bits (64), Expect = 0.32
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 59 GPPGTGKTMLAKAVAIVYNQVH 80
GP +GK+ +AK +A + +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTY 31
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.5 bits (62), Expect = 0.34
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 47 HIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWN 89
H+ K ++ PG GKT I+
Sbjct: 2 HMLKKGMTTVLDFHPGAGKTRRF-LPQILAECARRRLRTLVLA 43
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 0.35
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 55 VLMVGPPGTGKTMLAKAVA--IVYNQV 79
+++G PG GKT + + +A IV V
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDV 72
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.8 bits (63), Expect = 0.40
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+ GTGKT L K +
Sbjct: 5 LAFAAWSGTGKTTLLKKLI 23
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 0.45
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 53 KGVLMVGPPGTGKTMLAKAVA 73
K ++ G PG GK+ + V
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVK 22
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 28.0 bits (61), Expect = 0.59
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
++VG PG+GK+ + + +A
Sbjct: 4 AVLVGLPGSGKSTIGRRLA 22
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 0.59
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 38 PLEKPSYFQHIRKPWKGVLMVGPPGTGKT 66
P P + P+ +++VG GTGK
Sbjct: 4 PKVIPD-----KIPYV-IMLVGVQGTGKA 26
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.4 bits (62), Expect = 0.60
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRI 102
L+ G GTGKT+ ++ +YN + + + + + K
Sbjct: 29 TLVSGTSGTGKTLF--SIQFLYNGIIEFDEPGVFVTFEETPQDIIKNA 74
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.1 bits (61), Expect = 0.64
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 47 HIRKPWKGVLMVGPPGTGKTMLAKAVA---IVYNQVHCGASNFPWNIDDAFL 95
H+ + + +L++G G GKT + + +V G + +
Sbjct: 1 HMTREMR-ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKF 51
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 0.88
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 55 VLMVGPPGTGK-TMLAK 70
+++VG GTGK T K
Sbjct: 14 IMVVGVNGTGKTTSCGK 30
>d1q5fa_ d.24.1.1 (A:) Type IVb pilin PilS {Salmonella typhi
[TaxId: 90370]}
Length = 156
Score = 27.3 bits (60), Expect = 0.92
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 48 IRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQV 79
+ W G ++V P G T I N+V
Sbjct: 65 LWNSWGGQIVVAPDTAGGTGFNNGFTITTNKV 96
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.8 bits (61), Expect = 0.98
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 55 VLMVGPPGTGKT 66
+VG G+GKT
Sbjct: 13 WFLVGLQGSGKT 24
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 52 WKG--VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNF 86
KG + + G G GKT+L + + H G S F
Sbjct: 66 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 102
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 1.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 55 VLMVGPPGTGKT 66
VL+VG G GKT
Sbjct: 9 VLVVGVNGVGKT 20
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.3 bits (60), Expect = 1.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 55 VLMVGPPGTGKT 66
+LMVG G GKT
Sbjct: 12 ILMVGVNGVGKT 23
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.3 bits (59), Expect = 1.2
Identities = 9/60 (15%), Positives = 15/60 (25%)
Query: 56 LMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQEL 115
+ G G GK+ A A +K ++ L + L
Sbjct: 28 TLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 87
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.3 bits (59), Expect = 1.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGAS 84
V++ GP GK+ + + + +H S
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVS 34
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 27.5 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 24 QVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78
Q KA + L EA+ + H KP L GP G GKT + ++
Sbjct: 27 QDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI 78
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 27.4 bits (59), Expect = 1.4
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 19 SDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVAIVYNQ 78
++ Q A +L++ + K + H+ L GPPGTGKT A+
Sbjct: 12 DEVTAQDHAVTVLKKTL-----KSANLPHM-------LFYGPPGTGKTSTILALTKELYG 59
Query: 79 VHCGASNFPW 88
S
Sbjct: 60 PDLMKSRILE 69
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.0 bits (58), Expect = 1.6
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
G G+GKT +
Sbjct: 37 TEFAGVFGSGKTQIMHQSC 55
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.0 bits (59), Expect = 1.9
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 114
+ + G GK+ A+ + + ++ D FL + L G E
Sbjct: 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG-FLHPNQVLKERGLMKKKGFPE 141
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.9 bits (58), Expect = 2.1
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHC 81
+++ G GK+ + A+ +
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMG 64
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.8 bits (59), Expect = 2.1
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRI-YVP 105
+VGP G+GK+ +A + +Y + R L +++ V
Sbjct: 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVG 94
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 470
Score = 26.9 bits (58), Expect = 2.3
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 120 LRQVDLASDLDLELVSDQLEGYSASDIVVVCRD 152
R+V++ D L ++ ++ + DI+V+ D
Sbjct: 36 QREVEVLHDRLLAML-EEDPTLTPRDIIVMVAD 67
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.3 bits (56), Expect = 2.5
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 59 GPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKR 101
G +GKT LA ++ + F + +
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHT 71
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.4 bits (57), Expect = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
V++ GP G GK+ L K +
Sbjct: 3 VVLSGPSGAGKSTLLKKLF 21
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.2 bits (57), Expect = 2.7
Identities = 2/19 (10%), Positives = 8/19 (42%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+L+ G + ++ +
Sbjct: 18 ILINGEDLSYPREVSLELP 36
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 2.7
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 55 VLMVGPPGTGKTMLAKAV---------AIVYNQVHCGASNFPW--NIDDAFLRRLEKRIY 103
V+ VG G+GKT L N G P+ +ID +E+ +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL-DTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 104 VPLPSSSGRQELLRLILRQVD 124
+ E ++ + +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFN 82
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.1 bits (56), Expect = 2.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+++ GP GTGK+ L K +
Sbjct: 4 IVISGPSGTGKSTLLKKLF 22
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 26.3 bits (57), Expect = 2.7
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 46 QHIRKPWKGVLMV---GPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKR 101
+ K L + GP G+GK+ + + + + G + + D F E +
Sbjct: 18 EWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQ 76
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.4 bits (57), Expect = 2.8
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 55 VLMVGPPGTGKT 66
+M PG GKT
Sbjct: 12 TIMDLHPGAGKT 23
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 25.7 bits (55), Expect = 3.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 53 KGVLMVGPPGTGKTML 68
+ VL VG +GKT+L
Sbjct: 1 RAVLFVGLCDSGKTLL 16
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 26.2 bits (56), Expect = 3.6
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 46 QHIRKPWKGVLMVGPPGTGKT--MLAKAVAIVYNQ 78
+ + P L++ G+GKT + K ++
Sbjct: 11 EFVTGP---CLVLAGAGSGKTRVITNKIAHLIRGC 42
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.8 bits (55), Expect = 3.8
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 55 VLMVGPPGTGKTMLAKAVA---IVYNQVHCGASNFPWNIDDAFL 95
+L +G GKT L + + Q ++ I +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 46
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 26.1 bits (56), Expect = 3.8
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 55 VLMVGPPGTGKT--MLAKAVAIVYNQ 78
+L++ G+GKT + + ++ +
Sbjct: 27 LLIMAGAGSGKTRVLTHRIAYLMAEK 52
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 25.7 bits (55), Expect = 4.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 41 KPSYFQHIRKPWKGVLMVGPPGTGKTMLAKAVA 73
K + Q +R +L++G GKT L K +A
Sbjct: 10 KSAPDQEVR-----ILLLGLDNAGKTTLLKQLA 37
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 25.7 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNF 86
L+V PP GKTML + +A H
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 77
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.4 bits (54), Expect = 4.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 55 VLMVGPPGTGKTML 68
+LM+G GKT +
Sbjct: 5 LLMLGLDNAGKTTI 18
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 25.7 bits (55), Expect = 4.5
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 59 GPPGTGKTMLAKAVAIVYNQVHCGASNFPWNI--DDAFLRRLEKRIY 103
G +GK+ + + + Q I D+F R L
Sbjct: 9 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQK 55
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.4 bits (54), Expect = 5.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 55 VLMVGPPGTGKTML 68
+LMVG GKT +
Sbjct: 3 ILMVGLDAAGKTTI 16
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 25.2 bits (54), Expect = 5.3
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 55 VLMVGPPGTGKTMLAKAV 72
++ P G GK+ L +A+
Sbjct: 5 YIVSAPSGAGKSSLIQAL 22
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.3 bits (55), Expect = 6.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+ + G G+GKT L +
Sbjct: 65 LAITGSTGSGKTSLLMLIL 83
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 25.2 bits (55), Expect = 6.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASN 85
L++G TGKT +A I + + G
Sbjct: 71 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 101
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.0 bits (53), Expect = 6.4
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 43 SYFQHIRKPWKGVLMVGPPGTGKTML 68
+ +K K ++ +G GKT L
Sbjct: 5 QFLGLYKKTGK-LVFLGLDNAGKTTL 29
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 24.9 bits (53), Expect = 6.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 55 VLMVGPPGTGKTML 68
+LM+G GKT +
Sbjct: 15 ILMLGLDAAGKTTI 28
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.8 bits (54), Expect = 7.3
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRI-YVP 105
+ GP G GK+ + + Y + ID+ L +I +V
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.1 bits (53), Expect = 7.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 56 LMVGPPGTGKTMLAKAVAIV 75
L++G G+GK+ L A+ +
Sbjct: 27 LIIGQNGSGKSSLLDAILVG 46
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.0 bits (53), Expect = 7.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 55 VLMVGPPGTGKTML 68
+++ GP +GKT L
Sbjct: 6 IIIAGPQNSGKTSL 19
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 24.8 bits (54), Expect = 7.8
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQVHCGASNFPWNIDDAFLRRLEKRIYV 104
V VG G GK+ L + Y+ NI D L +I +
Sbjct: 47 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 96
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 24.6 bits (52), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 55 VLMVGPPGTGKTML 68
V++VG GKT +
Sbjct: 18 VIIVGLDNAGKTTI 31
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 24.6 bits (52), Expect = 9.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 55 VLMVGPPGTGKTML 68
+ +VG +GKT
Sbjct: 5 LTLVGLQYSGKTTF 18
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 24.6 bits (52), Expect = 9.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 55 VLMVGPPGTGKTML 68
+L++G G GKT +
Sbjct: 20 ILILGLDGAGKTTI 33
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 24.5 bits (52), Expect = 9.2
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 55 VLMVGPPGTGKTMLAKAVAIVYNQV 79
+L++G +GK+ K + I++ Q
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHGQD 29
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 24.7 bits (53), Expect = 9.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
++GP G GKT + +A
Sbjct: 34 FGILGPSGAGKTTFMRIIA 52
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 24.3 bits (51), Expect = 9.5
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 55 VLMVGPPGTGKTMLAKA-----VAIVYNQVHCGASNFPWN 89
VL+VG P GK+ L AIV ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT 42
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB),
dimerization domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 100
Score = 23.9 bits (52), Expect = 9.7
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 6 KRDIIVERPDVQWSDIANQVKAKKLLQEAVILPLEKPSYFQHIRKPWKGVLMVGPPGTGK 65
K DI V W + +A Q A++ P + + I +P + + P +
Sbjct: 31 KDDIEVRFVLDNWEAKGSFSQADVHRQVAIVF--RTPPFLRDITEPITVKMQLRRPSDQE 88
Query: 66 T 66
Sbjct: 89 V 89
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 24.6 bits (53), Expect = 9.8
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 55 VLMVGPPGTGKTMLAKAVA 73
+++GP G GK++ + +A
Sbjct: 27 CVLLGPTGAGKSVFLELIA 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.398
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,352
Number of extensions: 39539
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 157
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)