Query psy15623
Match_columns 133
No_of_seqs 193 out of 1161
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:26:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 4.3E-30 9.3E-35 199.4 13.1 115 3-123 276-394 (406)
2 KOG0730|consensus 100.0 6.1E-29 1.3E-33 204.1 12.0 118 1-124 554-677 (693)
3 KOG0738|consensus 99.9 3E-27 6.5E-32 185.3 9.8 124 1-126 332-474 (491)
4 KOG0733|consensus 99.9 8.5E-26 1.8E-30 184.7 9.8 118 1-124 631-772 (802)
5 KOG0734|consensus 99.9 1.6E-25 3.5E-30 181.1 9.6 112 2-119 424-539 (752)
6 COG1223 Predicted ATPase (AAA+ 99.9 4.5E-25 9.7E-30 166.2 11.1 124 1-130 238-364 (368)
7 KOG0652|consensus 99.9 6.8E-24 1.5E-28 160.4 9.7 117 3-125 296-416 (424)
8 KOG0737|consensus 99.9 1E-23 2.3E-28 164.2 10.0 97 1-101 213-309 (386)
9 KOG0733|consensus 99.9 1.2E-23 2.6E-28 172.2 10.5 101 1-103 309-411 (802)
10 PTZ00454 26S protease regulato 99.9 7.4E-23 1.6E-27 163.4 13.9 117 2-124 269-389 (398)
11 TIGR01243 CDC48 AAA family ATP 99.9 1.2E-22 2.5E-27 172.6 12.4 118 1-124 574-713 (733)
12 COG0465 HflB ATP-dependent Zn 99.9 8.2E-23 1.8E-27 168.5 10.1 112 2-119 273-388 (596)
13 KOG0731|consensus 99.9 2.1E-22 4.5E-27 169.0 11.9 112 2-119 435-551 (774)
14 KOG0728|consensus 99.9 1.4E-22 3.1E-27 152.5 9.0 113 3-121 272-388 (404)
15 COG0464 SpoVK ATPases of the A 99.9 2.6E-22 5.6E-27 163.8 11.0 118 1-124 362-486 (494)
16 KOG0736|consensus 99.9 2.7E-22 5.8E-27 167.4 9.9 121 1-125 793-936 (953)
17 PRK03992 proteasome-activating 99.9 2.4E-21 5.3E-26 154.4 14.3 118 2-125 255-376 (389)
18 PTZ00361 26 proteosome regulat 99.9 1.7E-21 3.8E-26 157.0 13.2 126 2-133 307-437 (438)
19 PRK10733 hflB ATP-dependent me 99.9 1.8E-21 4E-26 163.4 13.0 114 2-121 275-392 (644)
20 CHL00195 ycf46 Ycf46; Provisio 99.9 2.2E-21 4.7E-26 158.3 12.9 116 2-125 347-467 (489)
21 TIGR01241 FtsH_fam ATP-depende 99.9 6.5E-21 1.4E-25 155.9 13.4 114 2-121 178-295 (495)
22 KOG0735|consensus 99.8 3.8E-21 8.2E-26 159.7 9.7 93 1-99 787-881 (952)
23 KOG0726|consensus 99.8 1.2E-21 2.7E-26 149.8 5.7 124 4-133 311-439 (440)
24 KOG0739|consensus 99.8 2.4E-21 5.3E-26 148.5 4.6 88 1-93 252-340 (439)
25 CHL00206 ycf2 Ycf2; Provisiona 99.8 8.9E-20 1.9E-24 163.2 13.5 115 2-119 1754-1875(2281)
26 KOG0727|consensus 99.8 4.3E-20 9.3E-25 139.3 9.8 114 2-121 279-396 (408)
27 KOG0740|consensus 99.8 4.2E-20 9.2E-25 147.4 9.5 120 1-124 272-407 (428)
28 TIGR01242 26Sp45 26S proteasom 99.8 2.4E-19 5.2E-24 141.6 13.8 114 2-121 246-363 (364)
29 CHL00176 ftsH cell division pr 99.8 1.1E-19 2.4E-24 152.3 12.0 114 2-121 306-423 (638)
30 KOG0741|consensus 99.8 5.2E-21 1.1E-25 155.0 3.0 118 1-124 353-493 (744)
31 KOG0730|consensus 99.8 1.3E-19 2.8E-24 149.4 10.7 115 1-124 304-419 (693)
32 KOG0729|consensus 99.8 2.9E-20 6.3E-25 141.1 6.1 113 3-121 302-418 (435)
33 TIGR03689 pup_AAA proteasome A 99.8 8.2E-18 1.8E-22 137.7 11.8 122 1-128 317-486 (512)
34 KOG0732|consensus 99.7 1.3E-17 2.8E-22 143.8 10.4 117 1-123 390-527 (1080)
35 TIGR01243 CDC48 AAA family ATP 99.7 3.5E-16 7.7E-21 133.2 12.8 118 2-125 299-439 (733)
36 KOG0651|consensus 99.7 1.8E-17 3.9E-22 127.5 2.7 115 3-123 257-375 (388)
37 PLN00020 ribulose bisphosphate 99.5 2.7E-14 5.9E-19 112.8 7.8 87 3-92 242-340 (413)
38 KOG0742|consensus 99.4 2E-12 4.4E-17 103.2 10.3 98 20-117 482-607 (630)
39 KOG0744|consensus 99.4 2.8E-12 6.1E-17 99.6 7.9 114 1-120 281-413 (423)
40 KOG0743|consensus 99.1 2.1E-10 4.6E-15 92.1 8.6 88 2-94 321-411 (457)
41 COG0464 SpoVK ATPases of the A 99.1 2.2E-09 4.9E-14 87.9 11.8 117 1-124 103-229 (494)
42 KOG0736|consensus 99.0 6.5E-09 1.4E-13 88.2 11.5 104 21-124 531-656 (953)
43 KOG0735|consensus 98.5 4.6E-07 1E-11 76.8 9.0 104 22-125 540-652 (952)
44 CHL00181 cbbX CbbX; Provisiona 98.4 7E-06 1.5E-10 63.4 11.8 116 2-126 148-284 (287)
45 TIGR00635 ruvB Holliday juncti 98.4 8.4E-06 1.8E-10 62.7 12.2 98 22-120 128-228 (305)
46 PRK00080 ruvB Holliday junctio 98.4 8.3E-06 1.8E-10 63.7 12.1 99 23-122 150-251 (328)
47 TIGR02902 spore_lonB ATP-depen 98.2 1.4E-05 3.1E-10 66.5 10.8 93 24-119 235-330 (531)
48 PF00004 AAA: ATPase family as 98.2 2E-06 4.3E-11 57.6 4.2 46 2-52 86-132 (132)
49 TIGR02880 cbbX_cfxQ probable R 98.2 4.2E-05 9.2E-10 58.9 11.2 85 2-94 147-244 (284)
50 TIGR00362 DnaA chromosomal rep 98.0 6.4E-05 1.4E-09 60.4 10.0 110 4-120 220-336 (405)
51 PRK14961 DNA polymerase III su 98.0 0.00022 4.8E-09 56.6 12.5 105 3-119 137-242 (363)
52 TIGR02397 dnaX_nterm DNA polym 97.9 0.00018 3.9E-09 56.3 11.3 103 3-117 135-238 (355)
53 PRK06645 DNA polymerase III su 97.9 0.00027 5.9E-09 58.6 12.6 106 3-118 146-253 (507)
54 PRK11034 clpA ATP-dependent Cl 97.9 5.7E-05 1.2E-09 65.3 8.8 50 22-72 314-368 (758)
55 PRK00149 dnaA chromosomal repl 97.9 9.6E-05 2.1E-09 60.2 9.4 111 4-121 232-349 (450)
56 TIGR00763 lon ATP-dependent pr 97.9 5.3E-05 1.1E-09 65.7 7.9 71 22-93 462-544 (775)
57 PRK14962 DNA polymerase III su 97.9 0.00038 8.3E-09 57.3 12.3 105 3-119 135-240 (472)
58 TIGR02928 orc1/cdc6 family rep 97.8 0.0006 1.3E-08 53.6 12.0 100 22-123 164-276 (365)
59 PRK00411 cdc6 cell division co 97.8 0.00046 1E-08 54.8 11.2 100 23-123 173-284 (394)
60 PRK05563 DNA polymerase III su 97.8 0.00073 1.6E-08 56.7 12.6 102 3-116 137-239 (559)
61 TIGR02639 ClpA ATP-dependent C 97.8 0.0002 4.2E-09 61.8 9.3 100 22-122 310-430 (731)
62 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0002 4.4E-09 62.7 9.3 68 22-90 315-392 (852)
63 PRK06893 DNA replication initi 97.7 0.00057 1.2E-08 50.9 10.5 95 23-118 126-227 (229)
64 TIGR02881 spore_V_K stage V sp 97.7 0.00022 4.9E-09 54.0 8.3 61 3-71 131-196 (261)
65 PRK09087 hypothetical protein; 97.7 0.00047 1E-08 51.5 9.3 110 5-121 106-222 (226)
66 PRK12402 replication factor C 97.7 0.00066 1.4E-08 52.6 10.4 90 25-119 157-247 (337)
67 PRK14956 DNA polymerase III su 97.6 0.0016 3.4E-08 53.8 12.2 103 3-117 139-242 (484)
68 PRK08727 hypothetical protein; 97.5 0.0012 2.7E-08 49.3 9.9 94 25-119 129-229 (233)
69 PRK07003 DNA polymerase III su 97.5 0.0014 3.1E-08 56.8 11.3 82 3-94 137-219 (830)
70 PRK07133 DNA polymerase III su 97.5 0.0022 4.8E-08 55.3 12.4 103 3-117 136-239 (725)
71 PRK14970 DNA polymerase III su 97.5 0.004 8.7E-08 49.3 13.2 91 23-117 138-229 (367)
72 PRK14088 dnaA chromosomal repl 97.5 0.00077 1.7E-08 55.0 9.3 111 4-121 215-332 (440)
73 PRK12323 DNA polymerase III su 97.5 0.0014 3.1E-08 55.9 10.7 83 3-95 142-225 (700)
74 PRK06620 hypothetical protein; 97.5 0.0019 4.1E-08 47.8 10.1 94 23-118 114-213 (214)
75 PRK05896 DNA polymerase III su 97.5 0.0022 4.8E-08 54.3 11.3 102 3-116 137-239 (605)
76 PRK14964 DNA polymerase III su 97.5 0.003 6.5E-08 52.3 11.8 103 3-117 134-237 (491)
77 PRK14953 DNA polymerase III su 97.4 0.0034 7.4E-08 51.9 12.1 103 3-117 137-240 (486)
78 PRK07940 DNA polymerase III su 97.4 0.00076 1.6E-08 54.4 8.0 78 3-93 135-212 (394)
79 PRK08084 DNA replication initi 97.4 0.0026 5.6E-08 47.6 10.2 94 24-118 133-233 (235)
80 PRK12422 chromosomal replicati 97.4 0.0028 6.1E-08 51.9 10.8 98 23-121 236-343 (445)
81 PRK00440 rfc replication facto 97.4 0.0034 7.4E-08 48.1 10.9 92 23-119 132-224 (319)
82 PRK14958 DNA polymerase III su 97.4 0.0026 5.6E-08 52.9 10.6 105 3-119 137-242 (509)
83 PRK14960 DNA polymerase III su 97.4 0.0046 1E-07 52.9 12.1 103 3-117 136-239 (702)
84 PRK04195 replication factor C 97.4 0.0039 8.4E-08 51.4 11.5 90 24-117 131-221 (482)
85 PRK08903 DnaA regulatory inact 97.4 0.0053 1.1E-07 45.3 11.1 108 5-119 110-224 (227)
86 PRK14963 DNA polymerase III su 97.3 0.005 1.1E-07 51.2 12.0 103 3-118 134-237 (504)
87 PRK08451 DNA polymerase III su 97.3 0.0068 1.5E-07 50.7 12.6 102 3-116 135-237 (535)
88 PRK14951 DNA polymerase III su 97.3 0.0063 1.4E-07 51.8 12.6 103 3-117 142-245 (618)
89 PRK06647 DNA polymerase III su 97.3 0.0054 1.2E-07 51.7 11.9 103 3-117 137-240 (563)
90 PLN03025 replication factor C 97.3 0.0053 1.1E-07 47.8 11.0 88 24-116 130-218 (319)
91 PRK10865 protein disaggregatio 97.3 0.00053 1.1E-08 60.2 5.9 67 21-88 305-381 (857)
92 PRK14965 DNA polymerase III su 97.3 0.0037 8E-08 52.7 10.6 102 3-116 137-239 (576)
93 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.0055 1.2E-07 44.8 10.3 95 23-118 124-225 (226)
94 PRK08691 DNA polymerase III su 97.3 0.0052 1.1E-07 52.8 11.3 105 3-119 137-242 (709)
95 PRK14086 dnaA chromosomal repl 97.2 0.0052 1.1E-07 52.2 10.7 110 4-121 398-515 (617)
96 PRK06305 DNA polymerase III su 97.2 0.01 2.2E-07 48.6 12.3 82 3-94 139-221 (451)
97 PRK09111 DNA polymerase III su 97.2 0.0081 1.8E-07 50.9 11.8 104 3-118 150-254 (598)
98 PRK07764 DNA polymerase III su 97.2 0.0097 2.1E-07 52.2 12.4 82 3-94 138-220 (824)
99 TIGR03346 chaperone_ClpB ATP-d 97.2 0.001 2.2E-08 58.4 6.5 68 22-90 301-378 (852)
100 PTZ00112 origin recognition co 97.2 0.0029 6.3E-08 55.9 9.1 103 22-126 901-1011(1164)
101 TIGR00678 holB DNA polymerase 97.1 0.0031 6.8E-08 45.2 7.8 71 3-87 114-184 (188)
102 PHA02544 44 clamp loader, smal 97.1 0.0085 1.8E-07 46.2 10.7 43 23-66 131-173 (316)
103 PRK14959 DNA polymerase III su 97.1 0.0079 1.7E-07 51.2 11.0 103 3-117 137-240 (624)
104 PRK07994 DNA polymerase III su 97.1 0.013 2.8E-07 50.2 12.3 83 3-95 137-220 (647)
105 PRK04132 replication factor C 97.1 0.01 2.2E-07 52.2 11.7 76 3-87 648-724 (846)
106 PRK13407 bchI magnesium chelat 97.1 0.022 4.8E-07 45.1 12.5 98 22-119 170-304 (334)
107 PRK05642 DNA replication initi 97.0 0.0086 1.9E-07 44.8 9.6 108 4-118 118-232 (234)
108 PRK14957 DNA polymerase III su 97.0 0.018 4E-07 48.3 12.3 103 3-117 137-240 (546)
109 PRK14949 DNA polymerase III su 97.0 0.026 5.6E-07 50.0 13.3 83 3-95 137-220 (944)
110 PRK13342 recombination factor 97.0 0.015 3.2E-07 47.0 11.1 91 23-119 120-217 (413)
111 PRK14087 dnaA chromosomal repl 96.9 0.0094 2E-07 48.9 9.7 98 23-121 240-348 (450)
112 PRK14952 DNA polymerase III su 96.9 0.024 5.2E-07 48.0 12.1 104 3-117 136-240 (584)
113 PRK14969 DNA polymerase III su 96.9 0.016 3.5E-07 48.5 10.7 103 3-117 137-240 (527)
114 TIGR02640 gas_vesic_GvpN gas v 96.9 0.018 4E-07 43.7 10.2 95 22-122 150-258 (262)
115 PRK14971 DNA polymerase III su 96.8 0.033 7.1E-07 47.5 12.4 83 3-95 139-222 (614)
116 PRK14954 DNA polymerase III su 96.7 0.047 1E-06 46.6 12.6 105 3-117 145-253 (620)
117 TIGR02030 BchI-ChlI magnesium 96.7 0.031 6.7E-07 44.3 10.7 100 22-121 173-309 (337)
118 PRK14950 DNA polymerase III su 96.7 0.053 1.1E-06 45.9 12.6 102 3-116 138-240 (585)
119 PRK14955 DNA polymerase III su 96.6 0.024 5.3E-07 45.6 9.8 106 3-118 145-254 (397)
120 CHL00195 ycf46 Ycf46; Provisio 96.6 0.047 1E-06 45.3 11.5 73 23-98 115-188 (489)
121 PF00308 Bac_DnaA: Bacterial d 96.5 0.022 4.8E-07 42.2 8.4 84 4-94 118-207 (219)
122 PRK06964 DNA polymerase III su 96.5 0.0075 1.6E-07 47.8 6.1 54 3-65 150-203 (342)
123 TIGR02903 spore_lon_C ATP-depe 96.5 0.041 9E-07 46.8 10.8 94 23-119 323-428 (615)
124 TIGR02031 BchD-ChlD magnesium 96.5 0.065 1.4E-06 45.4 11.8 98 23-121 127-258 (589)
125 PRK09112 DNA polymerase III su 96.4 0.021 4.7E-07 45.4 8.3 80 3-92 159-238 (351)
126 COG0593 DnaA ATPase involved i 96.3 0.099 2.1E-06 42.5 11.5 101 23-124 209-316 (408)
127 PRK14948 DNA polymerase III su 96.3 0.084 1.8E-06 45.1 11.5 75 3-86 139-214 (620)
128 PF05673 DUF815: Protein of un 96.3 0.052 1.1E-06 41.3 9.2 85 4-92 126-238 (249)
129 PRK05707 DNA polymerase III su 96.3 0.029 6.2E-07 44.2 8.0 75 3-89 124-198 (328)
130 smart00350 MCM minichromosome 96.2 0.15 3.2E-06 42.4 12.5 103 22-124 342-507 (509)
131 COG2812 DnaX DNA polymerase II 96.2 0.062 1.3E-06 44.9 10.1 92 22-117 148-240 (515)
132 CHL00095 clpC Clp protease ATP 96.2 0.039 8.5E-07 48.4 9.0 68 22-90 306-383 (821)
133 PRK13341 recombination factor 96.0 0.13 2.9E-06 44.6 11.5 94 23-118 137-244 (725)
134 TIGR03015 pepcterm_ATPase puta 96.0 0.056 1.2E-06 40.5 8.2 83 39-122 178-267 (269)
135 CHL00081 chlI Mg-protoporyphyr 96.0 0.24 5.2E-06 39.5 11.9 99 22-120 186-321 (350)
136 PRK10787 DNA-binding ATP-depen 95.6 0.022 4.8E-07 49.8 5.3 44 22-67 464-507 (784)
137 COG0714 MoxR-like ATPases [Gen 95.3 0.055 1.2E-06 42.3 6.2 45 22-66 153-203 (329)
138 TIGR00764 lon_rel lon-related 95.2 0.13 2.8E-06 43.8 8.5 98 23-120 268-390 (608)
139 PRK14700 recombination factor 95.2 0.37 8.1E-06 37.6 10.1 91 22-118 7-112 (300)
140 TIGR02442 Cob-chelat-sub cobal 95.2 0.52 1.1E-05 40.4 11.8 98 22-120 168-303 (633)
141 TIGR01650 PD_CobS cobaltochela 95.1 0.2 4.3E-06 39.7 8.4 49 20-68 175-235 (327)
142 PRK05564 DNA polymerase III su 94.8 0.2 4.4E-06 38.8 7.9 74 3-88 111-184 (313)
143 PRK07471 DNA polymerase III su 94.7 0.23 5.1E-06 39.7 8.2 77 3-91 159-235 (365)
144 PF05496 RuvB_N: Holliday junc 94.6 0.048 1E-06 41.0 3.8 66 22-87 148-214 (233)
145 KOG0989|consensus 94.1 1 2.2E-05 35.6 10.2 78 3-93 147-225 (346)
146 PRK07399 DNA polymerase III su 94.1 0.34 7.5E-06 37.9 7.7 78 3-92 142-219 (314)
147 PRK07993 DNA polymerase III su 93.9 0.31 6.8E-06 38.5 7.2 74 3-89 126-199 (334)
148 PRK06090 DNA polymerase III su 93.5 0.28 6E-06 38.6 6.3 53 3-64 126-178 (319)
149 PRK08769 DNA polymerase III su 93.0 0.78 1.7E-05 36.1 8.1 76 3-92 131-206 (319)
150 COG2607 Predicted ATPase (AAA+ 93.0 0.96 2.1E-05 34.7 8.1 51 22-72 173-245 (287)
151 PRK11331 5-methylcytosine-spec 92.4 0.27 5.8E-06 40.6 5.0 30 22-52 324-357 (459)
152 cd00009 AAA The AAA+ (ATPases 92.0 0.44 9.6E-06 31.1 4.9 29 23-51 120-150 (151)
153 PRK06871 DNA polymerase III su 91.8 1.2 2.7E-05 35.1 7.9 73 3-88 125-197 (325)
154 PRK09862 putative ATP-dependen 91.6 4 8.6E-05 34.3 11.0 98 22-119 336-490 (506)
155 COG1239 ChlI Mg-chelatase subu 91.3 3.1 6.7E-05 34.1 9.7 46 21-66 185-232 (423)
156 TIGR02639 ClpA ATP-dependent C 91.3 0.59 1.3E-05 40.6 6.0 92 2-93 570-701 (731)
157 COG2255 RuvB Holliday junction 91.2 6 0.00013 31.1 10.8 67 22-88 150-217 (332)
158 COG1474 CDC6 Cdc6-related prot 91.1 1.6 3.4E-05 35.1 7.9 102 21-123 154-267 (366)
159 COG2256 MGS1 ATPase related to 90.3 5.7 0.00012 32.5 10.3 64 22-86 131-204 (436)
160 PRK13406 bchD magnesium chelat 90.1 8.2 0.00018 33.0 11.6 96 23-119 136-248 (584)
161 PRK08058 DNA polymerase III su 89.7 1 2.2E-05 35.4 5.7 53 3-64 128-180 (329)
162 KOG2035|consensus 89.5 6.2 0.00013 31.1 9.5 96 23-119 157-256 (351)
163 KOG2227|consensus 89.3 1.3 2.8E-05 36.9 6.0 73 20-93 286-366 (529)
164 PHA02244 ATPase-like protein 89.2 2.2 4.7E-05 34.5 7.2 39 22-62 220-269 (383)
165 PRK08699 DNA polymerase III su 89.1 0.88 1.9E-05 35.8 4.9 53 3-64 131-183 (325)
166 PRK11034 clpA ATP-dependent Cl 88.8 0.86 1.9E-05 40.0 5.1 92 2-93 574-705 (758)
167 PRK08485 DNA polymerase III su 88.3 2.2 4.8E-05 31.6 6.2 73 3-84 72-157 (206)
168 KOG2028|consensus 86.5 14 0.0003 30.4 10.2 97 22-119 249-366 (554)
169 smart00763 AAA_PrkA PrkA AAA d 85.0 1.6 3.5E-05 35.0 4.3 46 23-69 277-330 (361)
170 PRK07276 DNA polymerase III su 84.7 3.6 7.7E-05 32.0 6.0 50 3-62 122-171 (290)
171 TIGR00368 Mg chelatase-related 84.6 23 0.00049 29.7 11.3 96 22-118 337-496 (499)
172 KOG1514|consensus 84.6 7.9 0.00017 33.9 8.4 105 20-125 538-659 (767)
173 COG1224 TIP49 DNA helicase TIP 84.4 14 0.00031 30.1 9.3 96 25-121 322-432 (450)
174 PRK06581 DNA polymerase III su 84.3 4 8.7E-05 31.3 6.0 59 3-70 107-165 (263)
175 TIGR03346 chaperone_ClpB ATP-d 84.0 2 4.3E-05 38.1 4.8 72 23-94 708-816 (852)
176 TIGR01128 holA DNA polymerase 83.3 17 0.00038 27.4 12.4 74 44-119 102-176 (302)
177 PRK07132 DNA polymerase III su 82.6 4.5 9.8E-05 31.5 5.9 53 3-64 108-160 (299)
178 PRK10865 protein disaggregatio 82.6 2.9 6.3E-05 37.2 5.3 46 23-68 711-781 (857)
179 CHL00095 clpC Clp protease ATP 82.5 4 8.6E-05 36.1 6.1 56 38-93 704-771 (821)
180 COG0466 Lon ATP-dependent Lon 81.8 2.6 5.6E-05 36.9 4.5 44 22-66 465-508 (782)
181 TIGR03345 VI_ClpV1 type VI sec 81.4 12 0.00027 33.3 8.7 58 36-94 751-821 (852)
182 PRK13531 regulatory ATPase Rav 78.9 4.4 9.6E-05 33.9 4.9 43 23-65 147-193 (498)
183 KOG2004|consensus 77.0 4.6 9.9E-05 35.6 4.6 44 22-66 553-596 (906)
184 PF13177 DNA_pol3_delta2: DNA 76.8 3.9 8.3E-05 28.7 3.5 36 3-46 120-155 (162)
185 PTZ00111 DNA replication licen 76.7 59 0.0013 29.5 12.2 40 22-61 599-652 (915)
186 KOG1942|consensus 74.5 30 0.00064 27.7 8.0 86 33-119 348-436 (456)
187 PF05621 TniB: Bacterial TniB 73.8 28 0.00061 27.4 7.8 110 4-117 167-285 (302)
188 PF00493 MCM: MCM2/3/5 family 73.2 4.1 8.9E-05 32.0 3.2 46 23-68 164-223 (331)
189 COG1067 LonB Predicted ATP-dep 72.2 52 0.0011 28.6 9.7 98 23-120 276-398 (647)
190 smart00382 AAA ATPases associa 71.0 6.9 0.00015 24.9 3.5 31 23-53 116-147 (148)
191 PRK05818 DNA polymerase III su 70.7 14 0.0003 28.5 5.4 33 20-53 115-147 (261)
192 COG0542 clpA ATP-binding subun 69.7 13 0.00028 33.0 5.6 93 1-93 609-744 (786)
193 PRK13765 ATP-dependent proteas 68.3 35 0.00076 29.6 7.9 96 23-118 277-397 (637)
194 PRK05574 holA DNA polymerase I 68.2 52 0.0011 25.3 12.3 71 44-119 137-211 (340)
195 PF01637 Arch_ATPase: Archaeal 67.5 6.5 0.00014 28.0 3.0 48 40-88 179-228 (234)
196 COG3267 ExeA Type II secretory 66.9 57 0.0012 25.2 8.1 90 23-113 166-265 (269)
197 COG0470 HolB ATPase involved i 66.8 16 0.00036 27.7 5.3 42 21-63 137-178 (325)
198 PRK06585 holA DNA polymerase I 65.5 62 0.0014 25.1 12.2 73 46-119 135-208 (343)
199 TIGR00382 clpX endopeptidase C 64.0 23 0.00049 29.0 5.8 59 36-94 301-375 (413)
200 KOG2228|consensus 62.6 15 0.00032 29.8 4.3 47 20-66 168-219 (408)
201 KOG2680|consensus 61.6 85 0.0018 25.3 9.8 86 33-119 339-427 (454)
202 PRK07452 DNA polymerase III su 59.9 78 0.0017 24.4 12.1 94 23-119 95-197 (326)
203 PRK05917 DNA polymerase III su 57.8 41 0.00089 26.2 6.0 41 3-52 113-153 (290)
204 KOG1969|consensus 57.2 48 0.001 29.6 6.7 63 26-94 441-506 (877)
205 PF11264 ThylakoidFormat: Thyl 57.1 29 0.00063 25.9 4.8 45 51-95 61-108 (216)
206 PF09707 Cas_Cas2CT1978: CRISP 56.1 27 0.00059 22.2 4.0 46 25-70 2-50 (86)
207 KOG0741|consensus 52.5 95 0.0021 27.0 7.5 97 21-121 639-738 (744)
208 PF07726 AAA_3: ATPase family 51.2 16 0.00035 25.2 2.5 22 23-44 103-129 (131)
209 PF06068 TIP49: TIP49 C-termin 49.8 31 0.00067 28.2 4.2 58 24-82 308-378 (398)
210 PRK11558 putative ssRNA endonu 49.2 48 0.001 21.6 4.4 48 23-70 2-52 (97)
211 PRK05201 hslU ATP-dependent pr 48.7 73 0.0016 26.5 6.3 41 22-62 300-344 (443)
212 PF12775 AAA_7: P-loop contain 48.2 23 0.00051 27.1 3.3 45 23-68 148-195 (272)
213 PRK05907 hypothetical protein; 47.8 1.3E+02 0.0029 23.5 10.3 72 48-119 129-201 (311)
214 COG1220 HslU ATP-dependent pro 47.0 73 0.0016 26.0 5.9 42 21-62 300-345 (444)
215 KOG0482|consensus 46.4 1E+02 0.0022 26.6 6.8 45 22-66 481-539 (721)
216 TIGR01818 ntrC nitrogen regula 46.3 1.6E+02 0.0034 23.8 8.4 92 23-117 269-380 (463)
217 PF12846 AAA_10: AAA-like doma 45.6 32 0.00069 25.5 3.6 38 22-59 252-294 (304)
218 TIGR01873 cas_CT1978 CRISPR-as 45.2 48 0.001 21.2 3.8 44 25-68 2-48 (87)
219 PF09336 Vps4_C: Vps4 C termin 44.4 18 0.00038 21.4 1.6 17 108-124 29-45 (62)
220 COG0542 clpA ATP-binding subun 44.3 28 0.0006 31.0 3.4 46 23-69 299-349 (786)
221 PF00931 NB-ARC: NB-ARC domain 43.6 67 0.0014 23.9 5.1 68 23-93 129-200 (287)
222 PF08542 Rep_fac_C: Replicatio 43.2 20 0.00044 22.0 1.9 40 52-94 2-42 (89)
223 PLN03060 inositol phosphatase- 42.9 53 0.0011 24.4 4.3 45 51-95 64-111 (206)
224 TIGR02915 PEP_resp_reg putativ 42.8 1.8E+02 0.0038 23.4 8.4 45 22-67 273-328 (445)
225 PF06144 DNA_pol3_delta: DNA p 42.1 1.1E+02 0.0024 20.8 5.9 61 23-85 91-157 (172)
226 COG1241 MCM2 Predicted ATPase 41.5 21 0.00045 31.2 2.3 41 23-63 426-480 (682)
227 COG1221 PspF Transcriptional r 41.5 2E+02 0.0043 23.6 7.9 47 19-67 210-265 (403)
228 PRK05342 clpX ATP-dependent pr 41.3 1.1E+02 0.0024 24.9 6.4 59 36-94 295-369 (412)
229 PRK11361 acetoacetate metaboli 40.8 1.9E+02 0.0041 23.2 8.0 44 23-67 278-332 (457)
230 PF03709 OKR_DC_1_N: Orn/Lys/A 40.8 27 0.00058 23.0 2.3 46 3-54 55-100 (115)
231 KOG2383|consensus 40.4 13 0.00028 30.7 0.8 14 23-36 224-238 (467)
232 PF13335 Mg_chelatase_2: Magne 39.6 1E+02 0.0022 19.7 5.2 38 81-118 54-93 (96)
233 PF11569 Homez: Homeodomain le 37.3 87 0.0019 18.3 4.2 34 62-96 13-46 (56)
234 COG1241 MCM2 Predicted ATPase 36.8 1.3E+02 0.0028 26.5 6.3 83 37-123 507-594 (682)
235 PF12944 DUF3840: Protein of u 36.7 14 0.0003 23.7 0.3 25 43-67 56-80 (104)
236 PLN03210 Resistant to P. syrin 35.5 3.5E+02 0.0076 25.1 9.2 61 24-89 325-390 (1153)
237 PF00046 Homeobox: Homeobox do 34.3 86 0.0019 17.3 3.9 37 57-94 10-46 (57)
238 cd00086 homeodomain Homeodomai 33.3 88 0.0019 17.1 4.8 38 56-94 9-46 (59)
239 PRK08487 DNA polymerase III su 32.3 2.4E+02 0.0052 21.9 11.2 69 47-119 129-198 (328)
240 TIGR02425 decarb_PcaC 4-carbox 31.1 1.7E+02 0.0036 19.7 6.3 73 31-103 26-103 (123)
241 PF03969 AFG1_ATPase: AFG1-lik 30.1 36 0.00079 27.3 1.8 14 23-36 158-172 (362)
242 PF01471 PG_binding_1: Putativ 29.6 1.1E+02 0.0023 17.0 4.2 27 106-132 22-48 (57)
243 COG1485 Predicted ATPase [Gene 29.1 32 0.00069 27.8 1.3 15 23-37 161-176 (367)
244 KOG1968|consensus 28.6 1.6E+02 0.0035 26.7 5.6 66 25-94 461-527 (871)
245 PF07424 TrbM: TrbM; InterPro 28.2 1.8E+02 0.0038 20.9 4.8 72 23-94 12-84 (165)
246 PF10414 CysG_dimeriser: Siroh 27.8 54 0.0012 18.8 1.9 22 46-67 15-36 (60)
247 PRK07914 hypothetical protein; 27.4 2.9E+02 0.0063 21.3 12.1 91 23-119 95-192 (320)
248 COG4909 PduC Propanediol dehyd 27.1 67 0.0015 26.2 2.8 57 37-93 58-114 (554)
249 TIGR02974 phageshock_pspF psp 26.2 91 0.002 24.5 3.4 46 22-67 133-188 (329)
250 PF08784 RPA_C: Replication pr 26.1 1.8E+02 0.0038 18.4 5.4 37 58-95 49-85 (102)
251 PRK07217 replication factor A; 26.1 38 0.00083 26.8 1.3 37 36-72 22-60 (311)
252 COG2874 FlaH Predicted ATPases 25.1 60 0.0013 24.6 2.1 34 2-43 144-177 (235)
253 TIGR02557 HpaP type III secret 24.2 85 0.0018 23.2 2.7 30 35-64 140-178 (201)
254 PF07724 AAA_2: AAA domain (Cd 23.9 88 0.0019 22.1 2.7 36 2-37 96-134 (171)
255 COG4030 Uncharacterized protei 23.9 3E+02 0.0064 21.3 5.6 45 50-95 136-180 (315)
256 PF09483 HpaP: Type III secret 23.7 90 0.0019 22.8 2.7 29 36-64 125-162 (185)
257 cd01080 NAD_bind_m-THF_DH_Cycl 23.7 1.1E+02 0.0023 21.8 3.1 51 25-83 90-140 (168)
258 PRK10820 DNA-binding transcrip 23.2 4.5E+02 0.0097 22.0 8.1 45 22-67 338-393 (520)
259 PLN00047 photosystem II biogen 23.2 2.2E+02 0.0047 22.3 4.8 44 51-94 117-163 (283)
260 PF01765 RRF: Ribosome recycli 22.9 1E+02 0.0022 21.7 2.9 21 46-66 80-100 (165)
261 PRK13266 Thf1-like protein; Re 22.7 2.5E+02 0.0054 21.2 5.0 44 51-94 66-112 (225)
262 TIGR00390 hslU ATP-dependent p 22.4 1.8E+02 0.004 24.2 4.6 41 22-62 298-342 (441)
263 TIGR03060 PS_II_psb29 photosys 21.6 2.7E+02 0.0059 20.8 5.0 45 51-95 66-113 (214)
264 TIGR01613 primase_Cterm phage/ 21.6 67 0.0014 24.7 1.9 28 23-51 172-202 (304)
265 PRK07369 dihydroorotase; Provi 21.5 4.4E+02 0.0096 21.3 7.3 82 35-118 264-356 (418)
266 PRK07066 3-hydroxybutyryl-CoA 21.5 4.1E+02 0.0088 20.9 6.6 38 82-119 184-221 (321)
267 PHA02577 2 DNA end protector p 21.4 1.3E+02 0.0028 21.8 3.1 74 40-117 60-157 (181)
268 PRK10365 transcriptional regul 21.4 4.2E+02 0.0092 21.0 6.7 44 23-68 274-329 (441)
269 KOG2804|consensus 21.3 1.7E+02 0.0038 23.3 4.0 57 30-93 134-193 (348)
270 PF04430 DUF498: Protein of un 21.2 1.5E+02 0.0033 19.1 3.3 32 20-51 52-84 (110)
271 PRK11608 pspF phage shock prot 21.0 2.4E+02 0.0052 22.0 4.9 44 23-66 141-194 (326)
272 PF05361 PP1_inhibitor: PKC-ac 21.0 1.8E+02 0.0039 20.4 3.7 36 51-86 81-116 (144)
273 PRK10263 DNA translocase FtsK; 20.7 2E+02 0.0043 27.5 4.8 43 21-63 1173-1217(1355)
274 PF13821 DUF4187: Domain of un 20.1 1.7E+02 0.0038 16.8 3.0 41 50-90 7-53 (55)
275 PF05707 Zot: Zonular occluden 20.1 70 0.0015 22.8 1.6 31 23-53 116-146 (193)
276 cd00520 RRF Ribosome recycling 20.1 1.2E+02 0.0026 21.8 2.8 20 47-66 95-114 (179)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-30 Score=199.45 Aligned_cols=115 Identities=30% Similarity=0.474 Sum_probs=108.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
-|||+|||||.+.+ +|-||+|||+|+.||||++| |||++|+||+||.++|.+||+.|.+++.+..++|++.|
T Consensus 276 leLL~qlDGFD~~~------nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~l 349 (406)
T COG1222 276 LELLNQLDGFDPRG------NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELL 349 (406)
T ss_pred HHHHHhccCCCCCC------CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHH
Confidence 48999999998876 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~ 123 (133)
|+.|+|+|||||+++|..+.+++ .++..++++||.+|.++.-+
T Consensus 350 a~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 350 ARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 99999999999999988888755 77889999999999886654
No 2
>KOG0730|consensus
Probab=99.96 E-value=6.1e-29 Score=204.07 Aligned_cols=118 Identities=30% Similarity=0.458 Sum_probs=110.3
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
|+|+||++|||+.... +|+||||||||+.||+|++| |||+.|+||+||.+.|.+||+.++++++++.++|+.
T Consensus 554 VlsqLLtEmDG~e~~k------~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~ 627 (693)
T KOG0730|consen 554 VLSQLLTEMDGLEALK------NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLE 627 (693)
T ss_pred HHHHHHHHcccccccC------cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHH
Confidence 5899999999999876 99999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHhhhhc
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKTFCG----KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~~~~----~~~~i~~~dl~~a~~~~~~s 124 (133)
.||+.|+|||||||..+|..++..+. ....+..+||++|++..+++
T Consensus 628 ~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 628 ELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 99999999999999998888877663 45689999999999988776
No 3
>KOG0738|consensus
Probab=99.94 E-value=3e-27 Score=185.30 Aligned_cols=124 Identities=35% Similarity=0.618 Sum_probs=108.9
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
++++||.||||+.... +...-|+|+||||.||+||+|++|||+++|+||+|+.++|..+++..++..+.+++++++.|
T Consensus 332 vKsELLvQmDG~~~t~--e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~l 409 (491)
T KOG0738|consen 332 VKSELLVQMDGVQGTL--ENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDL 409 (491)
T ss_pred HHHHHHHHhhcccccc--ccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHH
Confidence 5799999999998754 22445999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHhcC-------------------CCCCCHHHHHHHHHhhhhccc
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFCGK-------------------NSTPSQPKLLQAERPFRRSRV 126 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~~~-------------------~~~i~~~dl~~a~~~~~~s~~ 126 (133)
|++++||||+||.++|..+.+...+ ...++..||+.|++..++|..
T Consensus 410 ae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 410 AERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9999999999999887777663321 135889999999999888743
No 4
>KOG0733|consensus
Probab=99.93 E-value=8.5e-26 Score=184.73 Aligned_cols=118 Identities=26% Similarity=0.382 Sum_probs=102.1
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHh--cCCCCChhc
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILR--QVDLASDLD 76 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~--~~~~~~~~~ 76 (133)
||||||++|||+..+. +|+||||||||+.||||++| |||+.+++++|+.++|..||+.+.+ +.++++++|
T Consensus 631 vvNqLLtElDGl~~R~------gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd 704 (802)
T KOG0733|consen 631 VVNQLLTELDGLEERR------GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD 704 (802)
T ss_pred HHHHHHHHhccccccc------ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence 5899999999998876 99999999999999999999 9999999999999999999999999 788999999
Q ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHHhc---------C---------CCCCCHHHHHHHHHhhhhc
Q psy15623 77 LELVSDQLE--GNAVQQKVMKSYTKKTFCG---------K---------NSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 77 ~~~la~~t~--G~sgadi~~~~~~~~~~~~---------~---------~~~i~~~dl~~a~~~~~~s 124 (133)
++.||+.+. |||||||..++..+...+. + ...++..||.+|...+++|
T Consensus 705 l~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 705 LDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 999999887 9999999865554433221 1 1136778999998877765
No 5
>KOG0734|consensus
Probab=99.92 E-value=1.6e-25 Score=181.11 Aligned_cols=112 Identities=29% Similarity=0.480 Sum_probs=103.8
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+||||.+||||.++. +|+||||||+|+.||+|++| |||++|.+|.||...|.+||+.|+.+++++.++|+..
T Consensus 424 lNQLLvEmDGF~qNe------GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~i 497 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQNE------GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKI 497 (752)
T ss_pred HHHHHHHhcCcCcCC------ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhH
Confidence 689999999999987 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 80 VSDQLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 80 la~~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
||+-|.|||||||.++ .++..+...+...+++++|+.|-.
T Consensus 498 iARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 498 IARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKD 539 (752)
T ss_pred hccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhh
Confidence 9999999999999874 455555667888999999998844
No 6
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=4.5e-25 Score=166.22 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=111.8
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
+||.||++|||+.++. +|+.|||||+|+.||||+.+||...|+|.+|+.++|..|++.+.+++|+.-+.++..+
T Consensus 238 iVNALLTelDgi~ene------GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~ 311 (368)
T COG1223 238 IVNALLTELDGIKENE------GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYL 311 (368)
T ss_pred HHHHHHHhccCcccCC------ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHH
Confidence 5899999999999877 9999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHcCCCCHHHHHH---HHHHHHHHhcCCCCCCHHHHHHHHHhhhhccccccc
Q psy15623 81 SDQLEGNAVQQKVM---KSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFT 130 (133)
Q Consensus 81 a~~t~G~sgadi~~---~~~~~~~~~~~~~~i~~~dl~~a~~~~~~s~~~~~~ 130 (133)
++.|.||||+||+. ..+.-.++..++..++.+|++.|+++.++++.-...
T Consensus 312 ~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~r~~r~~~p~ 364 (368)
T COG1223 312 AAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKERKRRAPRPK 364 (368)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhhccccCCCcc
Confidence 99999999999985 355556677888899999999999987666544333
No 7
>KOG0652|consensus
Probab=99.90 E-value=6.8e-24 Score=160.37 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=107.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
-+||+++|||.+.. +|-||+|||+.+-||||++| |+|++|+||.|+.++|..|++.|.+++.+..++++++|
T Consensus 296 LELLNQLDGFss~~------~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeEL 369 (424)
T KOG0652|consen 296 LELLNQLDGFSSDD------RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEEL 369 (424)
T ss_pred HHHHHhhcCCCCcc------ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHH
Confidence 37999999999877 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhcc
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~ 125 (133)
|+.|++|.|+++++.|..+.+ +..+...++.+||.+++-+.+..+
T Consensus 370 aRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 370 ARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred hhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence 999999999999987666655 457778999999999988776543
No 8
>KOG0737|consensus
Probab=99.90 E-value=1e-23 Score=164.23 Aligned_cols=97 Identities=31% Similarity=0.575 Sum_probs=90.8
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
+++||...|||+.++. +.+|+|+||||+|.+||.|++||+.++++|++|+.++|..||+.++++.++++++|+..+
T Consensus 213 mK~eFM~~WDGl~s~~----~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~i 288 (386)
T KOG0737|consen 213 MKNEFMALWDGLSSKD----SERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEI 288 (386)
T ss_pred HHHHHHHHhccccCCC----CceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHH
Confidence 4789999999999876 557999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~ 101 (133)
|.+|+||||+||+.+|..++.
T Consensus 289 A~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 289 AQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred HHhcCCCcHHHHHHHHHHHhH
Confidence 999999999999987776654
No 9
>KOG0733|consensus
Probab=99.90 E-value=1.2e-23 Score=172.20 Aligned_cols=101 Identities=25% Similarity=0.450 Sum_probs=92.4
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
||+|||+.||++.... ..+.+|+||||||||+.||||++| |||+.|.++.|+..+|.+||+..++++.++.++|+.
T Consensus 309 iVaQLlt~mD~l~~~~--~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~ 386 (802)
T KOG0733|consen 309 IVAQLLTSMDELSNEK--TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFK 386 (802)
T ss_pred HHHHHHHhhhcccccc--cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHH
Confidence 5899999999998754 335689999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKTFC 103 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~~~ 103 (133)
+||+.|+||+||||.++|..++..+
T Consensus 387 qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 387 QLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred HHHhcCCCccchhHHHHHHHHHHHH
Confidence 9999999999999998777766543
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.90 E-value=7.4e-23 Score=163.43 Aligned_cols=117 Identities=23% Similarity=0.311 Sum_probs=105.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+.+||++||++.... +|+||+|||+|+.||||++| |||++|+|++|+.++|..||+.++.+.++..++++..
T Consensus 269 l~~LL~~ld~~~~~~------~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~ 342 (398)
T PTZ00454 269 LLELLNQMDGFDQTT------NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLED 342 (398)
T ss_pred HHHHHHHhhccCCCC------CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHH
Confidence 568999999997765 89999999999999999999 9999999999999999999999999999889999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s 124 (133)
+|+.|+||||+||.++|..+.+.+ .++..++.+||.+|++...+.
T Consensus 343 la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 343 FVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 999999999999998877776644 566789999999999876443
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=1.2e-22 Score=172.65 Aligned_cols=118 Identities=29% Similarity=0.436 Sum_probs=104.1
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
++++||++||++.... +|+||+|||+|+.||||++| |||++|++|+|+.++|.+||+.+.++.++..++++.
T Consensus 574 ~~~~lL~~ldg~~~~~------~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~ 647 (733)
T TIGR01243 574 IVNQLLTEMDGIQELS------NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLE 647 (733)
T ss_pred HHHHHHHHhhcccCCC------CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHH
Confidence 4689999999998765 89999999999999999999 999999999999999999999999999998999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhc--------------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKTFCG--------------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~~~~--------------------~~~~i~~~dl~~a~~~~~~s 124 (133)
.||+.|+||||+||..+|..+...+. ....++.+||.+|++..++|
T Consensus 648 ~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 648 ELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 99999999999999876655544221 12368999999999988876
No 12
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.2e-23 Score=168.47 Aligned_cols=112 Identities=24% Similarity=0.370 Sum_probs=105.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+||+|.+|||+.++. +|++|++||||+-+|||++| |||+.|.++.||...|++|++.|+++.++..++|+..
T Consensus 273 LNQlLvEmDGF~~~~------gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~ 346 (596)
T COG0465 273 LNQLLVEMDGFGGNE------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK 346 (596)
T ss_pred HHHHHhhhccCCCCC------ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH
Confidence 689999999999766 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHH--HHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 80 VSDQLEGNAVQQKVMKS--YTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 80 la~~t~G~sgadi~~~~--~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+|+.|+||||+||.+++ ++..+...+...++..|+.+|..
T Consensus 347 iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 347 IARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred HhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHH
Confidence 99999999999999754 66666778889999999999976
No 13
>KOG0731|consensus
Probab=99.88 E-value=2.1e-22 Score=169.04 Aligned_cols=112 Identities=26% Similarity=0.361 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE 78 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~ 78 (133)
.||||.+|||+.+++ +|+|+|+||+|+-||+|++| |||++|++++|+..+|.+|++.|+++.+++ .++++.
T Consensus 435 lnQll~emDgf~~~~------~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~ 508 (774)
T KOG0731|consen 435 LNQLLVEMDGFETSK------GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLS 508 (774)
T ss_pred HHHHHHHhcCCcCCC------cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHH
Confidence 589999999998876 99999999999999999999 999999999999999999999999998885 889999
Q ss_pred HHHHHcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 79 LVSDQLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
.||.+|+||||+||+++ .++..+.+.+...++..||+.|++
T Consensus 509 ~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 509 KLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 99999999999999975 444555667789999999999987
No 14
>KOG0728|consensus
Probab=99.88 E-value=1.4e-22 Score=152.50 Aligned_cols=113 Identities=22% Similarity=0.369 Sum_probs=105.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
-+||+++|||.... ++-||.|||+.+-||||++| |.|++|+||+|+.++|.+||+.+.+++++...+|+..+
T Consensus 272 lellnqldgfeatk------nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~ki 345 (404)
T KOG0728|consen 272 LELLNQLDGFEATK------NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKI 345 (404)
T ss_pred HHHHHhcccccccc------ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHH
Confidence 37999999999877 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~ 121 (133)
|++..|.||++++..|..+.+.+ +.+..+|++||+-|..+.
T Consensus 346 aekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 346 AEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred HHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 99999999999999888887755 667789999999997643
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.6e-22 Score=163.85 Aligned_cols=118 Identities=29% Similarity=0.464 Sum_probs=105.6
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCC--CCChhc
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVD--LASDLD 76 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~--~~~~~~ 76 (133)
++++||++||++.... +|+||+|||+||.||+|++| |||++++|++||.++|.+||+.++++.. +..+++
T Consensus 362 ~~~~lL~~~d~~e~~~------~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~ 435 (494)
T COG0464 362 VVGQLLTELDGIEKAE------GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVD 435 (494)
T ss_pred HHHHHHHHhcCCCccC------ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhh
Confidence 4799999999999876 89999999999999999999 9999999999999999999999998543 457899
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHh--cC-CCCCCHHHHHHHHHhhhhc
Q psy15623 77 LELVSDQLEGNAVQQKVMKSYTKKTFC--GK-NSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 77 ~~~la~~t~G~sgadi~~~~~~~~~~~--~~-~~~i~~~dl~~a~~~~~~s 124 (133)
+..+++.|+||||+||..++..+.... .. ...++++||..|++..+++
T Consensus 436 ~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 436 LEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 999999999999999998776666644 33 5589999999999998776
No 16
>KOG0736|consensus
Probab=99.87 E-value=2.7e-22 Score=167.44 Aligned_cols=121 Identities=21% Similarity=0.347 Sum_probs=104.2
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCC-CHHHHHHHHHHHHhcCCCCChhcH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLP-SSSGRQELLRLILRQVDLASDLDL 77 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P-~~~~R~~il~~~~~~~~~~~~~~~ 77 (133)
||+|||.+|||+... +++.||||||||||+.||||++| |||+-++++++ +.+.+..+|+...+++.++.++|+
T Consensus 793 VVSQLLAELDgls~~----~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL 868 (953)
T KOG0736|consen 793 VVSQLLAELDGLSDS----SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL 868 (953)
T ss_pred HHHHHHHHhhcccCC----CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH
Confidence 689999999999853 25699999999999999999999 99999999988 789999999999999999999999
Q ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHHh---------cC----------CCCCCHHHHHHHHHhhhhcc
Q psy15623 78 ELVSDQL-EGNAVQQKVMKSYTKKTFC---------GK----------NSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 78 ~~la~~t-~G~sgadi~~~~~~~~~~~---------~~----------~~~i~~~dl~~a~~~~~~s~ 125 (133)
.+||+++ ..|||||+-++|..+...+ .+ .-.++++||.++.+++++|.
T Consensus 869 ~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 869 VEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 9999999 5899999976555443211 11 12678999999999998874
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.87 E-value=2.4e-21 Score=154.39 Aligned_cols=118 Identities=29% Similarity=0.420 Sum_probs=105.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+.+||.++|++.... +|+||+|||+++.||+|++| |||++|+|++|+.++|.+||+.++++.++..++++..
T Consensus 255 l~~lL~~ld~~~~~~------~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~ 328 (389)
T PRK03992 255 LMQLLAEMDGFDPRG------NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEE 328 (389)
T ss_pred HHHHHHhccccCCCC------CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHH
Confidence 457888899887655 89999999999999999999 9999999999999999999999999998888899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhcc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s~ 125 (133)
+|..|+||||+||..+|..+...+ .+...++.+||.+|++..+++.
T Consensus 329 la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 329 LAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 999999999999998777666644 5667899999999999887653
No 18
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=156.99 Aligned_cols=126 Identities=20% Similarity=0.271 Sum_probs=109.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+.+||.+||++.... +|.||+|||+++.||+|++| |||++|+|++|+.++|.+||+.++.++.+..++++..
T Consensus 307 ll~LL~~Ldg~~~~~------~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~ 380 (438)
T PTZ00361 307 MLELLNQLDGFDSRG------DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEE 380 (438)
T ss_pred HHHHHHHHhhhcccC------CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHH
Confidence 457899999987655 89999999999999999998 9999999999999999999999999998888999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhhhh-cccccccCCC
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPFRR-SRVLLFTGYY 133 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~~~-s~~~~~~~~~ 133 (133)
++..|+||||+||.++|..+... ..++..++.+||..|++.... .+.-...|+|
T Consensus 381 la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~~~~~~~ 437 (438)
T PTZ00361 381 FIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPEGLY 437 (438)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccCCCcccc
Confidence 99999999999999887766554 456678999999999987644 3444555665
No 19
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.87 E-value=1.8e-21 Score=163.38 Aligned_cols=114 Identities=25% Similarity=0.431 Sum_probs=102.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+|+||.+||++.++. +|+||+|||+|+.||||++| |||++|+|++|+.++|.+||+.++++.++..++++..
T Consensus 275 ln~lL~~mdg~~~~~------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~ 348 (644)
T PRK10733 275 LNQMLVEMDGFEGNE------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI 348 (644)
T ss_pred HHHHHHhhhcccCCC------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHH
Confidence 689999999998766 89999999999999999999 9999999999999999999999999999888999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~ 121 (133)
+|+.|.||||+||.+++..++. ...+...++..|+..|....
T Consensus 349 la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 349 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 9999999999999976555544 44677789999999997644
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=2.2e-21 Score=158.29 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=98.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC--ChhcH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA--SDLDL 77 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~--~~~~~ 77 (133)
+++||++|+.-. .+|+||+|||+|+.||||++| |||++++|++|+.++|.+||+.++++.... .+.++
T Consensus 347 l~~lL~~l~~~~--------~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl 418 (489)
T CHL00195 347 LATFITWLSEKK--------SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI 418 (489)
T ss_pred HHHHHHHHhcCC--------CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH
Confidence 567888887532 389999999999999999999 999999999999999999999999876432 57899
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhhhcc
Q psy15623 78 ELVSDQLEGNAVQQKVMKSYTKKTFC-GKNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~~~~~~~~~-~~~~~i~~~dl~~a~~~~~~s~ 125 (133)
+.||+.|+||||+||..++..+...+ .....++.+||..|++.+.|+-
T Consensus 419 ~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 419 KKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCc
Confidence 99999999999999987655554433 4456799999999999888863
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.86 E-value=6.5e-21 Score=155.88 Aligned_cols=114 Identities=25% Similarity=0.395 Sum_probs=102.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||.+||++.++. +|+||+|||+|+.||||++| |||++|++++|+.++|.+||+.++++.+...++++..
T Consensus 178 ~~~lL~~~d~~~~~~------~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~ 251 (495)
T TIGR01241 178 LNQLLVEMDGFGTNT------GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKA 251 (495)
T ss_pred HHHHHhhhccccCCC------CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHH
Confidence 688999999998765 89999999999999999999 9999999999999999999999999888778899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~ 121 (133)
+|+.|.||||+||..++..+.. ...+...++.+|+.+|+...
T Consensus 252 la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 252 VARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999999987665543 34566789999999998755
No 22
>KOG0735|consensus
Probab=99.85 E-value=3.8e-21 Score=159.72 Aligned_cols=93 Identities=31% Similarity=0.494 Sum_probs=87.3
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
||||||++|||..+-. +|.|+|||.||+.||||++| |+|+.++.++|+..+|.+|++.+......+.++|++
T Consensus 787 VVNQlLTelDG~Egl~------GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~ 860 (952)
T KOG0735|consen 787 VVNQLLTELDGAEGLD------GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLE 860 (952)
T ss_pred HHHHHHHhhccccccc------eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchH
Confidence 5899999999999876 99999999999999999999 999999999999999999999999988889999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHH
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTK 99 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~ 99 (133)
.+|..|+|||||||..++..+
T Consensus 861 ~~a~~T~g~tgADlq~ll~~A 881 (952)
T KOG0735|consen 861 CLAQKTDGFTGADLQSLLYNA 881 (952)
T ss_pred HHhhhcCCCchhhHHHHHHHH
Confidence 999999999999998654433
No 23
>KOG0726|consensus
Probab=99.85 E-value=1.2e-21 Score=149.78 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=110.3
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVS 81 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 81 (133)
+||+++|||.+++ .|-||.|||+.+.||||++| |.|++|+|++||...++.||..|..++.+..+++++.+.
T Consensus 311 ELLNQldGFdsrg------DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li 384 (440)
T KOG0726|consen 311 ELLNQLDGFDSRG------DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELI 384 (440)
T ss_pred HHHHhccCccccC------CeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHh
Confidence 7999999999877 99999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh-cccccccCCC
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR-SRVLLFTGYY 133 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~-s~~~~~~~~~ 133 (133)
..-+.+|||||+++|..+..++ +.+..++.+||..|.+..-. .+-....|||
T Consensus 385 ~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g~~egly 439 (440)
T KOG0726|consen 385 MTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEGVPEGLY 439 (440)
T ss_pred hcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccCCccccc
Confidence 9999999999999988876654 66778999999999775433 2444455666
No 24
>KOG0739|consensus
Probab=99.83 E-value=2.4e-21 Score=148.45 Aligned_cols=88 Identities=33% Similarity=0.686 Sum_probs=81.7
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLEL 79 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~ 79 (133)
|+++||.||.|+...+ .+|+|+||||-||.||.|++|||+++|+||+|+..+|..+++.++...+.. .+.|+..
T Consensus 252 IKTEfLVQMqGVG~d~-----~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~e 326 (439)
T KOG0739|consen 252 IKTEFLVQMQGVGNDN-----DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKE 326 (439)
T ss_pred HHHHHHHhhhccccCC-----CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHH
Confidence 5789999999998653 699999999999999999999999999999999999999999999887665 7889999
Q ss_pred HHHHcCCCCHHHHH
Q psy15623 80 VSDQLEGNAVQQKV 93 (133)
Q Consensus 80 la~~t~G~sgadi~ 93 (133)
|+++|+||||+||.
T Consensus 327 L~~kTeGySGsDis 340 (439)
T KOG0739|consen 327 LARKTEGYSGSDIS 340 (439)
T ss_pred HHhhcCCCCcCceE
Confidence 99999999999993
No 25
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.83 E-value=8.9e-20 Score=163.18 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHH--hcCCCCC-hhc
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLIL--RQVDLAS-DLD 76 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~--~~~~~~~-~~~ 76 (133)
+++||++|||..... ...+|+||||||+|+.||||++| |||+.|+|++|+..+|++++..++ ++.++.. .++
T Consensus 1754 L~qLLneLDg~~~~~---s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vd 1830 (2281)
T CHL00206 1754 LGLLVNSLSRDCERC---STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFH 1830 (2281)
T ss_pred HHHHHHHhccccccC---CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCccccc
Confidence 688999999875321 13489999999999999999999 999999999999999999998754 4555553 368
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHH
Q psy15623 77 LELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 77 ~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~ 119 (133)
++.+|+.|.|||||||++++..|+. ...+...++..++..|+.
T Consensus 1831 l~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1831 TNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9999999999999999976555554 456778999999999976
No 26
>KOG0727|consensus
Probab=99.83 E-value=4.3e-20 Score=139.31 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=105.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+-+||++|||+..+. +|-||+|||+.+.||||++| |+|++|+||+|+..+++-+|.....++.+..++|++.
T Consensus 279 l~ellnqmdgfdq~~------nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 279 LIELLNQMDGFDQTT------NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred HHHHHHhccCcCccc------ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 458999999998877 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~ 121 (133)
+..+-+..||+||.++|..+.+++ .++..+...||+++-+..
T Consensus 353 ~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 353 LVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTV 396 (408)
T ss_pred HhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhh
Confidence 999999999999999988887755 678899999999997643
No 27
>KOG0740|consensus
Probab=99.82 E-value=4.2e-20 Score=147.44 Aligned_cols=120 Identities=29% Similarity=0.483 Sum_probs=101.9
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLEL 79 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~ 79 (133)
++++||.++++..+.. .++|+||||||+||.+|.|++|||.++++||+|+.++|..+|+.++.+.+.. .+.+++.
T Consensus 272 ~ktefLiq~~~~~s~~----~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~ 347 (428)
T KOG0740|consen 272 LKTEFLLQFDGKNSAP----DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISL 347 (428)
T ss_pred hhhHHHhhhccccCCC----CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 4689999999998764 6699999999999999999999999999999999999999999999877444 6789999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH---------------hcCCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTF---------------CGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~---------------~~~~~~i~~~dl~~a~~~~~~s 124 (133)
||+.|+||||+||..+|..+.+- ...-+.++..|+..+.+.++++
T Consensus 348 l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 348 LAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred HHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 99999999999998877766541 1223467888888888777665
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.82 E-value=2.4e-19 Score=141.61 Aligned_cols=114 Identities=28% Similarity=0.438 Sum_probs=100.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+.++|.++|++...+ +|+||+|||+++.+|++++| |||+.|+|++|+.++|.+||+.++.+..+..++++..
T Consensus 246 l~~ll~~ld~~~~~~------~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~ 319 (364)
T TIGR01242 246 LMQLLAELDGFDPRG------NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEA 319 (364)
T ss_pred HHHHHHHhhCCCCCC------CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHH
Confidence 356788888886654 89999999999999999999 9999999999999999999999999988887899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~ 121 (133)
+++.|+||||+||.+++..+.+. ..++..++.+||.+|++.+
T Consensus 320 la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 320 IAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999999876666554 4667789999999998753
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.82 E-value=1.1e-19 Score=152.27 Aligned_cols=114 Identities=26% Similarity=0.379 Sum_probs=101.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||.+||++..+. +|+||+|||+|+.+|+|++| |||++|++++|+.++|.+||+.++++.+...++++..
T Consensus 306 L~~LL~~~dg~~~~~------~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~ 379 (638)
T CHL00176 306 LNQLLTEMDGFKGNK------GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLEL 379 (638)
T ss_pred HHHHHhhhccccCCC------CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHH
Confidence 578999999998765 89999999999999999999 9999999999999999999999999887788899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHH--HHhcCCCCCCHHHHHHHHHhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKK--TFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~--~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+|+.|.||||+||.+++..++ +...+...++.+|+.+|+..+
T Consensus 380 lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 380 IARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 999999999999997655443 344666789999999998754
No 30
>KOG0741|consensus
Probab=99.81 E-value=5.2e-21 Score=155.05 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=102.6
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcC----CCCCh
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQV----DLASD 74 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~----~~~~~ 74 (133)
||||||..|||+.+-. +++|||.|||++.||+|++| ||+-.+++.+||++.|.+|++.|.+++ .++.+
T Consensus 353 VVNQLLsKmDGVeqLN------NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~d 426 (744)
T KOG0741|consen 353 VVNQLLSKMDGVEQLN------NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSAD 426 (744)
T ss_pred HHHHHHHhcccHHhhh------cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCC
Confidence 6899999999999876 99999999999999999999 999999999999999999999999764 45689
Q ss_pred hcHHHHHHHcCCCCHHHHHHHHHHHHHHhcC-----------------CCCCCHHHHHHHHHhhhhc
Q psy15623 75 LDLELVSDQLEGNAVQQKVMKSYTKKTFCGK-----------------NSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 75 ~~~~~la~~t~G~sgadi~~~~~~~~~~~~~-----------------~~~i~~~dl~~a~~~~~~s 124 (133)
+|+++||..|..||||+|..+..++...+.+ .-.++..||..|+.+++|.
T Consensus 427 Vdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 427 VDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred cCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 9999999999999999998665555443211 2367899999999988775
No 31
>KOG0730|consensus
Probab=99.81 E-value=1.3e-19 Score=149.42 Aligned_cols=115 Identities=25% Similarity=0.415 Sum_probs=104.0
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh-ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR-RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r-Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
++++|++.||++.+.. +|+||++||+|+.|||++.| |||+.++++.|+..+|.+|++.+.++++..+++++..
T Consensus 304 v~sqlltL~dg~~~~~------~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~ 377 (693)
T KOG0730|consen 304 VVSQLLTLLDGLKPDA------KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLED 377 (693)
T ss_pred HHHHHHHHHhhCcCcC------cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHH
Confidence 4789999999998765 99999999999999999999 9999999999999999999999999999888899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
+|..|+||+|+||..+|..+...+..+ +.+++..|....++|
T Consensus 378 iA~~thGyvGaDL~~l~~ea~~~~~r~---~~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 378 IAVSTHGYVGADLAALCREASLQATRR---TLEIFQEALMGIRPS 419 (693)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhcCCch
Confidence 999999999999998887776655444 788888888777665
No 32
>KOG0729|consensus
Probab=99.81 E-value=2.9e-20 Score=141.09 Aligned_cols=113 Identities=22% Similarity=0.394 Sum_probs=104.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
-+|++++|||..++ ++-|+.|||+|+.||||++| |+|++++|.+|+.+.|..||+.|.+.+.++.++-++-|
T Consensus 302 leli~qldgfdprg------nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ell 375 (435)
T KOG0729|consen 302 LELINQLDGFDPRG------NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELL 375 (435)
T ss_pred HHHHHhccCCCCCC------CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHH
Confidence 37899999998766 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~ 121 (133)
|+.|+.-+|++|+..|..+.+.+ ..+...+..||+.|+.+.
T Consensus 376 arlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kv 418 (435)
T KOG0729|consen 376 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKV 418 (435)
T ss_pred HhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999988888755 667789999999997644
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=8.2e-18 Score=137.75 Aligned_cols=122 Identities=24% Similarity=0.293 Sum_probs=94.6
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhc-CCCC-----
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQ-VDLA----- 72 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~-~~~~----- 72 (133)
++++||++||++.+.+ +|+||+|||+|+.||||++| |||.+|+|++|+.++|.+||+.++.+ .++.
T Consensus 317 il~~LL~~LDgl~~~~------~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~ 390 (512)
T TIGR03689 317 VVPQLLSELDGVESLD------NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAE 390 (512)
T ss_pred HHHHHHHHhcccccCC------ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHH
Confidence 3689999999998765 89999999999999999999 99999999999999999999999864 3441
Q ss_pred ----ChhcHHHHHHH-----------------------------cCCCCHHHHHHHHHHHHH------HhcCCCCCCHHH
Q psy15623 73 ----SDLDLELVSDQ-----------------------------LEGNAVQQKVMKSYTKKT------FCGKNSTPSQPK 113 (133)
Q Consensus 73 ----~~~~~~~la~~-----------------------------t~G~sgadi~~~~~~~~~------~~~~~~~i~~~d 113 (133)
...++..++++ ++.+||++|++++..+.. +..+...++.+|
T Consensus 391 ~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~ 470 (512)
T TIGR03689 391 FDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEH 470 (512)
T ss_pred hcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHH
Confidence 22334444433 467999999876554443 234556899999
Q ss_pred HHHHHH-hhhhccccc
Q psy15623 114 LLQAER-PFRRSRVLL 128 (133)
Q Consensus 114 l~~a~~-~~~~s~~~~ 128 (133)
+..|+. +|+.+.-+.
T Consensus 471 l~~a~~~e~~~~~~~~ 486 (512)
T TIGR03689 471 LLAAVLDEFRESEDLP 486 (512)
T ss_pred HHHHHHHhhcccccCC
Confidence 999977 566555443
No 34
>KOG0732|consensus
Probab=99.74 E-value=1.3e-17 Score=143.82 Aligned_cols=117 Identities=24% Similarity=0.343 Sum_probs=99.9
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDL 77 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 77 (133)
||++||..|||+.+++ +|+||||||||+.+|||++| |||+.++|++|+.++|..|+..+.++.... ...-+
T Consensus 390 IvSTLLaLmdGldsRg------qVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~ 463 (1080)
T KOG0732|consen 390 IVSTLLALMDGLDSRG------QVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELL 463 (1080)
T ss_pred HHHHHHHhccCCCCCC------ceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHH
Confidence 6899999999999987 99999999999999999999 999999999999999999999999876533 44567
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcCC------------------CCCCHHHHHHHHHhhhh
Q psy15623 78 ELVSDQLEGNAVQQKVMKSYTKKTFCGKN------------------STPSQPKLLQAERPFRR 123 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~~~~~~~~~~~~------------------~~i~~~dl~~a~~~~~~ 123 (133)
..+|+.|.||.|+||+++|..++.....+ ..+...||..|+...-+
T Consensus 464 ~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p 527 (1080)
T KOG0732|consen 464 LWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP 527 (1080)
T ss_pred HHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence 88999999999999999988887755332 24667788888765443
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=3.5e-16 Score=133.22 Aligned_cols=118 Identities=24% Similarity=0.385 Sum_probs=101.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++|++.||++.... +|+||++||+|+.||++++| ||++.+++++|+.++|.+||+.+.+..++..+.++..
T Consensus 299 ~~~Ll~~ld~l~~~~------~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~ 372 (733)
T TIGR01243 299 VAQLLTLMDGLKGRG------RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDK 372 (733)
T ss_pred HHHHHHHhhccccCC------CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHH
Confidence 578999999998765 89999999999999999999 9999999999999999999999999988888899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh---------------------cCCCCCCHHHHHHHHHhhhhcc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC---------------------GKNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~---------------------~~~~~i~~~dl~~a~~~~~~s~ 125 (133)
+++.|+||+|+||..++..+...+ .....++.+||..|++..+++.
T Consensus 373 la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 373 LAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 999999999999986555443321 0123578899999998887763
No 36
>KOG0651|consensus
Probab=99.67 E-value=1.8e-17 Score=127.49 Aligned_cols=115 Identities=23% Similarity=0.380 Sum_probs=102.4
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV 80 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 80 (133)
-+||++|||+.... +|-+|+|||+|+.||||++| |+|+++++|+|+...|..|++.+...+....++|.+.+
T Consensus 257 MeLlnqmdgfd~l~------rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eai 330 (388)
T KOG0651|consen 257 MELLNQMDGFDTLH------RVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAI 330 (388)
T ss_pred HHHHHhhccchhcc------cccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHH
Confidence 46889999998876 99999999999999999999 99999999999999999999999999888899999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~ 123 (133)
.+.++||.|+|+.+.|..+.++. .....+-.+|+..++.+...
T Consensus 331 vK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 331 LKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred HHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHH
Confidence 99999999999998888877755 44556778888888765543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.53 E-value=2.7e-14 Score=112.79 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHHhhCCCC------CCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCCh
Q psy15623 3 SELLCHMDGIAS------TTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASD 74 (133)
Q Consensus 3 ~~lL~~lD~~~~------~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~ 74 (133)
.+||+.||+... ..+.+...+|+||+|||+|+.||||++| |||+.+ .+|+.++|.+||+.++++..++ .
T Consensus 242 ~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~ 318 (413)
T PLN00020 242 GTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-R 318 (413)
T ss_pred HHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-H
Confidence 689999997521 0012345689999999999999999999 999975 5899999999999999998776 6
Q ss_pred hcHHHHHHHcCC----CCHHHH
Q psy15623 75 LDLELVSDQLEG----NAVQQK 92 (133)
Q Consensus 75 ~~~~~la~~t~G----~sgadi 92 (133)
.++..|++.++| |+||--
T Consensus 319 ~dv~~Lv~~f~gq~~Df~GAlr 340 (413)
T PLN00020 319 EDVVKLVDTFPGQPLDFFGALR 340 (413)
T ss_pred HHHHHHHHcCCCCCchhhhHHH
Confidence 889999999987 556543
No 38
>KOG0742|consensus
Probab=99.41 E-value=2e-12 Score=103.17 Aligned_cols=98 Identities=22% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC------------------------CC---
Q psy15623 20 PTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD------------------------LA--- 72 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~------------------------~~--- 72 (133)
.+..++++.|||+|.++|.|+-.|||..++||+|..|+|..+|..|+.++- +.
T Consensus 482 qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~ 561 (630)
T KOG0742|consen 482 QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFD 561 (630)
T ss_pred cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccch
Confidence 455899999999999999999999999999999999999999999986531 00
Q ss_pred ChhcHHHHHHHcCCCCHHHHHHHHHHHHH-HhcCCCCCCHHHHHHH
Q psy15623 73 SDLDLELVSDQLEGNAVQQKVMKSYTKKT-FCGKNSTPSQPKLLQA 117 (133)
Q Consensus 73 ~~~~~~~la~~t~G~sgadi~~~~~~~~~-~~~~~~~i~~~dl~~a 117 (133)
.+.-+.+.|+.|+||||++|..+.+...+ ..+....+-.+.++..
T Consensus 562 t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e 607 (630)
T KOG0742|consen 562 TGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDE 607 (630)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 11225778999999999999875544333 3344444444444433
No 39
>KOG0744|consensus
Probab=99.35 E-value=2.8e-12 Score=99.61 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=95.3
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC----------
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD---------- 70 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~---------- 70 (133)
+||.+|+|||.+++.+ +|++++|+|..+.||.|+..|-|.+.++++|+.++|.+|++.++..+-
T Consensus 281 vVNalLTQlDrlK~~~------NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~ 354 (423)
T KOG0744|consen 281 VVNALLTQLDRLKRYP------NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQR 354 (423)
T ss_pred HHHHHHHHHHHhccCC------CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeecc
Confidence 5899999999999987 999999999999999999999999999999999999999999885421
Q ss_pred ---CC-----ChhcHHHHHHHc-CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623 71 ---LA-----SDLDLELVSDQL-EGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERP 120 (133)
Q Consensus 71 ---~~-----~~~~~~~la~~t-~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~ 120 (133)
.. .+.....+.+.. .|.||+.|+.+-..+.+..-+...++.++|..|+.+
T Consensus 355 s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 355 STGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred chhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhccCCCccChHHHHHHHHH
Confidence 00 112233344444 899999999988888887778889999999999653
No 40
>KOG0743|consensus
Probab=99.14 E-value=2.1e-10 Score=92.14 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCC-CCChhcHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVD-LASDLDLE 78 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~~~ 78 (133)
.+.||+.+||+.+.. .+--++|.|||+++.||||++| |.|.+|+++..+.++-+.+++.|+.... ..---+++
T Consensus 321 lSGLLNfiDGlwSsc----g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie 396 (457)
T KOG0743|consen 321 LSGLLNFLDGLWSSC----GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIE 396 (457)
T ss_pred hHHhhhhhccccccC----CCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 468999999999865 3467899999999999999999 9999999999999999999999996532 11112344
Q ss_pred HHHHHcCCCCHHHHHH
Q psy15623 79 LVSDQLEGNAVQQKVM 94 (133)
Q Consensus 79 ~la~~t~G~sgadi~~ 94 (133)
.+.+.++ +||||+..
T Consensus 397 ~l~~~~~-~tPA~V~e 411 (457)
T KOG0743|consen 397 RLIEETE-VTPAQVAE 411 (457)
T ss_pred HHhhcCc-cCHHHHHH
Confidence 4444444 79999963
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-09 Score=87.91 Aligned_cols=117 Identities=23% Similarity=0.293 Sum_probs=100.9
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
++++++..||++. .. .|+++++||++..+|+++.+ ||++.++++.|+.+.|.+|+..+...+....+.+..
T Consensus 103 v~~~l~~~~d~~~-~~------~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~ 175 (494)
T COG0464 103 VVAQLLALMDGLK-RG------QVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGK 175 (494)
T ss_pred HHHHHHHhccccc-CC------ceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHH
Confidence 3688999999998 44 49999999999999999999 999999999999999999999999998888889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHh--------cCCCCCCHHHHHHHHHhhhhc
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKTFC--------GKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~~~--------~~~~~i~~~dl~~a~~~~~~s 124 (133)
.++..+.|++++|+..++..+.... .....++.+++.++++.+.++
T Consensus 176 ~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 176 TLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999999999999987664433322 224568899999999988775
No 42
>KOG0736|consensus
Probab=98.98 E-value=6.5e-09 Score=88.22 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=87.9
Q ss_pred CCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHH-
Q psy15623 21 TKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTK- 99 (133)
Q Consensus 21 ~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~- 99 (133)
.++++||++|+..+.+++.+.+-|-..|.++.|+.++|.+||+.++....+..++.+..+|.+|.|||.+|+.++.+-.
T Consensus 531 ~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s 610 (953)
T KOG0736|consen 531 CPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSS 610 (953)
T ss_pred CCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCch
Confidence 3599999999999999999999999999999999999999999999999999999999999999999999996421111
Q ss_pred -------HH--------------HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 100 -------KT--------------FCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 100 -------~~--------------~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
.. .+.....++.+||-.++...|++
T Consensus 611 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~ 656 (953)
T KOG0736|consen 611 LAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE 656 (953)
T ss_pred HHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHh
Confidence 10 11123578999999999877765
No 43
>KOG0735|consensus
Probab=98.54 E-value=4.6e-07 Score=76.79 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=83.9
Q ss_pred CcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYT 98 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~ 98 (133)
..+.|||+.+....|.|-+.. +|+.++.++.|+.++|.+||+.++++.... ...|+.-++.+|+||...|+.-....
T Consensus 540 ~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeR 619 (952)
T KOG0735|consen 540 RKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVER 619 (952)
T ss_pred cEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHH
Confidence 368999999999999999998 999999999999999999999999875433 34456669999999999999642111
Q ss_pred ------HHHHhcCCCCCCHHHHHHHHHhhhhcc
Q psy15623 99 ------KKTFCGKNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 99 ------~~~~~~~~~~i~~~dl~~a~~~~~~s~ 125 (133)
....+.+.+.++.++|.++++.|-+..
T Consensus 620 ai~~a~leris~~~klltke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 620 AIHEAFLERISNGPKLLTKELFEKSLKDFVPLA 652 (952)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHhcChHH
Confidence 123445556899999999999876653
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=98.40 E-value=7e-06 Score=63.36 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=72.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC--CCCh
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD--LASD 74 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~--~~~~ 74 (133)
+..|+..|+... .+++||+|++... .++|++.+||+.+|+|+.++.+++.+|++.++.+.. ++.+
T Consensus 148 ~~~L~~~me~~~--------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 148 IEILLQVMENQR--------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred HHHHHHHHhcCC--------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 356677777543 2678888876422 346999999999999999999999999999997643 3322
Q ss_pred hcHHHHH----HH--cCCCC-HHHHHHHHHH------HHHHhcCCCCCCHHHHHHH-HHhhhhccc
Q psy15623 75 LDLELVS----DQ--LEGNA-VQQKVMKSYT------KKTFCGKNSTPSQPKLLQA-ERPFRRSRV 126 (133)
Q Consensus 75 ~~~~~la----~~--t~G~s-gadi~~~~~~------~~~~~~~~~~i~~~dl~~a-~~~~~~s~~ 126 (133)
. ...+. +. .+.|. ++++++.... .+....+...++.+|+..- -+++.+|++
T Consensus 220 ~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~~~ 284 (287)
T CHL00181 220 A-EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKSRL 284 (287)
T ss_pred H-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHHHh
Confidence 2 22233 22 24566 8888753222 1222334445677776544 224444443
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.40 E-value=8.4e-06 Score=62.67 Aligned_cols=98 Identities=8% Similarity=0.041 Sum_probs=74.2
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK 100 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~ 100 (133)
+++++|++||++..+++++++||...+++++|+.+++.++++......... ++..++.|++.+.|.- +.+..++..+.
T Consensus 128 ~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 358999999999999999999999999999999999999999988754443 3445788999999854 55443333332
Q ss_pred HH--hcCCCCCCHHHHHHHHHh
Q psy15623 101 TF--CGKNSTPSQPKLLQAERP 120 (133)
Q Consensus 101 ~~--~~~~~~i~~~dl~~a~~~ 120 (133)
.. ..+...++.+.+.+++..
T Consensus 207 ~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 207 DFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHcCCCCcCHHHHHHHHHH
Confidence 22 234456888888888765
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.39 E-value=8.3e-06 Score=63.74 Aligned_cols=99 Identities=7% Similarity=0.046 Sum_probs=75.9
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
++++|++||++..+++++++||...++++.|+.+++.+|++......... ++.-+..|++.+.|.- +.+..++.....
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998765444 3445889999999854 544444433332
Q ss_pred H--hcCCCCCCHHHHHHHHHhhh
Q psy15623 102 F--CGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 102 ~--~~~~~~i~~~dl~~a~~~~~ 122 (133)
. ..+...++.+++..+++.+.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDMLG 251 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhC
Confidence 2 23456788888888876553
No 47
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.24 E-value=1.4e-05 Score=66.51 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=71.7
Q ss_pred EEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15623 24 IVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF 102 (133)
Q Consensus 24 v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~ 102 (133)
.++.+|||.|+.|+|++++|+. .+.++.++.+++.+|++..+++..+. ++..++.|+..+ ++++++.+++..+...
T Consensus 235 rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~ 311 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGI 311 (531)
T ss_pred EEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Confidence 5566677789999999999985 67888889999999999999876544 344466677655 4889998766655543
Q ss_pred h--cCCCCCCHHHHHHHHH
Q psy15623 103 C--GKNSTPSQPKLLQAER 119 (133)
Q Consensus 103 ~--~~~~~i~~~dl~~a~~ 119 (133)
+ .++..++.+|+.+.+.
T Consensus 312 A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 312 ALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HhhCCCcEEcHHHHHHHhC
Confidence 3 4556799999999975
No 48
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.20 E-value=2e-06 Score=57.57 Aligned_cols=46 Identities=33% Similarity=0.585 Sum_probs=39.8
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHH-hccccEEEcCC
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFL-RRLEKRIYVPL 52 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~-rRfd~~i~i~~ 52 (133)
+++|+..|+...... .++++|++||.++.+|++++ +||+.+|++|+
T Consensus 86 ~~~L~~~l~~~~~~~-----~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 86 LNQLLSLLDNPSSKN-----SRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHTTTTTS-----SSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cceeeeccccccccc-----ccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 578899999987642 47999999999999999999 89999999975
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.16 E-value=4.2e-05 Score=58.90 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC--CC---CCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-Chh
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFP--WN---IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDL 75 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~--~~---lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~ 75 (133)
.+.|+..|+.-. .+++||++++.. +. ++|++.+||+..|+||.++.+++..|++.++++.... ++.
T Consensus 147 ~~~Ll~~le~~~--------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~ 218 (284)
T TIGR02880 147 IEILLQVMENQR--------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE 218 (284)
T ss_pred HHHHHHHHhcCC--------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH
Confidence 356778887543 267888887642 32 4899999999999999999999999999999875432 222
Q ss_pred cHHHHHHHc------CCC-CHHHHHH
Q psy15623 76 DLELVSDQL------EGN-AVQQKVM 94 (133)
Q Consensus 76 ~~~~la~~t------~G~-sgadi~~ 94 (133)
-+..+.+.. +.+ .++++++
T Consensus 219 a~~~L~~~l~~~~~~~~~GN~R~lrn 244 (284)
T TIGR02880 219 AEEAFADYIALRRTQPHFANARSIRN 244 (284)
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 233343331 333 3677764
No 50
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.01 E-value=6.4e-05 Score=60.37 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=71.2
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDL 77 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 77 (133)
+|+..++.+...+ ..+||++++.|.. +++.+.+||.. .+++++|+.++|..|++..+...+.. ++..+
T Consensus 220 ~l~~~~n~~~~~~------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l 293 (405)
T TIGR00362 220 EFFHTFNALHENG------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL 293 (405)
T ss_pred HHHHHHHHHHHCC------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3555555554332 4566766666665 55788889975 79999999999999999999765444 45558
Q ss_pred HHHHHHcCCCCHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHh
Q psy15623 78 ELVSDQLEGNAVQQKVMKSYTK-KTFCGKNSTPSQPKLLQAERP 120 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~~~~~-~~~~~~~~~i~~~dl~~a~~~ 120 (133)
..||++..| +.++|....... .........++.+.+.++++.
T Consensus 294 ~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 294 EFIAKNIRS-NVRELEGALNRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 889988875 667775322111 112223344666666666553
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00022 Score=56.63 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-. +.+.+|.+|+.++.+.+.+.+|+ ..+++++|+.++..++++..++..+.. ++..+..++
T Consensus 137 naLLk~lEe~~--------~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia 207 (363)
T PRK14961 137 NALLKTLEEPP--------QHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA 207 (363)
T ss_pred HHHHHHHhcCC--------CCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666666533 26677777888899999999998 578999999999999999988765543 455678889
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+.+.| +++++.+.+..+... +...++.+++.+.+.
T Consensus 208 ~~s~G-~~R~al~~l~~~~~~--~~~~It~~~v~~~l~ 242 (363)
T PRK14961 208 YHAHG-SMRDALNLLEHAINL--GKGNINIKNVTDMLG 242 (363)
T ss_pred HHcCC-CHHHHHHHHHHHHHh--cCCCCCHHHHHHHHC
Confidence 88877 677765544333222 355688887776543
No 52
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.95 E-value=0.00018 Score=56.27 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=70.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..++... +.+++|.+||.++.+.+++.+|+. .+++++|+.++...+++..+++.+.. ++..+..++
T Consensus 135 ~~Ll~~le~~~--------~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 135 NALLKTLEEPP--------EHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHHHHHHhCCc--------cceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666665533 266778888889999999999985 78999999999999999988765543 345577788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +++.+...+....... ...++.+++.+.
T Consensus 206 ~~~~g-~~~~a~~~lekl~~~~--~~~it~~~v~~~ 238 (355)
T TIGR02397 206 RAADG-SLRDALSLLDQLISFG--NGNITYEDVNEL 238 (355)
T ss_pred HHcCC-ChHHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 88876 5555543222222222 234777666554
No 53
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00027 Score=58.65 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-. +.+++|.+|+.++.+++++.+|+ ..+++..++.++...+++..+++.+.. ++..+..|+
T Consensus 146 naLLk~LEepp--------~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 146 NALLKTLEEPP--------PHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHHHhhcC--------CCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666666432 36788888888999999999999 579999999999999999999776544 344578899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCG-KNSTPSQPKLLQAE 118 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~-~~~~i~~~dl~~a~ 118 (133)
+.++| +.+++.+....+..... ....++.+++.+.+
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~~~~~~~It~~~V~~ll 253 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMSAKSDNIISPQVINQML 253 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH
Confidence 99887 88888764443333333 33467777776654
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.93 E-value=5.7e-05 Score=65.32 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=42.9
Q ss_pred CcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15623 22 KSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA 72 (133)
Q Consensus 22 ~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~ 72 (133)
+.+.+|||||.++ ..|+|+.|||+ .|+++.|+.+++..||+.+..++...
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~ 368 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH 368 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence 3799999999865 58999999996 79999999999999999887654433
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.90 E-value=9.6e-05 Score=60.21 Aligned_cols=111 Identities=12% Similarity=0.148 Sum_probs=73.0
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDL 77 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 77 (133)
+|+..++.+...+ ..++|+++..|.. +++.+.+||.. .++++.|+.++|..|++..+...+.. ++.-+
T Consensus 232 ~l~~~~n~l~~~~------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l 305 (450)
T PRK00149 232 EFFHTFNALHEAG------KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL 305 (450)
T ss_pred HHHHHHHHHHHCC------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4555555554432 4466666666655 77898889974 89999999999999999999764433 34458
Q ss_pred HHHHHHcCCCCHHHHHHHH-HHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 78 ELVSDQLEGNAVQQKVMKS-YTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~~-~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+.||+.+.| +.++|.... ............++.+.+.++++..
T Consensus 306 ~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 306 EFIAKNITS-NVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCcCC-CHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 888988875 666665322 2222222233457777777776654
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.88 E-value=5.3e-05 Score=65.66 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=53.1
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh-----cCCCC------ChhcHHHHHHH-cCCCCH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-----QVDLA------SDLDLELVSDQ-LEGNAV 89 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~-----~~~~~------~~~~~~~la~~-t~G~sg 89 (133)
.++++|+|||.++.||+++++||+ .|+|+.|+.+++.+|++.++. ...+. ++..+..|++. |..+..
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred CCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 378999999999999999999996 799999999999999998872 11221 23345556653 344566
Q ss_pred HHHH
Q psy15623 90 QQKV 93 (133)
Q Consensus 90 adi~ 93 (133)
++|.
T Consensus 541 R~l~ 544 (775)
T TIGR00763 541 RNLE 544 (775)
T ss_pred hHHH
Confidence 6764
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00038 Score=57.29 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=72.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+... +.+++|++|+.|..+++++.+|+. .++|.+|+.++...+++..+...+.. ++..+..|+
T Consensus 135 ~~LLk~LE~p~--------~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia 205 (472)
T PRK14962 135 NALLKTLEEPP--------SHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIA 205 (472)
T ss_pred HHHHHHHHhCC--------CcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34566666433 267777788888999999999995 89999999999999999988654433 345578899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+.+.| +.+++.+......... + ..++.+++.+++.
T Consensus 206 ~~s~G-dlR~aln~Le~l~~~~-~-~~It~e~V~~~l~ 240 (472)
T PRK14962 206 KRASG-GLRDALTMLEQVWKFS-E-GKITLETVHEALG 240 (472)
T ss_pred HHhCC-CHHHHHHHHHHHHHhc-C-CCCCHHHHHHHHc
Confidence 88765 5555543332222222 2 2488888877654
No 58
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.80 E-value=0.0006 Score=53.57 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=67.3
Q ss_pred CcEEEEEeeCCCC---CCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhc-C---CCCChhcHH---HHHHHcCCCCHH
Q psy15623 22 KSIVILGASNFPW---NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQ-V---DLASDLDLE---LVSDQLEGNAVQ 90 (133)
Q Consensus 22 ~~v~vi~aTn~~~---~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~-~---~~~~~~~~~---~la~~t~G~sga 90 (133)
.++.+|++||.++ .+++.+.+||. ..++|++++.++..+|++..++. . .++ +.-++ .++..+.|....
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD-DGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhcCCHHH
Confidence 4799999999986 58889988886 78999999999999999998863 1 122 22223 344444554333
Q ss_pred HHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhh
Q psy15623 91 QKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 91 di~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~ 123 (133)
-+. .+..+.. ...+...++.+|+..|......
T Consensus 243 al~-~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 243 AID-LLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 322 3333322 3345678999999998775543
No 59
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.78 E-value=0.00046 Score=54.79 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=69.5
Q ss_pred cEEEEEeeCCCC---CCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhcC---CCCChhcHHHHHHHcCCCCHHHHH--
Q psy15623 23 SIVILGASNFPW---NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGNAVQQKV-- 93 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~~~~la~~t~G~sgadi~-- 93 (133)
++.+|+++|.++ .+++.+.+||. ..|+|++++.++..+|++..++.. ..-.+..++.+++.+.+.+| |+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~r~a 251 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG-DARVA 251 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC-cHHHH
Confidence 788999988764 57888888774 678999999999999999888542 11133446778888855333 443
Q ss_pred -HHHHHHH--HHhcCCCCCCHHHHHHHHHhhhh
Q psy15623 94 -MKSYTKK--TFCGKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 94 -~~~~~~~--~~~~~~~~i~~~dl~~a~~~~~~ 123 (133)
.++..+. +...+...++.+|+..|+.....
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 3333332 23355678999999999886644
No 60
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00073 Score=56.73 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=71.4
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-. ..+++|.+|+.|+.|++.+++|+. .++|..|+.++-...++..+++.++. ++..+..++
T Consensus 137 naLLKtLEepp--------~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia 207 (559)
T PRK05563 137 NALLKTLEEPP--------AHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA 207 (559)
T ss_pred HHHHHHhcCCC--------CCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666666443 266777778889999999999986 58899999999999999988765543 345578889
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ 116 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~ 116 (133)
+.+.| +.++............ ...++.+++..
T Consensus 208 ~~s~G-~~R~al~~Ldq~~~~~--~~~It~~~V~~ 239 (559)
T PRK05563 208 RAAEG-GMRDALSILDQAISFG--DGKVTYEDALE 239 (559)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc--cCCCCHHHHHH
Confidence 88887 7777765433222222 34566665544
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.76 E-value=0.0002 Score=61.80 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred CcEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCCCCHHH
Q psy15623 22 KSIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGNAVQQ 91 (133)
Q Consensus 22 ~~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G~sgad 91 (133)
+.+.+|||||.+ ..+|+|+.|||. .|+++.|+.+++.+||+..... ..+. .+..+..++..+..|-+..
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r 388 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDR 388 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccc
Confidence 479999999973 368999999997 7999999999999999977754 2222 4556788888887776553
Q ss_pred H------HHH---HHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623 92 K------VMK---SYTKKTFC--GKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 92 i------~~~---~~~~~~~~--~~~~~i~~~dl~~a~~~~~ 122 (133)
. ..+ ++..+... .....++.+|+...+..+-
T Consensus 389 ~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 389 FLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred cCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 2 111 11111111 1234588888888876543
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.75 E-value=0.0002 Score=62.71 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=53.9
Q ss_pred CcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC----CC-ChhcHHHHHHHcCCCCHH
Q psy15623 22 KSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD----LA-SDLDLELVSDQLEGNAVQ 90 (133)
Q Consensus 22 ~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~----~~-~~~~~~~la~~t~G~sga 90 (133)
+.+.+||||+..+ .+|+|+.|||. .|+++.|+.+++..||+.+.+... +. .+..+..+++.+.+|-+.
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~ 392 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPG 392 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccc
Confidence 3799999999743 49999999996 899999999999999877765432 22 466688888988877543
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=97.74 E-value=0.00057 Score=50.92 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=63.8
Q ss_pred cEEEEEeeCCCCCCC---HHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH-H
Q psy15623 23 SIVILGASNFPWNID---DAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM-K 95 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD---~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~-~ 95 (133)
.+++++++..|..++ |.+.+|+ ...++++.|+.++|.+|++.......+. ++.-+..|+++.+| +.+.+.. +
T Consensus 126 ~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l 204 (229)
T PRK06893 126 TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDAL 204 (229)
T ss_pred cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHH
Confidence 456677777788776 8888854 5799999999999999999888543333 34457889998885 5555543 2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 96 SYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 96 ~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
...........+.+|.+.+.+.+
T Consensus 205 ~~l~~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 205 DLLDKASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHh
Confidence 22222222333468877776654
No 64
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.73 E-value=0.00022 Score=53.98 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL 71 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~ 71 (133)
+.|+..|+.... ++++|++++..+ .++|++.+||+.+++||.++.+++.+|++.++.....
T Consensus 131 ~~Ll~~~e~~~~--------~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~ 196 (261)
T TIGR02881 131 DTLVKGMEDNRN--------EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY 196 (261)
T ss_pred HHHHHHHhccCC--------CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 557777776532 556666654322 3789999999999999999999999999999976543
No 65
>PRK09087 hypothetical protein; Validated
Probab=97.68 E-value=0.00047 Score=51.46 Aligned_cols=110 Identities=7% Similarity=0.087 Sum_probs=71.9
Q ss_pred HHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE 78 (133)
Q Consensus 5 lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~ 78 (133)
|...++.+...+ +.+||+++..|..+ .+.+.+||. ..+++..|+.+.|.++++..+....+. ++.-++
T Consensus 106 lf~l~n~~~~~g------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~ 179 (226)
T PRK09087 106 LFHLINSVRQAG------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVY 179 (226)
T ss_pred HHHHHHHHHhCC------CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444444444433 56777776655533 677888987 889999999999999999999765443 455578
Q ss_pred HHHHHcCCCCHHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 79 LVSDQLEGNAVQQKVM-KSYTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 79 ~la~~t~G~sgadi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
.|+++..| +.+.+.. +...........+.++..-+.+.++.+
T Consensus 180 ~La~~~~r-~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 180 YLVSRMER-SLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 89998874 3333332 222222232344568988888887755
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.67 E-value=0.00066 Score=52.58 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=62.2
Q ss_pred EEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623 25 VILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFC 103 (133)
Q Consensus 25 ~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~ 103 (133)
.+|.+|+.+..+.+.+.+|+ ..+++++|+.++...+++..+++.+.. ++..+..|++.+.| +.+++.... ...+
T Consensus 157 ~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-dlr~l~~~l---~~~~ 231 (337)
T PRK12402 157 RFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-DLRKAILTL---QTAA 231 (337)
T ss_pred eEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH---HHHH
Confidence 45556666778888888887 578999999999999999988765544 45567888888743 445543322 2233
Q ss_pred cCCCCCCHHHHHHHHH
Q psy15623 104 GKNSTPSQPKLLQAER 119 (133)
Q Consensus 104 ~~~~~i~~~dl~~a~~ 119 (133)
.....++.+++.+.+.
T Consensus 232 ~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 232 LAAGEITMEAAYEALG 247 (337)
T ss_pred HcCCCCCHHHHHHHhC
Confidence 3344688888776654
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0016 Score=53.79 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=70.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-. .++++|.+|+.++.|.+++++|+. +++|..++.++-.+.++..+...++. ++..+..||
T Consensus 139 NALLKtLEEPp--------~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 139 NALLKTLEEPP--------AHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred HHHHHHhhcCC--------CceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56666665432 378889999999999999999995 58888888888888888888765443 455688899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.++| +.+|.....-.+.... ...++.+++.+.
T Consensus 210 ~~S~G-d~RdAL~lLeq~i~~~--~~~it~~~V~~~ 242 (484)
T PRK14956 210 KKGDG-SVRDMLSFMEQAIVFT--DSKLTGVKIRKM 242 (484)
T ss_pred HHcCC-hHHHHHHHHHHHHHhC--CCCcCHHHHHHH
Confidence 98887 3555443322222222 234777766543
No 68
>PRK08727 hypothetical protein; Validated
Probab=97.55 E-value=0.0012 Score=49.26 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=59.4
Q ss_pred EEEEeeCCCCCC---CHHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHH-HHHH
Q psy15623 25 VILGASNFPWNI---DDAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKV-MKSY 97 (133)
Q Consensus 25 ~vi~aTn~~~~l---D~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~-~~~~ 97 (133)
+++.+.+.|..+ +|++.+|| -..++++.|+.++|.+|++.......+. ++..+..|+++++| +.+.+. .+..
T Consensus 129 vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred EEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455555567766 79999997 5678899999999999999876543332 34557889999874 222222 2222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHH
Q psy15623 98 TKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 98 ~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
.........+.+|.+.+.+.+.
T Consensus 208 l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 208 LDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHhCCCCCHHHHHHHHh
Confidence 2211112234688777776653
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0014 Score=56.77 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=64.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-.. ++.+|.+||.++.|.+.|++|+ .++.|..++.++-.+.|+..+++.++. ++.-+..|+
T Consensus 137 NALLKtLEEPP~--------~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA 207 (830)
T PRK07003 137 NAMLKTLEEPPP--------HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA 207 (830)
T ss_pred HHHHHHHHhcCC--------CeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 567777775533 7789999999999999999999 679999999999999999988765543 455688899
Q ss_pred HHcCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVM 94 (133)
Q Consensus 82 ~~t~G~sgadi~~ 94 (133)
+.++|- .+|..+
T Consensus 208 ~~A~Gs-mRdALs 219 (830)
T PRK07003 208 RAAQGS-MRDALS 219 (830)
T ss_pred HHcCCC-HHHHHH
Confidence 999884 444443
No 70
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0022 Score=55.29 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=70.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|.+|+.++.|.+.+++|+. +++|.+|+.++....++..+.+.++. .+..+..+|
T Consensus 136 NALLKtLEEPP~--------~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA 206 (725)
T PRK07133 136 NALLKTLEEPPK--------HVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIA 206 (725)
T ss_pred HHHHHHhhcCCC--------ceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666765432 67888888899999999999996 89999999999999999888665544 334477788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++........... ...++.+++.+.
T Consensus 207 ~lS~G-slR~AlslLekl~~y~--~~~It~e~V~el 239 (725)
T PRK07133 207 KLSSG-SLRDALSIAEQVSIFG--NNKITLKNVEEL 239 (725)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc--cCCCCHHHHHHH
Confidence 88875 4455543322222222 233666665543
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.004 Score=49.27 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
..++|.+|+.+..+.+++.+|+. .++++.|+.++...++...+.+.+.. ++..+..|+..+.| +.+.+...+.....
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 45666677788999999999885 68999999999999999888765543 45567888887765 55555433222222
Q ss_pred HhcCCCCCCHHHHHHH
Q psy15623 102 FCGKNSTPSQPKLLQA 117 (133)
Q Consensus 102 ~~~~~~~i~~~dl~~a 117 (133)
.+... ++.+++...
T Consensus 216 y~~~~--it~~~v~~~ 229 (367)
T PRK14970 216 FCGKN--ITRQAVTEN 229 (367)
T ss_pred hcCCC--CCHHHHHHH
Confidence 22222 666555544
No 72
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.00077 Score=54.99 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=69.0
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDL 77 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 77 (133)
+|+..++.+...+ ..+|+++.+.|..+ ++.+.+||. ..+.+++|+.+.|..|++..+...++. ++..+
T Consensus 215 elf~~~n~l~~~~------k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~ 288 (440)
T PRK14088 215 ELFHTFNELHDSG------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVL 288 (440)
T ss_pred HHHHHHHHHHHcC------CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3555555554433 55666666677764 456666885 577899999999999999998653332 34448
Q ss_pred HHHHHHcCCCCHHHHHHH-HHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 78 ELVSDQLEGNAVQQKVMK-SYTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~-~~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+.||+...| +.++|... ....+........++.+...+.++.+
T Consensus 289 ~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 289 NFVAENVDD-NLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHhcccc-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 889988875 66666532 22222222233446666666665544
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0014 Score=55.90 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=62.8
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-. .++++|.+||.++.|.+.|++|+ ..+.|..++.++..+.++..+.+.++. ++..+..|+
T Consensus 142 NALLKTLEEPP--------~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 142 NAMLKTLEEPP--------EHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred HHHHHhhccCC--------CCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56666666432 37889999999999999999998 779999999999999999888665444 234467788
Q ss_pred HHcCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMK 95 (133)
Q Consensus 82 ~~t~G~sgadi~~~ 95 (133)
+.++| +.++...+
T Consensus 213 ~~A~G-s~RdALsL 225 (700)
T PRK12323 213 QAAQG-SMRDALSL 225 (700)
T ss_pred HHcCC-CHHHHHHH
Confidence 88886 55555443
No 74
>PRK06620 hypothetical protein; Validated
Probab=97.49 E-value=0.0019 Score=47.80 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=63.7
Q ss_pred cEEEEEeeCCCCC--CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHH-H
Q psy15623 23 SIVILGASNFPWN--IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMK-S 96 (133)
Q Consensus 23 ~v~vi~aTn~~~~--lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~-~ 96 (133)
+.++|+++..|.. + |++.+|+.. .+++..|+.+.+..+++......++. ++.-++.|+++.+| +.+.+... .
T Consensus 114 ~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 114 KYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred CEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence 6788888877765 5 788889874 58999999999999999888654332 34457889988875 55666432 2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH
Q psy15623 97 YTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 97 ~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
..........+.+|.+.+.+.+
T Consensus 192 ~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 192 NINYFALISKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHcCCCCCHHHHHHHh
Confidence 2222222344568877776654
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0022 Score=54.26 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|.+|+.++.|.+.+++|+. .++|+.|+.++....++..+.+.+.. ++..+..++
T Consensus 137 NaLLKtLEEPp~--------~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 137 NALLKTLEEPPK--------HVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHhCCC--------cEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666665433 67788888889999999999986 69999999999999999888665432 345578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ 116 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~ 116 (133)
+.+.| +.+++...........+ ..++.+++.+
T Consensus 208 ~lS~G-dlR~AlnlLekL~~y~~--~~It~e~V~e 239 (605)
T PRK05896 208 DLADG-SLRDGLSILDQLSTFKN--SEIDIEDINK 239 (605)
T ss_pred HHcCC-cHHHHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 88876 55655443332222222 2266655544
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.003 Score=52.34 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-.. .+++|.+|+.++.|.+.+.+|+ ..++|..++.++....++..+++.+.. ++..+..|+
T Consensus 134 NaLLK~LEePp~--------~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa 204 (491)
T PRK14964 134 NALLKTLEEPAP--------HVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIA 204 (491)
T ss_pred HHHHHHHhCCCC--------CeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556666665433 6778888888999999999998 458999999999999999988765544 455688899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.++| +.+++......+..... ..++.+++.+.
T Consensus 205 ~~s~G-slR~alslLdqli~y~~--~~It~e~V~~l 237 (491)
T PRK14964 205 ENSSG-SMRNALFLLEQAAIYSN--NKISEKSVRDL 237 (491)
T ss_pred HHcCC-CHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 99976 77777654333333322 36787777654
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0034 Score=51.93 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=69.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|.+|+.++.+.+++.+|+. .+.|++|+.++...+++..++..++. ++..+..|+
T Consensus 137 naLLk~LEepp~--------~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 137 NALLKTLEEPPP--------RTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred HHHHHHHhcCCC--------CeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666664432 55666677778999999999986 69999999999999999998776544 344577788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++......+... +...++.+++.+.
T Consensus 208 ~~s~G-~lr~al~~Ldkl~~~--~~~~It~~~V~~~ 240 (486)
T PRK14953 208 QASEG-GMRDAASLLDQASTY--GEGKVTIKVVEEF 240 (486)
T ss_pred HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence 88775 445554332222222 2445776666654
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.00076 Score=54.38 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=55.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.-.. ++++|.+|+.++.|.|.+++|+ ..++|++|+.++..+++.. +.+.+ ......++.
T Consensus 135 naLLk~LEep~~--------~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~ 201 (394)
T PRK07940 135 NALLKAVEEPPP--------RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAAR 201 (394)
T ss_pred HHHHHHhhcCCC--------CCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHH
Confidence 567777765432 3444445555999999999998 5899999999988777763 22333 445778899
Q ss_pred HcCCCCHHHHH
Q psy15623 83 QLEGNAVQQKV 93 (133)
Q Consensus 83 ~t~G~sgadi~ 93 (133)
.+.|..+..+.
T Consensus 202 ~s~G~~~~A~~ 212 (394)
T PRK07940 202 ASQGHIGRARR 212 (394)
T ss_pred HcCCCHHHHHH
Confidence 99998886653
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.41 E-value=0.0026 Score=47.60 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=63.4
Q ss_pred EEEEEeeCCCCC---CCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHH
Q psy15623 24 IVILGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSY 97 (133)
Q Consensus 24 v~vi~aTn~~~~---lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~ 97 (133)
-+++.+++.|.. +.|.+.+|+. ..++++.|+.++|.++++......++. ++.-++.|+++.+| +.+.+.....
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~ 211 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD 211 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 355666666666 6899999997 889999999999999999866543333 34457889999885 5666654322
Q ss_pred HHH-HHhcCCCCCCHHHHHHHH
Q psy15623 98 TKK-TFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 98 ~~~-~~~~~~~~i~~~dl~~a~ 118 (133)
... ......+.+|.+-+.+.+
T Consensus 212 ~l~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 212 QLDRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHhcCCCCCHHHHHHHH
Confidence 222 222334558877776654
No 80
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0028 Score=51.88 Aligned_cols=98 Identities=9% Similarity=0.138 Sum_probs=64.2
Q ss_pred cEEEEEeeCCCC---CCCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH-H
Q psy15623 23 SIVILGASNFPW---NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM-K 95 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~-~ 95 (133)
..+++++++.|. .+++.+.+||. ..+.+++|+.+.|..|++..+...++. ++.-++.||....| +.++|.. +
T Consensus 236 k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l 314 (445)
T PRK12422 236 KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHAL 314 (445)
T ss_pred CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 445555555554 46789999997 788889999999999999998765543 34446668887764 5555543 2
Q ss_pred HHH---HHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 96 SYT---KKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 96 ~~~---~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
... .+........++.+...+.++.+
T Consensus 315 ~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 315 TLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 222 12222233557887777777654
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.39 E-value=0.0034 Score=48.14 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=63.5
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
...+|.++|.+..+.+++.+|+. .+++++|+.++...+++.++++.++. ++..+..+++.+.| +.+.+.+... .
T Consensus 132 ~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~---~ 206 (319)
T PRK00440 132 NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQ---A 206 (319)
T ss_pred CCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH---H
Confidence 34566677888888888888987 58999999999999999999765543 45568888888765 3444332222 1
Q ss_pred HhcCCCCCCHHHHHHHHH
Q psy15623 102 FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 102 ~~~~~~~i~~~dl~~a~~ 119 (133)
.+.....++.+++..+..
T Consensus 207 ~~~~~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AAATGKEVTEEAVYKITG 224 (319)
T ss_pred HHHcCCCCCHHHHHHHhC
Confidence 222235678777776643
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0026 Score=52.95 Aligned_cols=105 Identities=11% Similarity=0.113 Sum_probs=73.7
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.... .+.+|.+|+.++.+.+.+++|+ ..++|..++.++-...++..+++.+.. ++..+..|+
T Consensus 137 naLLk~LEepp~--------~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia 207 (509)
T PRK14958 137 NALLKTLEEPPS--------HVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLA 207 (509)
T ss_pred HHHHHHHhccCC--------CeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556666765433 6777888888999999988898 667888888888888888888765544 345578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+.+.| +.+++.+.+..+... +...++.+++.+.+.
T Consensus 208 ~~s~G-slR~al~lLdq~ia~--~~~~It~~~V~~~lg 242 (509)
T PRK14958 208 RAANG-SVRDALSLLDQSIAY--GNGKVLIADVKTMLG 242 (509)
T ss_pred HHcCC-cHHHHHHHHHHHHhc--CCCCcCHHHHHHHHC
Confidence 88876 777776654333222 345677777766543
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0046 Score=52.95 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=73.7
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+.+|.+|+.++.+.+.+++|+ .+++|..++.++-...++..+.+.+.. ++..+..|+
T Consensus 136 NALLKtLEEPP~--------~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA 206 (702)
T PRK14960 136 NALLKTLEEPPE--------HVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA 206 (702)
T ss_pred HHHHHHHhcCCC--------CcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666665432 6678888888999999999999 579999999999999999888765544 455678899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++.+.+-.+... +...++.+++...
T Consensus 207 ~~S~G-dLRdALnLLDQaIay--g~g~IT~edV~~l 239 (702)
T PRK14960 207 ESAQG-SLRDALSLTDQAIAY--GQGAVHHQDVKEM 239 (702)
T ss_pred HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence 88877 777776543222222 3456777776654
No 84
>PRK04195 replication factor C large subunit; Provisional
Probab=97.37 E-value=0.0039 Score=51.37 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=64.0
Q ss_pred EEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15623 24 IVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF 102 (133)
Q Consensus 24 v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~ 102 (133)
..+|.++|.++.+++.-+|+....|+|+.|+.++...+++..+...++. ++..+..|++.+.| ||..........
T Consensus 131 ~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~ 206 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAI 206 (482)
T ss_pred CCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence 3466678999999885556555689999999999999999998665443 35568889988765 665433333335
Q ss_pred hcCCCCCCHHHHHHH
Q psy15623 103 CGKNSTPSQPKLLQA 117 (133)
Q Consensus 103 ~~~~~~i~~~dl~~a 117 (133)
+.+...++.+++...
T Consensus 207 a~~~~~it~~~v~~~ 221 (482)
T PRK04195 207 AEGYGKLTLEDVKTL 221 (482)
T ss_pred hcCCCCCcHHHHHHh
Confidence 556666777777544
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.35 E-value=0.0053 Score=45.25 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=67.2
Q ss_pred HHHHhhCCCCCCCCCCCCcEEEEEeeCC-CC--CCCHHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623 5 LLCHMDGIASTTNADPTKSIVILGASNF-PW--NIDDAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE 78 (133)
Q Consensus 5 lL~~lD~~~~~~~~~~~~~v~vi~aTn~-~~--~lD~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~ 78 (133)
|+..++.....+ ..++|.+++. |. .+.+.+.+|| ...+++++|+.+++..+++.+..+..+. ++.-+.
T Consensus 110 L~~~~~~~~~~~------~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~ 183 (227)
T PRK08903 110 LFNLFNRVRAHG------QGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPD 183 (227)
T ss_pred HHHHHHHHHHcC------CcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444555444332 4334444443 32 3567788787 5799999999999999999887654443 344577
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHH
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKT-FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~-~~~~~~~i~~~dl~~a~~ 119 (133)
.|++..+| +.+++......... .......++...+.+.+.
T Consensus 184 ~L~~~~~g-n~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 184 YLLTHFRR-DMPSLMALLDALDRYSLEQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHhccC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 78886554 67777654333322 324556788877776653
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.005 Score=51.19 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=70.7
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-. ..+++|.+||.++.+.+++.+|+. +++|..|+.++-...++..+.+.++. ++..+..|+
T Consensus 134 naLLk~LEep~--------~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 134 NALLKTLEEPP--------EHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred HHHHHHHHhCC--------CCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666666542 266778888999999999999986 79999999999999999988765544 345578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
+.+.| +.+++.+.+..... ....++.+++.+.+
T Consensus 205 ~~s~G-dlR~aln~Lekl~~---~~~~It~~~V~~~l 237 (504)
T PRK14963 205 RLADG-AMRDAESLLERLLA---LGTPVTRKQVEEAL 237 (504)
T ss_pred HHcCC-CHHHHHHHHHHHHh---cCCCCCHHHHHHHH
Confidence 88875 34444332222211 13357777766553
No 87
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.0068 Score=50.74 Aligned_cols=102 Identities=15% Similarity=0.231 Sum_probs=71.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+...+ .+.+|.+|+.+..|.+++.+|+ .+++|.+++.++-...++..++..+.. ++..+..|+
T Consensus 135 NALLK~LEEpp~--------~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 135 NALLKTLEEPPS--------YVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred HHHHHHHhhcCC--------ceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556777776533 5677777788999999999996 589999999999888888888765443 455678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ 116 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~ 116 (133)
+.+.| +.+++...+..+...+ ...++.+++.+
T Consensus 206 ~~s~G-dlR~alnlLdqai~~~--~~~It~~~V~~ 237 (535)
T PRK08451 206 RSGNG-SLRDTLTLLDQAIIYC--KNAITESKVAD 237 (535)
T ss_pred HHcCC-cHHHHHHHHHHHHHhc--CCCCCHHHHHH
Confidence 88876 7777765443322222 23456555543
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0063 Score=51.76 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=71.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-. ..+.+|.+|+.++.+.+.+++|+ ..++|..++.++....++..+.+.++. ++..+..|+
T Consensus 142 NaLLKtLEEPP--------~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 142 NAMLKTLEEPP--------EYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred HHHHHhcccCC--------CCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44565555432 36677778888999999988898 789999999999999999888765544 344578899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++.+.+...... +...++.+++.+.
T Consensus 213 ~~s~G-slR~al~lLdq~ia~--~~~~It~~~V~~~ 245 (618)
T PRK14951 213 RAARG-SMRDALSLTDQAIAF--GSGQLQEAAVRQM 245 (618)
T ss_pred HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence 98887 777776543222222 3445776665544
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0054 Score=51.66 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=70.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-. ..+++|.+|+.++.|.+++.+|+. .++|.+|+.++...+++..+...+.. ++..+..|+
T Consensus 137 naLLK~LEepp--------~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa 207 (563)
T PRK06647 137 NALLKTIEEPP--------PYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA 207 (563)
T ss_pred HHHHHhhccCC--------CCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666666432 367777888889999999999987 58999999999999999888655443 455678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++............ ..++.+++.+.
T Consensus 208 ~~s~G-dlR~alslLdklis~~~--~~It~e~V~~l 240 (563)
T PRK06647 208 YKSTG-SVRDAYTLFDQVVSFSD--SDITLEQIRSK 240 (563)
T ss_pred HHcCC-CHHHHHHHHHHHHhhcC--CCCCHHHHHHH
Confidence 88887 66666543322222222 34666655543
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=97.29 E-value=0.0053 Score=47.84 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=59.9
Q ss_pred EEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15623 24 IVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF 102 (133)
Q Consensus 24 v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~ 102 (133)
..+|.+||.++.+.+++.+|+ ..++|+.|+.++....++..+++.++. ++..+..+++.+.| +.+.+.+.... .
T Consensus 130 t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~---~ 204 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQA---T 204 (319)
T ss_pred ceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH---H
Confidence 456678888999999999998 479999999999999999988765443 35567888888765 33333332221 1
Q ss_pred hcCCCCCCHHHHHH
Q psy15623 103 CGKNSTPSQPKLLQ 116 (133)
Q Consensus 103 ~~~~~~i~~~dl~~ 116 (133)
..+...++.+++.+
T Consensus 205 ~~~~~~i~~~~v~~ 218 (319)
T PLN03025 205 HSGFGFVNQENVFK 218 (319)
T ss_pred HhcCCCCCHHHHHH
Confidence 11233566655543
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.29 E-value=0.00053 Score=60.22 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC----C-ChhcHHHHHHHcCCCC
Q psy15623 21 TKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL----A-SDLDLELVSDQLEGNA 88 (133)
Q Consensus 21 ~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~----~-~~~~~~~la~~t~G~s 88 (133)
++.+.+||||+..+ .+|+|+.|||+ .|.++.|+.+++..|++.+...+.. . .+..+...+..+.+|.
T Consensus 305 ~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 305 RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred cCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 34799999999977 49999999998 5889999999999999988754322 1 3344455556665554
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0037 Score=52.73 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=71.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-.. .+++|.+||.++.|.+.+++|+. .++|..++.++-...+...+++.++. ++..+..|+
T Consensus 137 naLLk~LEepp~--------~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la 207 (576)
T PRK14965 137 NALLKTLEEPPP--------HVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA 207 (576)
T ss_pred HHHHHHHHcCCC--------CeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 567777775433 67888888999999999999985 78899999998888888888765543 455678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ 116 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~ 116 (133)
+.+.| +.+++.+........+.+ .++.+++..
T Consensus 208 ~~a~G-~lr~al~~Ldqliay~g~--~It~edV~~ 239 (576)
T PRK14965 208 RKGDG-SMRDSLSTLDQVLAFCGD--AVGDDDVAE 239 (576)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccC--CCCHHHHHH
Confidence 88886 556665443322223332 366666543
No 93
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.27 E-value=0.0055 Score=44.83 Aligned_cols=95 Identities=9% Similarity=0.041 Sum_probs=60.0
Q ss_pred cEEEEEeeCCCCCCC---HHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623 23 SIVILGASNFPWNID---DAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS 96 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD---~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~ 96 (133)
..+++.++..+..++ +.+.+|| ...+++++|+.+++..+++.+..+.... ++.-+..|++. -+-+.+++....
T Consensus 124 ~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l 202 (226)
T TIGR03420 124 GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALL 202 (226)
T ss_pred CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence 345555444554443 7788787 4789999999999999999887654433 34447778885 445777776543
Q ss_pred HHHH-HHhcCCCCCCHHHHHHHH
Q psy15623 97 YTKK-TFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 97 ~~~~-~~~~~~~~i~~~dl~~a~ 118 (133)
.... +...+...++.+.+.+.+
T Consensus 203 ~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 203 DALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHh
Confidence 3222 222344567766665543
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0052 Score=52.82 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=74.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.+ .+.+|.+||.++.+.+.+++|+ ..+.|..++.++-...++..+++.++. ++..+..|+
T Consensus 137 NALLKtLEEPp~--------~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia 207 (709)
T PRK08691 137 NAMLKTLEEPPE--------HVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLG 207 (709)
T ss_pred HHHHHHHHhCCC--------CcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 567777776433 6788888899999999999988 567888999999999999988766544 345578889
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+.+.| +.+++.+.+..+... +...|+.+++...+.
T Consensus 208 ~~A~G-slRdAlnLLDqaia~--g~g~It~e~V~~lLG 242 (709)
T PRK08691 208 RAAAG-SMRDALSLLDQAIAL--GSGKVAENDVRQMIG 242 (709)
T ss_pred HHhCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHHHc
Confidence 88865 666766544332222 234577776665543
No 95
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.21 E-value=0.0052 Score=52.16 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=67.5
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCC----CCCCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-Chhc
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFP----WNIDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLD 76 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~----~~lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~ 76 (133)
+|...++.+...+ +-+|| |||.+ ..+++.|.+||.. .+++..|+.+.|..||+..+....+. ++.-
T Consensus 398 eLF~l~N~l~e~g------k~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV 470 (617)
T PRK14086 398 EFFHTFNTLHNAN------KQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV 470 (617)
T ss_pred HHHHHHHHHHhcC------CCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3455555554432 33344 66653 3578899999865 55888999999999999999765444 3445
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHhh
Q psy15623 77 LELVSDQLEGNAVQQKVMKSYTK-KTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 77 ~~~la~~t~G~sgadi~~~~~~~-~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
++.|+++..+ +.++|....... .........++.+...+.++.+
T Consensus 471 i~yLa~r~~r-nvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 471 LEFIASRISR-NIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHhccC-CHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7888888764 566775322222 1222233446665555555544
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.01 Score=48.63 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=60.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|.+||.++.|.+++.+|+. .++|..|+.++-...+...+++.+.. ++..+..|+
T Consensus 139 n~LLk~lEep~~--------~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 139 NSLLKTLEEPPQ--------HVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHhhcCCC--------CceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666665332 66777888999999999999996 68999999999999998888765443 345578888
Q ss_pred HHcCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVM 94 (133)
Q Consensus 82 ~~t~G~sgadi~~ 94 (133)
..+.| +.+++.+
T Consensus 210 ~~s~g-dlr~a~~ 221 (451)
T PRK06305 210 RAAQG-SLRDAES 221 (451)
T ss_pred HHcCC-CHHHHHH
Confidence 88876 4444443
No 97
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0081 Score=50.94 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=72.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.... .+++|.+|+.++.+.+.+.+|+. .++|..|+.++-...++..+++.+.. ++..+..|+
T Consensus 150 naLLKtLEePp~--------~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 150 NALLKTLEEPPP--------HVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHHHHHHhCCC--------CeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666665433 56777778888889999888984 79999999999999999988766544 345577888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
+.+.| +.+++.+........ +...|+.+++...+
T Consensus 221 ~~a~G-dlr~al~~Ldkli~~--g~g~It~e~V~~ll 254 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAIAH--GAGEVTAEAVRDML 254 (598)
T ss_pred HHcCC-CHHHHHHHHHHHHhh--cCCCcCHHHHHHHh
Confidence 88876 677765433222222 23467777777654
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0097 Score=52.23 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.... .+++|.+|+.++.|-+.|.+|+ .+++|..++.++-..+|+..+++.++. ++..+..|+
T Consensus 138 NaLLK~LEEpP~--------~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 138 NALLKIVEEPPE--------HLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred HHHHHHHhCCCC--------CeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 567777776654 6677778888899999998897 578999999999999999988765554 344567788
Q ss_pred HHcCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVM 94 (133)
Q Consensus 82 ~~t~G~sgadi~~ 94 (133)
+.+.| +.+++.+
T Consensus 209 ~~sgG-dlR~Al~ 220 (824)
T PRK07764 209 RAGGG-SVRDSLS 220 (824)
T ss_pred HHcCC-CHHHHHH
Confidence 88876 6666654
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.18 E-value=0.001 Score=58.37 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=53.9
Q ss_pred CcEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-----ChhcHHHHHHHcCCCCHH
Q psy15623 22 KSIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-----SDLDLELVSDQLEGNAVQ 90 (133)
Q Consensus 22 ~~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~~~~la~~t~G~sga 90 (133)
+.+.+||+|+.. ..+|+|+.|||. .|.++.|+.+++..||+.+...+... .+..+..++..+.+|-..
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 479999999987 358999999996 58999999999999999887664432 344567777888777544
No 100
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.18 E-value=0.0029 Score=55.89 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=72.7
Q ss_pred CcEEEEEeeCC---CCCCCHHHHhcccc-EEEcCCCCHHHHHHHHHHHHhcCC-CCChhcHHHHHHHcCCCCHHHHHH--
Q psy15623 22 KSIVILGASNF---PWNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQVD-LASDLDLELVSDQLEGNAVQQKVM-- 94 (133)
Q Consensus 22 ~~v~vi~aTn~---~~~lD~al~rRfd~-~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~~~~la~~t~G~sgadi~~-- 94 (133)
.+|+|||+||. |..++|.+..||.. .|.|++++.++..+||+.-+.... .-++.-+..+|+... ...+|++.
T Consensus 901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKAL 979 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKAL 979 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHH
Confidence 48999999996 67788888888875 488999999999999999887542 123444666777554 33467753
Q ss_pred -HHHHHHHHhcCCCCCCHHHHHHHHHhhhhccc
Q psy15623 95 -KSYTKKTFCGKNSTPSQPKLLQAERPFRRSRV 126 (133)
Q Consensus 95 -~~~~~~~~~~~~~~i~~~dl~~a~~~~~~s~~ 126 (133)
++..+... .+...++.+|+.+|...+..+++
T Consensus 980 DILRrAgEi-kegskVT~eHVrkAleeiE~srI 1011 (1164)
T PTZ00112 980 QICRKAFEN-KRGQKIVPRDITEATNQLFDSPL 1011 (1164)
T ss_pred HHHHHHHhh-cCCCccCHHHHHHHHHHHHhhhH
Confidence 33333333 34457999999999877666543
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.15 E-value=0.0031 Score=45.20 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=53.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
+.||..|+.-.. ..++|.+||.+..|++++.+|+. .+++++|+.++..++++.. +++ +..+..++.
T Consensus 114 ~~Ll~~le~~~~--------~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~ 179 (188)
T TIGR00678 114 NALLKTLEEPPP--------NTLFILITPSPEKLLPTIRSRCQ-VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLA 179 (188)
T ss_pred HHHHHHhcCCCC--------CeEEEEEECChHhChHHHHhhcE-EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHH
Confidence 456666765332 55677778888999999999985 8999999999998888776 233 445777777
Q ss_pred HcCCC
Q psy15623 83 QLEGN 87 (133)
Q Consensus 83 ~t~G~ 87 (133)
.+.|-
T Consensus 180 ~~~g~ 184 (188)
T TIGR00678 180 LAGGS 184 (188)
T ss_pred HcCCC
Confidence 77763
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.14 E-value=0.0085 Score=46.23 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=37.6
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~ 66 (133)
++.+|.+||.++.+++++.+||. .+.++.|+.+++..+++.++
T Consensus 131 ~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 131 NCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred CceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 56788899999999999999996 78999999999998877654
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0079 Score=51.19 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-. +.+++|.+||.++.+.+.+++|+. .++|+.++.++-..+++..+.+.... ++..+..|+
T Consensus 137 naLLk~LEEP~--------~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA 207 (624)
T PRK14959 137 NALLKTLEEPP--------ARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA 207 (624)
T ss_pred HHHHHHhhccC--------CCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56666666532 267888889999999999988985 68999999999999999888765542 345577888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++....... +..+...++.+++.+.
T Consensus 208 ~~s~G-dlR~Al~lLeql--l~~g~~~It~d~V~~~ 240 (624)
T PRK14959 208 RRAAG-SVRDSMSLLGQV--LALGESRLTIDGARGV 240 (624)
T ss_pred HHcCC-CHHHHHHHHHHH--HHhcCCCcCHHHHHHH
Confidence 87765 333333222111 1233346776665433
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.013 Score=50.18 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-.. .+.+|.+|+.++.|.+.+++|+ ..++|..++.++-...|+..+...++. ++..+..|+
T Consensus 137 NALLKtLEEPp~--------~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia 207 (647)
T PRK07994 137 NALLKTLEEPPE--------HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA 207 (647)
T ss_pred HHHHHHHHcCCC--------CeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 566676765433 6778888888999999999996 889999999999999999888654443 345578889
Q ss_pred HHcCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMK 95 (133)
Q Consensus 82 ~~t~G~sgadi~~~ 95 (133)
+.+.| +.++...+
T Consensus 208 ~~s~G-s~R~Al~l 220 (647)
T PRK07994 208 RAADG-SMRDALSL 220 (647)
T ss_pred HHcCC-CHHHHHHH
Confidence 88887 44444433
No 105
>PRK04132 replication factor C small subunit; Provisional
Probab=97.10 E-value=0.01 Score=52.18 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.|+..|+... +++.+|.+||.++.|.+++.+|+ ..+.|++|+.++-...++..+.+.++. ++..+..|+
T Consensus 648 nALLk~lEep~--------~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia 718 (846)
T PRK04132 648 QALRRTMEMFS--------SNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL 718 (846)
T ss_pred HHHHHHhhCCC--------CCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 34555555443 37789999999999999999997 678999999999998888887654443 455688899
Q ss_pred HHcCCC
Q psy15623 82 DQLEGN 87 (133)
Q Consensus 82 ~~t~G~ 87 (133)
+.++|=
T Consensus 719 ~~s~GD 724 (846)
T PRK04132 719 YIAEGD 724 (846)
T ss_pred HHcCCC
Confidence 888873
No 106
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.07 E-value=0.022 Score=45.06 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=63.6
Q ss_pred CcEEEEEeeCCCC-CCCHHHHhccccEEEcCCCCH-HHHHHHHHHHHhcCC----C------C-----------------
Q psy15623 22 KSIVILGASNFPW-NIDDAFLRRLEKRIYVPLPSS-SGRQELLRLILRQVD----L------A----------------- 72 (133)
Q Consensus 22 ~~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P~~-~~R~~il~~~~~~~~----~------~----------------- 72 (133)
.++++++++|-.+ .++++++.||...+.++.|.. ++|.+|++....... + .
T Consensus 170 ~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 249 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQ 249 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCC
Confidence 3789999999644 599999999999999998866 999999987532100 0 0
Q ss_pred ---Chhc---HHHHHHHc--CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 73 ---SDLD---LELVSDQL--EGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 73 ---~~~~---~~~la~~t--~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
++.- +..++..| +|.-|.-.....+.+.+...++..++.+|+.....
T Consensus 250 V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 250 LKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVAT 304 (334)
T ss_pred cccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHH
Confidence 0111 22233333 23333322334555556668888999999977654
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=97.04 E-value=0.0086 Score=44.77 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=67.9
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDL 77 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 77 (133)
+|...++.+..++ +.++++++..|..+ .|.+.+||. ..+.+..|+.++|..+++.......+. ++.-+
T Consensus 118 ~Lf~l~n~~~~~g------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~ 191 (234)
T PRK05642 118 ALFHLFNRLRDSG------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVG 191 (234)
T ss_pred HHHHHHHHHHhcC------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3555555554433 67788777766544 688888985 667778999999999999655443332 34457
Q ss_pred HHHHHHcCCCCHHHHHHH-HHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 78 ELVSDQLEGNAVQQKVMK-SYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~-~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
+.|+++.+| +++.+... ...........+.+|.+-+.+.+
T Consensus 192 ~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 192 HFILTRGTR-SMSALFDLLERLDQASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHh
Confidence 888888874 66666543 22222222333557766655543
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.018 Score=48.33 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=69.8
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.... .+++|.+|+.+..+.+.+++|+ ..++|..++.++-...++..+++.++. ++..+..|+
T Consensus 137 naLLK~LEepp~--------~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia 207 (546)
T PRK14957 137 NALLKTLEEPPE--------YVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA 207 (546)
T ss_pred HHHHHHHhcCCC--------CceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666775433 5677777777999998988899 789999999999888888888765544 455577788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++.+....+...+. ..++.+++.+.
T Consensus 208 ~~s~G-dlR~alnlLek~i~~~~--~~It~~~V~~~ 240 (546)
T PRK14957 208 YHAKG-SLRDALSLLDQAISFCG--GELKQAQIKQM 240 (546)
T ss_pred HHcCC-CHHHHHHHHHHHHHhcc--CCCCHHHHHHH
Confidence 88864 55665543332222322 34666665553
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.026 Score=49.98 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=61.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-.. .+.+|.+|+.++.|.+.+++|+ .+++|..++.++-...|+..+...++. .+..+..|+
T Consensus 137 NALLKtLEEPP~--------~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 137 NALLKTLEEPPE--------HVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred HHHHHHHhccCC--------CeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 566666765433 6777778888999999999998 679999999999998888888654433 344578888
Q ss_pred HHcCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMK 95 (133)
Q Consensus 82 ~~t~G~sgadi~~~ 95 (133)
+.+.| +.+++..+
T Consensus 208 ~~S~G-d~R~ALnL 220 (944)
T PRK14949 208 KAANG-SMRDALSL 220 (944)
T ss_pred HHcCC-CHHHHHHH
Confidence 88887 44454443
No 110
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.99 E-value=0.015 Score=47.01 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=61.1
Q ss_pred cEEEEEeeC--CCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-----CCCChhcHHHHHHHcCCCCHHHHHHH
Q psy15623 23 SIVILGASN--FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-----DLASDLDLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 23 ~v~vi~aTn--~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-----~~~~~~~~~~la~~t~G~sgadi~~~ 95 (133)
.+++|++|+ ....+++++++|+ ..+.+++|+.++...+++..+... .+ ++..++.+++.+.| .++.+.+.
T Consensus 120 ~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~G-d~R~aln~ 196 (413)
T PRK13342 120 TITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANG-DARRALNL 196 (413)
T ss_pred cEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCC-CHHHHHHH
Confidence 567777653 3458999999999 789999999999999999887542 22 23446778887755 44444332
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 96 SYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 96 ~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
...+... ...++.+++.+.+.
T Consensus 197 Le~~~~~---~~~It~~~v~~~~~ 217 (413)
T PRK13342 197 LELAALG---VDSITLELLEEALQ 217 (413)
T ss_pred HHHHHHc---cCCCCHHHHHHHHh
Confidence 2222222 44678777777654
No 111
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.94 E-value=0.0094 Score=48.85 Aligned_cols=98 Identities=7% Similarity=0.131 Sum_probs=63.6
Q ss_pred cEEEEEeeCCCCC---CCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCC---CChhcHHHHHHHcCCCCHHHHHH
Q psy15623 23 SIVILGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDL---ASDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 23 ~v~vi~aTn~~~~---lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~---~~~~~~~~la~~t~G~sgadi~~ 94 (133)
+-+|+.+...|.. +++.+.+||. -.+.+..|+.++|..|++..++..++ -++.-+..|+..+.| +++.|..
T Consensus 240 k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~g 318 (450)
T PRK14087 240 KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKG 318 (450)
T ss_pred CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHH
Confidence 3344444444544 4788888986 66777889999999999999976432 234457778888876 6666654
Q ss_pred HHHHHHHHh-cC--CCCCCHHHHHHHHHhh
Q psy15623 95 KSYTKKTFC-GK--NSTPSQPKLLQAERPF 121 (133)
Q Consensus 95 ~~~~~~~~~-~~--~~~i~~~dl~~a~~~~ 121 (133)
.+......+ .. ...++.+.+.++++.+
T Consensus 319 aL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 319 SVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 332222222 22 3568888888877755
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.024 Score=48.00 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.... .+++|.+|+.++.|.+.+.+|+ .+++|..++.++-.+.+...+++.+.. ++..+..++
T Consensus 136 NALLK~LEEpp~--------~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia 206 (584)
T PRK14952 136 NALLKIVEEPPE--------HLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVI 206 (584)
T ss_pred HHHHHHHhcCCC--------CeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 567777775443 6788888888999999999995 679999999999999999888765543 344456676
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++.+.......... ...++.+++...
T Consensus 207 ~~s~G-dlR~aln~Ldql~~~~~-~~~It~~~v~~l 240 (584)
T PRK14952 207 RAGGG-SPRDTLSVLDQLLAGAA-DTHVTYQRALGL 240 (584)
T ss_pred HHcCC-CHHHHHHHHHHHHhccC-CCCcCHHHHHHH
Confidence 66654 55555443322222222 345665555443
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.016 Score=48.45 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
|.||..|+.-.. .+++|.+|+.++.+.+.+++|+ ..++|..|+.++-...+...+.+.++. ++..+..|+
T Consensus 137 naLLK~LEepp~--------~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la 207 (527)
T PRK14969 137 NAMLKTLEEPPE--------HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLA 207 (527)
T ss_pred HHHHHHHhCCCC--------CEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556767766432 6778888888999998888898 789999999999998888888655443 344577788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +.++..+.+..+... +...++.+++...
T Consensus 208 ~~s~G-slr~al~lldqai~~--~~~~I~~~~v~~~ 240 (527)
T PRK14969 208 RAAAG-SMRDALSLLDQAIAY--GGGTVNESEVRAM 240 (527)
T ss_pred HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence 88775 455555443222222 3445666665544
No 114
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.87 E-value=0.018 Score=43.69 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=60.1
Q ss_pred CcEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHH---HHc------CCC
Q psy15623 22 KSIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVS---DQL------EGN 87 (133)
Q Consensus 22 ~~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la---~~t------~G~ 87 (133)
++..||+|+|.. ..+++|+.+|| ..++++.|+.++-.+|++.... .+ +...+.++ ..+ ...
T Consensus 150 ~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~---~~-~~~~~~iv~~~~~~R~~~~~~~~ 224 (262)
T TIGR02640 150 PEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKTD---VA-EDSAATIVRLVREFRASGDEITS 224 (262)
T ss_pred CCCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhhC---CC-HHHHHHHHHHHHHHHhhCCccCC
Confidence 356799999976 36799999999 6899999999999999998752 22 22222222 222 123
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhh
Q psy15623 88 AVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 88 sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~~~ 122 (133)
+.+........++.. ..+..++.+||.+.+..+-
T Consensus 225 ~~r~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 225 GLRASLMIAEVATQQ-DIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred cHHHHHHHHHHHHHc-CCCCCCCcHHHHHHHHHHh
Confidence 334433333333333 3456678888887765543
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.033 Score=47.48 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=61.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.... ..++|.+|+.++.|-+++.+|+.. ++|..++.++-...++..+.+.++. ++..+..|+
T Consensus 139 naLLK~LEepp~--------~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 139 NAFLKTLEEPPS--------YAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHhCCCC--------CeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456667776543 456777777788999999999854 9999999999999998888766554 344578888
Q ss_pred HHcCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMK 95 (133)
Q Consensus 82 ~~t~G~sgadi~~~ 95 (133)
..+.| +.+++...
T Consensus 210 ~~s~g-dlr~al~~ 222 (614)
T PRK14971 210 QKADG-GMRDALSI 222 (614)
T ss_pred HHcCC-CHHHHHHH
Confidence 88865 66666543
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.047 Score=46.62 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=69.7
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|.+|+.++.|-+.+.+|. ..++|..|+.++-...+...+++.+.. ++..+..|+
T Consensus 145 naLLK~LEePp~--------~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 145 NAFLKTLEEPPP--------HAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHhCCCC--------CeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 446666665433 4566667777899999998888 589999999999888888877654432 455678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh---cCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFC---GKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~---~~~~~i~~~dl~~a 117 (133)
+.+.| +.+++.+......... .....|+.+++.+.
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~l 253 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAEL 253 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHH
Confidence 88876 5555544322222332 33456777666554
No 117
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.72 E-value=0.031 Score=44.27 Aligned_cols=100 Identities=10% Similarity=0.103 Sum_probs=66.6
Q ss_pred CcEEEEEeeCCCC-CCCHHHHhccccEEEcCCCCH-HHHHHHHHHHHhc-------------------------------
Q psy15623 22 KSIVILGASNFPW-NIDDAFLRRLEKRIYVPLPSS-SGRQELLRLILRQ------------------------------- 68 (133)
Q Consensus 22 ~~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P~~-~~R~~il~~~~~~------------------------------- 68 (133)
.++++|+++|-.+ .+.++++.||..++.++.|+. ++|.+|++.....
T Consensus 173 ~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~ 252 (337)
T TIGR02030 173 ARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQ 252 (337)
T ss_pred CCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhcc
Confidence 4789999998654 699999999999999999975 8999999874321
Q ss_pred CCCCChh--cHHHHHHHcCCCC-HHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 69 VDLASDL--DLELVSDQLEGNA-VQQKVM-KSYTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 69 ~~~~~~~--~~~~la~~t~G~s-gadi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
..+++++ -+..++..+..-| =++|.. ..+.+.+...++..++.+|+..+..-.
T Consensus 253 V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 253 VTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 0111110 1233444444323 244433 455555566888899999999886633
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.053 Score=45.88 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=69.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|.+|+.++.+.+.+.+|+. +++|..++..+...+++..+...+.. ++..+..|+
T Consensus 138 naLLk~LEepp~--------~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 138 NALLKTLEEPPP--------HAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred HHHHHHHhcCCC--------CeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456666665433 55666777778888888888886 58899999999999998888665443 344578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ 116 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~ 116 (133)
+.+.| +.+++.......... ....++.+++..
T Consensus 209 ~~s~G-dlr~al~~LekL~~y--~~~~It~e~V~~ 240 (585)
T PRK14950 209 RAATG-SMRDAENLLQQLATT--YGGEISLSQVQS 240 (585)
T ss_pred HHcCC-CHHHHHHHHHHHHHh--cCCCCCHHHHHH
Confidence 88887 777765433222222 234577766554
No 119
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.024 Score=45.58 Aligned_cols=106 Identities=12% Similarity=0.096 Sum_probs=69.4
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.... ..++|.+|+.+..+-+++.+|+. .++|+.++.++-...++..++..+.. ++..+..|+
T Consensus 145 ~~LLk~LEep~~--------~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 145 NAFLKTLEEPPP--------HAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHhcCCC--------CeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555554332 55666677778889899888886 78999999888888888887655433 355578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh---cCCCCCCHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFC---GKNSTPSQPKLLQAE 118 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~---~~~~~i~~~dl~~a~ 118 (133)
+.+.| +.+.+...+......+ .....++.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88876 5555554333333333 234567777666543
No 120
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.62 E-value=0.047 Score=45.34 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=53.9
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYT 98 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~ 98 (133)
+.+|+.+.+ ..|++.+.+ +-..+++|+|+.+++.++++.+....+.. ++.+++.+++.+.|+|-.++....+.
T Consensus 115 ~~~i~~~~~--~~~p~el~~-~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~ 188 (489)
T CHL00195 115 KTIIIIASE--LNIPKELKD-LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSK 188 (489)
T ss_pred CEEEEEcCC--CCCCHHHHh-ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344444432 456655554 56788999999999999999887654333 56778999999999999999865543
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.54 E-value=0.022 Score=42.22 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=52.2
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDL 77 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 77 (133)
+|...++.+...+ +-+|+++...|.. +++.+.+||.. .+++..|+.+.|..|++......++. ++.-+
T Consensus 118 ~lf~l~n~~~~~~------k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~ 191 (219)
T PF00308_consen 118 ELFHLFNRLIESG------KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVI 191 (219)
T ss_dssp HHHHHHHHHHHTT------SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHH
T ss_pred HHHHHHHHHHhhC------CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 3444555554443 5566666666665 46777778886 88889999999999999999765544 34446
Q ss_pred HHHHHHcCCCCHHHHHH
Q psy15623 78 ELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~ 94 (133)
+.|++..++ +.++|..
T Consensus 192 ~~l~~~~~~-~~r~L~~ 207 (219)
T PF00308_consen 192 EYLARRFRR-DVRELEG 207 (219)
T ss_dssp HHHHHHTTS-SHHHHHH
T ss_pred HHHHHhhcC-CHHHHHH
Confidence 778888763 6666653
No 122
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.0075 Score=47.82 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=45.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLI 65 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~ 65 (133)
|.||..|+.- .+++++|.+|++|+.|.|.+++|+ ..+.|++|+.++..+.|...
T Consensus 150 NaLLKtLEEP--------p~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 150 NALLKTLEEP--------PPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHhcCC--------CcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 6777777743 337899999999999999999999 68999999999988888653
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.51 E-value=0.041 Score=46.84 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=60.8
Q ss_pred cEEEEE-eeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH-HHH
Q psy15623 23 SIVILG-ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS-YTK 99 (133)
Q Consensus 23 ~v~vi~-aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~-~~~ 99 (133)
++++|+ ||+.++.+++++.+||. .+++++.+.++...|++..+.+.... ++.-++.|++.+. .|+...+.. .+.
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~ 399 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVY 399 (615)
T ss_pred eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence 455555 55668999999999997 57888899999999999999875432 2334556666552 454443221 111
Q ss_pred HHH-------h--cCCCCCCHHHHHHHHH
Q psy15623 100 KTF-------C--GKNSTPSQPKLLQAER 119 (133)
Q Consensus 100 ~~~-------~--~~~~~i~~~dl~~a~~ 119 (133)
... . .....++.+|+.+++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 400 GYALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 110 1 1223688999998865
No 124
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.48 E-value=0.065 Score=45.44 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=67.2
Q ss_pred cEEEEEeeCCCC---CCCHHHHhccccEEEcC-CCCHHHHHHHHHHHHhcC-------------------------CCCC
Q psy15623 23 SIVILGASNFPW---NIDDAFLRRLEKRIYVP-LPSSSGRQELLRLILRQV-------------------------DLAS 73 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD~al~rRfd~~i~i~-~P~~~~R~~il~~~~~~~-------------------------~~~~ 73 (133)
++.||+|+|..+ .+.++++.||+.++.+. +|..++|.+|++..+... .+ +
T Consensus 127 ~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~ 205 (589)
T TIGR02031 127 KFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-S 205 (589)
T ss_pred ceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-C
Confidence 678899999765 79999999999999886 468888999998765211 11 1
Q ss_pred hhcHHHHHHHc--CCCC--HHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 74 DLDLELVSDQL--EGNA--VQQKVM-KSYTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 74 ~~~~~~la~~t--~G~s--gadi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+..+..|+..+ -|.+ -++|.. ..+.+.+...++..++.+|+..+..-.
T Consensus 206 ~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 206 AEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELV 258 (589)
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 22233444443 3444 245543 455555666888999999999997643
No 125
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.021 Score=45.36 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=57.4
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.-.. ++++|..|+.|+.+.|.+++|+ ..+.+++|+.++-.++++......+++ +..+..+++
T Consensus 159 naLLk~LEEpp~--------~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~ 228 (351)
T PRK09112 159 NAILKTLEEPPA--------RALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQ 228 (351)
T ss_pred HHHHHHHhcCCC--------CceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHH
Confidence 567777776433 4566666788999999999999 699999999999999998753322222 334677888
Q ss_pred HcCCCCHHHH
Q psy15623 83 QLEGNAVQQK 92 (133)
Q Consensus 83 ~t~G~sgadi 92 (133)
.+.|-...-+
T Consensus 229 ~s~G~pr~Al 238 (351)
T PRK09112 229 RSKGSVRKAL 238 (351)
T ss_pred HcCCCHHHHH
Confidence 8877555444
No 126
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.099 Score=42.50 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=65.4
Q ss_pred cEEEEEeeCCCCCCC---HHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHH-
Q psy15623 23 SIVILGASNFPWNID---DAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMK- 95 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD---~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~- 95 (133)
+-+|+.+-..|..+. |.+.+||.+ .+++.+|+.+.|..||+......++. ++.-+.-+|.+.. -+.++|...
T Consensus 209 kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL 287 (408)
T COG0593 209 KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGAL 287 (408)
T ss_pred CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHH
Confidence 456666666677655 888889885 56678899999999999977554444 3444677787776 466666532
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 96 SYTKKTFCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 96 ~~~~~~~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
.............+|.+-+.+.++.+...
T Consensus 288 ~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 288 NRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 22222223333467777777776655443
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.084 Score=45.07 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.||..|+.-.. .+++|++|+.++.+-+.+.+|+ ..++|..|+.++-...+.....+.+.. +...+..|+
T Consensus 139 naLLK~LEePp~--------~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La 209 (620)
T PRK14948 139 NALLKTLEEPPP--------RVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA 209 (620)
T ss_pred HHHHHHHhcCCc--------CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 567777775332 6778888888999999998898 457888888887777777776554333 234477888
Q ss_pred HHcCC
Q psy15623 82 DQLEG 86 (133)
Q Consensus 82 ~~t~G 86 (133)
+.+.|
T Consensus 210 ~~s~G 214 (620)
T PRK14948 210 QRSQG 214 (620)
T ss_pred HHcCC
Confidence 88876
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.30 E-value=0.052 Score=41.27 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHH-----------------------HHhccccEEEcCCCCHHHHHH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDA-----------------------FLRRLEKRIYVPLPSSSGRQE 60 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~a-----------------------l~rRfd~~i~i~~P~~~~R~~ 60 (133)
.|-..|||--.. ..++|++.||||+-+.+.+- +..||-.+|.|..|+.++=.+
T Consensus 126 ~LKs~LeGgle~----~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~ 201 (249)
T PF05673_consen 126 ALKSVLEGGLEA----RPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLA 201 (249)
T ss_pred HHHHHhcCcccc----CCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHH
Confidence 344556654322 24599999999997776652 222999999999999999999
Q ss_pred HHHHHHhcCCCCCh-hcHHH----HHHHcCCCCHHHH
Q psy15623 61 LLRLILRQVDLASD-LDLEL----VSDQLEGNAVQQK 92 (133)
Q Consensus 61 il~~~~~~~~~~~~-~~~~~----la~~t~G~sgadi 92 (133)
|++.+++..++.-+ .++.. .|..-.|.||+-=
T Consensus 202 IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA 238 (249)
T PF05673_consen 202 IVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTA 238 (249)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999987665522 33322 3344467777653
No 129
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.029 Score=44.24 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.-. +++++|.+|+.++.|.|.+++|+.. +.|++|+.++-.+.+...... ..+.+...++.
T Consensus 124 NaLLK~LEEPp--------~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~ 191 (328)
T PRK05707 124 NALLKSLEEPS--------GDTVLLLISHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWLQQALPE---SDERERIELLT 191 (328)
T ss_pred HHHHHHHhCCC--------CCeEEEEEECChhhCcHHHHhhcee-eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHH
Confidence 56666666533 3778999999999999999999988 899999999888777654321 22334455666
Q ss_pred HcCCCCH
Q psy15623 83 QLEGNAV 89 (133)
Q Consensus 83 ~t~G~sg 89 (133)
.+.|--+
T Consensus 192 la~Gsp~ 198 (328)
T PRK05707 192 LAGGSPL 198 (328)
T ss_pred HcCCCHH
Confidence 6666444
No 130
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.24 E-value=0.15 Score=42.45 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=67.7
Q ss_pred CcEEEEEeeCCCC-------------CCCHHHHhccccEEEc-CCCCHHHHHHHHHHHHhcCC---------C---C---
Q psy15623 22 KSIVILGASNFPW-------------NIDDAFLRRLEKRIYV-PLPSSSGRQELLRLILRQVD---------L---A--- 72 (133)
Q Consensus 22 ~~v~vi~aTn~~~-------------~lD~al~rRfd~~i~i-~~P~~~~R~~il~~~~~~~~---------~---~--- 72 (133)
.+..||||+|..+ .|++++++|||-.+.+ +.|+.+...+|.+..+.... . .
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 3688999999642 6999999999987666 78999999999987653210 0 0
Q ss_pred -----------------ChhcHHHHHH-----H----------cCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 73 -----------------SDLDLELVSD-----Q----------LEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 73 -----------------~~~~~~~la~-----~----------t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
++...+.|.+ + ..|.|++.+..+ .+.+.+....+..++.+|+..|+
T Consensus 422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai 501 (509)
T smart00350 422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAI 501 (509)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 0110111110 1 124566777653 44444455778889999999998
Q ss_pred Hhhhhc
Q psy15623 119 RPFRRS 124 (133)
Q Consensus 119 ~~~~~s 124 (133)
+-++.|
T Consensus 502 ~l~~~s 507 (509)
T smart00350 502 RLLRES 507 (509)
T ss_pred HHHHHh
Confidence 877665
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.062 Score=44.89 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=66.3
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK 100 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~ 100 (133)
..|++|.||..|+.|++-+++|+.+ +.|..-+.++-...+..++.+..+. .+.-+.-+|+..+| |.+|-..+.-.+.
T Consensus 148 ~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i 225 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAI 225 (515)
T ss_pred cCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHH
Confidence 4788888888899999999998764 5666667788888888888776655 34557889999987 6777766554444
Q ss_pred HHhcCCCCCCHHHHHHH
Q psy15623 101 TFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 101 ~~~~~~~~i~~~dl~~a 117 (133)
..+. ..++.+.+...
T Consensus 226 ~~~~--~~It~~~v~~~ 240 (515)
T COG2812 226 AFGE--GEITLESVRDM 240 (515)
T ss_pred HccC--CcccHHHHHHH
Confidence 4443 44555555443
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.16 E-value=0.039 Score=48.42 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=52.4
Q ss_pred CcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCCCCHH
Q psy15623 22 KSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGNAVQ 90 (133)
Q Consensus 22 ~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G~sga 90 (133)
+.+.+||+|+... ..|+++.|||.. |+++.|+.++...|++.+... ..+. ++.-+..++..+.||.+.
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence 3689999999764 589999999975 799999999999999866532 2222 345578888888887764
No 133
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.03 E-value=0.13 Score=44.64 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=58.7
Q ss_pred cEEEEEeeCC--CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc-------CCCC-ChhcHHHHHHHcCCCCHHHH
Q psy15623 23 SIVILGASNF--PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ-------VDLA-SDLDLELVSDQLEGNAVQQK 92 (133)
Q Consensus 23 ~v~vi~aTn~--~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~-------~~~~-~~~~~~~la~~t~G~sgadi 92 (133)
.+++|++|+. ...+++++++|+ ..+++++++.+++..+++..+.. ..+. ++.-++.|++.+.| ..+++
T Consensus 137 ~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~l 214 (725)
T PRK13341 137 TITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSL 214 (725)
T ss_pred eEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHH
Confidence 6777776643 356899999996 57999999999999999998862 1122 34446778887754 44444
Q ss_pred HHHHHHHHHHhc--C--CCCCCHHHHHHHH
Q psy15623 93 VMKSYTKKTFCG--K--NSTPSQPKLLQAE 118 (133)
Q Consensus 93 ~~~~~~~~~~~~--~--~~~i~~~dl~~a~ 118 (133)
.+....+..... . ...++.+.+.+.+
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 443332222221 1 1226656655554
No 134
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.01 E-value=0.056 Score=40.49 Aligned_cols=83 Identities=7% Similarity=-0.004 Sum_probs=62.4
Q ss_pred HHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC-----CChhcHHHHHHHcCCCCHHHHHHHHHHH--HHHhcCCCCCCH
Q psy15623 39 AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL-----ASDLDLELVSDQLEGNAVQQKVMKSYTK--KTFCGKNSTPSQ 111 (133)
Q Consensus 39 al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~-----~~~~~~~~la~~t~G~sgadi~~~~~~~--~~~~~~~~~i~~ 111 (133)
.+.+|+...+++++.+.++-.+++...++..+. -++..++.|++.|.|.... |...+..+ .+...+...++.
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i~~ 256 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREIGG 256 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCCCH
Confidence 355589999999999999999999988864331 1345688899999998655 76554443 334467788999
Q ss_pred HHHHHHHHhhh
Q psy15623 112 PKLLQAERPFR 122 (133)
Q Consensus 112 ~dl~~a~~~~~ 122 (133)
+++.+++...+
T Consensus 257 ~~v~~~~~~~~ 267 (269)
T TIGR03015 257 EEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.98 E-value=0.24 Score=39.51 Aligned_cols=99 Identities=8% Similarity=0.053 Sum_probs=64.4
Q ss_pred CcEEEEEeeCCCC-CCCHHHHhccccEEEcCCCC-HHHHHHHHHHHHhcC--CC--------------------------
Q psy15623 22 KSIVILGASNFPW-NIDDAFLRRLEKRIYVPLPS-SSGRQELLRLILRQV--DL-------------------------- 71 (133)
Q Consensus 22 ~~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P~-~~~R~~il~~~~~~~--~~-------------------------- 71 (133)
.++++|++.|-.+ .+.++++.||..++.+..|+ .+.|.+|++...... +.
T Consensus 186 ~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~ 265 (350)
T CHL00081 186 ARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPK 265 (350)
T ss_pred CCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCC
Confidence 4788999888654 69999999999999999997 699999998753210 00
Q ss_pred -C-Chhc---HHHHHHHcCCCCH-HHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623 72 -A-SDLD---LELVSDQLEGNAV-QQKVM-KSYTKKTFCGKNSTPSQPKLLQAERP 120 (133)
Q Consensus 72 -~-~~~~---~~~la~~t~G~sg-adi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~ 120 (133)
. ++.- +..++..+.--|+ ++|.. ..+.+.++..++..++.+|+..+...
T Consensus 266 V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~ 321 (350)
T CHL00081 266 VEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITL 321 (350)
T ss_pred CccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 0 0111 2233333332222 33332 34445555688889999999988663
No 136
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.65 E-value=0.022 Score=49.81 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=39.6
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR 67 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~ 67 (133)
++|++|+|||.. .|+||++.||+ .|.++.++.++..+|.+.++.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence 489999999987 59999999996 789999999999999998883
No 137
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.34 E-value=0.055 Score=42.30 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=35.6
Q ss_pred CcEEEEEeeC-----CCCCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHH
Q psy15623 22 KSIVILGASN-----FPWNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLIL 66 (133)
Q Consensus 22 ~~v~vi~aTn-----~~~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~ 66 (133)
.+.+||+|+| ....+++|+++||...++++.| ..++...++....
T Consensus 153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 4788999999 7788999999999999999999 5555555554443
No 138
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.24 E-value=0.13 Score=43.83 Aligned_cols=98 Identities=10% Similarity=0.197 Sum_probs=61.9
Q ss_pred cEEEEEeeCCC--CCCCHHHHhccc---cEEEcC--CC-CHHHHHHHHHHHHh---cC---CCCChhcHHHHHHHc---C
Q psy15623 23 SIVILGASNFP--WNIDDAFLRRLE---KRIYVP--LP-SSSGRQELLRLILR---QV---DLASDLDLELVSDQL---E 85 (133)
Q Consensus 23 ~v~vi~aTn~~--~~lD~al~rRfd---~~i~i~--~P-~~~~R~~il~~~~~---~~---~~~~~~~~~~la~~t---~ 85 (133)
++.+|+++|.. ..+||.+..||+ .+++++ .| +.+.|..+.+.+.+ .. +.-++.-+..|.+.. .
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 68899999964 679999999999 667664 34 56777666655443 22 211222334443221 1
Q ss_pred ------CCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHh
Q psy15623 86 ------GNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERP 120 (133)
Q Consensus 86 ------G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~ 120 (133)
-.+.++|..++..+... ..+...++.+|+.+|++.
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKL 390 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 14567887766555443 345678999999998663
No 139
>PRK14700 recombination factor protein RarA; Provisional
Probab=95.20 E-value=0.37 Score=37.64 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=60.1
Q ss_pred CcEEEEEeeCC--CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC------CCC-ChhcHHHHHHHcCCCCHHHH
Q psy15623 22 KSIVILGASNF--PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV------DLA-SDLDLELVSDQLEGNAVQQK 92 (133)
Q Consensus 22 ~~v~vi~aTn~--~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~------~~~-~~~~~~~la~~t~G~sgadi 92 (133)
+.|++||||.. --.+-+|+++|. +.+++...+.++-..+++..+... .+. ++.-++.|++.+.| |.
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G----Da 81 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG----DC 81 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC----HH
Confidence 37888887743 566999999999 889999999999999999888641 111 33446667766665 76
Q ss_pred HH----HHHHHHHHhcC--CCCCCHHHHHHHH
Q psy15623 93 VM----KSYTKKTFCGK--NSTPSQPKLLQAE 118 (133)
Q Consensus 93 ~~----~~~~~~~~~~~--~~~i~~~dl~~a~ 118 (133)
+. ++.+. ..... ...++.+++.+.+
T Consensus 82 R~aLN~LE~a~-~~~~~~~~~~it~~~~~~~~ 112 (300)
T PRK14700 82 RKILNLLERMF-LISTRGDEIYLNKELFDQAV 112 (300)
T ss_pred HHHHHHHHHHH-hhccccCCCccCHHHHHHHH
Confidence 53 22222 11211 2237877777664
No 140
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.15 E-value=0.52 Score=40.35 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred CcEEEEEeeCCC-CCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHHhc-------------------------------
Q psy15623 22 KSIVILGASNFP-WNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILRQ------------------------------- 68 (133)
Q Consensus 22 ~~v~vi~aTn~~-~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~~~------------------------------- 68 (133)
.++.+|+|+|.. ..+.++++.||+.++.++.| +.++|.++++..+..
T Consensus 168 ~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~ 247 (633)
T TIGR02442 168 ARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPS 247 (633)
T ss_pred CCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence 468999999953 46899999999999999877 467888887653320
Q ss_pred CCCCChhcHHHHHHHc--CCCC-H-HHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623 69 VDLASDLDLELVSDQL--EGNA-V-QQKVM-KSYTKKTFCGKNSTPSQPKLLQAERP 120 (133)
Q Consensus 69 ~~~~~~~~~~~la~~t--~G~s-g-adi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~ 120 (133)
..+ ++..++.|+..+ -|.+ . +++.. ..+.+.+...++..++.+|+.+|+.-
T Consensus 248 V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~l 303 (633)
T TIGR02442 248 VRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAEL 303 (633)
T ss_pred CCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 011 112233344433 2332 2 33432 34445556688889999999999763
No 141
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.06 E-value=0.2 Score=39.65 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=41.0
Q ss_pred CCCcEEEEEeeCCCC------------CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623 20 PTKSIVILGASNFPW------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~------------~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~ 68 (133)
+.+...||||+|..+ .+++|++.||-.++.++.|+.+.-.+|+.....+
T Consensus 175 ~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 175 AHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccC
Confidence 344788999999765 3589999999999999999999999999876543
No 142
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.2 Score=38.81 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=51.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.-. +++++|.+|+.|+.+-|.+.+|+. .++|+.|+.++-...++....+. ++..+..++.
T Consensus 111 naLLK~LEepp--------~~t~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~ 178 (313)
T PRK05564 111 NAFLKTIEEPP--------KGVFIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIA 178 (313)
T ss_pred HHHHHHhcCCC--------CCeEEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHH
Confidence 45666666433 256666677889999999999995 89999999988877776554322 2334566676
Q ss_pred HcCCCC
Q psy15623 83 QLEGNA 88 (133)
Q Consensus 83 ~t~G~s 88 (133)
.+.|-.
T Consensus 179 ~~~g~~ 184 (313)
T PRK05564 179 FSDGIP 184 (313)
T ss_pred HcCCCH
Confidence 666633
No 143
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.23 Score=39.70 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..++.-.. ++++|.+|+.++.+.|.+.+|+. .+.+++|+.++-.+++...... ..+..+..++.
T Consensus 159 naLLK~LEepp~--------~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l~~ 226 (365)
T PRK07471 159 NALLKVLEEPPA--------RSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPRAALAA 226 (365)
T ss_pred HHHHHHHhcCCC--------CeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHHHHHHhccc---CCHHHHHHHHH
Confidence 566666765433 56788899999999999888874 7899999999998888775422 12223356777
Q ss_pred HcCCCCHHH
Q psy15623 83 QLEGNAVQQ 91 (133)
Q Consensus 83 ~t~G~sgad 91 (133)
.+.|--+.-
T Consensus 227 ~s~Gsp~~A 235 (365)
T PRK07471 227 LAEGSVGRA 235 (365)
T ss_pred HcCCCHHHH
Confidence 777754433
No 144
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.65 E-value=0.048 Score=41.04 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=49.7
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCC
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGN 87 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~ 87 (133)
++.-+||||++...|.+.++.||-....+..=+.++-..|++...+...+. .+.-...||.++.|-
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 357899999999999999999999999999999999999998877776655 455578899998873
No 145
>KOG0989|consensus
Probab=94.14 E-value=1 Score=35.58 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.|..-||.+.. .+.+|..||.++.|..-+.+|+.+ +.|+.-..+.....|+....+.++. ++.-++.|+
T Consensus 147 ~aLrr~mE~~s~--------~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~ 217 (346)
T KOG0989|consen 147 AALRRTMEDFSR--------TTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA 217 (346)
T ss_pred HHHHHHHhcccc--------ceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456777888655 568889999999999999999876 5565555566666777777665554 344578888
Q ss_pred HHcCCCCHHHHH
Q psy15623 82 DQLEGNAVQQKV 93 (133)
Q Consensus 82 ~~t~G~sgadi~ 93 (133)
+.++| ||+
T Consensus 218 ~~S~G----dLR 225 (346)
T KOG0989|consen 218 KISDG----DLR 225 (346)
T ss_pred HHcCC----cHH
Confidence 87766 775
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.34 Score=37.92 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=55.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.-. +.++|..|+.|+.|-|.+++|+ ..++|++|+.++-.+++........ .+.+...++.
T Consensus 142 NaLLK~LEEPp---------~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~ 209 (314)
T PRK07399 142 NALLKTLEEPG---------NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLA 209 (314)
T ss_pred HHHHHHHhCCC---------CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHH
Confidence 45666666543 2356677788999999999998 6789999999999998887643211 1223577888
Q ss_pred HcCCCCHHHH
Q psy15623 83 QLEGNAVQQK 92 (133)
Q Consensus 83 ~t~G~sgadi 92 (133)
.+.|--+.-+
T Consensus 210 ~a~Gs~~~al 219 (314)
T PRK07399 210 LAQGSPGAAI 219 (314)
T ss_pred HcCCCHHHHH
Confidence 8877555444
No 147
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.86 E-value=0.31 Score=38.49 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=52.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+. |.+++++|..|+.|+.|-|-+++|+.. +.|++|+.++-.+.|... .+.+ ......++.
T Consensus 126 NaLLKtLEE--------Pp~~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~ 192 (334)
T PRK07993 126 NALLKTLEE--------PPENTWFFLACREPARLLATLRSRCRL-HYLAPPPEQYALTWLSRE---VTMS-QDALLAALR 192 (334)
T ss_pred HHHHHHhcC--------CCCCeEEEEEECChhhChHHHHhcccc-ccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHH
Confidence 456666654 334789999999999999999999994 799999988877777532 2222 233455666
Q ss_pred HcCCCCH
Q psy15623 83 QLEGNAV 89 (133)
Q Consensus 83 ~t~G~sg 89 (133)
.+.|--+
T Consensus 193 la~G~~~ 199 (334)
T PRK07993 193 LSAGAPG 199 (334)
T ss_pred HcCCCHH
Confidence 6666444
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.49 E-value=0.28 Score=38.64 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~ 64 (133)
|.||..++. |.+++++|..|+.|+.|-|.+++|+. .+.|+.|+.++-.+.+..
T Consensus 126 NaLLKtLEE--------Pp~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 126 NALLKTLEE--------PAPNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHHHhcC--------CCCCeEEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHHH
Confidence 456666664 33478999999999999999999998 688999999888877754
No 149
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=0.78 Score=36.12 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.=. +++++|.+|+.++.|-|.+++|+.. +.|+.|+.++-.+.|... +.+ ..+...++.
T Consensus 131 NaLLKtLEEPp--------~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~ 196 (319)
T PRK08769 131 NALLKTLEEPS--------PGRYLWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLAQ----GVS-ERAAQEALD 196 (319)
T ss_pred HHHHHHhhCCC--------CCCeEEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHH
Confidence 55666666543 3678888899999999999999875 678888888777666532 222 333556777
Q ss_pred HcCCCCHHHH
Q psy15623 83 QLEGNAVQQK 92 (133)
Q Consensus 83 ~t~G~sgadi 92 (133)
.+.|--+.-+
T Consensus 197 l~~G~p~~A~ 206 (319)
T PRK08769 197 AARGHPGLAA 206 (319)
T ss_pred HcCCCHHHHH
Confidence 7777655444
No 150
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.98 E-value=0.96 Score=34.71 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=44.4
Q ss_pred CcEEEEEeeCCCCCCCHHH----------------------HhccccEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15623 22 KSIVILGASNFPWNIDDAF----------------------LRRLEKRIYVPLPSSSGRQELLRLILRQVDLA 72 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al----------------------~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~ 72 (133)
.+|++-||+|+-+.|+.-. -.||.-.+.|.+|+.++-..|+..+.++..++
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 5899999999999888322 12999999999999999999999999988776
No 151
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.44 E-value=0.27 Score=40.58 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.8
Q ss_pred CcEEEEEeeCCCC----CCCHHHHhccccEEEcCC
Q psy15623 22 KSIVILGASNFPW----NIDDAFLRRLEKRIYVPL 52 (133)
Q Consensus 22 ~~v~vi~aTn~~~----~lD~al~rRfd~~i~i~~ 52 (133)
.++.+|||+|..+ .+|.|++|||.. |++.+
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 4899999999998 899999999965 66654
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.01 E-value=0.44 Score=31.11 Aligned_cols=29 Identities=38% Similarity=0.770 Sum_probs=25.3
Q ss_pred cEEEEEeeCCCC--CCCHHHHhccccEEEcC
Q psy15623 23 SIVILGASNFPW--NIDDAFLRRLEKRIYVP 51 (133)
Q Consensus 23 ~v~vi~aTn~~~--~lD~al~rRfd~~i~i~ 51 (133)
++.+|++||.+. .+++.+..||+.+++++
T Consensus 120 ~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 120 NVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred CeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 788999999887 78999999999888876
No 153
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.85 E-value=1.2 Score=35.13 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+. |.+++++|.+|+.++.|.|.+++|+.. +.|++|+.++-.+.|..... ..+.....++.
T Consensus 125 NaLLKtLEE--------Pp~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~ 191 (325)
T PRK06871 125 NALLKTLEE--------PRPNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEEQQALDWLQAQSS----AEISEILTALR 191 (325)
T ss_pred HHHHHHhcC--------CCCCeEEEEEECChHhCchHHHhhceE-EeCCCCCHHHHHHHHHHHhc----cChHHHHHHHH
Confidence 455555554 334788999999999999999999875 67888988888777765421 11223444455
Q ss_pred HcCCCC
Q psy15623 83 QLEGNA 88 (133)
Q Consensus 83 ~t~G~s 88 (133)
.+.|--
T Consensus 192 l~~g~p 197 (325)
T PRK06871 192 INYGRP 197 (325)
T ss_pred HcCCCH
Confidence 555533
No 154
>PRK09862 putative ATP-dependent protease; Provisional
Probab=91.59 E-value=4 Score=34.26 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=57.2
Q ss_pred CcEEEEEeeCCCC---------------------CCCHHHHhccccEEEcCCCCHH----------HHHHHHHHHH----
Q psy15623 22 KSIVILGASNFPW---------------------NIDDAFLRRLEKRIYVPLPSSS----------GRQELLRLIL---- 66 (133)
Q Consensus 22 ~~v~vi~aTn~~~---------------------~lD~al~rRfd~~i~i~~P~~~----------~R~~il~~~~---- 66 (133)
.++.+|+|+|... .|..+++.|||.+++++.|+.+ .+..|-+...
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~ 415 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARE 415 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHH
Confidence 3789999999742 4788999999999999988532 1222221111
Q ss_pred ----hcCCCCChhc---H----------HH---HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHH
Q psy15623 67 ----RQVDLASDLD---L----------EL---VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 67 ----~~~~~~~~~~---~----------~~---la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~ 119 (133)
++..+..... + .. -+...-|+|++....+...++. ...++..++.+|+.+|+.
T Consensus 416 ~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 416 RQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 0000000000 1 00 1112346777777654444444 447788899999999965
No 155
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=91.30 E-value=3.1 Score=34.06 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=38.2
Q ss_pred CCcEEEEEeeCC-CCCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHH
Q psy15623 21 TKSIVILGASNF-PWNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLIL 66 (133)
Q Consensus 21 ~~~v~vi~aTn~-~~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~ 66 (133)
-.++++|||+|- ...|-|-|+.||...+.+..| +.++|.+|.+.-+
T Consensus 185 pa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred CccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 347999999997 456888899999999999876 7899999986544
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.25 E-value=0.59 Score=40.65 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHHHhhCCCCCC--CCC-CCCcEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCC
Q psy15623 2 KSELLCHMDGIASTT--NAD-PTKSIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLP 53 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~--~~~-~~~~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P 53 (133)
.+.||+.||.-.=.+ +.. .-.++++|+|||... .+.|.++.|||.++.|.+.
T Consensus 570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pL 649 (731)
T TIGR02639 570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPL 649 (731)
T ss_pred HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCC
Confidence 466788887532111 000 113678999998742 2578888899999999999
Q ss_pred CHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623 54 SSSGRQELLRLILRQV---------DLA-SDLDLELVSDQL--EGNAVQQKV 93 (133)
Q Consensus 54 ~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t--~G~sgadi~ 93 (133)
+.++..+|++..+.+. .+. ++.-++.|++.. ..+.++.|+
T Consensus 650 s~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~ 701 (731)
T TIGR02639 650 SEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLA 701 (731)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHH
Confidence 9999999999888532 111 333456677753 456667775
No 157
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.19 E-value=6 Score=31.14 Aligned_cols=67 Identities=7% Similarity=0.131 Sum_probs=57.0
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCC
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNA 88 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~s 88 (133)
++.-+||||.+...|..-+..||.....+..=+.++-.+|++...+.+.+. .+.-..+||+++-|--
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 467799999999999999888999999999999999999999888776665 4455678899888743
No 158
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=1.6 Score=35.05 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=67.7
Q ss_pred CCcEEEEEeeCCCC---CCCHHHHhcc-ccEEEcCCCCHHHHHHHHHHHHhcC---CCCChhcHHHHHHHcCCCCHHHHH
Q psy15623 21 TKSIVILGASNFPW---NIDDAFLRRL-EKRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 21 ~~~v~vi~aTn~~~---~lD~al~rRf-d~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~~~~la~~t~G~sgadi~ 93 (133)
..+|.+|+.+|..+ .+||-+.++| ...|.||+=+.++-..|++.-.+.. +.-++.-+..+|.... ..++|.+
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~~GDAR 232 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AESGDAR 232 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-HcCccHH
Confidence 35789999999864 6888888854 3558999999999999999887542 1112222343443333 3333654
Q ss_pred ---HHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623 94 ---MKSYTKKTFC--GKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 94 ---~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~ 123 (133)
.++..+...+ .+...++.+++..|.++...
T Consensus 233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 2455555554 47788999999999665544
No 159
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.30 E-value=5.7 Score=32.53 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=43.6
Q ss_pred CcEEEEEeeC--CCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH--hcCCCC------ChhcHHHHHHHcCC
Q psy15623 22 KSIVILGASN--FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL--RQVDLA------SDLDLELVSDQLEG 86 (133)
Q Consensus 22 ~~v~vi~aTn--~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~--~~~~~~------~~~~~~~la~~t~G 86 (133)
+.|++||||. ---.|-+|+++|.- ++++.+-+.++-..+++.-+ .+.++. ++.-++.|+..++|
T Consensus 131 G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 131 GTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 3678888774 35579999999874 57777778888888888743 222332 23345667777766
No 160
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=90.06 E-value=8.2 Score=32.98 Aligned_cols=96 Identities=9% Similarity=0.045 Sum_probs=58.1
Q ss_pred cEEEEEeeCCC---CCCCHHHHhccccEEEcCCCCHHHH-------HHHHH--HHHhcCCCCChhcHHHHHHHc--CCC-
Q psy15623 23 SIVILGASNFP---WNIDDAFLRRLEKRIYVPLPSSSGR-------QELLR--LILRQVDLASDLDLELVSDQL--EGN- 87 (133)
Q Consensus 23 ~v~vi~aTn~~---~~lD~al~rRfd~~i~i~~P~~~~R-------~~il~--~~~~~~~~~~~~~~~~la~~t--~G~- 87 (133)
+.++||+-|.. ..|.++++.||+.++.++.|...+- .+|.. ..+.+..++ +..+..+++.+ -|.
T Consensus 136 ~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~ 214 (584)
T PRK13406 136 RFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIA 214 (584)
T ss_pred CcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCC
Confidence 56777763322 3499999999999999998875432 12222 222233332 33344444433 243
Q ss_pred CHH-HHH-HHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 88 AVQ-QKV-MKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 88 sga-di~-~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
|.+ ++. ...+.+.+...++..++.+|+.++..
T Consensus 215 S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 215 SLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred CcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 333 333 34555555668888999999999976
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.69 E-value=1 Score=35.35 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=39.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~ 64 (133)
|.||..|+.-. +.+++|.+|+.++.|-|.+++|+. .++|+.|+.++-.++++.
T Consensus 128 NaLLK~LEEPp--------~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 128 NSLLKFLEEPS--------GGTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHhcCCC--------CCceEEEEeCChHhCcHHHHhhce-eeeCCCCCHHHHHHHHHH
Confidence 45666666543 366777788889999999999876 588888888877666653
No 162
>KOG2035|consensus
Probab=89.46 E-value=6.2 Score=31.08 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=64.3
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
..=+|...|..+.|-+++.+|+= .|.+|-|+.++-..++...+++..+. +..-+..||+.++|---.-|.++++....
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred CceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 34566678888999999999763 58899999999999999999876555 34457889988876444444333332222
Q ss_pred ---HhcCCCCCCHHHHHHHHH
Q psy15623 102 ---FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 102 ---~~~~~~~i~~~dl~~a~~ 119 (133)
...+...+...|++..+.
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~ 256 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQ 256 (351)
T ss_pred cccccccCCCCCCccHHHHHH
Confidence 112224566666665544
No 163
>KOG2227|consensus
Probab=89.27 E-value=1.3 Score=36.91 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=59.7
Q ss_pred CCCcEEEEEeeCCCCCCCHHHHh-cc-----ccEEEcCCCCHHHHHHHHHHHHhcCCCCCh--hcHHHHHHHcCCCCHHH
Q psy15623 20 PTKSIVILGASNFPWNIDDAFLR-RL-----EKRIYVPLPSSSGRQELLRLILRQVDLASD--LDLELVSDQLEGNAVQQ 91 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~~lD~al~r-Rf-----d~~i~i~~P~~~~R~~il~~~~~~~~~~~~--~~~~~la~~t~G~sgad 91 (133)
++.++++||..|..+.=|..+.| +. ...+.|++=+.++..+|++.-+...+.... .-++-.|++..|.|| |
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-D 364 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-D 364 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-h
Confidence 56689999999999999999888 43 467889988999999999999987765533 346778999999887 5
Q ss_pred HH
Q psy15623 92 KV 93 (133)
Q Consensus 92 i~ 93 (133)
++
T Consensus 365 lR 366 (529)
T KOG2227|consen 365 LR 366 (529)
T ss_pred HH
Confidence 53
No 164
>PHA02244 ATPase-like protein
Probab=89.19 E-value=2.2 Score=34.53 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=30.8
Q ss_pred CcEEEEEeeCCC-----------CCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623 22 KSIVILGASNFP-----------WNIDDAFLRRLEKRIYVPLPSSSGRQELL 62 (133)
Q Consensus 22 ~~v~vi~aTn~~-----------~~lD~al~rRfd~~i~i~~P~~~~R~~il 62 (133)
+++-+|+|+|.+ ..+++|++.||- .|+++.|. +.-..|.
T Consensus 220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 220 EDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDE-KIEHLIS 269 (383)
T ss_pred CCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCc-HHHHHHh
Confidence 478999999973 678999999996 69999998 4444444
No 165
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.08 E-value=0.88 Score=35.83 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~ 64 (133)
+.||..|+.... ++.+|.+|+.++.+.+.+.+|+. .+.|++|+.++-.+.|..
T Consensus 131 naLLk~LEep~~--------~~~~Ilvth~~~~ll~ti~SRc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 131 NSLLKVLEEPPP--------QVVFLLVSHAADKVLPTIKSRCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHHHHhCcC--------CCEEEEEeCChHhChHHHHHHhh-hhcCCCCCHHHHHHHHHh
Confidence 567777776642 45677789999999999888874 577888998887777653
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.84 E-value=0.86 Score=39.98 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=59.8
Q ss_pred HHHHHHHhhCCC--CCCCC-CCCCcEEEEEeeCCC-------------------------CCCCHHHHhccccEEEcCCC
Q psy15623 2 KSELLCHMDGIA--STTNA-DPTKSIVILGASNFP-------------------------WNIDDAFLRRLEKRIYVPLP 53 (133)
Q Consensus 2 ~~~lL~~lD~~~--~~~~~-~~~~~v~vi~aTn~~-------------------------~~lD~al~rRfd~~i~i~~P 53 (133)
.+.||+.||.-. ...+. -.-.++++|+|||.. ..+.|.++.|+|.+|.|++.
T Consensus 574 ~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L 653 (758)
T PRK11034 574 FNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_pred HHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCC
Confidence 467888887321 11000 011378899999932 23668999999999999999
Q ss_pred CHHHHHHHHHHHHhc---------CCCC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623 54 SSSGRQELLRLILRQ---------VDLA-SDLDLELVSDQL--EGNAVQQKV 93 (133)
Q Consensus 54 ~~~~R~~il~~~~~~---------~~~~-~~~~~~~la~~t--~G~sgadi~ 93 (133)
+.++..+|+..++.. +.+. ++.-++.|++.. ..+-++.|+
T Consensus 654 ~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~ 705 (758)
T PRK11034 654 STDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMA 705 (758)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHH
Confidence 999999999887742 2222 333356676554 345566664
No 167
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=88.32 E-value=2.2 Score=31.59 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhcccc------------EEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK------------RIYVPLPSSSGRQELLRLILRQVD 70 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~------------~i~i~~P~~~~R~~il~~~~~~~~ 70 (133)
|.||..++. |..++++|.+|..+..+.|-+++|+.. .+.+..-+.++-.+.++. +.+..
T Consensus 72 NaLLK~LEE--------Pp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~ 142 (206)
T PRK08485 72 NALLKILEE--------PPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKEN 142 (206)
T ss_pred HHHHHHhcC--------CCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcc
Confidence 455555554 234778888888899999999998764 566777788888888888 34333
Q ss_pred CC-ChhcHHHHHHHc
Q psy15623 71 LA-SDLDLELVSDQL 84 (133)
Q Consensus 71 ~~-~~~~~~~la~~t 84 (133)
.. ...-...|+...
T Consensus 143 ~~~~~ea~~lIa~la 157 (206)
T PRK08485 143 KLSKEELKELIESLL 157 (206)
T ss_pred cccHHHHHHHHHHHH
Confidence 22 233334444444
No 168
>KOG2028|consensus
Probab=86.46 E-value=14 Score=30.39 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=60.6
Q ss_pred CcEEEEEeeCC--CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh---c-----CCCC------ChhcHHHHHHHcC
Q psy15623 22 KSIVILGASNF--PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR---Q-----VDLA------SDLDLELVSDQLE 85 (133)
Q Consensus 22 ~~v~vi~aTn~--~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~---~-----~~~~------~~~~~~~la~~t~ 85 (133)
+.|.+||||.- --.+..|+++|+-..+-=++| .+.-..||..-+. + .++. ++.-++.|+..++
T Consensus 249 G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~-~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLSRCRVFVLEKLP-VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred CceEEEecccCCCccchhHHHHhccceeEeccCC-HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 46888887743 446899999998655444444 4555566654322 1 1111 1223677899999
Q ss_pred CCCHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHH
Q psy15623 86 GNAVQQKVMKSYTKKTFCGK-----NSTPSQPKLLQAER 119 (133)
Q Consensus 86 G~sgadi~~~~~~~~~~~~~-----~~~i~~~dl~~a~~ 119 (133)
|=.-+-|.+++..+.+.+.. +..++.+|+.+++.
T Consensus 328 GDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq 366 (554)
T KOG2028|consen 328 GDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQ 366 (554)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHh
Confidence 87777776666655555533 33788888887753
No 169
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=84.97 E-value=1.6 Score=34.99 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=38.8
Q ss_pred cEEEEEeeCCC-------CCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHHhcC
Q psy15623 23 SIVILGASNFP-------WNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILRQV 69 (133)
Q Consensus 23 ~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~~~~ 69 (133)
..++|++||.. ....+|+++|+. .|++|.| +.++-.+|.+..+.+.
T Consensus 277 d~liia~sNe~e~~~~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 277 DGLIIAHSNESEWQRFKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred ceEEEEeCCHHHHhhhhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 46899999988 367899999999 8999988 7788889999888653
No 170
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=84.69 E-value=3.6 Score=32.03 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELL 62 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il 62 (133)
|.||..|+.= .+++++|..|+.++.|-|-+++|+. ++.|+. +.+.-.+++
T Consensus 122 NaLLKtLEEP--------p~~t~~iL~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 122 NSLLKVIEEP--------QSEIYIFLLTNDENKVLPTIKSRTQ-IFHFPK-NEAYLIQLL 171 (290)
T ss_pred HHHHHHhcCC--------CCCeEEEEEECChhhCchHHHHcce-eeeCCC-cHHHHHHHH
Confidence 4556666543 3467888999999999999999985 466755 444444444
No 171
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=84.63 E-value=23 Score=29.74 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=56.8
Q ss_pred CcEEEEEeeCCC-----C------------------CCCHHHHhccccEEEcCCCCHH-------------HHHHHHHHH
Q psy15623 22 KSIVILGASNFP-----W------------------NIDDAFLRRLEKRIYVPLPSSS-------------GRQELLRLI 65 (133)
Q Consensus 22 ~~v~vi~aTn~~-----~------------------~lD~al~rRfd~~i~i~~P~~~-------------~R~~il~~~ 65 (133)
.++.+|++||.- . .|...++.|||..++++.++.+ -|..+.+..
T Consensus 337 a~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar 416 (499)
T TIGR00368 337 ARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAR 416 (499)
T ss_pred CCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHH
Confidence 378899999952 1 4888899999999999976443 233333221
Q ss_pred Hh------cC---CCCChhc-----------------HHHHHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHH
Q psy15623 66 LR------QV---DLASDLD-----------------LELVSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQA 117 (133)
Q Consensus 66 ~~------~~---~~~~~~~-----------------~~~la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a 117 (133)
-. .. ....... ++..+. .-++|.+-...+...++.++ .+...+..+|+.+|
T Consensus 417 ~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA 495 (499)
T TIGR00368 417 EIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-KLGLSSRATHRILKVARTIADLKEEKNISREHLAEA 495 (499)
T ss_pred HHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 11 10 1111111 111222 23577777765555554444 67778999999988
Q ss_pred H
Q psy15623 118 E 118 (133)
Q Consensus 118 ~ 118 (133)
+
T Consensus 496 ~ 496 (499)
T TIGR00368 496 I 496 (499)
T ss_pred H
Confidence 6
No 172
>KOG1514|consensus
Probab=84.62 E-value=7.9 Score=33.88 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCCcEEEEEeeCCCCCCCHHHHh-----ccc-cEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHH
Q psy15623 20 PTKSIVILGASNFPWNIDDAFLR-----RLE-KRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~~lD~al~r-----Rfd-~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~ 93 (133)
++.+++||+..|.-+. ++.++- |.. .+|.|.+=+.++-++|+..-+++...-.+.-++-+|++-...||.-=+
T Consensus 538 ~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH
Confidence 4568999999997554 444443 554 567787889999999999999876322233355556666656665444
Q ss_pred H--HHHHHHHHhcCCC---------CCCHHHHHHHHHhhhhcc
Q psy15623 94 M--KSYTKKTFCGKNS---------TPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 94 ~--~~~~~~~~~~~~~---------~i~~~dl~~a~~~~~~s~ 125 (133)
+ .|..+...+..+. .++..|+.+|+.++-.+.
T Consensus 617 aldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 617 ALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 3 5666666664443 488999999988776543
No 173
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=84.35 E-value=14 Score=30.07 Aligned_cols=96 Identities=23% Similarity=0.201 Sum_probs=58.8
Q ss_pred EEEEeeCC------------CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHH
Q psy15623 25 VILGASNF------------PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQ 91 (133)
Q Consensus 25 ~vi~aTn~------------~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgad 91 (133)
++|.|||+ |+-|+..++.|.-. |...+-+.++-++|++.-.+...+. ++.-++.|++...--|-+=
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllI-I~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRY 400 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLI-ISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRY 400 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhhheeE-EecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHH
Confidence 66777775 78888888887643 2333336788889998887654433 3444666766654333332
Q ss_pred HHHHHHHHHH--HhcCCCCCCHHHHHHHHHhh
Q psy15623 92 KVMKSYTKKT--FCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 92 i~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~ 121 (133)
-..+..-+.. ...+...+..+|++++.+-|
T Consensus 401 a~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 401 AVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 2233222222 23456689999999996644
No 174
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=84.33 E-value=4 Score=31.30 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD 70 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~ 70 (133)
|.||.-++. |.+++++|..|..+..|.|-+++|+. .+.++.|....-.+.+..++....
T Consensus 107 NALLKtLEE--------PP~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 107 NSCLKILED--------APKNSYIFLITSRAASIISTIRSRCF-KINVRSSILHAYNELYSQFIQPIA 165 (263)
T ss_pred HHHHHhhcC--------CCCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCHHHHHHHHHHhccccc
Confidence 455555554 33477888888889999999999986 477899988888888887776553
No 175
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.99 E-value=2 Score=38.14 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=50.6
Q ss_pred cEEEEEeeCCCCC-------------------------CCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC--------
Q psy15623 23 SIVILGASNFPWN-------------------------IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------- 69 (133)
Q Consensus 23 ~v~vi~aTn~~~~-------------------------lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------- 69 (133)
+.++|+|||.... +.|.++.|+|..+.|.+++.+...+|+...+...
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6789999998322 3466777999999999999999999998877421
Q ss_pred -CCC-ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623 70 -DLA-SDLDLELVSDQL--EGNAVQQKVM 94 (133)
Q Consensus 70 -~~~-~~~~~~~la~~t--~G~sgadi~~ 94 (133)
.+. ++.-++.|++.. ..+..+.|..
T Consensus 788 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~ 816 (852)
T TIGR03346 788 ITLELSDAALDFLAEAGYDPVYGARPLKR 816 (852)
T ss_pred CeecCCHHHHHHHHHhCCCCCCCchhHHH
Confidence 111 233356677663 2566777753
No 176
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=83.34 E-value=17 Score=27.41 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=47.0
Q ss_pred cccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 44 LEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 44 fd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
-...+++..|+..+...+++..++..+.. +...+..|+..++| ....+..-..-......+ ..++.+++...+.
T Consensus 102 ~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~-d~~~l~~el~KL~~~~~~-~~It~e~I~~~~~ 176 (302)
T TIGR01128 102 NAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEG-NLLAIAQELEKLALYAPD-GKITLEDVEEAVS 176 (302)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc-HHHHHHHHHHHHHhhCCC-CCCCHHHHHHHHh
Confidence 45678889999999999999999877654 45557778877764 333332211111122223 3588888876654
No 177
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=82.61 E-value=4.5 Score=31.53 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~ 64 (133)
|.||..|+.-.+ .+++|..|+.++.|-|.+.+|+.. ++|++|+.++-.+.+..
T Consensus 108 NaLLK~LEEPp~--------~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 108 NALLKTIEEPPK--------DTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHHHHHhhCCCC--------CeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHHHHHHHH
Confidence 456666665443 567777777889999999888765 88988888877766654
No 178
>PRK10865 protein disaggregation chaperone; Provisional
Probab=82.56 E-value=2.9 Score=37.20 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=38.3
Q ss_pred cEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623 23 SIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 23 ~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~ 68 (133)
+.++|+|||... .+.|+++.|+|..+.|.+++.+....|++.++..
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 467899999731 2457888999999999999999999999888854
No 179
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.50 E-value=4 Score=36.11 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=39.3
Q ss_pred HHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------C--CC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623 38 DAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------D--LA-SDLDLELVSDQL--EGNAVQQKV 93 (133)
Q Consensus 38 ~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------~--~~-~~~~~~~la~~t--~G~sgadi~ 93 (133)
|.++.|+|.+|.|.+.+.++-.+|++..+.+. + +. ++.-.+.|++.. ..|-++.|.
T Consensus 704 peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~ 771 (821)
T CHL00095 704 PEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLR 771 (821)
T ss_pred HHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHH
Confidence 56777999999999999999999998887542 1 11 223356677763 345566664
No 180
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=2.6 Score=36.86 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=39.4
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~ 66 (133)
++|++|+|.|..+.|+..++.|.+ .|+++==..++..+|-+.|+
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhc
Confidence 479999999999999999999997 47887778899999999888
No 181
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.37 E-value=12 Score=33.34 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC--------CCC---ChhcHHHHHHHcCC--CCHHHHHH
Q psy15623 36 IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV--------DLA---SDLDLELVSDQLEG--NAVQQKVM 94 (133)
Q Consensus 36 lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~--------~~~---~~~~~~~la~~t~G--~sgadi~~ 94 (133)
+.|+++.|++ .|.|.+.+.++-.+|+...+... ++. ++.-++.|++...+ |-++.|..
T Consensus 751 f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r 821 (852)
T TIGR03345 751 FKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDA 821 (852)
T ss_pred ccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHH
Confidence 5577788998 89999999999999998877442 221 23335677877743 56777753
No 182
>PRK13531 regulatory ATPase RavA; Provisional
Probab=78.94 E-value=4.4 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=29.9
Q ss_pred cEEEEEeeCCCC---CCCHHHHhccccEEEcCCCC-HHHHHHHHHHH
Q psy15623 23 SIVILGASNFPW---NIDDAFLRRLEKRIYVPLPS-SSGRQELLRLI 65 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD~al~rRfd~~i~i~~P~-~~~R~~il~~~ 65 (133)
..++++|||... ...+|+..||-.++.+|+|+ .++-.+|+...
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 356666777422 23359999999999999996 56657777653
No 183
>KOG2004|consensus
Probab=77.04 E-value=4.6 Score=35.59 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=37.6
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~ 66 (133)
++|++|+|.|..+.|+++++.|.+. |+++==..++...|-+.|+
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEV-IELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhhhhhe-eeccCccHHHHHHHHHHhh
Confidence 4799999999999999999999874 6666556788888888887
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=76.76 E-value=3.9 Score=28.70 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=27.2
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhcccc
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK 46 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~ 46 (133)
|.||..|+.-.. ++++|.+|+.++.|-|.+++|+-.
T Consensus 120 NaLLK~LEepp~--------~~~fiL~t~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 120 NALLKTLEEPPE--------NTYFILITNNPSKILPTIRSRCQV 155 (162)
T ss_dssp HHHHHHHHSTTT--------TEEEEEEES-GGGS-HHHHTTSEE
T ss_pred HHHHHHhcCCCC--------CEEEEEEECChHHChHHHHhhceE
Confidence 567777776544 779999999999999999998653
No 185
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=76.66 E-value=59 Score=29.52 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=29.8
Q ss_pred CcEEEEEeeCCC-------------CCCCHHHHhccccEEEc-CCCCHHHHHHH
Q psy15623 22 KSIVILGASNFP-------------WNIDDAFLRRLEKRIYV-PLPSSSGRQEL 61 (133)
Q Consensus 22 ~~v~vi~aTn~~-------------~~lD~al~rRfd~~i~i-~~P~~~~R~~i 61 (133)
.++-||||+|.. -.|+++++.|||-.+-+ +.|+.+.=..|
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHH
Confidence 478999999974 24789999999987554 67776554444
No 186
>KOG1942|consensus
Probab=74.46 E-value=30 Score=27.75 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH--HHhcCCCCC
Q psy15623 33 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK--TFCGKNSTP 109 (133)
Q Consensus 33 ~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~--~~~~~~~~i 109 (133)
|+-|++.++.|+-..-..+.| .++-++|++.-.+...+. .+.-+..++.....-|-+--..+..-+. +...++..+
T Consensus 348 PhGip~dllDRl~Iirt~~y~-~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i 426 (456)
T KOG1942|consen 348 PHGIPPDLLDRLLIIRTLPYD-EEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEI 426 (456)
T ss_pred CCCCCHHHhhheeEEeeccCC-HHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCcee
Confidence 677899999887654444444 456667777666544333 2334555665543333322222222111 122455678
Q ss_pred CHHHHHHHHH
Q psy15623 110 SQPKLLQAER 119 (133)
Q Consensus 110 ~~~dl~~a~~ 119 (133)
..+|+++.-+
T Consensus 427 ~v~dvee~~~ 436 (456)
T KOG1942|consen 427 SVEDVEEVTE 436 (456)
T ss_pred ecccHHHHHH
Confidence 8888887755
No 187
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=73.82 E-value=28 Score=27.37 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=66.1
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCC--CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC--Chh----
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFP--WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA--SDL---- 75 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~--~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~--~~~---- 75 (133)
++|+.+..+.+.- .-.+|.+||-.-. =.-|+-+-+||+-..-=.-...++-..++..+-..+|+. ++.
T Consensus 167 ~~Ln~LK~L~NeL----~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~ 242 (302)
T PF05621_consen 167 EFLNALKFLGNEL----QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPE 242 (302)
T ss_pred HHHHHHHHHhhcc----CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHH
Confidence 4556666554322 3356666654322 234677777998644322234456677888887776655 222
Q ss_pred cHHHHHHHcCCCCHHHHHHH-HHHHHHHhcCCCCCCHHHHHHH
Q psy15623 76 DLELVSDQLEGNAVQQKVMK-SYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 76 ~~~~la~~t~G~sgadi~~~-~~~~~~~~~~~~~i~~~dl~~a 117 (133)
-...|-..|+|..|.=..-+ .++..+...+...|+.+.+...
T Consensus 243 la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 243 LARRIHERSEGLIGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 23567788899988766543 4444556677777888777653
No 188
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=73.19 E-value=4.1 Score=32.05 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=29.9
Q ss_pred cEEEEEeeCCCC-------------CCCHHHHhccccEEEc-CCCCHHHHHHHHHHHHhc
Q psy15623 23 SIVILGASNFPW-------------NIDDAFLRRLEKRIYV-PLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 23 ~v~vi~aTn~~~-------------~lD~al~rRfd~~i~i-~~P~~~~R~~il~~~~~~ 68 (133)
+.-|+||+|... .+++.++.|||-.+.+ ..|+.+.=..|.+..+..
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 567899999766 5899999999998776 778887777777766644
No 189
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=72.24 E-value=52 Score=28.64 Aligned_cols=98 Identities=8% Similarity=0.053 Sum_probs=63.2
Q ss_pred cEEEEEeeCC-----CCCCCHHHHhccccEEEc--CCC-CHHHHHHHHHHHHhcC------CCCChhcHHH----HHHHc
Q psy15623 23 SIVILGASNF-----PWNIDDAFLRRLEKRIYV--PLP-SSSGRQELLRLILRQV------DLASDLDLEL----VSDQL 84 (133)
Q Consensus 23 ~v~vi~aTn~-----~~~lD~al~rRfd~~i~i--~~P-~~~~R~~il~~~~~~~------~~~~~~~~~~----la~~t 84 (133)
...+|++-|+ ....|+.++.=|....++ ++| +.+.|...|+.+.+.+ +.-...-+.. .++.+
T Consensus 276 d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~A 355 (647)
T COG1067 276 DLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRA 355 (647)
T ss_pred ceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 4566666665 344566666645554555 678 8899999999888543 2222222333 33333
Q ss_pred C-----CCCHHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHh
Q psy15623 85 E-----GNAVQQKVMKSYTKKTFCG--KNSTPSQPKLLQAERP 120 (133)
Q Consensus 85 ~-----G~sgadi~~~~~~~~~~~~--~~~~i~~~dl~~a~~~ 120 (133)
+ -.+++||..++..+...+. ++..++.+|+++|++.
T Consensus 356 g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 356 GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred cccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 2 3688999988777766663 4668999999999775
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.04 E-value=6.9 Score=24.85 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=23.4
Q ss_pred cEEEEEeeCC-CCCCCHHHHhccccEEEcCCC
Q psy15623 23 SIVILGASNF-PWNIDDAFLRRLEKRIYVPLP 53 (133)
Q Consensus 23 ~v~vi~aTn~-~~~lD~al~rRfd~~i~i~~P 53 (133)
+..+|+++|. ....+..+.+|++.++.++.|
T Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 116 NLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred CCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 6788888887 455555555599999998765
No 191
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=70.71 E-value=14 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCC
Q psy15623 20 PTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLP 53 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P 53 (133)
|.+++++|..|+.++.|-|-+++|+.. +.++.|
T Consensus 115 Pp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 115 PPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred CCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 344789999999999999999999865 556555
No 192
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=69.73 E-value=13 Score=32.98 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=60.2
Q ss_pred CHHHHHHHhhCCCCCCCCC---CCCcEEEEEeeCCCCC----------------------------CCHHHHhccccEEE
Q psy15623 1 MKSELLCHMDGIASTTNAD---PTKSIVILGASNFPWN----------------------------IDDAFLRRLEKRIY 49 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~---~~~~v~vi~aTn~~~~----------------------------lD~al~rRfd~~i~ 49 (133)
|.|-||+-||.=.-++++. .=.+.++|+|||--.. ..|+++.|+|.+|.
T Consensus 609 V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~ 688 (786)
T COG0542 609 VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIP 688 (786)
T ss_pred HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEe
Confidence 3577888888533222111 1125789999996421 24566679999999
Q ss_pred cCCCCHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623 50 VPLPSSSGRQELLRLILRQV---------DLA-SDLDLELVSDQL--EGNAVQQKV 93 (133)
Q Consensus 50 i~~P~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t--~G~sgadi~ 93 (133)
|.+-+.+.-.+|+...+... .+. ++.-.+.|++.. +.|.++-|+
T Consensus 689 F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~ 744 (786)
T COG0542 689 FNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLR 744 (786)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHH
Confidence 99999999999999888542 111 233345667666 356666664
No 193
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=68.29 E-value=35 Score=29.57 Aligned_cols=96 Identities=15% Similarity=0.277 Sum_probs=56.7
Q ss_pred cEEEEEeeCCC--CCCCHHHHhccc---cEEEcC--CC-CHHHHHHHHHHHHhcCC----CC--ChhcHHHHHHHc---C
Q psy15623 23 SIVILGASNFP--WNIDDAFLRRLE---KRIYVP--LP-SSSGRQELLRLILRQVD----LA--SDLDLELVSDQL---E 85 (133)
Q Consensus 23 ~v~vi~aTn~~--~~lD~al~rRfd---~~i~i~--~P-~~~~R~~il~~~~~~~~----~~--~~~~~~~la~~t---~ 85 (133)
++-||++||.. ..+||++..||. .++++. .| +.+.+..+++.+.+... .. +..-+..|.+.. .
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~a 356 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRA 356 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHh
Confidence 57888888884 678999999986 556654 23 46777777765553321 11 122233333322 1
Q ss_pred C------CCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623 86 G------NAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE 118 (133)
Q Consensus 86 G------~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~ 118 (133)
| ...++|..++..+...+ .+...++.+|+.+|.
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHH
Confidence 2 34677776655555444 455567888877664
No 194
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=68.21 E-value=52 Score=25.25 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred cccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH---HhcCCCCCCHHHHHHHHH
Q psy15623 44 LEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT---FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 44 fd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~---~~~~~~~i~~~dl~~a~~ 119 (133)
....++++.|+..+....++..++..+.. +...+..|++.++| |+..+...... .+.+.. ++.+++...+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~----d~~~l~~El~KL~l~~~~~~-It~~~I~~~i~ 211 (340)
T PRK05574 137 KAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEG----NLLALAQELEKLALLYPDGK-ITLEDVEEAVP 211 (340)
T ss_pred CceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----hHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHh
Confidence 34778889999999999999999876655 34456777777654 44332222211 223333 88888876654
No 195
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.51 E-value=6.5 Score=28.00 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHhccccEEEcCCCCHHHHHHHHHHHHhcC-CC-CChhcHHHHHHHcCCCC
Q psy15623 40 FLRRLEKRIYVPLPSSSGRQELLRLILRQV-DL-ASDLDLELVSDQLEGNA 88 (133)
Q Consensus 40 l~rRfd~~i~i~~P~~~~R~~il~~~~~~~-~~-~~~~~~~~la~~t~G~s 88 (133)
+..|+.. +++++-+.++-.+++...++.. .+ .++.+++.+...|.|.-
T Consensus 179 ~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 179 LFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp TTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred cccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 3347777 9998889999999999987665 11 25778899999998853
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=66.89 E-value=57 Score=25.21 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=56.5
Q ss_pred cEEEEEeeCCCCCC-CHHHHh---ccccEEEcCCCCHHHHHHHHHHHHhcCC----CCChhcHHHHHHHcCCCCHHHHHH
Q psy15623 23 SIVILGASNFPWNI-DDAFLR---RLEKRIYVPLPSSSGRQELLRLILRQVD----LASDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 23 ~v~vi~aTn~~~~l-D~al~r---Rfd~~i~i~~P~~~~R~~il~~~~~~~~----~~~~~~~~~la~~t~G~sgadi~~ 94 (133)
+|+.+|-...-..+ -+.+.. |++.+|+.++-+.++-...++..+++.. +-++.-+..+...+.| .|.-|..
T Consensus 166 ~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~ 244 (269)
T COG3267 166 SIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINN 244 (269)
T ss_pred eeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHH
Confidence 47777764432211 122222 8988888888898888888888886643 3355567888889998 5666654
Q ss_pred HHH--HHHHHhcCCCCCCHHH
Q psy15623 95 KSY--TKKTFCGKNSTPSQPK 113 (133)
Q Consensus 95 ~~~--~~~~~~~~~~~i~~~d 113 (133)
.+- ...+...++..++...
T Consensus 245 ~~~~Al~~a~~a~~~~v~~a~ 265 (269)
T COG3267 245 LATLALDAAYSAGEDGVSEAE 265 (269)
T ss_pred HHHHHHHHHHHcCCCccchhh
Confidence 433 3333445666666544
No 197
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=66.81 E-value=16 Score=27.67 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHH
Q psy15623 21 TKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 63 (133)
Q Consensus 21 ~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~ 63 (133)
..+..+|.+||.|+.|-|-+.+|+.. +.|++|+...+....+
T Consensus 137 ~~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRSRCQR-IRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCeEEEEEcCChhhccchhhhccee-eecCCchHHHHHHHhh
Confidence 34678999999999999988888764 6666666555544444
No 198
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=65.50 E-value=62 Score=25.13 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=47.4
Q ss_pred cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 46 KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 46 ~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
..+.+..|+..+...++...++..++. +...+..|++.+.| .-..+.+-..-....+.+...|+.+|+.+.+.
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~-dl~~l~~EleKL~ly~~~~~~It~edV~~lv~ 208 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLGG-DRLASRNEIEKLALYAHGKGEITLDDVRAVVG 208 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Confidence 356777899999999999999887665 45557788888765 33333321111222334455788888877644
No 199
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=64.04 E-value=23 Score=29.03 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=40.6
Q ss_pred CCHHHHhccccEEEcCCCCHHHHHHHHHHH----Hhc---------CCCC-ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623 36 IDDAFLRRLEKRIYVPLPSSSGRQELLRLI----LRQ---------VDLA-SDLDLELVSDQL--EGNAVQQKVM 94 (133)
Q Consensus 36 lD~al~rRfd~~i~i~~P~~~~R~~il~~~----~~~---------~~~~-~~~~~~~la~~t--~G~sgadi~~ 94 (133)
+.|+++-|+|..+.|.+-+.++..+|+..- ++. ..+. ++.-++.||+.. .++-++-|+.
T Consensus 301 ~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~ 375 (413)
T TIGR00382 301 LIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRS 375 (413)
T ss_pred hHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHH
Confidence 346677799999999999999999998762 321 1111 334467788874 4677777764
No 200
>KOG2228|consensus
Probab=62.65 E-value=15 Score=29.76 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.7
Q ss_pred CCCcEEEEEeeCCCCCCCHHHHh---ccccE-EEcCCC-CHHHHHHHHHHHH
Q psy15623 20 PTKSIVILGASNFPWNIDDAFLR---RLEKR-IYVPLP-SSSGRQELLRLIL 66 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~~lD~al~r---Rfd~~-i~i~~P-~~~~R~~il~~~~ 66 (133)
...++.+||.|.+.+.++.=-.| ||..+ |++++| +..+-..+++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 45699999999998887766556 99987 776554 6788888888887
No 201
>KOG2680|consensus
Probab=61.55 E-value=85 Score=25.32 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCC
Q psy15623 33 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTP 109 (133)
Q Consensus 33 ~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i 109 (133)
|+-|+-.++.|.-. |...+-+.++-+.||+.-+....+. .+.-+..|......-|-+--..+..++.. .......+
T Consensus 339 phGiP~D~lDR~lI-I~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v 417 (454)
T KOG2680|consen 339 PHGIPIDLLDRMLI-ISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVV 417 (454)
T ss_pred CCCCcHHHhhhhhe-eecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCcee
Confidence 67788888877643 3333447788899999888654433 22223334433332222222223333333 33555678
Q ss_pred CHHHHHHHHH
Q psy15623 110 SQPKLLQAER 119 (133)
Q Consensus 110 ~~~dl~~a~~ 119 (133)
..+|+..+-+
T Consensus 418 ~~~di~r~y~ 427 (454)
T KOG2680|consen 418 EVDDIERVYR 427 (454)
T ss_pred ehhHHHHHHH
Confidence 8888888855
No 202
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=59.86 E-value=78 Score=24.35 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=50.7
Q ss_pred cEEEEEeeCCCCC---CCHHHHhccccEEEcCCC---CHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH-
Q psy15623 23 SIVILGASNFPWN---IDDAFLRRLEKRIYVPLP---SSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM- 94 (133)
Q Consensus 23 ~v~vi~aTn~~~~---lD~al~rRfd~~i~i~~P---~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~- 94 (133)
.++|+.+++.++. +. ..+..+....++..| +.++...+++..+++.+.. +...+..|+..+.| .-..+.+
T Consensus 95 ~~li~~~~~~~d~r~k~~-k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~-dl~~l~~E 172 (326)
T PRK07452 95 THLLLTNTKKPDGRLKST-KLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGN-DSRRLYNE 172 (326)
T ss_pred cEEEEEeCCCcchHHHHH-HHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc-cHHHHHHH
Confidence 4555554443321 21 222334557776554 4456677788888776655 44556777777753 3333322
Q ss_pred HHHHHHHHh-cCCCCCCHHHHHHHHH
Q psy15623 95 KSYTKKTFC-GKNSTPSQPKLLQAER 119 (133)
Q Consensus 95 ~~~~~~~~~-~~~~~i~~~dl~~a~~ 119 (133)
+...+ ..+ .....++.+++...+.
T Consensus 173 leKL~-ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 173 LEKLA-LYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHH-HhccCCCCccCHHHHHHHhc
Confidence 22222 222 3456788888887654
No 203
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=57.79 E-value=41 Score=26.22 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCC
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPL 52 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~ 52 (133)
|.||..|+.- .+++++|..|+.++.|.|.+++|+.. +.|++
T Consensus 113 NaLLK~LEEP--------p~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~ 153 (290)
T PRK05917 113 SAFLKVLEDP--------PQHGVIILTSAKPQRLPPTIRSRSLS-IHIPM 153 (290)
T ss_pred HHHHHHhhcC--------CCCeEEEEEeCChhhCcHHHHhcceE-EEccc
Confidence 5566666653 33778888889999999999998765 34443
No 204
>KOG1969|consensus
Probab=57.24 E-value=48 Score=29.56 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=43.1
Q ss_pred EEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH
Q psy15623 26 ILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 26 vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~ 94 (133)
||+.+| +..-||+.. =|-..|+|.+|....-.+=|+..+...... ....+..|++.|+ .||+.
T Consensus 441 IICICN--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRs 506 (877)
T KOG1969|consen 441 IICICN--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRS 506 (877)
T ss_pred EEEEec--CccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHH
Confidence 567777 567788877 599999999998887777777777543332 2233555555554 58874
No 205
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=57.11 E-value=29 Score=25.93 Aligned_cols=45 Identities=9% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChh---cHHHHHHHcCCCCHHHHHHH
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDL---DLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~---~~~~la~~t~G~sgadi~~~ 95 (133)
+.|..+++..|+..++...+.+++. |-..+.+...|.|+.||...
T Consensus 61 GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~ 108 (216)
T PF11264_consen 61 GYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSW 108 (216)
T ss_pred CCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6788899999999999887766432 44556666789999999644
No 206
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=56.06 E-value=27 Score=22.20 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=37.1
Q ss_pred EEEEeeCCCCCCCHHHHh---ccccEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623 25 VILGASNFPWNIDDAFLR---RLEKRIYVPLPSSSGRQELLRLILRQVD 70 (133)
Q Consensus 25 ~vi~aTn~~~~lD~al~r---Rfd~~i~i~~P~~~~R~~il~~~~~~~~ 70 (133)
+||.++|-|..+--.+.| -..--++++-++..-|..+|+...+..+
T Consensus 2 ~Viv~~~vP~~lRG~Ltrwl~Ei~~GVyVg~~s~rVRe~lW~~v~~~~~ 50 (86)
T PF09707_consen 2 TVIVLEAVPPRLRGFLTRWLLEIRPGVYVGNVSARVRERLWERVTEWIG 50 (86)
T ss_pred EEEEEecCChhHhchhhheeEecCCCcEEcCCCHHHHHHHHHHHHhhCC
Confidence 578888888877777777 4556688999999999999999987643
No 207
>KOG0741|consensus
Probab=52.45 E-value=95 Score=26.95 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=52.2
Q ss_pred CCcEEEEEeeCCCCCCCHHHH-hccccEEEcCCC-CHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCC-CCHHHHHHHHH
Q psy15623 21 TKSIVILGASNFPWNIDDAFL-RRLEKRIYVPLP-SSSGRQELLRLILRQVDLASDLDLELVSDQLEG-NAVQQKVMKSY 97 (133)
Q Consensus 21 ~~~v~vi~aTn~~~~lD~al~-rRfd~~i~i~~P-~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G-~sgadi~~~~~ 97 (133)
..+.+|++||.+..-+-..=+ ..|+..|++|.- +.++-.+++... ..-++.+...++++..+ +..--|+.+..
T Consensus 639 g~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~~~vgIKklL~ 714 (744)
T KOG0741|consen 639 GRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKKVNVGIKKLLM 714 (744)
T ss_pred CceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHhccccchhHHHHHH
Confidence 357899999987554443322 289999999864 335655555443 11123334444443332 22333444444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 98 TKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 98 ~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
...+.......-....|...+++.
T Consensus 715 lie~a~q~e~~~rv~~~~~~m~~~ 738 (744)
T KOG0741|consen 715 LIEMARQDEQEYRVRKFLALMEEE 738 (744)
T ss_pred HHHHHhccCccchHHHHHHHHHhh
Confidence 444445455555566666665543
No 208
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=51.23 E-value=16 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=13.8
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhcc
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRL 44 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRf 44 (133)
+.+||||-|..+ .|++|++.||
T Consensus 103 pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 103 PFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-EEEEEE-TT--S------HHHHTTS
T ss_pred cEEEEEecCccccCceecCCHHHhccc
Confidence 688999999766 7888888888
No 209
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=49.80 E-value=31 Score=28.17 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=34.1
Q ss_pred EEEEEeeC------------CCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHH
Q psy15623 24 IVILGASN------------FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSD 82 (133)
Q Consensus 24 v~vi~aTn------------~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 82 (133)
-+||.||| .|+-|+..++.|+= .|...+.+.++-.+|++.-++...+. ++.-++.|++
T Consensus 308 PiiIlATNRg~~~irGt~~~sphGiP~DlLDRll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ 378 (398)
T PF06068_consen 308 PIIILATNRGITKIRGTDIISPHGIPLDLLDRLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTK 378 (398)
T ss_dssp -EEEEEES-SEEE-BTTS-EEETT--HHHHTTEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHH
T ss_pred cEEEEecCceeeeccCccCcCCCCCCcchHhhcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHH
Confidence 36777888 57778888888764 35566678999999999999776544 2333444443
No 210
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=49.23 E-value=48 Score=21.60 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=38.4
Q ss_pred cEEEEEeeCCCCCCCHHHHh---ccccEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623 23 SIVILGASNFPWNIDDAFLR---RLEKRIYVPLPSSSGRQELLRLILRQVD 70 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~r---Rfd~~i~i~~P~~~~R~~il~~~~~~~~ 70 (133)
..+||.++|-|..+--.+.| -..-=++++-++..-|..||+...+..+
T Consensus 2 ~M~Viv~~~vP~~lRG~Lt~wllEv~~GVyVg~~S~rVRd~lW~~v~~~~~ 52 (97)
T PRK11558 2 SMLVVVTENVPPRLRGRLAVWLLEVRAGVYVGDVSRRIREMIWQQVTQLAE 52 (97)
T ss_pred cEEEEEeccCChhHhhhhhhheEecCCCcEEcCCCHHHHHHHHHHHHHhCC
Confidence 35788899988887777776 3556688999999999999999887654
No 211
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=48.75 E-value=73 Score=26.48 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=35.5
Q ss_pred CcEEEEEeeC----CCCCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623 22 KSIVILGASN----FPWNIDDAFLRRLEKRIYVPLPSSSGRQELL 62 (133)
Q Consensus 22 ~~v~vi~aTn----~~~~lD~al~rRfd~~i~i~~P~~~~R~~il 62 (133)
.++++|++-- .|+++-|.+.-||..++++..++.++-..||
T Consensus 300 ~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 300 DHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred CceeEEecCCcCCCChhhccHHHhCccceEEECCCCCHHHHHHHh
Confidence 3788887653 4788889999999999999999999999998
No 212
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=48.20 E-value=23 Score=27.06 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=30.9
Q ss_pred cEEEEEeeCCCC---CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623 23 SIVILGASNFPW---NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~ 68 (133)
++.+|||.|.+. .|++.++|.|- .+.++.|+.+.-..|+..++..
T Consensus 148 ~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 148 DIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp SEEEEEEESSTTT--SHHHHHHTTEE-EEE----TCCHHHHHHHHHHHH
T ss_pred eeEEEEecCCCCCCCCCChHHhhheE-EEEecCCChHHHHHHHHHHHhh
Confidence 578889988532 36666666665 7888999999999999888864
No 213
>PRK05907 hypothetical protein; Provisional
Probab=47.80 E-value=1.3e+02 Score=23.46 Aligned_cols=72 Identities=8% Similarity=-0.076 Sum_probs=47.8
Q ss_pred EEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 48 IYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 48 i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+++++++..+-...+...+++.+.. +......++.++.|.+-..+..-..-....+..+..|+.+++.+.+.
T Consensus 129 ~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 129 GEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVV 201 (311)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhc
Confidence 4788888888888888888776655 45557888888855455544432222222346677899999887754
No 214
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.04 E-value=73 Score=26.01 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=36.7
Q ss_pred CCcEEEEEee----CCCCCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623 21 TKSIVILGAS----NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELL 62 (133)
Q Consensus 21 ~~~v~vi~aT----n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il 62 (133)
.+.+++||+- ..|++|=|.+.-||..++++..-+.+.-..||
T Consensus 300 TdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 300 TDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred cceEEEEecCceecCChhhcChhhcCCCceEEEcccCCHHHHHHHH
Confidence 3478899875 45999999999999999999999999999887
No 215
>KOG0482|consensus
Probab=46.43 E-value=1e+02 Score=26.65 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=32.9
Q ss_pred CcEEEEEeeCCCC-------------CCCHHHHhccccEEEc-CCCCHHHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPW-------------NIDDAFLRRLEKRIYV-PLPSSSGRQELLRLIL 66 (133)
Q Consensus 22 ~~v~vi~aTn~~~-------------~lD~al~rRfd~~i~i-~~P~~~~R~~il~~~~ 66 (133)
.+.-++||.|-.+ .|+.|+++|||...-+ ..|+.+.=..+-++..
T Consensus 481 AR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 481 ARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred hhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhH
Confidence 3566778877543 5899999999977666 6788877776665544
No 216
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=46.29 E-value=1.6e+02 Score=23.79 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=47.3
Q ss_pred cEEEEEeeCCC-------CCCCHHHHhccc-cEEEcCCCC--HHHHHHHHHHHHhcC----CCC----ChhcHHHHHHHc
Q psy15623 23 SIVILGASNFP-------WNIDDAFLRRLE-KRIYVPLPS--SSGRQELLRLILRQV----DLA----SDLDLELVSDQL 84 (133)
Q Consensus 23 ~v~vi~aTn~~-------~~lD~al~rRfd-~~i~i~~P~--~~~R~~il~~~~~~~----~~~----~~~~~~~la~~t 84 (133)
++-+|++|+.. ..+.+.+..|+. ..|++|+-. .++...++..++... +.. +..-+..|...
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~- 347 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL- 347 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC-
Confidence 56788888754 245556666665 356665543 456666666666432 111 12223333333
Q ss_pred CCCC--HHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 85 EGNA--VQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 85 ~G~s--gadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+|. -++|++.+..+...+. ...++.+|+-..
T Consensus 348 -~wpgNvreL~~~~~~~~~~~~-~~~i~~~~l~~~ 380 (463)
T TIGR01818 348 -RWPGNVRQLENLCRWLTVMAS-GDEVLVSDLPAE 380 (463)
T ss_pred -CCCChHHHHHHHHHHHHHhCC-CCcccHHhchHH
Confidence 443 3555555444444443 345777776543
No 217
>PF12846 AAA_10: AAA-like domain
Probab=45.56 E-value=32 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=33.8
Q ss_pred CcEEEEEeeCCCCCCC-----HHHHhccccEEEcCCCCHHHHH
Q psy15623 22 KSIVILGASNFPWNID-----DAFLRRLEKRIYVPLPSSSGRQ 59 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD-----~al~rRfd~~i~i~~P~~~~R~ 59 (133)
.++.++.+|..|.+++ ++++.-+..++-+..++.+...
T Consensus 252 ~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~ 294 (304)
T PF12846_consen 252 YGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAE 294 (304)
T ss_pred cCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHH
Confidence 3789999999999999 8999999999999999877776
No 218
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=45.23 E-value=48 Score=21.17 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=35.1
Q ss_pred EEEEeeCCCCCCCHHHHh---ccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623 25 VILGASNFPWNIDDAFLR---RLEKRIYVPLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 25 ~vi~aTn~~~~lD~al~r---Rfd~~i~i~~P~~~~R~~il~~~~~~ 68 (133)
+||.++|-|..+--.+.+ -..-=++++-++..-|..||+...+.
T Consensus 2 ~Viv~~~vP~~lRG~Lt~wllEv~~GVyVg~~s~rVRe~lW~~v~~~ 48 (87)
T TIGR01873 2 LVVVTENVPPRLRGRLALWLLEPRAGVYVGGVSASVRERIWDYLAQH 48 (87)
T ss_pred EEEEEccCChhHhchhhhheeecCCCcEEcCCCHHHHHHHHHHHHHh
Confidence 578888887777666666 34556889999999999999998776
No 219
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=44.35 E-value=18 Score=21.44 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHhhhhc
Q psy15623 108 TPSQPKLLQAERPFRRS 124 (133)
Q Consensus 108 ~i~~~dl~~a~~~~~~s 124 (133)
.|+.+||..|++..++|
T Consensus 29 ~it~~DF~~Al~~~kpS 45 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPS 45 (62)
T ss_dssp HBCHHHHHHHHHTCGGS
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57888888888877776
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=44.29 E-value=28 Score=30.99 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=37.0
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV 69 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~ 69 (133)
.+=+||||..-+ .=|+|+-|||.. |.+.-|+.++-..||+-+-.++
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHH
Confidence 577888887532 469999999985 8899999999999998776543
No 221
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=43.56 E-value=67 Score=23.88 Aligned_cols=68 Identities=12% Similarity=-0.069 Sum_probs=39.2
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC----CCChhcHHHHHHHcCCCCHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD----LASDLDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~----~~~~~~~~~la~~t~G~sgadi~ 93 (133)
+.-+|.||....... ..- .-+..++++..+.++-.+++........ ...+.....|++.+.|. |--|.
T Consensus 129 ~~kilvTTR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~ 200 (287)
T PF00931_consen 129 GSKILVTTRDRSVAG-SLG-GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALK 200 (287)
T ss_dssp S-EEEEEESCGGGGT-THH-SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHH
T ss_pred ccccccccccccccc-ccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 445666777532211 111 1267899998899999999998875433 11223457899998763 44443
No 222
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=43.15 E-value=20 Score=22.04 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH
Q psy15623 52 LPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 52 ~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~ 94 (133)
.|.++.-.+|++.++.+ .+. ....+..+.. +||++.||..
T Consensus 2 ~p~~~~i~~i~~~~~~~-~~~~~~~~~~~l~~--~G~s~~~Il~ 42 (89)
T PF08542_consen 2 WPPPEVIEEILESCLNG-DFKEARKKLYELLV--EGYSASDILK 42 (89)
T ss_dssp S--HHHHHHHHHHHHHT-CHHHHHHHHHHHHH--TT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHH--cCCCHHHHHH
Confidence 57888889999999876 111 1112333433 4999999964
No 223
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=42.87 E-value=53 Score=24.40 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChh---cHHHHHHHcCCCCHHHHHHH
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDL---DLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~---~~~~la~~t~G~sgadi~~~ 95 (133)
+.|..+++..|+..++...+.+++. |-..+.+...|.|+.||...
T Consensus 64 GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~ 111 (206)
T PLN03060 64 GYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADF 111 (206)
T ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6788899999999999888776332 34556666679999998643
No 224
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=42.84 E-value=1.8e+02 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=26.7
Q ss_pred CcEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCHHHHHH----HHHHHHh
Q psy15623 22 KSIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSSSGRQE----LLRLILR 67 (133)
Q Consensus 22 ~~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~~~R~~----il~~~~~ 67 (133)
.++-+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHHHHHH
Confidence 367888888865 345555555554 25566666666654 4555553
No 225
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=42.05 E-value=1.1e+02 Score=20.82 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=33.3
Q ss_pred cEEEEEeeCCCCCCCH--HHHh---ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcC
Q psy15623 23 SIVILGASNFPWNIDD--AFLR---RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLE 85 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~--al~r---Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~ 85 (133)
.+++|..++ +.+|. .+.. .--..++++.|+..+...+++..++..+.. +...+..|+..++
T Consensus 91 ~~~lii~~~--~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~ 157 (172)
T PF06144_consen 91 DCILIIFSE--EKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLIERVG 157 (172)
T ss_dssp SEEEEEEES---S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHT
T ss_pred CEEEEEEeC--CchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 444554444 44442 2333 344578889999999999999999877655 3344566666654
No 226
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=41.55 E-value=21 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=29.9
Q ss_pred cEEEEEeeCCCC-------------CCCHHHHhccccEEEc-CCCCHHHHHHHHH
Q psy15623 23 SIVILGASNFPW-------------NIDDAFLRRLEKRIYV-PLPSSSGRQELLR 63 (133)
Q Consensus 23 ~v~vi~aTn~~~-------------~lD~al~rRfd~~i~i-~~P~~~~R~~il~ 63 (133)
+.-|+||.|-.+ +|++.+++|||-.+-+ .-|+.+.=+.|-.
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHH
Confidence 556788888776 6899999999988777 4677664444333
No 227
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=41.46 E-value=2e+02 Score=23.63 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCCCcEEEEEeeCCCCCCCHHHHh-------ccccEEEcCCC--CHHHHHHHHHHHHh
Q psy15623 19 DPTKSIVILGASNFPWNIDDAFLR-------RLEKRIYVPLP--SSSGRQELLRLILR 67 (133)
Q Consensus 19 ~~~~~v~vi~aTn~~~~lD~al~r-------Rfd~~i~i~~P--~~~~R~~il~~~~~ 67 (133)
.....|-+|+||| .+++.+++. |+...|++|+- -.+++..+.+.|++
T Consensus 210 ~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 210 PRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred CcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHH
Confidence 4566899999999 567777766 56666666543 23555556666664
No 228
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=41.26 E-value=1.1e+02 Score=24.94 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=41.6
Q ss_pred CCHHHHhccccEEEcCCCCHHHHHHHHHH----HHhc---------CCCC-ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623 36 IDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILRQ---------VDLA-SDLDLELVSDQL--EGNAVQQKVM 94 (133)
Q Consensus 36 lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~~~---------~~~~-~~~~~~~la~~t--~G~sgadi~~ 94 (133)
+.|+++-|+|..+.|...+.+...+|+.. ++++ ..+. ++.-++.|++.. .++-++-|..
T Consensus 295 f~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrr 369 (412)
T PRK05342 295 LIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRS 369 (412)
T ss_pred hhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHH
Confidence 46777779999999999999999999972 3321 1111 344467788863 5677777753
No 229
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=40.84 E-value=1.9e+02 Score=23.22 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=26.3
Q ss_pred cEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCHHHHHH----HHHHHHh
Q psy15623 23 SIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSSSGRQE----LLRLILR 67 (133)
Q Consensus 23 ~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~~~R~~----il~~~~~ 67 (133)
++-+|+|||.. ..+.+.+..|+.. +.+.+|...+|.+ +...++.
T Consensus 278 ~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~l~ 332 (457)
T PRK11361 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHFLQ 332 (457)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHHHH
Confidence 57899999864 2344455555533 6677776666644 4444443
No 230
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=40.81 E-value=27 Score=23.01 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCC
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPS 54 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~ 54 (133)
.+++..+.....+- +||+++.++....++..++++.+..|++..=+
T Consensus 55 ~~ll~~i~~~~~~i------PVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t 100 (115)
T PF03709_consen 55 QELLDKIRERNFGI------PVFLLAERDTTEDLPAEVLGEVDGFIWLFEDT 100 (115)
T ss_dssp HHHHHHHHHHSTT-------EEEEEESCCHHHCCCHHHHCCESEEEETTTTT
T ss_pred HHHHHHHHHhCCCC------CEEEEecCCCcccCCHHHHhhccEEEEecCCC
Confidence 35666666655544 89999998899999999999999999886443
No 231
>KOG2383|consensus
Probab=40.43 E-value=13 Score=30.70 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.5
Q ss_pred cEEEEEeeCC-CCCC
Q psy15623 23 SIVILGASNF-PWNI 36 (133)
Q Consensus 23 ~v~vi~aTn~-~~~l 36 (133)
+||++||+|| |++|
T Consensus 224 GvVlvATSNR~P~dL 238 (467)
T KOG2383|consen 224 GVVLVATSNRAPEDL 238 (467)
T ss_pred CeEEEEeCCCChHHH
Confidence 8999999999 5544
No 232
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=39.64 E-value=1e+02 Score=19.71 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=28.9
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE 118 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~ 118 (133)
+-...++|++-...++..+..++ .+...|+.+|+.+|+
T Consensus 54 ~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl 93 (96)
T PF13335_consen 54 AAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEAL 93 (96)
T ss_pred HHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHH
Confidence 33456799999987666666655 677889999999986
No 233
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=37.26 E-value=87 Score=18.29 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623 62 LRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKS 96 (133)
Q Consensus 62 l~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~ 96 (133)
|+.|....+.-.+.|+..|+++|. +|..+++.--
T Consensus 13 L~~Yy~~h~~L~E~DL~~L~~kS~-ms~qqVr~WF 46 (56)
T PF11569_consen 13 LEDYYLKHKQLQEEDLDELCDKSR-MSYQQVRDWF 46 (56)
T ss_dssp HHHHHHHT----TTHHHHHHHHTT---HHHHHHHH
T ss_pred HHHHHHHcCCccHhhHHHHHHHHC-CCHHHHHHHH
Confidence 555555555556789999999985 9999987543
No 234
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=36.81 E-value=1.3e+02 Score=26.46 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=55.6
Q ss_pred CHHHHh---ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHH--HHHHHHHhcCCCCCCH
Q psy15623 37 DDAFLR---RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMK--SYTKKTFCGKNSTPSQ 111 (133)
Q Consensus 37 D~al~r---Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~--~~~~~~~~~~~~~i~~ 111 (133)
|+.++| .+-+.--+|.-+.+.+..|-+.|..--.-... .. ...+...|.++|.++ .+.+.+...-...++.
T Consensus 507 ~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~---~~-~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 507 DFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSAL---VE-EKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhcccc---cc-ccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 677887 56666544777889999999988843221111 22 455666889999764 3334444455678999
Q ss_pred HHHHHHHHhhhh
Q psy15623 112 PKLLQAERPFRR 123 (133)
Q Consensus 112 ~dl~~a~~~~~~ 123 (133)
+|..+|++-++.
T Consensus 583 eD~~eAi~lv~~ 594 (682)
T COG1241 583 EDVDEAIRLVDF 594 (682)
T ss_pred HHHHHHHHHHHH
Confidence 999999886553
No 235
>PF12944 DUF3840: Protein of unknown function (DUF3840)
Probab=36.73 E-value=14 Score=23.74 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=23.1
Q ss_pred ccccEEEcCCCCHHHHHHHHHHHHh
Q psy15623 43 RLEKRIYVPLPSSSGRQELLRLILR 67 (133)
Q Consensus 43 Rfd~~i~i~~P~~~~R~~il~~~~~ 67 (133)
||..+|+...|-.+-|.+.++.-++
T Consensus 56 rfeSHIEc~kpykELRlev~k~RLk 80 (104)
T PF12944_consen 56 RFESHIECRKPYKELRLEVGKQRLK 80 (104)
T ss_pred chHHHHHhcCchHHHhHHHHHHHHH
Confidence 9999999999999999999987764
No 236
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=35.50 E-value=3.5e+02 Score=25.12 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCCh--hc-HHHHHHHcCCCCH
Q psy15623 24 IVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASD--LD-LELVSDQLEGNAV 89 (133)
Q Consensus 24 v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~--~~-~~~la~~t~G~sg 89 (133)
.-||.||. |..+++ ..++.++++.|+.++..+++..+..+.....+ .+ ..++++.+.|.--
T Consensus 325 srIIiTTr-----d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 325 SRIIVITK-----DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred cEEEEEeC-----cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH
Confidence 34555666 455555 57899999999999999999888754322211 11 3457778887653
No 237
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=34.25 E-value=86 Score=17.32 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHH
Q psy15623 57 GRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 57 ~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~ 94 (133)
+-..+|..++...+..+......||..+ |++...|..
T Consensus 10 ~q~~~L~~~f~~~~~p~~~~~~~la~~l-~l~~~~V~~ 46 (57)
T PF00046_consen 10 EQLKVLEEYFQENPYPSKEEREELAKEL-GLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHH-TSSHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccc-ccccccccc
Confidence 3345555555555556677788999888 799999864
No 238
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=33.31 E-value=88 Score=17.14 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHH
Q psy15623 56 SGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 56 ~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~ 94 (133)
.....+|+.++...+..+..+...||..+ |++...|..
T Consensus 9 ~~~~~~Le~~f~~~~~P~~~~~~~la~~~-~l~~~qV~~ 46 (59)
T cd00086 9 PEQLEELEKEFEKNPYPSREEREELAKEL-GLTERQVKI 46 (59)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHH-CcCHHHHHH
Confidence 44567778777777777788899999998 499999864
No 239
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=32.34 E-value=2.4e+02 Score=21.89 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=44.4
Q ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 47 RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 47 ~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
.+++..|+..+-..+++..+++.+.. +...+..|+..++ .|+..+......++.-...++.+|+...+.
T Consensus 129 ~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g----~dl~~l~~ELeKL~ly~~~It~edV~~~v~ 198 (328)
T PRK08487 129 FVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHN----EDLALAANELEKLAILNEPITLKDIQELVF 198 (328)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC----cHHHHHHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 58888899988899999999877655 4445666777665 355433332222221122688888877653
No 240
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=31.15 E-value=1.7e+02 Score=19.65 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHh-----ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623 31 NFPWNIDDAFLR-----RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFC 103 (133)
Q Consensus 31 n~~~~lD~al~r-----Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~~ 103 (133)
..+..+||.+.+ .|.....=+--+..+|.-|--..+-..+....+...--+..-.|.|+.+|+..+......+
T Consensus 26 ~~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~ 103 (123)
T TIGR02425 26 AATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYA 103 (123)
T ss_pred hcccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 335678888888 3555555455577777777666665544333344444445558999999986555444433
No 241
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=30.07 E-value=36 Score=27.27 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.3
Q ss_pred cEEEEEeeCC-CCCC
Q psy15623 23 SIVILGASNF-PWNI 36 (133)
Q Consensus 23 ~v~vi~aTn~-~~~l 36 (133)
+|++|+|||+ |++|
T Consensus 158 gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 158 GVVLVATSNRPPEDL 172 (362)
T ss_pred CCEEEecCCCChHHH
Confidence 7999999998 4444
No 242
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=29.61 E-value=1.1e+02 Score=16.96 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHhhhhcccccccCC
Q psy15623 106 NSTPSQPKLLQAERPFRRSRVLLFTGY 132 (133)
Q Consensus 106 ~~~i~~~dl~~a~~~~~~s~~~~~~~~ 132 (133)
....-.+.+..|++.|++..-+-.+|.
T Consensus 22 ~~g~~~~~t~~Av~~fQ~~~gL~~tG~ 48 (57)
T PF01471_consen 22 VDGIFDPETREAVKAFQKANGLPVTGV 48 (57)
T ss_dssp TTSBSHHHHHHHHHHHHHHTTS-SSSS
T ss_pred CCCCcCHHHHHHHHHHHHHcCcCCCCc
Confidence 345667888888999988777766653
No 243
>COG1485 Predicted ATPase [General function prediction only]
Probab=29.15 E-value=32 Score=27.79 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.9
Q ss_pred cEEEEEeeCC-CCCCC
Q psy15623 23 SIVILGASNF-PWNID 37 (133)
Q Consensus 23 ~v~vi~aTn~-~~~lD 37 (133)
+|++++|||. |++|=
T Consensus 161 GV~lvaTSN~~P~~LY 176 (367)
T COG1485 161 GVVLVATSNTAPDNLY 176 (367)
T ss_pred CcEEEEeCCCChHHhc
Confidence 7999999998 55543
No 244
>KOG1968|consensus
Probab=28.60 E-value=1.6e+02 Score=26.74 Aligned_cols=66 Identities=18% Similarity=0.006 Sum_probs=47.1
Q ss_pred EEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH
Q psy15623 25 VILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 25 ~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~ 94 (133)
=+|.+.|..+.-..--+.|...-++|+.|+.+.+..-+..++...... ..-.++++.+.+ ++||+.
T Consensus 461 Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQ 527 (871)
T ss_pred CeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHH
Confidence 356677776666665555666889999999999988888877543322 345577788776 778864
No 245
>PF07424 TrbM: TrbM; InterPro: IPR009989 This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulphonate (TSA) degradation [].
Probab=28.19 E-value=1.8e+02 Score=20.89 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=48.4
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC-CChhcHHHHHHHcCCCCHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL-ASDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~~~~la~~t~G~sgadi~~ 94 (133)
-|+.++..++|..=+|++.+-|..+..-+-.+...|+.+|...-...+- .-..-.+.|+.-...+++..|-.
T Consensus 12 avLCL~~~~~~~EC~~~~~~yfsI~~kk~~~T~~aR~~FL~~Cp~~~~~~~m~~Lv~ai~ngagrCda~~LN~ 84 (165)
T PF07424_consen 12 AVLCLAGGSRPSECSPALKRYFSIKKKKPSKTIDARKNFLNLCPTADSDPEMPKLVNAIANGAGRCDAEYLNR 84 (165)
T ss_pred eeeEecCCCCcccccHHHHhhceeecCChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCCCcCHHHHHH
Confidence 4777888889999999999989866554444678888888776422110 11112355666667788888854
No 246
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=27.82 E-value=54 Score=18.85 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=16.0
Q ss_pred cEEEcCCCCHHHHHHHHHHHHh
Q psy15623 46 KRIYVPLPSSSGRQELLRLILR 67 (133)
Q Consensus 46 ~~i~i~~P~~~~R~~il~~~~~ 67 (133)
..|.=-+|+..+|+.+|+.++.
T Consensus 15 ~~Vk~~l~~~~~RR~FWe~~~~ 36 (60)
T PF10414_consen 15 ERVKQRLPDFAERRRFWERFFD 36 (60)
T ss_dssp HHHHHH-SSHHHHHHHHHHHT-
T ss_pred HHHHHHCCCchHHHHHHHHHHc
Confidence 3344457999999999999984
No 247
>PRK07914 hypothetical protein; Reviewed
Probab=27.45 E-value=2.9e+02 Score=21.31 Aligned_cols=91 Identities=9% Similarity=0.083 Sum_probs=53.1
Q ss_pred cEEEEEeeCCCCCCCHHHHh---ccc-cEEEcCCC-CHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLR---RLE-KRIYVPLP-SSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS 96 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~r---Rfd-~~i~i~~P-~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~ 96 (133)
.++|+.+++. .-...+.. ... ..+++..| +..+....++..+++.++. +..-...|++.+.| |+..+.
T Consensus 95 t~lil~~~~~--~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~----dl~~l~ 168 (320)
T PRK07914 95 TVLVVVHSGG--GRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGS----DLRELA 168 (320)
T ss_pred eEEEEEecCC--cchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCc----cHHHHH
Confidence 4555544432 23334322 343 37788888 9999999999999887655 34446667766653 454332
Q ss_pred HHHHHHh-cCCCCCCHHHHHHHHH
Q psy15623 97 YTKKTFC-GKNSTPSQPKLLQAER 119 (133)
Q Consensus 97 ~~~~~~~-~~~~~i~~~dl~~a~~ 119 (133)
.....++ .....|+.+++.+.+.
T Consensus 169 ~EleKL~~~~~~~It~e~V~~~v~ 192 (320)
T PRK07914 169 SACSQLVADTGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHcC
Confidence 2222222 2235688888776643
No 248
>COG4909 PduC Propanediol dehydratase, large subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.14 E-value=67 Score=26.18 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=44.3
Q ss_pred CHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHH
Q psy15623 37 DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 37 D~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~ 93 (133)
|-.++.+|--+..+.+--.++-..+=..-+.++-++.++--+.|+..|.|++++-|.
T Consensus 58 dfdlidhfiarygidl~raeevmamdsvklanmlcdpnvpre~iv~lttamtpakiv 114 (554)
T COG4909 58 DFDLIDHFIARYGIDLERAEEVMAMDSVKLANMLCDPNVPRETIVRLTTAMTPAKIV 114 (554)
T ss_pred chhHHHHHHHHhCCChhhhHHHhhhhHHHHHHHhcCCCCChHHheehhhcCCHHHHH
Confidence 344566777777887777777766666666677777888889999999999999996
No 249
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=26.19 E-value=91 Score=24.48 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=27.0
Q ss_pred CcEEEEEeeCCC-------CCCCHHHHhccc-cEEEcCCCC--HHHHHHHHHHHHh
Q psy15623 22 KSIVILGASNFP-------WNIDDAFLRRLE-KRIYVPLPS--SSGRQELLRLILR 67 (133)
Q Consensus 22 ~~v~vi~aTn~~-------~~lD~al~rRfd-~~i~i~~P~--~~~R~~il~~~~~ 67 (133)
.+|-+|++||.. ..+.+.+..||. ..|++|+-. .++...+++.++.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 467899999863 245566777875 345554432 2444455556554
No 250
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=26.12 E-value=1.8e+02 Score=18.36 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHH
Q psy15623 58 RQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 58 R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~ 95 (133)
+.+||..+-........+.+..|+++. |++..+++..
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l-~~~~~~v~~a 85 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQL-GMSENEVRKA 85 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHS-TS-HHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHh-CcCHHHHHHH
Confidence 444554443324445678999999999 9999998643
No 251
>PRK07217 replication factor A; Reviewed
Probab=26.09 E-value=38 Score=26.75 Aligned_cols=37 Identities=14% Similarity=0.326 Sum_probs=30.9
Q ss_pred CCHHHHh-ccccEE-EcCCCCHHHHHHHHHHHHhcCCCC
Q psy15623 36 IDDAFLR-RLEKRI-YVPLPSSSGRQELLRLILRQVDLA 72 (133)
Q Consensus 36 lD~al~r-Rfd~~i-~i~~P~~~~R~~il~~~~~~~~~~ 72 (133)
+|..=+. |++.-+ +|..|-.|+++.++..|+++....
T Consensus 22 v~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~~ 60 (311)
T PRK07217 22 VSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGID 60 (311)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 3455555 999999 999999999999999999887665
No 252
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.06 E-value=60 Score=24.57 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=22.8
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhc
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRR 43 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rR 43 (133)
+.+|++.+..+...+ +++++ |-+|+.+|++.+-|
T Consensus 144 vl~fm~~~r~l~d~g------KvIil--Tvhp~~l~e~~~~r 177 (235)
T COG2874 144 VLNFMTFLRKLSDLG------KVIIL--TVHPSALDEDVLTR 177 (235)
T ss_pred HHHHHHHHHHHHhCC------CEEEE--EeChhhcCHHHHHH
Confidence 345666666666544 45444 66799999988875
No 253
>TIGR02557 HpaP type III secretion protein HpaP. This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence.
Probab=24.21 E-value=85 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCCHHHHh---------ccccEEEcCCCCHHHHHHHHHH
Q psy15623 35 NIDDAFLR---------RLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 35 ~lD~al~r---------Rfd~~i~i~~P~~~~R~~il~~ 64 (133)
.||++++- +|+..+.|..++.+.|.-|+..
T Consensus 140 ~lD~~lLp~ttL~L~LS~f~LsLRF~t~~~~tR~ll~~h 178 (201)
T TIGR02557 140 DLDPKLLPETTLHLRLSPFTLSLRFETPDPRTRHLLSTH 178 (201)
T ss_pred eCChhhcCCceEEEEeccceEEEEecCCChHHHHHHHhh
Confidence 37888864 8999999999999999988763
No 254
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=23.90 E-value=88 Score=22.07 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHhhCCCCCCC---CCCCCcEEEEEeeCCCCCCC
Q psy15623 2 KSELLCHMDGIASTTN---ADPTKSIVILGASNFPWNID 37 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~---~~~~~~v~vi~aTn~~~~lD 37 (133)
.+.||+.||+-.=..+ .=.-.++++|+|||.-....
T Consensus 96 ~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~ 134 (171)
T PF07724_consen 96 QNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEI 134 (171)
T ss_dssp HHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHH
T ss_pred HHHHHHHhcccceecccceEEEeCCceEEEecccccchh
Confidence 3567777764221100 00224799999999755433
No 255
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.89 E-value=3e+02 Score=21.28 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHH
Q psy15623 50 VPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 50 i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~ 95 (133)
++.| .++|+++|..+--...++.+..++.+-+...-+++.++-..
T Consensus 136 ~~~P-eeeR~E~L~~~~~~~~~~geelfe~lDe~F~rLip~E~gki 180 (315)
T COG4030 136 IAVP-EEEREELLSIIDVIASLSGEELFEKLDELFSRLIPSEVGKI 180 (315)
T ss_pred ccCC-hHHHHHHHHhcCccccccHHHHHHHHHHHHhhcCHHHHHHH
Confidence 3456 68888888877544344444445555555555666666433
No 256
>PF09483 HpaP: Type III secretion protein (HpaP); InterPro: IPR013390 This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear []. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence.
Probab=23.72 E-value=90 Score=22.80 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCHHHHh---------ccccEEEcCCCCHHHHHHHHHH
Q psy15623 36 IDDAFLR---------RLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 36 lD~al~r---------Rfd~~i~i~~P~~~~R~~il~~ 64 (133)
|||+++. +|...+.|...+.+.|.-|+..
T Consensus 125 LDpaiLp~TtL~L~LS~f~LsLRFdt~d~~tr~LL~~h 162 (185)
T PF09483_consen 125 LDPAILPETTLNLRLSPFQLSLRFDTRDPETRELLSTH 162 (185)
T ss_pred CChhhccCceEEEEeccceEEEEeeCCChHHHHHHHhh
Confidence 8999987 8999999999999999888754
No 257
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.72 E-value=1.1e+02 Score=21.76 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.7
Q ss_pred EEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHH
Q psy15623 25 VILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQ 83 (133)
Q Consensus 25 ~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 83 (133)
+||.+|..|+.+++..+++=-..|.+..|-..+ ..+.++..++|++..-+.
T Consensus 90 iVIsat~~~~ii~~~~~~~~~viIDla~prdvd--------~~~~~~~G~~d~~~~~~~ 140 (168)
T cd01080 90 IVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD--------KSGGKLVGDVDFESAKEK 140 (168)
T ss_pred EEEEcCCCCceecHHHccCCeEEEEccCCCccc--------ccCCCeeCCcCHHHHHhh
Confidence 677888888888888776544567777664322 333345566777665555
No 258
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=23.24 E-value=4.5e+02 Score=22.03 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=25.9
Q ss_pred CcEEEEEeeCCCC-------CCCHHHHhccccEEEcCCCCHHHHH----HHHHHHHh
Q psy15623 22 KSIVILGASNFPW-------NIDDAFLRRLEKRIYVPLPSSSGRQ----ELLRLILR 67 (133)
Q Consensus 22 ~~v~vi~aTn~~~-------~lD~al~rRfd~~i~i~~P~~~~R~----~il~~~~~ 67 (133)
.+|-+|++|+.+- .+.+.+..|+.. +.+.+|...+|. .+++.++.
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHH
Confidence 3577888888642 244556667654 555566555554 34445543
No 259
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=23.22 E-value=2.2e+02 Score=22.30 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCh---hcHHHHHHHcCCCCHHHHHH
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASD---LDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~---~~~~~la~~t~G~sgadi~~ 94 (133)
+.|..+++..|+..++...+.+++ .|-..+.+...|.++.||..
T Consensus 117 GY~Pee~~~~IF~Alc~a~g~Dp~qyr~dA~~l~~~A~~~s~~~l~~ 163 (283)
T PLN00047 117 GYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARSQTGSSLVD 163 (283)
T ss_pred cCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 678889999999999988877633 23455566667899999864
No 260
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=22.91 E-value=1e+02 Score=21.68 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.9
Q ss_pred cEEEcCCCCHHHHHHHHHHHH
Q psy15623 46 KRIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 46 ~~i~i~~P~~~~R~~il~~~~ 66 (133)
..+.||.|+.|.|.++.+..-
T Consensus 80 i~v~iP~~T~E~R~~l~k~~k 100 (165)
T PF01765_consen 80 IRVPIPPPTEERRKELVKQAK 100 (165)
T ss_dssp EEEE--SSSHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 466778889999999987653
No 261
>PRK13266 Thf1-like protein; Reviewed
Probab=22.68 E-value=2.5e+02 Score=21.18 Aligned_cols=44 Identities=9% Similarity=0.240 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChh---cHHHHHHHcCCCCHHHHHH
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDL---DLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~---~~~~la~~t~G~sgadi~~ 94 (133)
+.|..+++..||..++...+.+++. |-..+.+...|.|..||..
T Consensus 66 GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~ 112 (225)
T PRK13266 66 GYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILS 112 (225)
T ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 6778899999999999888776332 3445556667899999864
No 262
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=22.44 E-value=1.8e+02 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=35.5
Q ss_pred CcEEEEEeeC----CCCCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623 22 KSIVILGASN----FPWNIDDAFLRRLEKRIYVPLPSSSGRQELL 62 (133)
Q Consensus 22 ~~v~vi~aTn----~~~~lD~al~rRfd~~i~i~~P~~~~R~~il 62 (133)
.++++|++-- .|+++=|.+.-||..++++..++.++-..||
T Consensus 298 ~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 298 DHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred CceeEEecCCcCCCChhhccHHHhCccceEEECCCCCHHHHHHHh
Confidence 3788887754 4778888999999999999999999999998
No 263
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=21.63 E-value=2.7e+02 Score=20.81 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChh---cHHHHHHHcCCCCHHHHHHH
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDL---DLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~---~~~~la~~t~G~sgadi~~~ 95 (133)
+.|..+++..||..++...+.+++. |-..+.+...|.|..||...
T Consensus 66 GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~ 113 (214)
T TIGR03060 66 GYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSW 113 (214)
T ss_pred CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6778899999999999887766332 34445556678899988643
No 264
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=21.60 E-value=67 Score=24.70 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=19.6
Q ss_pred cEEEEEeeCCCCCC---CHHHHhccccEEEcC
Q psy15623 23 SIVILGASNFPWNI---DDAFLRRLEKRIYVP 51 (133)
Q Consensus 23 ~v~vi~aTn~~~~l---D~al~rRfd~~i~i~ 51 (133)
...+|.+||.+-.+ |.+++||+ ..|.|+
T Consensus 172 ~~~~i~~tN~~P~~~~~~~a~~RR~-~vi~f~ 202 (304)
T TIGR01613 172 KFTLVQSTNHLPRIRGFDGGIKRRL-RIIPFT 202 (304)
T ss_pred eeEEEEEcCCCCccCCCChhheeeE-EEEecc
Confidence 46688888885554 57999987 355554
No 265
>PRK07369 dihydroorotase; Provisional
Probab=21.53 E-value=4.4e+02 Score=21.33 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=46.5
Q ss_pred CCCHHHHhccccEEEcCCC--CHHHHHHHHHHHHhcC---------CCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623 35 NIDDAFLRRLEKRIYVPLP--SSSGRQELLRLILRQV---------DLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFC 103 (133)
Q Consensus 35 ~lD~al~rRfd~~i~i~~P--~~~~R~~il~~~~~~~---------~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~~ 103 (133)
.++......++....+.+| +.+.|+.+|+.+..+. |...+.....+.+...|++|.++..-......
T Consensus 264 ~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~~~-- 341 (418)
T PRK07369 264 LLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNL-- 341 (418)
T ss_pred hccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHHHH--
Confidence 3555555456655666655 8899999999997532 22211111134566789999998643222111
Q ss_pred cCCCCCCHHHHHHHH
Q psy15623 104 GKNSTPSQPKLLQAE 118 (133)
Q Consensus 104 ~~~~~i~~~dl~~a~ 118 (133)
.....++.+++.+.+
T Consensus 342 v~~~~i~l~~~v~~~ 356 (418)
T PRK07369 342 VETGELSALQLWQAL 356 (418)
T ss_pred HHcCCCCHHHHHHHH
Confidence 122346666666553
No 266
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.50 E-value=4.1e+02 Score=20.91 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=21.0
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
+.++||.+.-|.......+...-.+...+.+|+-.+++
T Consensus 184 kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~ 221 (321)
T PRK07066 184 KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR 221 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35677777777542222222333445567777777755
No 267
>PHA02577 2 DNA end protector protein; Provisional
Probab=21.43 E-value=1.3e+02 Score=21.76 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=45.7
Q ss_pred HHhccccEEEcCCCC----------------HHHHHHHHHHHHhcCCCC--------ChhcHHHHHHHcCCCCHHHHHHH
Q psy15623 40 FLRRLEKRIYVPLPS----------------SSGRQELLRLILRQVDLA--------SDLDLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 40 l~rRfd~~i~i~~P~----------------~~~R~~il~~~~~~~~~~--------~~~~~~~la~~t~G~sgadi~~~ 95 (133)
.+.||..+|.++.+. ..+|...++.++++.... -.++++. -.||.|+|-.-.
T Consensus 60 ywDrfPLI~flg~~~~~g~~l~~GLNLHYlpPKaR~~fle~LlK~y~st~~~tnkt~LkI~W~~----vKg~~ga~~mik 135 (181)
T PHA02577 60 YWDRFPLIIFLGSGQSKAHTLMYGLNLHYLPPKARQLFLEELLKQYASTPTLTNKTRLKINWSN----VKGMRGADHMIK 135 (181)
T ss_pred ccccCcEEEEEecCCCCCcceEeeeecccCCHHHHHHHHHHHHHhhccCcccCCCceEEeeHHH----hhcccCHHHHHH
Confidence 455777777766554 689999999999863222 1234443 357888887544
Q ss_pred HHHHHHHhcCCCCCCHHHHHHH
Q psy15623 96 SYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 96 ~~~~~~~~~~~~~i~~~dl~~a 117 (133)
......+...-..|..+|...+
T Consensus 136 aYlp~hik~~l~eI~p~dW~~a 157 (181)
T PHA02577 136 AYLPGHIKGSLLEIAPKDWANA 157 (181)
T ss_pred HHhhhhcccceeecChHHhhhh
Confidence 4444444444445666666655
No 268
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=21.39 E-value=4.2e+02 Score=21.04 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=22.7
Q ss_pred cEEEEEeeCCCCCCCHHHHh-cccc-------EEEcCCCCHHHHH----HHHHHHHhc
Q psy15623 23 SIVILGASNFPWNIDDAFLR-RLEK-------RIYVPLPSSSGRQ----ELLRLILRQ 68 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~r-Rfd~-------~i~i~~P~~~~R~----~il~~~~~~ 68 (133)
++-+|+||+.+- ...+.. +|.. .+.+.+|...+|. .+.+.++.+
T Consensus 274 ~~rii~~t~~~~--~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~ 329 (441)
T PRK10365 274 DVRLIAATHRDL--AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQR 329 (441)
T ss_pred ceEEEEeCCCCH--HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHH
Confidence 466888887632 222222 4432 3556666655553 455555543
No 269
>KOG2804|consensus
Probab=21.26 E-value=1.7e+02 Score=23.26 Aligned_cols=57 Identities=18% Similarity=0.392 Sum_probs=33.8
Q ss_pred eCCCCCCCHHHHh--ccccEEEcCCCCHH-HHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHH
Q psy15623 30 SNFPWNIDDAFLR--RLEKRIYVPLPSSS-GRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 30 Tn~~~~lD~al~r--Rfd~~i~i~~P~~~-~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~ 93 (133)
.|-||.+-+.++. ..|.+-+=.+|-.. .--.|.+.+=..-.+-. -++|+|.|-+||.
T Consensus 134 ~~APW~lt~EFL~~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~-------T~RTeGvSTSDiI 193 (348)
T KOG2804|consen 134 PNAPWTLTPEFLEKHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLP-------TQRTEGVSTSDII 193 (348)
T ss_pred cCCCccccHHHHHhcccceeeccCccccCCCchhHHHHHHHhccccc-------ccccCCccHHHHH
Confidence 6789999999999 88888877777322 12333332221111111 2466777777775
No 270
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.22 E-value=1.5e+02 Score=19.13 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCCcEEEEEeeCCCCCCCHHHHhcc-ccEEEcC
Q psy15623 20 PTKSIVILGASNFPWNIDDAFLRRL-EKRIYVP 51 (133)
Q Consensus 20 ~~~~v~vi~aTn~~~~lD~al~rRf-d~~i~i~ 51 (133)
+...+++|||-.....++|.+.+.| .+-|.+.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve 84 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVE 84 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEE
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEE
Confidence 3458999999999888999999954 3334443
No 271
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=20.98 E-value=2.4e+02 Score=22.01 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=26.5
Q ss_pred cEEEEEeeCCC-------CCCCHHHHhccc-cEEEcCCCC--HHHHHHHHHHHH
Q psy15623 23 SIVILGASNFP-------WNIDDAFLRRLE-KRIYVPLPS--SSGRQELLRLIL 66 (133)
Q Consensus 23 ~v~vi~aTn~~-------~~lD~al~rRfd-~~i~i~~P~--~~~R~~il~~~~ 66 (133)
++-+|++|+.. ..+.+.+..||. ..|++|+-. .++...++..++
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHH
Confidence 57888888863 356677777884 455554321 234455566665
No 272
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=20.98 E-value=1.8e+02 Score=20.38 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCC
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 86 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G 86 (133)
.+|+.++|..-|+.+|..-+-..+.-+..|..+..|
T Consensus 81 Dl~sdeeR~~~LqelL~~C~~ptE~FI~ELL~kLkg 116 (144)
T PF05361_consen 81 DLESDEERRRKLQELLQDCPKPTEDFIQELLSKLKG 116 (144)
T ss_dssp CTSSTTHHHHHHHHHHTTCSSTTHHHHHHHHHHCTT
T ss_pred cCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Confidence 345555555555555544333333334444444443
No 273
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.67 E-value=2e+02 Score=27.48 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred CCcEEEEEeeCCCC--CCCHHHHhccccEEEcCCCCHHHHHHHHH
Q psy15623 21 TKSIVILGASNFPW--NIDDAFLRRLEKRIYVPLPSSSGRQELLR 63 (133)
Q Consensus 21 ~~~v~vi~aTn~~~--~lD~al~rRfd~~i~i~~P~~~~R~~il~ 63 (133)
+.+|.+|.+|.+|+ .|...+..-|..+|-|..-+..+-+.||.
T Consensus 1173 AaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrtILd 1217 (1355)
T PRK10263 1173 AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 1217 (1355)
T ss_pred hcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHHhcC
Confidence 34899999999997 56666666899999999999999888884
No 274
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=20.14 E-value=1.7e+02 Score=16.76 Aligned_cols=41 Identities=20% Similarity=0.053 Sum_probs=29.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC------CChhcHHHHHHHcCCCCHH
Q psy15623 50 VPLPSSSGRQELLRLILRQVDL------ASDLDLELVSDQLEGNAVQ 90 (133)
Q Consensus 50 i~~P~~~~R~~il~~~~~~~~~------~~~~~~~~la~~t~G~sga 90 (133)
+..-+.++|.+++-.+|+..-. ..-.+-+.|.+.++|.+-.
T Consensus 7 ~~~l~~~e~L~~l~~YLR~~~~YC~~Cg~~Y~d~~dL~~~CPG~t~~ 53 (55)
T PF13821_consen 7 FEELSPEERLDKLLSYLREEHNYCFWCGTKYDDEEDLERNCPGPTED 53 (55)
T ss_pred hhccCHHHHHHHHHHHHHhhCceeeeeCCccCCHHHHHhCCCCCCcc
Confidence 3445778999999999986311 1334677888999998754
No 275
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=20.09 E-value=70 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.009 Sum_probs=22.9
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCC
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLP 53 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P 53 (133)
+.-++.+|..|..||+.+++..+.++++-.+
T Consensus 116 g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 116 GWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp T-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 6788899999999999998888888877544
No 276
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=20.07 E-value=1.2e+02 Score=21.79 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=15.4
Q ss_pred EEEcCCCCHHHHHHHHHHHH
Q psy15623 47 RIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 47 ~i~i~~P~~~~R~~il~~~~ 66 (133)
+|.+|.|+.|.|.++.+..-
T Consensus 95 ri~iP~lT~E~R~~lvK~~k 114 (179)
T cd00520 95 RVNLPPLTEERRKELVKDAK 114 (179)
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 56667789999999887664
Done!