BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15623
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + I++LGA+N PW +D A RR EKRIY+PLP + R
Sbjct: 254 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308
Query: 61 LLRLIL 66
+ RL L
Sbjct: 309 MFRLHL 314
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + + + +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 170 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 224
Query: 61 LLRL 64
+ +
Sbjct: 225 MFEI 228
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + + + +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 155 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 209
Query: 61 LLRL 64
+ +
Sbjct: 210 MFEI 213
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + + + +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 137 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191
Query: 61 LLRL 64
+ +
Sbjct: 192 MFEI 195
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + + + +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 146 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 200
Query: 61 LLRL 64
+ +
Sbjct: 201 MFEI 204
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + I++LGA+N PW +D A RR EKRIY+PLP R
Sbjct: 132 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 186
Query: 61 LLRLIL 66
+ +L L
Sbjct: 187 MFKLHL 192
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG+++ N + I+GA+N P ID A LR RL++ IY+PLP R
Sbjct: 140 NQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ +A D+DLE ++ G
Sbjct: 194 ILKANLRKSPVAKDVDLEFLAKMTNG 219
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG+++ N + I+GA+N P ID A LR RL++ IY+PLP R
Sbjct: 602 NQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ +A D+DLE ++ G
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNG 681
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGN 87
+L++ + + LA D+DLE V+++ G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG+++ N + I+GA+N P ID A LR RL++ IY+PLP R
Sbjct: 602 NQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ +A D+DLE ++ G
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNG 681
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGN 87
+L++ + + LA D+DLE V+++ G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 5/84 (5%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L +DG A+T++ D I+++GA+N P ID+A RRL KR+Y+PLP +S R++
Sbjct: 203 IKTEFLVQLDG-ATTSSED---RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258
Query: 61 L-LRLILRQVDLASDLDLELVSDQ 83
+ + L+ ++ S+ ++E + Q
Sbjct: 259 IVINLMSKEQCCLSEEEIEQIVQQ 282
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG D + I+GA+N P +D A LR R ++ I VP P GR E+
Sbjct: 143 QLLAEMDGF------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEI 196
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
L++ R+++LA D++LE ++ EG
Sbjct: 197 LKIHTRKMNLAEDVNLEEIAKMTEG 221
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L DG+ + D IV+L A+N P +D+A LRR KR+YV LP R+
Sbjct: 140 LKTEFLVEFDGLPGNPDGD---RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTREL 196
Query: 61 LL-RLILRQVDLASDLDLE 78
LL RL+ +Q S LD E
Sbjct: 197 LLNRLLQKQ---GSPLDTE 212
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGN 87
+L++ + + LA D+DLE V+++ G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGN 87
+L++ + + LA D+DLE V+++ G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGN 87
+L++ + + LA D+DLE V+++ G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGN 87
+L++ + + LA D+DLE V+++ G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG T +IV++ A+N P +D A LR R +++I + P GR++
Sbjct: 164 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 217
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LR+ R LA D+DL L++ + G
Sbjct: 218 ILRIHARGKPLAEDVDLALLAKRTPG 243
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG T +IV++ A+N P +D A LR R +++I + P GR++
Sbjct: 140 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 193
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LR+ R LA D+DL L++ + G
Sbjct: 194 ILRIHARGKPLAEDVDLALLAKRTPG 219
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG T +IV++ A+N P +D A LR R +++I + P GR++
Sbjct: 164 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 217
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LR+ R LA D+DL L++ + G
Sbjct: 218 ILRIHARGKPLAEDVDLALLAKRTPG 243
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG + + I+++ A+N P +D A LR R ++++ V LP GR++
Sbjct: 136 NQMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 61 LLRLILRQVDLASDLDLELVS 81
+L++ +R+V LA D+D +++
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIA 210
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG T +IV++ A+N P +D A LR R +++I + P GR++
Sbjct: 155 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 208
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LR+ R LA D+DL L++ + G
Sbjct: 209 ILRIHARGKPLAEDVDLALLAKRTPG 234
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG D + I+++ A+N P +D A LR R +K+I V P GR++
Sbjct: 140 NQLLVEMDGF------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L + R LA D++LE+++ + G
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPG 219
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG D + I+++ A+N P +D A LR R +K+I V P GR++
Sbjct: 140 NQLLVEMDGF------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L + R LA D++LE+++ + G
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPG 219
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG S +++L A+N P +D A +R R ++++ V P +GR E
Sbjct: 136 NQLLAEMDGFGSEN-----APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVE 190
Query: 61 LLRLILRQVDLASDLDLELVS 81
+L++ ++ V LA+D++L+ V+
Sbjct: 191 ILKVHIKGVKLANDVNLQEVA 211
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGR 58
+K+E L DG+ S + ++++GA+N P +D+A LRR KR+YV LP+ R
Sbjct: 234 LKTEFLIEFDGVQSAGD----DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 287
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
ELL MDG N TK I+ A+N P +D A LR RL++++ +PLP+ +GR E+
Sbjct: 307 ELLTQMDGF---DNLGQTK---IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360
Query: 62 LRLILRQVDLASDLDLEL---VSDQLEGNAVQ 90
++ +V + D E +SD G ++
Sbjct: 361 FKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR 392
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
ELL +DG ++ N I I+ A+N +D A LR R++++I P PS + R E+
Sbjct: 274 ELLNQLDGFETSKN------IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEI 327
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
LR+ R+++L ++L V++++ G
Sbjct: 328 LRIHSRKMNLTRGINLRKVAEKMNG 352
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
EL+ +DG DP +I ++ A+N P +D A LR R+++++ LP GR +
Sbjct: 335 ELITQLDGF------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANI 388
Query: 62 LRLILRQVDLASDLDLELVS 81
R+ + + + + EL+S
Sbjct: 389 FRIHSKSMSVERGIRWELIS 408
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
ELL +DG +S + +L A+N +D A LR RL+++I PLPS R ++
Sbjct: 307 ELLNQLDGFSSDDR------VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI 360
Query: 62 LRLILRQVDLASDLDL-ELVSDQLEGNAVQQKVM 94
L++ R++ D++ EL E N Q K +
Sbjct: 361 LQIHSRKMTTDDDINWQELARSTDEFNGAQLKAV 394
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ +T + +++L ++N +D A +R RL++ +++ LP+ R+E
Sbjct: 131 NQLLVEMDGMGTTDH------VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERRE 184
Query: 61 LLRLILRQVDL 71
+ L+ + L
Sbjct: 185 IFEQHLKSLKL 195
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46
++C M GI N D I++ + P + + F R L K
Sbjct: 69 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 110
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46
++C M GI N D I++ + P + + F R L K
Sbjct: 269 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 310
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46
++C M GI N D I++ + P + + F R L K
Sbjct: 264 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 305
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46
++C M GI N D I++ + P + + F R L K
Sbjct: 265 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 306
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46
++C M GI N D I++ + P + + F R L K
Sbjct: 264 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 305
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46
++C M GI N D I++ + P + + F R L K
Sbjct: 328 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 369
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKR 47
++C M GI N D I++ + P + + F R L K
Sbjct: 573 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKE 615
>pdb|2HOE|A Chain A, Crystal Structure Of N-Acetylglucosamine Kinase (Tm1224)
From Thermotoga Maritima At 2.46 A Resolution
Length = 380
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 51 PLPSSSGRQELLRLILRQVDLASD 74
PLPS S R+E L + R +D A D
Sbjct: 117 PLPSQSDREETLNVXYRIIDRAKD 140
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 35 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 85
NI DA LE+ +Y+ L LL L L ++DLA L +E+ D+LE
Sbjct: 91 NIVDA--TALERNLYLTLQLMEMGANLL-LALNKMDLAKSLGIEIDVDKLE 138
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE 85
NI DA LE+ +Y+ L LL L L + DLA L +E+ D+LE
Sbjct: 88 NIVDA--TALERNLYLTLQLXEXGANLL-LALNKXDLAKSLGIEIDVDKLE 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,596,273
Number of Sequences: 62578
Number of extensions: 125592
Number of successful extensions: 286
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 47
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)