BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15623
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1
PE=1 SV=1
Length = 491
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ T+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ LR+++LA D+DL +++ +EG
Sbjct: 389 ELLRISLRELELADDVDLASIAENMEG 415
>sp|Q1HGK7|KTNA1_CHICK Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1
PE=2 SV=1
Length = 492
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ +T N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 330 VKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ LR+++LA D+DL +++++EG
Sbjct: 390 ELLRINLRELELADDVDLANIAEKMEG 416
>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1
PE=2 SV=1
Length = 485
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 72/86 (83%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL MDG+ T+ DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR +
Sbjct: 324 VKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVD 383
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
LL++ L+++DLA+D++++ +++Q+EG
Sbjct: 384 LLKINLKELDLANDVNMDKIAEQMEG 409
>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1
PE=1 SV=1
Length = 491
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
MK+ELL MDG+ ++ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 329 MKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ LR+++LA D++L +++ +EG
Sbjct: 389 ELLRISLRELELADDVNLASIAENMEG 415
>sp|Q4R407|KTNA1_MACFA Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis
GN=KATNA1 PE=2 SV=1
Length = 491
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ ++ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ LR+++LA D+DL +++ +EG
Sbjct: 389 ELLRISLRELELADDVDLASIAENMEG 415
>sp|Q5U3S1|KATL1_DANRE Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio
GN=katnal1 PE=2 SV=1
Length = 488
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIASTTNA-DPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ + DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 326 VKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+VD+ASD+DL + ++++EG
Sbjct: 386 ELLKINLREVDVASDVDLTVFAEKIEG 412
>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus
GN=Katna1 PE=1 SV=1
Length = 491
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ ++ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ LR+++LA D++L +++ +EG
Sbjct: 389 ELLRISLRELELADDVNLASIAENMEG 415
>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis
GN=katna1 PE=2 SV=1
Length = 492
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ ++ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 330 VKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ L++++LA D+++E +++ ++G
Sbjct: 390 ELLRINLKELELADDVNIECIAENMDG 416
>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit A1 (Fragment) OS=Xenopus
laevis GN=katna1 PE=2 SV=1
Length = 486
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ ++ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR+
Sbjct: 326 VKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 385
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ L++++LA D+++E +++ ++G
Sbjct: 386 ELLRINLKELELADDVNIECIAENMDG 412
>sp|B5X3X5|KTNA1_SALSA Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1
PE=2 SV=1
Length = 486
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+K+ELL MDG+ ++ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLPS+ GR
Sbjct: 324 VKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRV 383
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELLR+ L++++LA+D+D+ +++Q EG
Sbjct: 384 ELLRINLKELELANDVDMAKIAEQSEG 410
>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus
GN=Katnal1 PE=1 SV=1
Length = 488
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 326 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+V+L D+ LE ++D+ EG
Sbjct: 386 ELLKISLREVELDPDVHLEDIADKTEG 412
>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens
GN=KATNAL1 PE=1 SV=1
Length = 490
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 328 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 387
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+V+L D+ LE +++++EG
Sbjct: 388 ELLKINLREVELDPDIQLEDIAEKIEG 414
>sp|A9RA82|KATL1_PAPAN Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis
GN=KATNAL1 PE=3 SV=1
Length = 490
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 328 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 387
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+V+L D+ LE +++++EG
Sbjct: 388 ELLKINLREVELDPDIQLEDIAEKIEG 414
>sp|B4USW8|KATL1_OTOGA Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur
garnettii GN=KATNAL1 PE=3 SV=1
Length = 490
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 328 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 387
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+V+L D+ LE +++++EG
Sbjct: 388 ELLKINLREVELDPDIQLEDIAEKIEG 414
>sp|B7NZ88|KATL1_RABIT Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus
cuniculus GN=KATNAL1 PE=3 SV=1
Length = 490
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 328 VKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 387
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+V+L D+ LE +++++EG
Sbjct: 388 ELLKISLREVELDPDIRLEDIAEKIEG 414
>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus
GN=Katnal1 PE=2 SV=1
Length = 488
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 326 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
ELL++ LR+V+L D+ LE ++++ EG
Sbjct: 386 ELLKISLREVELDPDIHLEDIAEKTEG 412
>sp|B3EX35|KATL1_SORAR Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus
GN=KATNAL1 PE=3 SV=1
Length = 490
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG+ N DP+K +++L A+NFPW+ID+A RRLEKRIY+PLP++ GR
Sbjct: 328 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRT 387
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
+LL++ LR+V+L D+ LE +++++EG
Sbjct: 388 DLLKINLREVELDPDIQLEDIAEKIEG 414
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus
purpuratus GN=KATNA1 PE=1 SV=1
Length = 516
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MKSELLCHMDGIAS-TTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
+KSELL MDG++ + + +K +++L A+NFPW+ID+A RRLEKRIY+PLP GR+
Sbjct: 354 VKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGRE 413
Query: 60 ELLRLILRQVDLASDLDLELVSDQLEG 86
+LLR+ L++V LA D+DL+ ++++++G
Sbjct: 414 QLLRINLKEVPLADDIDLKSIAEKMDG 440
>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana
GN=AAA1 PE=1 SV=1
Length = 523
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 67/88 (76%), Gaps = 2/88 (2%)
Query: 1 MKSELLCHMDGIAST-TNADPTKSIV-ILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGR 58
+KSELL +DG+++T TN D ++ IV +L A+NFPW+ID+A RRLEKRIY+PLP R
Sbjct: 359 VKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESR 418
Query: 59 QELLRLILRQVDLASDLDLELVSDQLEG 86
+ L+ + LR V++ASD+++E V+ + EG
Sbjct: 419 KALININLRTVEVASDVNIEDVARRTEG 446
>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens
GN=KATNAL2 PE=1 SV=3
Length = 538
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
MK+ELL MDG+A + + + +L ASN PW +D A LRRLEKRI V LPS RQ
Sbjct: 376 MKTELLVQMDGLARSEDL-----VFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQA 430
Query: 61 LLRLIL------RQVDLASDLDLELVSDQLEG 86
++ L R ++L ++L+ ++S + EG
Sbjct: 431 MIYHWLPPVSKSRALELHTELEYSVLSQETEG 462
>sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus
tropicalis GN=katnal2 PE=2 SV=1
Length = 542
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 11/92 (11%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
MK+ELL MDG+A + + + +L ASN PW +D A LRRLEKRI V LPS RQ
Sbjct: 380 MKTELLVQMDGLARSDDL-----VFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQA 434
Query: 61 LLRLIL------RQVDLASDLDLELVSDQLEG 86
+++ L V+L +DLD + + +G
Sbjct: 435 MIQHWLPPVSNSSGVELRTDLDYSTLGAETDG 466
>sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus
GN=Katnal2 PE=2 SV=2
Length = 539
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 11/92 (11%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
MK+ELL MDG+A + + + +L ASN PW +D A LRRLEKRI V LPS RQ
Sbjct: 377 MKTELLVQMDGLARSEDL-----VFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQA 431
Query: 61 LLRLIL------RQVDLASDLDLELVSDQLEG 86
++ L ++L + L+ ++S + EG
Sbjct: 432 MIYHWLPPVSKNHALELHTQLEYSVLSQETEG 463
>sp|P40328|TBP6_YEAST Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YTA6 PE=1 SV=2
Length = 754
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKS------IVILGASNFPWNIDDAFLRRLEKRIYVPLPS 54
+K+ELL ++S T ++ +++LGA+N PW IDDA RR +++Y+PLP
Sbjct: 590 IKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPD 649
Query: 55 SSGR-QELLRLILRQVDLASDLDLELVSDQLEG 86
R L RL+ +Q + DLD EL+++ EG
Sbjct: 650 YETRLYHLKRLMAKQKNSLQDLDYELITEMTEG 682
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + N D T ++LGA+N PW +D A RR EKRIY+PLP + R +
Sbjct: 247 IKTEFLVQMQGVGN--NNDGT---LVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQ 301
Query: 61 LLRLIL 66
+ RL L
Sbjct: 302 MFRLHL 307
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + N D T ++LGA+N PW +D A RR EKRIY+PLP + R +
Sbjct: 247 IKTEFLVQMQGVGN--NNDGT---LVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQ 301
Query: 61 LLRLIL 66
+ RL L
Sbjct: 302 MFRLHL 307
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + N D T ++LGA+N PW +D A RR EKRIY+PLP + R +
Sbjct: 247 IKTEFLVQMQGVGN--NNDGT---LVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQ 301
Query: 61 LLRLIL 66
+ RL L
Sbjct: 302 MFRLHL 307
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + I++LGA+N PW +D A RR EKRIY+PLP + R
Sbjct: 254 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308
Query: 61 LLRLIL 66
+ RL L
Sbjct: 309 MFRLHL 314
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ S N + ++GA+N P +D A +R RL+ +YVPLP + R+
Sbjct: 624 NQLLTEMDGMTSKKN------VFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQASREG 677
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ +ASD+D+E ++ + G
Sbjct: 678 ILKAQLRKTPVASDVDIEFIASKTHG 703
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + +N +V++ A+N P +ID A R R ++ + + +P +GR E
Sbjct: 347 SQLLTLMDGMKARSN------VVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLE 400
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L + + + L D+DLE ++ + G
Sbjct: 401 ILSIHTKNMKLGEDVDLETIAAETHG 426
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M+G+ + +++LGA+N PW +D A RR EKRIY+PLP++ R
Sbjct: 248 IKTEFLVQMNGVGKDESG-----VLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARAR 302
Query: 61 LLRLILRQV 69
+ L + ++
Sbjct: 303 MFELNVGKI 311
>sp|Q0VD48|VPS4B_BOVIN Vacuolar protein sorting-associated protein 4B OS=Bos taurus
GN=VPS4B PE=2 SV=1
Length = 444
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + I++LGA+N PW +D A RR EKRIY+PLP + R
Sbjct: 254 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308
Query: 61 LLRLIL 66
+ +L L
Sbjct: 309 MFKLHL 314
>sp|A8XV40|SPAST_CAEBR Probable spastin homolog spas-1 OS=Caenorhabditis briggsae
GN=spas-1 PE=3 SV=2
Length = 542
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
MK+E L DG S+ P I+++GA+N P+ +DDA LRR KRI + LP + R+E
Sbjct: 388 MKTEFLVQFDGATSS----PDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKE 443
Query: 61 LLRLILRQVDLASDL---DLELVSDQLEG 86
L+ L++ D+ L D+ ++ G
Sbjct: 444 LITNTLKKHDMMDGLSSSDIRYIASNTSG 472
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + ++ +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 252 IKTELLVQMNGVG-----NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 306
Query: 61 LLRL 64
+ +
Sbjct: 307 MFEI 310
>sp|P34808|KTNA1_CAEEL Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans
GN=mei-1 PE=1 SV=1
Length = 472
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+KSE L MDG + N ++ + +L A+N PW +D+A RR EKRI++PLP R++
Sbjct: 313 VKSEFLVQMDG---SQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKK 369
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
L+ + + +++ + ++ + EG
Sbjct: 370 LIEKSMEGTPKSDEINYDDLAARTEG 395
>sp|Q6GX84|FIGL1_RAT Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1
Length = 677
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L +DG A+T++ D I+++GA+N P ID+A RRL KR+Y+PLP +S R++
Sbjct: 523 IKTEFLVQLDG-ATTSSED---RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 578
Query: 61 L-LRLILRQVDLASDLDLELVSDQLEG 86
+ + L+ ++ +D + ELV Q +G
Sbjct: 579 IVVNLMSKEQCCLTDEETELVVQQSDG 605
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + I++LGA+N PW +D A RR EKRIY+PLP R
Sbjct: 254 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 308
Query: 61 LLRLIL 66
+ +L L
Sbjct: 309 MFKLHL 314
>sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A OS=Danio rerio
GN=atad1a PE=2 SV=2
Length = 380
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
MK++ + DG+ + N+ ++++GA+N P ++D A LRR+ +V LP+++ R+E
Sbjct: 215 MKAQFMSLWDGLDTGENS----QVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREE 270
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LRLIL +L++ ++L+ ++ Q EG
Sbjct: 271 ILRLILSGENLSNAINLKEIASQSEG 296
>sp|Q9VQN8|FIGL1_DROME Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2
SV=2
Length = 523
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L H+DG AS ++++GA+N P +D+A RR +R+YVPLP+ RQ+
Sbjct: 369 LKNEFLIHLDGAASNEEI----RVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQK 424
Query: 61 LLRLILRQV----DLASDLDLELVSDQLEGNAV 89
++ ++ QV D+ ++L ++D G V
Sbjct: 425 IIEKLIHQVKHNLDVRQVIELAELTDGYSGADV 457
>sp|Q8BPY9|FIGL1_MOUSE Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1
Length = 683
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L +DG A+T++ D I+++GA+N P ID+A RRL KR+Y+PLP +S R++
Sbjct: 529 IKTEFLVQLDG-ATTSSED---RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 584
Query: 61 LL-RLILRQVDLASDLDLELVSDQLEG 86
++ L+ ++ SD + +LV Q +G
Sbjct: 585 IVGNLMSKEQCCLSDEETDLVVQQSDG 611
>sp|A7T395|SPAST_NEMVE Spastin OS=Nematostella vectensis GN=v1g144095 PE=3 SV=2
Length = 597
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L DG+ ADP + I+++GA+N P +DDA LRR+ KRI++PLP R+
Sbjct: 443 LKTEFLVSFDGVV----ADPEERILVMGATNRPQELDDAALRRMVKRIHIPLPDKETRKV 498
Query: 61 LLRLIL 66
LL +L
Sbjct: 499 LLTKLL 504
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ + I++LGA+N PW +D A RR EKRIY+PLP R
Sbjct: 254 IKTEFLVQMRGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 308
Query: 61 LLRLIL 66
+ +L L
Sbjct: 309 MFKLHL 314
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDGI P +VI+ A+N P +D A LR R ++ IYVP P + R E
Sbjct: 610 NQLLAEMDGIV------PLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFE 663
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L++ + V LA D+ LE ++++ EG
Sbjct: 664 ILKVHTKNVPLAEDVSLEDIAEKAEG 689
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDGI ++++GA+N P ID A R R ++ I + P + GR++
Sbjct: 334 AQLLTLMDGIKGRGR------VIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKD 387
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L++ R + + D+DL+ +++ G
Sbjct: 388 ILQVHTRNMPITDDVDLDKLAEMTYG 413
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ S K++ ++GA+N P ID A +R RL++ IYVPLP R
Sbjct: 621 NQLLTEMDGVNSK------KNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFS 674
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR +A D+DL V+ G
Sbjct: 675 ILQTQLRHTPVAEDVDLRAVAKATHG 700
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + +N +V++ A+N P +ID A R R ++ + V +P +GR E
Sbjct: 346 SQLLTLMDGMKARSN------VVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLE 399
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LR+ + + LA D+DLE ++ + G
Sbjct: 400 ILRIHTKNMKLADDVDLEQIAAETHG 425
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 11/98 (11%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG DP ++ IL A+N P +D A LR R ++ I VP+P++ R+++
Sbjct: 285 QLLAEMDGF------DPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQI 338
Query: 62 LRLILRQVDLASDLDLE---LVSDQLEGNAVQQKVMKS 96
L++ R+++LA D+DL L++D+ G + VM++
Sbjct: 339 LKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEA 376
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL +DG+ + K +V++ A+N P ID A LR RLE+ IY+P P R E
Sbjct: 578 SQLLTELDGL------EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVE 631
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+ ++ LR LA D+++E ++++ EG
Sbjct: 632 IFKIHLRGKPLADDVNIEELAEKTEG 657
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ + + ++++ A+N P ID A R R ++ I + +P GR+E
Sbjct: 304 AQLLALMDGLEARGD------VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKE 357
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L + R++ LA D+DLE +++ G
Sbjct: 358 ILEIHTRKMPLAEDVDLEELAELTNG 383
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL +DG + N D +V +GA+NFP ++D A R R ++ I+VPLP GR
Sbjct: 388 NQLLVDLDGF--SKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLA 445
Query: 61 LLRLILRQVDLASDLDLELVSDQLEGNA 88
+L R V L D+DL +++ G A
Sbjct: 446 ILLQHTRHVPLGKDVDLSIIARGTSGFA 473
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ + K++ I+GA+N P ID A LR RL++ IY+PLP R +
Sbjct: 606 NQLLTEMDGM------NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQ 659
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+ + LR+ L+ D+DL ++ +G
Sbjct: 660 IFKACLRKSPLSKDIDLRALAKHTQG 685
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ S + ++++GA+N P +ID A R R ++ I + +P GR E
Sbjct: 330 SQLLTLMDGLKSRAH------VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L + + + LA ++DLE +S G
Sbjct: 384 VLGIHTKNMKLAEEVDLERISKDTHG 409
>sp|P28737|MSP1_YEAST Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MSP1 PE=1 SV=2
Length = 362
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E + DG+ + ++I+GA+N +IDDAFLRRL KR V LP S R +
Sbjct: 212 LKAEFMTLWDGLLNNGR------VMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYK 265
Query: 61 LLRLILRQVDLASD-LDLELVSDQLEG 86
+L ++L+ L D DL+L++D +G
Sbjct: 266 ILSVLLKDTKLDEDEFDLQLIADNTKG 292
>sp|O88967|YMEL1_MOUSE ATP-dependent zinc metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1
PE=2 SV=1
Length = 715
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG P + ++I+GA+NFP +D+A +R R + ++ VP P GR E
Sbjct: 403 NQLLAEMDGF------KPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTE 456
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG-------NAVQQKVMKSYT--KKTFCGKNSTPSQ 111
+L+ L ++ +D E+++ G N V Q +K+ K+ K S+
Sbjct: 457 ILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSK 516
Query: 112 PKLLQAERPFRRS 124
K+L P RRS
Sbjct: 517 DKILMG--PERRS 527
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG+ + N + I+GA+N P ID A LR RL++ IY+PLP + R +
Sbjct: 609 NQVLTEMDGMNAKKN------VFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQ 662
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ L+ DLDL ++ G
Sbjct: 663 ILKASLRKTPLSKDLDLTFLAKNTVG 688
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ +N +V++ A+N P +ID A R R ++ I + +P + GR E
Sbjct: 332 SQLLTLMDGVKGRSN------LVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLE 385
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+LR+ + + LA D+DLE ++++ G
Sbjct: 386 ILRIHTKNMKLADDVDLEQIANECHG 411
>sp|Q96TA2|YMEL1_HUMAN ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1
PE=1 SV=2
Length = 773
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG P + ++I+GA+NFP +D+A +R R + ++ VP P GR E
Sbjct: 461 NQLLAEMDGF------KPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTE 514
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG-------NAVQQKVMKSYT--KKTFCGKNSTPSQ 111
+L+ L ++ +D E+++ G N V Q +K+ K+ K S+
Sbjct: 515 ILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSK 574
Query: 112 PKLLQAERPFRRS 124
K+L P RRS
Sbjct: 575 DKILMG--PERRS 585
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,511,845
Number of Sequences: 539616
Number of extensions: 1730729
Number of successful extensions: 5292
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 4859
Number of HSP's gapped (non-prelim): 549
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)