Query psy15623
Match_columns 133
No_of_seqs 193 out of 1161
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 17:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.2E-28 4.3E-33 195.5 14.8 116 2-123 272-391 (405)
2 4b4t_M 26S protease regulatory 100.0 1.1E-28 3.9E-33 197.4 11.7 125 2-133 305-433 (434)
3 4b4t_I 26S protease regulatory 100.0 3.9E-28 1.3E-32 193.7 12.7 126 2-133 306-436 (437)
4 4b4t_L 26S protease subunit RP 100.0 5.2E-28 1.8E-32 193.8 12.1 119 2-126 305-427 (437)
5 4b4t_K 26S protease regulatory 100.0 1.4E-27 4.8E-32 190.9 14.2 127 1-133 295-427 (428)
6 4b4t_H 26S protease regulatory 99.9 5.3E-27 1.8E-31 188.6 14.4 116 2-123 333-452 (467)
7 3cf2_A TER ATPase, transitiona 99.9 6.5E-27 2.2E-31 198.5 0.8 118 1-124 600-746 (806)
8 2x8a_A Nuclear valosin-contain 99.9 5.6E-22 1.9E-26 150.1 10.8 117 2-124 131-267 (274)
9 3cf2_A TER ATPase, transitiona 99.9 1.4E-22 4.8E-27 172.1 5.9 119 1-125 324-463 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 99.8 1E-20 3.4E-25 145.9 12.2 94 2-100 133-227 (322)
11 3cf0_A Transitional endoplasmi 99.8 2.8E-20 9.5E-25 141.9 10.5 117 2-124 139-284 (301)
12 2qp9_X Vacuolar protein sortin 99.8 7.4E-20 2.5E-24 142.7 11.1 118 2-124 171-334 (355)
13 3eie_A Vacuolar protein sortin 99.8 8.9E-20 3.1E-24 140.1 10.7 118 2-124 138-301 (322)
14 1lv7_A FTSH; alpha/beta domain 99.8 9.6E-19 3.3E-23 129.9 14.8 115 2-122 135-253 (257)
15 2ce7_A Cell division protein F 99.8 4.3E-19 1.5E-23 143.6 11.8 114 2-121 139-256 (476)
16 1ixz_A ATP-dependent metallopr 99.8 1E-18 3.4E-23 129.6 12.6 111 2-118 139-253 (254)
17 2zan_A Vacuolar protein sortin 99.8 2.9E-19 9.8E-24 143.1 8.9 94 2-100 255-349 (444)
18 1iy2_A ATP-dependent metallopr 99.8 8.2E-18 2.8E-22 126.5 14.3 111 2-118 163-277 (278)
19 2dhr_A FTSH; AAA+ protein, hex 99.8 2E-18 6.7E-23 140.4 10.4 115 2-122 154-272 (499)
20 3h4m_A Proteasome-activating n 99.8 1.8E-17 6.1E-22 124.3 13.9 117 2-124 141-261 (285)
21 3hu3_A Transitional endoplasmi 99.7 1.1E-17 3.6E-22 135.7 10.8 118 2-125 325-463 (489)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.7 2.9E-17 9.9E-22 121.3 9.6 117 2-124 130-252 (262)
23 3d8b_A Fidgetin-like protein 1 99.7 1.2E-16 4.2E-21 124.4 13.5 119 2-124 204-337 (357)
24 3b9p_A CG5977-PA, isoform A; A 99.7 6E-17 2.1E-21 122.2 9.7 120 2-124 141-275 (297)
25 2r62_A Cell division protease 99.7 5.3E-18 1.8E-22 126.3 3.5 118 2-124 135-256 (268)
26 1ypw_A Transitional endoplasmi 99.7 1.6E-19 5.4E-24 153.7 -7.8 96 2-103 601-698 (806)
27 3kw6_A 26S protease regulatory 99.7 2.9E-16 9.9E-21 97.9 7.9 74 51-124 1-76 (78)
28 3vfd_A Spastin; ATPase, microt 99.6 1.1E-15 3.9E-20 119.9 10.4 119 2-124 235-368 (389)
29 2krk_A 26S protease regulatory 99.6 7.9E-16 2.7E-20 97.9 7.0 77 49-125 7-85 (86)
30 3aji_B S6C, proteasome (prosom 99.5 1.7E-14 5.7E-19 90.8 7.7 73 54-126 2-76 (83)
31 3vlf_B 26S protease regulatory 99.5 3.7E-14 1.3E-18 90.4 7.0 71 54-124 2-74 (88)
32 1ypw_A Transitional endoplasmi 99.4 2.6E-12 8.8E-17 109.5 9.9 117 2-124 325-462 (806)
33 2dzn_B 26S protease regulatory 99.3 1.9E-13 6.6E-18 85.8 1.6 67 56-122 1-69 (82)
34 3t15_A Ribulose bisphosphate c 99.3 1.3E-12 4.5E-17 99.1 5.4 86 2-93 129-221 (293)
35 1njg_A DNA polymerase III subu 98.7 2E-07 6.8E-12 66.2 11.9 104 3-118 144-248 (250)
36 3uk6_A RUVB-like 2; hexameric 98.7 1E-07 3.5E-12 73.2 11.1 89 31-120 238-329 (368)
37 3pfi_A Holliday junction ATP-d 98.7 1.3E-07 4.5E-12 72.0 10.9 98 23-121 154-254 (338)
38 2chg_A Replication factor C sm 98.7 3.6E-07 1.2E-11 64.3 11.6 103 4-119 121-224 (226)
39 1g41_A Heat shock protein HSLU 98.6 4.6E-09 1.6E-13 84.3 0.0 55 1-63 131-189 (444)
40 1hqc_A RUVB; extended AAA-ATPa 98.6 3.9E-07 1.3E-11 68.7 10.1 98 23-121 138-238 (324)
41 2r44_A Uncharacterized protein 98.5 1.8E-06 6.2E-11 65.6 13.0 102 23-124 150-300 (331)
42 2c9o_A RUVB-like 1; hexameric 98.5 1.6E-10 5.5E-15 92.5 -10.2 80 3-97 174-261 (456)
43 3m6a_A ATP-dependent protease 98.5 1.6E-07 5.5E-12 76.8 7.3 97 22-119 223-339 (543)
44 3bos_A Putative DNA replicatio 98.5 4.3E-07 1.5E-11 65.1 8.7 94 25-119 141-241 (242)
45 1g8p_A Magnesium-chelatase 38 98.5 1.7E-06 5.7E-11 65.8 11.3 103 23-126 187-327 (350)
46 3syl_A Protein CBBX; photosynt 98.5 2.3E-07 7.8E-12 69.6 6.0 107 2-116 156-281 (309)
47 2qby_B CDC6 homolog 3, cell di 98.4 4.3E-06 1.5E-10 64.1 12.3 99 23-122 164-271 (384)
48 1d2n_A N-ethylmaleimide-sensit 98.4 9.1E-08 3.1E-12 71.0 2.4 95 22-122 166-265 (272)
49 2z4s_A Chromosomal replication 98.4 1.3E-06 4.4E-11 69.6 8.7 111 4-122 215-333 (440)
50 2v1u_A Cell division control p 98.4 6.6E-06 2.2E-10 62.8 12.3 99 23-123 167-278 (387)
51 1ofh_A ATP-dependent HSL prote 98.4 2.6E-06 8.8E-11 63.5 9.3 121 2-122 145-300 (310)
52 1in4_A RUVB, holliday junction 98.3 1.4E-05 4.9E-10 61.1 11.8 99 23-122 150-251 (334)
53 3pxg_A Negative regulator of g 98.2 3.6E-06 1.2E-10 67.5 8.0 65 23-88 291-365 (468)
54 3f9v_A Minichromosome maintena 98.2 5.4E-06 1.8E-10 68.5 8.9 102 22-124 433-590 (595)
55 2chq_A Replication factor C sm 98.2 1.5E-05 5.1E-10 59.5 10.5 91 22-117 131-222 (319)
56 1sxj_D Activator 1 41 kDa subu 98.2 1.8E-05 6.2E-10 60.0 10.9 107 3-119 151-261 (353)
57 1jr3_A DNA polymerase III subu 98.2 4.7E-05 1.6E-09 58.1 12.9 103 3-117 137-240 (373)
58 1l8q_A Chromosomal replication 98.1 7.4E-06 2.5E-10 62.1 6.6 94 23-119 132-238 (324)
59 3pxi_A Negative regulator of g 98.0 1.9E-05 6.4E-10 66.6 9.0 70 23-93 291-375 (758)
60 3pvs_A Replication-associated 98.0 2.6E-05 9E-10 62.4 9.3 95 23-119 134-242 (447)
61 1iqp_A RFCS; clamp loader, ext 98.0 4.3E-05 1.5E-09 57.1 10.0 81 3-93 128-209 (327)
62 3u61_B DNA polymerase accessor 98.0 1.3E-05 4.3E-10 60.6 6.7 79 3-90 124-211 (324)
63 2qby_A CDC6 homolog 1, cell di 98.0 0.00016 5.3E-09 55.0 12.8 111 3-122 150-273 (386)
64 1sxj_B Activator 1 37 kDa subu 98.0 6.5E-05 2.2E-09 56.0 10.1 92 23-119 137-229 (323)
65 1fnn_A CDC6P, cell division co 98.0 0.00012 4.2E-09 55.9 11.9 100 23-122 159-275 (389)
66 2c9o_A RUVB-like 1; hexameric 97.9 0.00011 3.7E-09 58.6 10.5 86 33-120 347-436 (456)
67 4fcw_A Chaperone protein CLPB; 97.8 1.9E-05 6.5E-10 59.0 4.9 73 23-95 160-270 (311)
68 1r6b_X CLPA protein; AAA+, N-t 97.8 4.7E-05 1.6E-09 64.0 7.5 98 23-121 315-433 (758)
69 3nbx_X ATPase RAVA; AAA+ ATPas 97.7 7E-05 2.4E-09 60.8 7.2 90 25-115 151-280 (500)
70 1sxj_E Activator 1 40 kDa subu 97.7 0.0002 6.8E-09 54.4 9.0 82 3-94 152-235 (354)
71 1sxj_A Activator 1 95 kDa subu 97.5 0.00067 2.3E-08 54.8 9.7 92 23-121 181-274 (516)
72 1a5t_A Delta prime, HOLB; zinc 97.4 0.00064 2.2E-08 51.9 8.6 73 3-88 126-198 (334)
73 1jbk_A CLPB protein; beta barr 97.4 4.3E-05 1.5E-09 52.2 1.8 39 23-62 151-194 (195)
74 1sxj_C Activator 1 40 kDa subu 97.3 0.0014 4.7E-08 49.9 9.3 63 23-86 140-203 (340)
75 3pxi_A Negative regulator of g 97.3 0.00038 1.3E-08 58.6 6.3 93 2-94 596-715 (758)
76 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00037 1.3E-08 58.5 5.5 93 2-94 574-706 (758)
77 1qvr_A CLPB protein; coiled co 97.1 0.0011 3.9E-08 56.6 6.9 71 23-94 299-383 (854)
78 4akg_A Glutathione S-transfera 96.9 0.00081 2.8E-08 63.7 5.2 45 23-68 1384-1433(2695)
79 3hws_A ATP-dependent CLP prote 96.7 0.011 3.8E-07 45.2 9.2 59 36-94 239-313 (363)
80 1qvr_A CLPB protein; coiled co 96.6 0.0032 1.1E-07 53.8 6.2 94 2-95 677-811 (854)
81 2p65_A Hypothetical protein PF 96.3 0.0015 5.2E-08 44.3 2.1 31 23-54 152-187 (187)
82 1w5s_A Origin recognition comp 96.3 0.043 1.5E-06 42.0 10.5 98 23-121 179-293 (412)
83 3k1j_A LON protease, ATP-depen 96.3 0.014 4.9E-07 47.9 8.1 97 23-119 252-373 (604)
84 2gno_A DNA polymerase III, gam 95.8 0.013 4.3E-07 44.4 5.0 53 3-66 100-152 (305)
85 3te6_A Regulatory protein SIR3 95.6 0.018 6.2E-07 44.1 5.4 48 22-69 162-214 (318)
86 1ojl_A Transcriptional regulat 95.4 0.019 6.4E-07 43.3 4.7 91 22-114 136-245 (304)
87 1jr3_D DNA polymerase III, del 95.3 0.16 5.3E-06 38.3 9.7 105 3-118 95-206 (343)
88 3f8t_A Predicted ATPase involv 94.9 0.62 2.1E-05 37.8 12.4 102 23-124 339-486 (506)
89 1um8_A ATP-dependent CLP prote 94.5 0.064 2.2E-06 41.1 5.7 84 35-118 255-362 (376)
90 2bjv_A PSP operon transcriptio 94.1 0.061 2.1E-06 39.0 4.6 90 23-114 141-250 (265)
91 1g41_A Heat shock protein HSLU 92.5 0.18 6.1E-06 40.3 5.2 61 3-63 280-346 (444)
92 3vkg_A Dynein heavy chain, cyt 86.0 1.4 4.8E-05 43.1 6.5 45 23-68 1422-1471(3245)
93 2r2a_A Uncharacterized protein 82.9 0.95 3.2E-05 31.9 3.2 36 23-58 123-158 (199)
94 2fna_A Conserved hypothetical 73.0 6.7 0.00023 28.6 5.4 46 43-89 199-244 (357)
95 1ny5_A Transcriptional regulat 71.9 11 0.00037 28.9 6.5 94 22-117 271-383 (387)
96 2qen_A Walker-type ATPase; unk 67.2 18 0.00061 26.2 6.6 47 43-89 193-240 (350)
97 2ys9_A Homeobox and leucine zi 66.4 17 0.0006 21.4 5.4 36 60-96 19-54 (70)
98 4akg_A Glutathione S-transfera 60.7 1E+02 0.0034 30.2 11.5 94 23-121 747-857 (2695)
99 2iut_A DNA translocase FTSK; n 58.2 26 0.0009 28.8 6.5 42 22-63 377-420 (574)
100 3n70_A Transport activator; si 53.3 7.9 0.00027 25.0 2.3 29 23-51 106-142 (145)
101 3co5_A Putative two-component 52.3 7.2 0.00025 25.2 1.9 30 23-52 106-141 (143)
102 3ado_A Lambda-crystallin; L-gu 51.1 52 0.0018 24.7 6.8 106 1-119 101-225 (319)
103 2ius_A DNA translocase FTSK; n 46.7 37 0.0013 27.4 5.6 42 23-64 332-375 (512)
104 3nau_A Zinc fingers and homeob 46.0 40 0.0014 19.5 4.3 37 57-94 14-50 (66)
105 2hg7_A Phage-like element PBSX 37.8 22 0.00075 22.3 2.3 39 46-84 34-72 (110)
106 2da7_A Zinc finger homeobox pr 36.8 32 0.0011 20.3 2.8 42 51-93 9-50 (71)
107 1svm_A Large T antigen; AAA+ f 36.1 2.2 7.6E-05 33.1 -3.0 28 24-52 255-284 (377)
108 2vhj_A Ntpase P4, P4; non- hyd 33.5 7.4 0.00025 29.8 -0.4 34 2-42 211-244 (331)
109 2cqr_A RSGI RUH-043, DNAJ homo 31.1 66 0.0023 18.7 3.7 41 54-95 22-62 (73)
110 2juc_A PRE-mRNA-splicing facto 31.1 32 0.0011 19.5 2.1 21 47-67 38-58 (59)
111 1g6u_A Domain swapped dimer; d 30.1 63 0.0022 16.8 3.1 19 81-99 11-29 (48)
112 3kev_A Galieria sulfuraria DCU 29.9 63 0.0022 22.7 4.0 66 54-121 5-72 (199)
113 2kjq_A DNAA-related protein; s 26.6 37 0.0013 22.1 2.2 27 26-52 118-147 (149)
114 3bq3_A Defective in cullin ned 25.7 97 0.0033 22.8 4.5 86 32-121 40-138 (270)
115 3lhp_S 4E10_D0_1ISEA_004_N (T9 24.9 18 0.00061 23.7 0.3 23 43-65 33-55 (123)
116 1ngr_A P75 low affinity neurot 24.8 1.1E+02 0.0039 18.0 5.5 52 74-126 21-78 (85)
117 2p0o_A Hypothetical protein DU 24.4 30 0.001 26.9 1.5 48 85-133 100-148 (372)
118 3cmw_A Protein RECA, recombina 22.2 13 0.00045 34.5 -0.9 26 1-33 1193-1218(1706)
119 2hue_C Histone H4; mini beta s 21.5 68 0.0023 19.1 2.5 31 99-130 53-83 (84)
120 1id3_B Histone H4; nucleosome 20.9 1.2E+02 0.004 18.8 3.6 31 99-130 71-101 (102)
121 1tzy_D Histone H4-VI; histone- 20.3 94 0.0032 19.2 3.1 29 101-130 74-102 (103)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=195.46 Aligned_cols=116 Identities=25% Similarity=0.345 Sum_probs=106.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||++|||+.+.. +|+||||||+|+.||||++| |||++|+|++|+.++|.+||+.++++.++..++|++.
T Consensus 272 l~~lL~~lDg~~~~~------~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~ 345 (405)
T 4b4t_J 272 MLELLNQLDGFETSK------NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRK 345 (405)
T ss_dssp HHHHHHHHHTTTCCC------CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHH
T ss_pred HHHHHHhhhccCCCC------CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHH
Confidence 689999999998876 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~ 123 (133)
||+.|+|||||||.++|..+.+ +..++..++.+||..|++.+.+
T Consensus 346 lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 346 VAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999987766655 4467778999999999886644
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-28 Score=197.45 Aligned_cols=125 Identities=22% Similarity=0.339 Sum_probs=111.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||++|||+.+.+ +|+||||||+|+.||||++| |||++|+|++|+.++|.+||+.+++++++..++|++.
T Consensus 305 ~~~lL~~ldg~~~~~------~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~ 378 (434)
T 4b4t_M 305 MLELLNQLDGFSSDD------RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQE 378 (434)
T ss_dssp HHHHHHHHTTSCSSC------SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHH
T ss_pred HHHHHHHhhccCCCC------CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence 578999999998876 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhcccccccCCC
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSRVLLFTGYY 133 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~~~~~~~~~ 133 (133)
||+.|+|||||||.++|..+.. +..++..++.+||.+|++.+++++--. .+||
T Consensus 379 lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~~-i~~Y 433 (434)
T 4b4t_M 379 LARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKS-VSFY 433 (434)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCCC-CCCC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCcC-cccc
Confidence 9999999999999987766555 446777899999999999887764322 3566
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-28 Score=193.67 Aligned_cols=126 Identities=19% Similarity=0.300 Sum_probs=110.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||++||++.+.. +|+||||||+|+.||||++| |||++|+|++|+.++|.+||+.+++++++..++|++.
T Consensus 306 l~~LL~~lDg~~~~~------~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~ 379 (437)
T 4b4t_I 306 MLELLNQLDGFDDRG------DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379 (437)
T ss_dssp HHHHHHHHHHCCCSS------SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHH
T ss_pred HHHHHHHhhCcCCCC------CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence 578999999998876 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhccc-ccccCCC
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSRV-LLFTGYY 133 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~~-~~~~~~~ 133 (133)
||+.|+|||||||.++|..+.+ +..++..++.+||..|++.+.++.. =...|+|
T Consensus 380 LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~le~lY 436 (437)
T 4b4t_I 380 LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLY 436 (437)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSSSSCC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhhHHhhc
Confidence 9999999999999987766655 4467778999999999988776532 2234555
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-28 Score=193.81 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=108.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||++|||+.+.. +|+||+|||+|+.||||++| |||++|+|++|+.++|.+||+.++++++...++|+..
T Consensus 305 l~~lL~~lDg~~~~~------~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~ 378 (437)
T 4b4t_L 305 LMELLTQMDGFDNLG------QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEA 378 (437)
T ss_dssp HHHHHHHHHSSSCTT------SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHH
T ss_pred HHHHHHHhhcccCCC------CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHH
Confidence 578999999998876 89999999999999999999 8999999999999999999999999999888999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhccc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSRV 126 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~~ 126 (133)
||+.|+|||||||.++|..+.. +..+...++.+||..|++.+.+++.
T Consensus 379 lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 379 AVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp HHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999987765554 4567778999999999998877654
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=190.90 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=111.2
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcC-CCCHHHHHHHHHHHHhcCCCCChhcH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVP-LPSSSGRQELLRLILRQVDLASDLDL 77 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~-~P~~~~R~~il~~~~~~~~~~~~~~~ 77 (133)
++++||++|||+.+.. +|+||||||+|+.||||++| |||++|+|| +|+.++|..||+.+++++++..++|+
T Consensus 295 ~l~~lL~~ldg~~~~~------~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl 368 (428)
T 4b4t_K 295 ILIELLTQMDGFDQST------NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL 368 (428)
T ss_dssp HHHHHHHHHHHSCSSC------SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH
T ss_pred HHHHHHHHhhCCCCCC------CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH
Confidence 3689999999998876 89999999999999999999 999999996 89999999999999999999899999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHh-hhhcccccccCCC
Q psy15623 78 ELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERP-FRRSRVLLFTGYY 133 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~-~~~s~~~~~~~~~ 133 (133)
+.||+.|+|||||||.++|..+.. +..++..++.+||.+|++. .+++...-.-.||
T Consensus 369 ~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 369 DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 999999999999999987766554 4567788999999999875 4555555444566
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.3e-27 Score=188.56 Aligned_cols=116 Identities=20% Similarity=0.340 Sum_probs=105.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||++||++.+.. +|+||||||+|+.||||++| |||++|+|++|+.++|.+||+.+++++++..++|++.
T Consensus 333 l~~lL~~lDg~~~~~------~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~ 406 (467)
T 4b4t_H 333 MLELITQLDGFDPRG------NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWEL 406 (467)
T ss_dssp HHHHHHHHHSSCCTT------TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred HHHHHHHhhccCCCC------cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 578999999998876 99999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~ 123 (133)
||+.|+|||||||.++|..+.. +..++..++.+||+.|++.+..
T Consensus 407 LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 407 ISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 9999999999999987766554 4467788999999999886543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.92 E-value=6.5e-27 Score=198.55 Aligned_cols=118 Identities=31% Similarity=0.448 Sum_probs=72.7
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
++|+||++|||+.+.. +|+||||||+||.||||++| |||++|+|++|+.++|.+||+.++++.++..++|++
T Consensus 600 v~~~lL~~mdg~~~~~------~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~ 673 (806)
T 3cf2_A 600 VINQILTEMDGMSTKK------NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 673 (806)
T ss_dssp HHHHHHHHHHSSCSSS------SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----
T ss_pred HHHHHHHHHhCCCCCC------CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 4799999999998876 89999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhc---------------------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKTFCG---------------------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~~~~---------------------------~~~~i~~~dl~~a~~~~~~s 124 (133)
.||+.|+||||+||.++|..+.+.+. ....++.+||++|++..++|
T Consensus 674 ~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 674 FLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 99999999999999877666544321 01358889999998888776
No 8
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=150.06 Aligned_cols=117 Identities=27% Similarity=0.387 Sum_probs=99.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhc---CCCCChhc
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQ---VDLASDLD 76 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~---~~~~~~~~ 76 (133)
+++++.+|||..... .++++++||+|+.||+|++| |||+.|++++|+.++|.+||+.++++ .+...+++
T Consensus 131 ~~~~l~~Lsgg~~~~------~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~ 204 (274)
T 2x8a_A 131 VNQLLTEMDGLEARQ------QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN 204 (274)
T ss_dssp HHHHHHHHHTCCSTT------CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCC
T ss_pred HHHHHHhhhcccccC------CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccC
Confidence 578999999998765 89999999999999999999 99999999999999999999999954 45567899
Q ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHHhc-------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 77 LELVSDQL--EGNAVQQKVMKSYTKKTFCG-------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 77 ~~~la~~t--~G~sgadi~~~~~~~~~~~~-------------~~~~i~~~dl~~a~~~~~~s 124 (133)
++.+|..| +||||+||..+|..+...+. +...++.+||.+|++.+++|
T Consensus 205 ~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 205 LEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp HHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred HHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence 99999975 59999999877665544221 23479999999999998886
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=1.4e-22 Score=172.09 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=103.8
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 78 (133)
++++||++||++.++. +|+||+|||+|+.||||++| |||++|++++|+.++|.+||+.++++.++..++|+.
T Consensus 324 iv~~LL~~mdg~~~~~------~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~ 397 (806)
T 3cf2_A 324 IVSQLLTLMDGLKQRA------HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLE 397 (806)
T ss_dssp HHHHHHTHHHHCCGGG------CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHH
T ss_pred HHHHHHHHHhcccccC------CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHH
Confidence 4789999999998876 89999999999999999999 999999999999999999999999999888999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhc-------------------CCCCCCHHHHHHHHHhhhhcc
Q psy15623 79 LVSDQLEGNAVQQKVMKSYTKKTFCG-------------------KNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 79 ~la~~t~G~sgadi~~~~~~~~~~~~-------------------~~~~i~~~dl~~a~~~~~~s~ 125 (133)
.||++|+||||+||..++..+...+. ....++.+||..|++.++++.
T Consensus 398 ~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 99999999999999877655543221 113467889999998887753
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=145.90 Aligned_cols=94 Identities=31% Similarity=0.603 Sum_probs=83.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
+++||.+||++... ..+|+||+|||+|+.+|++++|||+..+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus 133 ~~~ll~~ld~~~~~-----~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l 207 (322)
T 1xwi_A 133 KTEFLVQMQGVGVD-----NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFREL 207 (322)
T ss_dssp HHHHHHHHHCSSSC-----CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHH
T ss_pred HHHHHHHHhccccc-----CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 67899999998642 2389999999999999999999999999999999999999999999887654 68899999
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTKK 100 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~ 100 (133)
|+.|+||||+||..+|..+.
T Consensus 208 a~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 208 GRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp HHTCTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH
Confidence 99999999999987655443
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.83 E-value=2.8e-20 Score=141.88 Aligned_cols=117 Identities=31% Similarity=0.447 Sum_probs=100.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||..||++.... +|+||+|||+|+.||++++| ||+..+++++|+.++|.+||+.++++.++..++++..
T Consensus 139 ~~~lL~~l~~~~~~~------~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~ 212 (301)
T 3cf0_A 139 INQILTEMDGMSTKK------NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF 212 (301)
T ss_dssp HHHHHHHHHSSCTTS------SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred HHHHHHHhhcccCCC------CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHH
Confidence 578999999987655 89999999999999999999 9999999999999999999999999888778899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhc---------------------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFCG---------------------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~~---------------------------~~~~i~~~dl~~a~~~~~~s 124 (133)
++..|+||||+||.+++..+...+. ....++.+||..|++..++|
T Consensus 213 la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 213 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 9999999999999865544333210 01468999999999988775
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.82 E-value=7.4e-20 Score=142.69 Aligned_cols=118 Identities=26% Similarity=0.480 Sum_probs=99.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
+++||.+||++... ..+|+||+|||+|+.||++++|||+..+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus 171 ~~~ll~~l~~~~~~-----~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~l 245 (355)
T 2qp9_X 171 KTELLVQMNGVGND-----SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTL 245 (355)
T ss_dssp HHHHHHHHHHCC--------CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHH
T ss_pred HHHHHHHhhccccc-----CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 57899999998642 2389999999999999999999999999999999999999999999887654 68899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHhc---------------------------------------------CCCCCCHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFCG---------------------------------------------KNSTPSQPKLL 115 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~~---------------------------------------------~~~~i~~~dl~ 115 (133)
|+.|+||||+||..+|..+...+. ....++.+||.
T Consensus 246 a~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~ 325 (355)
T 2qp9_X 246 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 325 (355)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHH
Confidence 999999999999876554433210 12358999999
Q ss_pred HHHHhhhhc
Q psy15623 116 QAERPFRRS 124 (133)
Q Consensus 116 ~a~~~~~~s 124 (133)
.|++.+++|
T Consensus 326 ~Al~~~~ps 334 (355)
T 2qp9_X 326 KAIKSTRPT 334 (355)
T ss_dssp HHHHHSCCS
T ss_pred HHHHHcCCC
Confidence 999999887
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.81 E-value=8.9e-20 Score=140.13 Aligned_cols=118 Identities=26% Similarity=0.496 Sum_probs=99.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
+++||..|+++... ..+|+||+|||+|+.||++++|||+..+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus 138 ~~~ll~~l~~~~~~-----~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~l 212 (322)
T 3eie_A 138 KTELLVQMNGVGND-----SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTL 212 (322)
T ss_dssp HHHHHHHHGGGGTS-----CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred HHHHHHHhcccccc-----CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 57899999998642 2389999999999999999999999999999999999999999999887654 67899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh------c---------------------------------------CCCCCCHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTFC------G---------------------------------------KNSTPSQPKLL 115 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~~------~---------------------------------------~~~~i~~~dl~ 115 (133)
++.|+||||+||..++..+...+ . ....++.+||.
T Consensus 213 a~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~ 292 (322)
T 3eie_A 213 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 292 (322)
T ss_dssp HHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHH
Confidence 99999999999987654432211 0 11459999999
Q ss_pred HHHHhhhhc
Q psy15623 116 QAERPFRRS 124 (133)
Q Consensus 116 ~a~~~~~~s 124 (133)
+|++..+++
T Consensus 293 ~al~~~~ps 301 (322)
T 3eie_A 293 KAIKSTRPT 301 (322)
T ss_dssp HHHHHSCCS
T ss_pred HHHHhcCCC
Confidence 999988886
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.81 E-value=9.6e-19 Score=129.86 Aligned_cols=115 Identities=26% Similarity=0.457 Sum_probs=101.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
++++|..||++.... +++||++||+|+.+|++++| ||++.+++++|+.++|.+||+.++++.++..+.++..
T Consensus 135 ~~~ll~~l~~~~~~~------~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~ 208 (257)
T 1lv7_A 135 LNQMLVEMDGFEGNE------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI 208 (257)
T ss_dssp HHHHHHHHHTCCSSS------CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHhhCcccCC------CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHH
Confidence 467899999987655 89999999999999999999 9999999999999999999999999888888889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~ 122 (133)
++..++||+++||..++..+...+ .+...++.+|+.++++...
T Consensus 209 la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 209 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 999999999999997665554433 5567899999999987654
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.80 E-value=4.3e-19 Score=143.57 Aligned_cols=114 Identities=26% Similarity=0.379 Sum_probs=101.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||.+||++.+.. +|+||++||+|+.+|++++| |||+.+++++|+.++|.+||+.++++.++..++++..
T Consensus 139 l~~LL~~ld~~~~~~------~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~ 212 (476)
T 2ce7_A 139 LNQLLVEMDGFDSKE------GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEI 212 (476)
T ss_dssp HHHHHHHHHHSCGGG------TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHHhccCCCC------CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHH
Confidence 578999999987655 89999999999999999999 9999999999999999999999999988888899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~ 121 (133)
+++.|+||+|+||.+++..+...+ .+...++.+||..++...
T Consensus 213 la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 213 IAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 999999999999997666554433 456789999999998755
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.79 E-value=1e-18 Score=129.56 Aligned_cols=111 Identities=29% Similarity=0.414 Sum_probs=97.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++++.+|++..... .++++++||.|+.||++++| ||++.+++++|+.++|.+||+.+.++.++..++++..
T Consensus 139 ~~~ll~~l~g~~~~~------~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 212 (254)
T 1ixz_A 139 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 212 (254)
T ss_dssp HHHHHHHHHTCCTTC------CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHHhCCCCCC------CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHH
Confidence 468899999887654 79999999999999999999 9999999999999999999999998888888889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE 118 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~ 118 (133)
+|+.|+||+|+||..++..+...+ .+...++.+|+.+++
T Consensus 213 la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 213 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999987665554433 455679999998874
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.78 E-value=2.9e-19 Score=143.13 Aligned_cols=94 Identities=32% Similarity=0.617 Sum_probs=82.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
+++||.+||++... ..+|+||+|||+|+.||++++|||+..+++++|+.++|..||+.++++.+.. .+.++..|
T Consensus 255 ~~~lL~~l~~~~~~-----~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l 329 (444)
T 2zan_A 255 KTEFLVQMQGVGVD-----NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQEL 329 (444)
T ss_dssp HHHHHTTTTCSSCC-----CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHH
T ss_pred HHHHHHHHhCcccC-----CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 57899999998642 2389999999999999999999999999999999999999999999877653 67899999
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTKK 100 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~ 100 (133)
|+.|+||||+||..++..+.
T Consensus 330 a~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 330 GRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp HHHTTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH
Confidence 99999999999986554443
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.77 E-value=8.2e-18 Score=126.48 Aligned_cols=111 Identities=29% Similarity=0.414 Sum_probs=96.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++++.+|++..... .++++++||.|+.||++++| ||++.+++++|+.++|.+||+.++++.++..++++..
T Consensus 163 ~~~ll~~lsgg~~~~------~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 236 (278)
T 1iy2_A 163 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 236 (278)
T ss_dssp HHHHHHHHTTCCTTC------CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHHhCCCCCC------CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHH
Confidence 467888999887654 79999999999999999999 9999999999999999999999998888888889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE 118 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~ 118 (133)
+|..++|++|+||..++..+...+ .+...++.+|+.+++
T Consensus 237 la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 237 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999987655554433 455679999998875
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.76 E-value=2e-18 Score=140.37 Aligned_cols=115 Identities=28% Similarity=0.392 Sum_probs=102.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||.+||+..... .++++++||+|+.||++++| |||+.|+|++|+.++|.+||+.++++.++..++++..
T Consensus 154 l~~LL~~Ldg~~~~~------~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~ 227 (499)
T 2dhr_A 154 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 227 (499)
T ss_dssp HHHHHHHGGGCCSSC------CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHH
T ss_pred HHHHHHHhcccccCc------cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 578999999987655 89999999999999999999 9999999999999999999999998888888899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~ 122 (133)
+|..|+||+|+||.+++..+...+ .+...++.+||.++++...
T Consensus 228 lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 228 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp HHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 999999999999998766665544 3456799999999988653
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=1.8e-17 Score=124.27 Aligned_cols=117 Identities=27% Similarity=0.389 Sum_probs=101.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+.+++..++++.... ++++|+|||.++.+|++++| ||+..++++.|+.++|.+||+.++++.....+.++..
T Consensus 141 l~~ll~~~~~~~~~~------~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 214 (285)
T 3h4m_A 141 LMQLLAEMDGFDARG------DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEE 214 (285)
T ss_dssp HHHHHHHHHTTCSSS------SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred HHHHHHHhhCCCCCC------CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHH
Confidence 356778888887655 89999999999999999999 9999999999999999999999999888888889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
++..+.|++|+||..++..+.. ...+...++.+|+.++++.+.+.
T Consensus 215 l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 9999999999999876555544 34566789999999999877554
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.74 E-value=1.1e-17 Score=135.74 Aligned_cols=118 Identities=25% Similarity=0.382 Sum_probs=103.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||..||+..... +|+||+|||+|+.||+++.| ||+..+++++|+.++|.+||+.++++.++..+.++..
T Consensus 325 ~~~LL~~ld~~~~~~------~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~ 398 (489)
T 3hu3_A 325 VSQLLTLMDGLKQRA------HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398 (489)
T ss_dssp HHHHHHHHHHSCTTS------CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHH
T ss_pred HHHHHHHhhccccCC------ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHH
Confidence 578999999887665 89999999999999999999 9999999999999999999999999988888889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--cCC-----------------CCCCHHHHHHHHHhhhhcc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--GKN-----------------STPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~~~-----------------~~i~~~dl~~a~~~~~~s~ 125 (133)
++..|.||+|+||..++..+...+ ... ..++.+||..|++.++++.
T Consensus 399 la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 999999999999998766555433 211 1489999999999888864
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=121.34 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=95.0
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChh--cH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDL--DL 77 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~--~~ 77 (133)
+++||.++++..... ++++|+|||.++.+|++++| ||+..+++++|+.++|.+||+.++++.+..... .+
T Consensus 130 l~~ll~~~~~~~~~~------~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 203 (262)
T 2qz4_A 130 LNQLLVEMDGMGTTD------HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYS 203 (262)
T ss_dssp HHHHHHHHHTCCTTC------CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHH
T ss_pred HHHHHHHhhCcCCCC------CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHH
Confidence 467888999887654 89999999999999999999 999999999999999999999999887766433 35
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhc
Q psy15623 78 ELVSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 78 ~~la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s 124 (133)
..+++.+.||+|+||..++..+...+ .+...++.+|+..+++...++
T Consensus 204 ~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 204 QRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence 88999999999999987766655544 445689999999998866543
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=124.38 Aligned_cols=119 Identities=26% Similarity=0.391 Sum_probs=96.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
+++||..|++..... ..+++||+|||.++.+|++++|||+..+++++|+.++|.+|++.++++.+.. .+.++..|
T Consensus 204 ~~~lL~~l~~~~~~~----~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~l 279 (357)
T 3d8b_A 204 KTEFLVQLDGATTSS----EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQI 279 (357)
T ss_dssp HHHHHHHHHC----C----CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHH
T ss_pred HHHHHHHHhcccccC----CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHH
Confidence 468999999876421 3489999999999999999999999999999999999999999999775543 56789999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH--h------------cCCCCCCHHHHHHHHHhhhhc
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTF--C------------GKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~--~------------~~~~~i~~~dl~~a~~~~~~s 124 (133)
++.|+||+|+||..++..+... . .....++.+||..|++.++++
T Consensus 280 a~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 280 VQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGG
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence 9999999999998765544321 1 233579999999999998886
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=6e-17 Score=122.16 Aligned_cols=120 Identities=26% Similarity=0.376 Sum_probs=95.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
.++||..+|+..... ...+++||++||+|+.+|++++|||+..+++++|+.++|..||+.++++.+.. .+.++..+
T Consensus 141 ~~~ll~~l~~~~~~~---~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~l 217 (297)
T 3b9p_A 141 KTEFLVEFDGLPGNP---DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRL 217 (297)
T ss_dssp HHHHHHHHHHCC---------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHH
T ss_pred HHHHHHHHhcccccC---CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 467899999886531 12379999999999999999999999999999999999999999999876543 56778999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH--hc------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTF--CG------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~--~~------------~~~~i~~~dl~~a~~~~~~s 124 (133)
++.|.||+|+||..++..+... .. ....++.+||..|++..+++
T Consensus 218 a~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 218 AKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 9999999999998765543322 11 23579999999998877664
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.70 E-value=5.3e-18 Score=126.27 Aligned_cols=118 Identities=27% Similarity=0.400 Sum_probs=100.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||..|++..+. ..+|+||+|||.++.+|++++| ||+..+++++|+.++|.+||+.++++.+...+.++..
T Consensus 135 ~~~ll~~l~~~~~~-----~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 209 (268)
T 2r62_A 135 LNQLLAEMDGFGSE-----NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQE 209 (268)
T ss_dssp TTTTTTTTTCSSCS-----CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTT
T ss_pred HHHHHHHhhCcccC-----CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHH
Confidence 35677777776543 2369999999999999999999 9999999999999999999999999888777888999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFCG--KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~~--~~~~i~~~dl~~a~~~~~~s 124 (133)
+++.+.||+|+||..++..+...+. +...++.+|+.++++...++
T Consensus 210 la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 210 VAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp TTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhc
Confidence 9999999999999988777766553 35689999999988766554
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.68 E-value=1.6e-19 Score=153.72 Aligned_cols=96 Identities=32% Similarity=0.534 Sum_probs=80.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++||++||++.... +|+||+|||+|+.||+|++| ||+..|++++|+.++|.+||+.++++.++..+++++.
T Consensus 601 ~~~LL~~ld~~~~~~------~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~ 674 (806)
T 1ypw_A 601 INQILTEMDGMSTKK------NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF 674 (806)
T ss_dssp HHHHHTTCC------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSC
T ss_pred HHHHHHHHhcccccC------CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHH
Confidence 689999999997765 89999999999999999999 9999999999999999999999999988888899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC 103 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~ 103 (133)
|++.|+||||+||..++..+...+
T Consensus 675 la~~t~g~sgadi~~l~~~a~~~a 698 (806)
T 1ypw_A 675 LAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp SCGGGSSSCCHHHHHHHHHHHHHH
T ss_pred HHHhccccCHHHHHHHHHHHHHHH
Confidence 999999999999998766665544
No 27
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=97.89 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
|+|+.++|.+||+.++++.++..++|+..||+.|+||||+||..+|..+.. +..+...++.+||..|++.+.++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999988889999999999999999999987665554 44667789999999999887664
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=119.89 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=95.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV 80 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 80 (133)
.++||..|+++.... ..+|+||+|||+++.||++++|||+..+++++|+.++|.+||+.++...... .+.++..|
T Consensus 235 ~~~ll~~l~~~~~~~----~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~l 310 (389)
T 3vfd_A 235 KTEFLIEFDGVQSAG----DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQL 310 (389)
T ss_dssp HHHHHHHHHHHC---------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred HHHHHHHhhcccccC----CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 467889999876532 3489999999999999999999999999999999999999999999775443 56688999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH--hc------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 81 SDQLEGNAVQQKVMKSYTKKTF--CG------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~~~~--~~------------~~~~i~~~dl~~a~~~~~~s 124 (133)
++.+.||++++|..++..+... .. ....++.+||..+++..+++
T Consensus 311 a~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 311 ARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 9999999999998765544322 11 33578999999998876654
No 29
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=97.91 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=66.9
Q ss_pred EcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhhhhcc
Q psy15623 49 YVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPFRRSR 125 (133)
Q Consensus 49 ~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~~~s~ 125 (133)
+-.+||.++|.+||+.++++.++..++|++.||+.|+|||||||.++|..+... ......|+.+||..|++.+++.+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 346899999999999999999888899999999999999999999877666554 45567899999999999887653
No 30
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.55 E-value=1.7e-14 Score=90.80 Aligned_cols=73 Identities=8% Similarity=0.049 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhccc
Q psy15623 54 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRSRV 126 (133)
Q Consensus 54 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s~~ 126 (133)
|.++|.+||+.++++.++..++|++.||+.|+|||||||..+|..+...+ .....++.+||..|++.++++.-
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 67999999999999999888999999999999999999998887777755 44568999999999999988754
No 31
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.51 E-value=3.7e-14 Score=90.40 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 54 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 54 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
|.++|.+||+.++++.++..++|++.||+.|+|||||||.++|..+.. +......++.+||..|++.+.++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 568999999999999999899999999999999999999987666555 44566789999999999876543
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.36 E-value=2.6e-12 Score=109.48 Aligned_cols=117 Identities=25% Similarity=0.389 Sum_probs=96.9
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL 79 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 79 (133)
+++|+..|++..... .+++|+|||+|+.+|+++.| ||++.++++.|+.++|.+||+.+.++..+..+.++..
T Consensus 325 ~~~Ll~ll~g~~~~~------~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~ 398 (806)
T 1ypw_A 325 VSQLLTLMDGLKQRA------HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398 (806)
T ss_dssp HHHHHHHHHSSCTTS------CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHH
T ss_pred HHHHHHHhhhhcccc------cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHH
Confidence 467899999998765 89999999999999999999 9999999999999999999999999988888889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh--c-----------------CCCCCCHHHHHHHHHhhhhc
Q psy15623 80 VSDQLEGNAVQQKVMKSYTKKTFC--G-----------------KNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 80 la~~t~G~sgadi~~~~~~~~~~~--~-----------------~~~~i~~~dl~~a~~~~~~s 124 (133)
++..+.||+++|+..++..+...+ . ....++.+|+..++....++
T Consensus 399 la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCch
Confidence 999999999999986544433321 1 12346677787777655443
No 33
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.34 E-value=1.9e-13 Score=85.84 Aligned_cols=67 Identities=13% Similarity=0.003 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhh
Q psy15623 56 SGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 56 ~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~ 122 (133)
++|.+||+.++++.++..++|++.||+.|+|||||||.++|..+.. +..+...++.+||..|++.+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 5799999999999988889999999999999999999987666655 445667899999999998774
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.32 E-value=1.3e-12 Score=99.14 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHHHHHhhCCCCCC-----CCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCCh
Q psy15623 2 KSELLCHMDGIASTT-----NADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASD 74 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~-----~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~ 74 (133)
.+.|++.||+..... ......+|+||+|||+++.||++++| |||..++ +|+.++|.+|++.++... +
T Consensus 129 ~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~----~ 202 (293)
T 3t15_A 129 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD----N 202 (293)
T ss_dssp HHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG----C
T ss_pred HHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC----C
Confidence 478899998654110 01134589999999999999999999 9999997 579999999999888653 4
Q ss_pred hcHHHHHHHcCCCCHHHHH
Q psy15623 75 LDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 75 ~~~~~la~~t~G~sgadi~ 93 (133)
++.+.+++.++||+|+||.
T Consensus 203 ~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 203 VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CCHHHHHHHHHHSCSCCHH
T ss_pred CCHHHHHHHhCCCCcccHH
Confidence 6788999999999999985
No 35
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.74 E-value=2e-07 Score=66.21 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=79.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.|+..++... .++.+|++||.++.+++++.+|+ ..+++++|+.++..++++.++.+.+.. ++..+..++
T Consensus 144 ~~l~~~l~~~~--------~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 144 NALLKTLEEPP--------EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHSCC--------TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHhcCC--------CceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 45666666542 27899999999999999999996 689999999999999999998765433 455688999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
+.+.| .++.+...+..+.. .....++.+++.+++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~--~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIA--SGDGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHT--TTTSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHh--ccCceecHHHHHHHh
Confidence 99988 78888765544432 233479999988764
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.74 E-value=1e-07 Score=73.19 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH--hcCCC
Q psy15623 31 NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF--CGKNS 107 (133)
Q Consensus 31 n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~--~~~~~ 107 (133)
|.++.+|+++++||.. +++++|+.+++.+|++..+...+.. ++..+..+++.+.|.+++++..++..+... ..+..
T Consensus 238 ~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~ 316 (368)
T 3uk6_A 238 QSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGT 316 (368)
T ss_dssp EEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3588999999999987 8999999999999999998764433 455688899999877899998765554443 35667
Q ss_pred CCCHHHHHHHHHh
Q psy15623 108 TPSQPKLLQAERP 120 (133)
Q Consensus 108 ~i~~~dl~~a~~~ 120 (133)
.++.+++.+++..
T Consensus 317 ~It~~~v~~a~~~ 329 (368)
T 3uk6_A 317 EVQVDDIKRVYSL 329 (368)
T ss_dssp SBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.71 E-value=1.3e-07 Score=71.96 Aligned_cols=98 Identities=6% Similarity=0.048 Sum_probs=75.7
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH-
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK- 100 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~- 100 (133)
++++|++||.+..+++++++||+..+++++|+.+++..+++.++...+.. ++..+..+++.+.| +++++...+..+.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD 232 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999876544 45557888887766 4566655443332
Q ss_pred -HHhcCCCCCCHHHHHHHHHhh
Q psy15623 101 -TFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 101 -~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+...+...++.+++..++...
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHHHHh
Confidence 223445668888888776543
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.68 E-value=3.6e-07 Score=64.28 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=75.6
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHH
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSD 82 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 82 (133)
.|+..++.... ++.+|++||.++.+++++.+||. .+++++|+.++..++++..+.+.+.. ++..+..+++
T Consensus 121 ~l~~~l~~~~~--------~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 191 (226)
T 2chg_A 121 ALRRTMEMYSK--------SCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIY 191 (226)
T ss_dssp HHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHhcCC--------CCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45555655322 67889999999999999999998 89999999999999999988654333 3556788888
Q ss_pred HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
.+.| ....+......+...+ ..++.+++.+++.
T Consensus 192 ~~~g-~~r~l~~~l~~~~~~~---~~I~~~~v~~~~~ 224 (226)
T 2chg_A 192 ISGG-DFRKAINALQGAAAIG---EVVDADTIYQITA 224 (226)
T ss_dssp HHTT-CHHHHHHHHHHHHHTC---SCBCHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHhcC---ceecHHHHHHHhc
Confidence 8876 4555544333332222 6799999988764
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.61 E-value=4.6e-09 Score=84.26 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEe-eCCCCCCCHHHHh--ccccEEEcCCCCHH-HHHHHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGA-SNFPWNIDDAFLR--RLEKRIYVPLPSSS-GRQELLR 63 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~a-Tn~~~~lD~al~r--Rfd~~i~i~~P~~~-~R~~il~ 63 (133)
++++||++|||+.+.. .| +++ ||+|+.||+|++| |||++|+|++|+.. .|.+|+.
T Consensus 131 vl~~LL~~~dg~~~~~------~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 131 ILDALLPPAKNQWGEV------EN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHhhcccccc------cc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 5789999999997754 43 455 9999999999999 99999999999988 7888864
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.58 E-value=3.9e-07 Score=68.70 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=76.1
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
++.+|++||.++.+++++.+||+..+++++|+.+++..+++.++...+.. ++..+..|+..+.|. ++++...+..+..
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRD 216 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999998765443 455678899998774 5677655444433
Q ss_pred Hh--cCCCCCCHHHHHHHHHhh
Q psy15623 102 FC--GKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 102 ~~--~~~~~i~~~dl~~a~~~~ 121 (133)
.+ .+...++.+++..++..+
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 33 244568888887776543
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.54 E-value=1.8e-06 Score=65.58 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=71.7
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-----------------------Ch
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-----------------------SD 74 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----------------------~~ 74 (133)
++++|+|+|..+ .+++++++||+.+++++.|+.++|.+|++......+.. ++
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 229 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISE 229 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCH
T ss_pred CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCH
Confidence 678888888443 39999999999999999999999999999987543211 12
Q ss_pred hcHHHHHHHc-------------------CCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 75 LDLELVSDQL-------------------EGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 75 ~~~~~la~~t-------------------~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
.-++.+++.. .|.|++.+..+...+.+ ...++..++.+|+.+++..+-+.
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 2244444322 26688888765444433 33566779999999998755433
No 42
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.54 E-value=1.6e-10 Score=92.48 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred HHHHHHhh--CCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--cccc--EEEcCCCC--HHHHHHHHHHHHhcCCCCCh
Q psy15623 3 SELLCHMD--GIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEK--RIYVPLPS--SSGRQELLRLILRQVDLASD 74 (133)
Q Consensus 3 ~~lL~~lD--~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~--~i~i~~P~--~~~R~~il~~~~~~~~~~~~ 74 (133)
++++.+|+ ++... +.|+|++|||+++.+|+|+.| |||+ .+++|+|+ .++|.+|++.+..
T Consensus 174 ~~ll~~l~~~~~~~~------~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------- 240 (456)
T 2c9o_A 174 PSIFESLQKERVEAG------DVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------- 240 (456)
T ss_dssp HHHHHHHHHTTCCTT------EEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------
T ss_pred HHHHHHHhhccCCCC------CEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------
Confidence 45666665 33333 267777999999999999998 9999 77788884 4788888876553
Q ss_pred hcHHHHHHHcCCCCHHHHHHHHH
Q psy15623 75 LDLELVSDQLEGNAVQQKVMKSY 97 (133)
Q Consensus 75 ~~~~~la~~t~G~sgadi~~~~~ 97 (133)
.|++.++..|+| |+||.+++.
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~ 261 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMG 261 (456)
T ss_dssp HHHHHTC----------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHh
Confidence 379999999999 999987663
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.53 E-value=1.6e-07 Score=76.80 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=66.7
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh-----cCCCC------ChhcHHHHHHHcCC-CCH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-----QVDLA------SDLDLELVSDQLEG-NAV 89 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~-----~~~~~------~~~~~~~la~~t~G-~sg 89 (133)
.++++|+|||.++.+||++++||+ .|+++.|+.++|.+|++.++. ...+. ++..+..+++...+ ...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 478999999999999999999996 799999999999999998872 22221 23345666665544 344
Q ss_pred HHHH----HHHHHHHHH--hc--CCCCCCHHHHHHHHH
Q psy15623 90 QQKV----MKSYTKKTF--CG--KNSTPSQPKLLQAER 119 (133)
Q Consensus 90 adi~----~~~~~~~~~--~~--~~~~i~~~dl~~a~~ 119 (133)
++|. ..+..+... .. ....++.+++.+++.
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhC
Confidence 5553 333332222 22 334688888888765
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.53 E-value=4.3e-07 Score=65.05 Aligned_cols=94 Identities=10% Similarity=0.011 Sum_probs=67.6
Q ss_pred EEEEeeCCCC---CCCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHH
Q psy15623 25 VILGASNFPW---NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYT 98 (133)
Q Consensus 25 ~vi~aTn~~~---~lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~ 98 (133)
+|+++++.+. .+++++.+||. ..+++++|+.+++.++++.++...+.. ++..++.+++.+.| +.+++...+..
T Consensus 141 ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 219 (242)
T 3bos_A 141 LIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDR 219 (242)
T ss_dssp EEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5555544454 56799999987 999999999999999999999755433 34557889998876 77787654333
Q ss_pred HHHHh-cCCCCCCHHHHHHHHH
Q psy15623 99 KKTFC-GKNSTPSQPKLLQAER 119 (133)
Q Consensus 99 ~~~~~-~~~~~i~~~dl~~a~~ 119 (133)
+...+ .+...++.+++.++++
T Consensus 220 ~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 220 LDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHhCCCCcHHHHHHHhh
Confidence 33332 2345699999988763
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.48 E-value=1.7e-06 Score=65.79 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=73.0
Q ss_pred cEEEEEeeCCCC-CCCHHHHhccccEEEcCCC-CHHHHHHHHHHHHh-------------------------------cC
Q psy15623 23 SIVILGASNFPW-NIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILR-------------------------------QV 69 (133)
Q Consensus 23 ~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~~-------------------------------~~ 69 (133)
++++|+|||... .+++++++||+.+++++.| +.+.|.+|++..+. +.
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 266 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKV 266 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred ceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCC
Confidence 789999999744 8999999999999999998 78888888876321 12
Q ss_pred CCCChhcHHHHHHHcCC---CCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhccc
Q psy15623 70 DLASDLDLELVSDQLEG---NAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRSRV 126 (133)
Q Consensus 70 ~~~~~~~~~~la~~t~G---~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s~~ 126 (133)
.++ +.-+..|++.+.| -+.+.+..++..+...+ .++..++.+|+.+++...-+.++
T Consensus 267 ~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 267 EAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp BCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 223 3335556555533 26788876655444433 56667999999999886655554
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.47 E-value=2.3e-07 Score=69.64 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=71.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-Chh
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDL 75 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~ 75 (133)
.+.|+..|+.... ++++|++||.++ .++|++.+||+.+++|+.|+.+++.+|++.++.+.+.. ++.
T Consensus 156 ~~~Ll~~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~ 227 (309)
T 3syl_A 156 IEILLQVMENNRD--------DLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227 (309)
T ss_dssp HHHHHHHHHHCTT--------TCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH
T ss_pred HHHHHHHHhcCCC--------CEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3577778876432 679999998754 35799999999999999999999999999999876544 344
Q ss_pred cHHHHHHHc------CC-CCHHHHHHHHHHHH------HHhcCCCCCCHHHHHH
Q psy15623 76 DLELVSDQL------EG-NAVQQKVMKSYTKK------TFCGKNSTPSQPKLLQ 116 (133)
Q Consensus 76 ~~~~la~~t------~G-~sgadi~~~~~~~~------~~~~~~~~i~~~dl~~ 116 (133)
.+..+++.. .. -+++++...+..+. ........++.+++..
T Consensus 228 ~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~ 281 (309)
T 3syl_A 228 AETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALST 281 (309)
T ss_dssp HHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHE
T ss_pred HHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhh
Confidence 456666652 22 24778765333222 1222345566666653
No 47
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.42 E-value=4.3e-06 Score=64.15 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=75.0
Q ss_pred cEEEEEeeCCC---CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCCChhcHHHHHHHcCCCC--HHHHH
Q psy15623 23 SIVILGASNFP---WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLASDLDLELVSDQLEGNA--VQQKV 93 (133)
Q Consensus 23 ~v~vi~aTn~~---~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~~~~~~~~la~~t~G~s--gadi~ 93 (133)
++.+|++||.+ +.+++++.+||...+++++|+.++..+|++..+.. ..+ ++..++.+++.+.+.+ ...+.
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~G~~r~a~ 242 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKEHGDARKAV 242 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTTCCCHHHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhccCCHHHHH
Confidence 78999999987 78999999999889999999999999999998863 223 3445778888886333 23333
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhhh
Q psy15623 94 MKSYTKKTFCGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~dl~~a~~~~~ 122 (133)
..+..+...+.+...++.+++..++....
T Consensus 243 ~~l~~a~~~a~~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 243 NLLFRAAQLASGGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 44444544555667899999999877654
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.40 E-value=9.1e-08 Score=71.02 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CcEEEEEeeCCCCCCCH-HHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCC----CHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDD-AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGN----AVQQKVMKS 96 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~-al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~----sgadi~~~~ 96 (133)
.++++|+|||.++.+|+ .+.+||+..+++|.++. |.+|.+.+.....+ ++.++..+++.+.|+ +.+++.+..
T Consensus 166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred CCEEEEEecCChhhcchhhhhcccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 47899999999999999 56669999988865543 45555554444333 466799999999998 555654443
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhh
Q psy15623 97 YTKKTFCGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 97 ~~~~~~~~~~~~i~~~dl~~a~~~~~ 122 (133)
..+ .........+++.+++.+..
T Consensus 243 ~~a---~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 243 EMS---LQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHH---TTSCGGGHHHHHHHHHHHTS
T ss_pred HHH---hhhchHHHHHHHHHHHHHcC
Confidence 332 22333456667776665544
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=1.3e-06 Score=69.64 Aligned_cols=111 Identities=12% Similarity=0.214 Sum_probs=77.7
Q ss_pred HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhc--CCCCChhc
Q psy15623 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQ--VDLASDLD 76 (133)
Q Consensus 4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~ 76 (133)
+|+..++.+...+ ..+||++.+.|.. +++++++||. ..+++++|+.++|..|++..+.. ..++.+ .
T Consensus 215 ~l~~~l~~l~~~~------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~ 287 (440)
T 2z4s_A 215 ELFHTFNELHDSG------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-V 287 (440)
T ss_dssp HHHHHHHHHHTTT------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-H
T ss_pred HHHHHHHHHHHCC------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-H
Confidence 4555555544332 5566665555655 8999999997 88999999999999999999864 334433 4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhh
Q psy15623 77 LELVSDQLEGNAVQQKVMKSYTKKTFC-GKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 77 ~~~la~~t~G~sgadi~~~~~~~~~~~-~~~~~i~~~dl~~a~~~~~ 122 (133)
+..|+..+.| +++++...+..+...+ .....++.+++.++++...
T Consensus 288 l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 288 LNFVAENVDD-NLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 7889999876 7888875443333332 2334699999999877554
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.38 E-value=6.6e-06 Score=62.81 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=72.6
Q ss_pred cEEEEEeeCCC---CCCCHHHHhcccc-EEEcCCCCHHHHHHHHHHHHhc----CCCCChhcHHHHHHHcC---CCCHHH
Q psy15623 23 SIVILGASNFP---WNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQ----VDLASDLDLELVSDQLE---GNAVQQ 91 (133)
Q Consensus 23 ~v~vi~aTn~~---~~lD~al~rRfd~-~i~i~~P~~~~R~~il~~~~~~----~~~~~~~~~~~la~~t~---G~sgad 91 (133)
++.+|++||.+ +.+++++.+||.. .+++++|+.+++.+|++..+.. ..+ ++..++.+++.+. |. +..
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G~-~r~ 244 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREHGD-ARR 244 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSSCC-HHH
T ss_pred eEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhccC-HHH
Confidence 78999999998 7899999999986 9999999999999999998864 222 3344777888886 63 444
Q ss_pred HHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623 92 KVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR 123 (133)
Q Consensus 92 i~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~ 123 (133)
+...+..+...+ .+...++.+++..++.....
T Consensus 245 ~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 245 ALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 444333333332 35678999999998775543
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.35 E-value=2.6e-06 Score=63.50 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=77.8
Q ss_pred HHHHHHHhhCCCCCC--CCCCCCcEEEEEe----eCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH----HH-----
Q psy15623 2 KSELLCHMDGIASTT--NADPTKSIVILGA----SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL----IL----- 66 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~--~~~~~~~v~vi~a----Tn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~----- 66 (133)
.+.|+..|++..-.. +..+..++++|++ ++.+..+++++.+||+..++|++|+.+++.+|++. ++
T Consensus 145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 224 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA 224 (310)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH
Confidence 356777788642100 0001236788888 56789999999999999999999999999999983 22
Q ss_pred --hcCCC---CChhcHHHHHHHc-------CCCCHHHHHHHHHHHH-----HHhcCCC---CCCHHHHHHHHHhhh
Q psy15623 67 --RQVDL---ASDLDLELVSDQL-------EGNAVQQKVMKSYTKK-----TFCGKNS---TPSQPKLLQAERPFR 122 (133)
Q Consensus 67 --~~~~~---~~~~~~~~la~~t-------~G~sgadi~~~~~~~~-----~~~~~~~---~i~~~dl~~a~~~~~ 122 (133)
..... -++..++.|++.+ ++..++++...+..+. ....... .++.+++.+++....
T Consensus 225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 11221 1344577788777 2567888865433221 1221111 489999998876543
No 52
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.26 E-value=1.4e-05 Score=61.12 Aligned_cols=99 Identities=10% Similarity=0.145 Sum_probs=75.8
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
.+.++++||.++.|++.+++||...+.+++|+.+++.+|++...+..... ++..+..||+++.|. ++++..++..+..
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~ 228 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRD 228 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999988665443 345578899999884 5666544333322
Q ss_pred --HhcCCCCCCHHHHHHHHHhhh
Q psy15623 102 --FCGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 102 --~~~~~~~i~~~dl~~a~~~~~ 122 (133)
...+...++.+++.+++....
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC
Confidence 224456799998888877543
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.22 E-value=3.6e-06 Score=67.55 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=52.8
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCCCC
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGNA 88 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G~s 88 (133)
.+.+|++||.+. .+|+++.|||. .|.|+.|+.+++..||+.++.. .... .+..+..++..+.+|.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 789999999987 79999999998 5999999999999999988865 2222 4455777777776554
No 54
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.21 E-value=5.4e-06 Score=68.54 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=72.0
Q ss_pred CcEEEEEeeCCCC-------------CCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhcCCC----------------
Q psy15623 22 KSIVILGASNFPW-------------NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQVDL---------------- 71 (133)
Q Consensus 22 ~~v~vi~aTn~~~-------------~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~~~~---------------- 71 (133)
.++.||||||.++ .+++++++||| ..+..+.|+.+ ...|.+..+.....
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 3788999999987 99999999998 45666788888 88888887754220
Q ss_pred ----------CChhcHHHHHHH--------------cCCCCHHHHHHHHHHH--HHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 72 ----------ASDLDLELVSDQ--------------LEGNAVQQKVMKSYTK--KTFCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 72 ----------~~~~~~~~la~~--------------t~G~sgadi~~~~~~~--~~~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
-++...+.|++. +.+.|++.+..+...+ .+....+..++.+|+.+|++-++.|
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 011122334433 3478888887654443 3444677889999999998876654
No 55
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.20 E-value=1.5e-05 Score=59.45 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=65.4
Q ss_pred CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK 100 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~ 100 (133)
.++.+|++||.++.+++++.+|+. .+++++|+.+++..++...+++.+.. ++..+..+++.++| +.+.+........
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 378899999999999999999997 89999999999999999998765543 45567888877766 3333333222211
Q ss_pred HHhcCCCCCCHHHHHHH
Q psy15623 101 TFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 101 ~~~~~~~~i~~~dl~~a 117 (133)
. ....++.+++.+.
T Consensus 209 ~---~~~~i~~~~v~~~ 222 (319)
T 2chq_A 209 A---IGEVVDADTIYQI 222 (319)
T ss_dssp H---SSSCBCHHHHHHH
T ss_pred H---cCCCCCHHHHHHH
Confidence 1 1345776666554
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=1.8e-05 Score=59.97 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=74.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.|+..|+.... .+.+|.+||.++.+++++.+|+. .+++++|+.++...+++..+...+.. ++..++.|+
T Consensus 151 ~~Ll~~le~~~~--------~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 221 (353)
T 1sxj_D 151 SALRRTMETYSG--------VTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL 221 (353)
T ss_dssp HHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCC--------CceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456666665533 45677789999999999999997 89999999999999999988654432 355688899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGK---NSTPSQPKLLQAER 119 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~---~~~i~~~dl~~a~~ 119 (133)
+.+.|- .+.+.+....+...... ...++.+++.+.+.
T Consensus 222 ~~~~G~-~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 222 DISAGD-LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHTSSC-HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHcCCC-HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999874 44443322222222211 12688888877654
No 57
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.16 E-value=4.7e-05 Score=58.07 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=74.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.|+..++... .++++|++||.++.+++++.+|+ ..+++++|+.++..++++..+++.+.. ++..+..++
T Consensus 137 ~~Ll~~le~~~--------~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 137 NALLKTLEEPP--------EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp HHHHHHHHSCC--------SSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHhcCC--------CceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666666543 27889999999999999999998 789999999999999999988654433 344578899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
+.+.| +..++...+..+.... ...++.+++.+.
T Consensus 208 ~~~~G-~~r~~~~~l~~~~~~~--~~~i~~~~v~~~ 240 (373)
T 1jr3_A 208 RAAEG-SLRDALSLTDQAIASG--DGQVSTQAVSAM 240 (373)
T ss_dssp HHSSS-CHHHHHHHHHHHHHHT--TTCBCHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHhc--CCcccHHHHHHH
Confidence 99987 6666654433322222 345777776655
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.07 E-value=7.4e-06 Score=62.05 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=65.5
Q ss_pred cEEEEEeeCCCC---CCCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623 23 SIVILGASNFPW---NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS 96 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~ 96 (133)
..+|++++|.|. .+++++.+||+ ..+++++ +.++|..|++.++...+.. ++..++.|++.+ | ..+++....
T Consensus 132 ~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l 208 (324)
T 1l8q_A 132 KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKI 208 (324)
T ss_dssp CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHH
T ss_pred CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHH
Confidence 567777777776 69999999997 6789999 9999999999999754443 345588899998 4 667775433
Q ss_pred HHHHHH------hcCCCCC-CHHHHHHHHH
Q psy15623 97 YTKKTF------CGKNSTP-SQPKLLQAER 119 (133)
Q Consensus 97 ~~~~~~------~~~~~~i-~~~dl~~a~~ 119 (133)
..+... ..+...+ +.+++.+++.
T Consensus 209 ~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 209 KLIKLKGFEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence 222222 0122345 6677776655
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.04 E-value=1.9e-05 Score=66.61 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=53.5
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC----CCC-ChhcHHHHHHHc-----CCC
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQL-----EGN 87 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~----~~~-~~~~~~~la~~t-----~G~ 87 (133)
.+.+|+|||... .+|+++.||| ..|+|+.|+.+++.+||+.+.... ... .+..+..+++.+ +++
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 789999999988 7999999999 569999999999999999887653 222 344456666654 355
Q ss_pred CHHHHH
Q psy15623 88 AVQQKV 93 (133)
Q Consensus 88 sgadi~ 93 (133)
.+....
T Consensus 370 ~p~~ai 375 (758)
T 3pxi_A 370 LPDKAI 375 (758)
T ss_dssp TTHHHH
T ss_pred CCcHHH
Confidence 555554
No 60
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.03 E-value=2.6e-05 Score=62.35 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=69.6
Q ss_pred cEEEEEee--CCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------CCC-ChhcHHHHHHHcCCCCHHHH
Q psy15623 23 SIVILGAS--NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA-SDLDLELVSDQLEGNAVQQK 92 (133)
Q Consensus 23 ~v~vi~aT--n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------~~~-~~~~~~~la~~t~G~sgadi 92 (133)
.+++|++| |....+++++++||. ++.++.|+.+++..+++..+... ... ++..++.|++.+.| ..+++
T Consensus 134 ~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~l 211 (447)
T 3pvs_A 134 TITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRA 211 (447)
T ss_dssp SCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHH
T ss_pred ceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHH
Confidence 56777777 555689999999997 78899999999999999999762 111 34457888888776 55666
Q ss_pred HHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q psy15623 93 VMKSYTKKTFCG----KNSTPSQPKLLQAER 119 (133)
Q Consensus 93 ~~~~~~~~~~~~----~~~~i~~~dl~~a~~ 119 (133)
.+.+..+...+. +...|+.+++.+++.
T Consensus 212 ln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred HHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 655554444443 335799999988765
No 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=4.3e-05 Score=57.08 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS 81 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 81 (133)
+.|+..|+.... ++.+|++||.++.+++++.+|+. .+++++|+.++...+++..+...+.. ++..+..++
T Consensus 128 ~~L~~~le~~~~--------~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 198 (327)
T 1iqp_A 128 QALRRTMEMFSS--------NVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL 198 (327)
T ss_dssp HHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred HHHHHHHHhcCC--------CCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345666665432 67888899999999999999998 89999999999999999988765543 455678888
Q ss_pred HHcCCCCHHHHH
Q psy15623 82 DQLEGNAVQQKV 93 (133)
Q Consensus 82 ~~t~G~sgadi~ 93 (133)
+.+.| +.+.+.
T Consensus 199 ~~~~g-~~r~~~ 209 (327)
T 1iqp_A 199 YIAEG-DMRRAI 209 (327)
T ss_dssp HHHTT-CHHHHH
T ss_pred HHCCC-CHHHHH
Confidence 88876 444443
No 62
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.00 E-value=1.3e-05 Score=60.63 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh-------c--CCCCC
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-------Q--VDLAS 73 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~-------~--~~~~~ 73 (133)
+.|+..++.... ++.+|++||.++.+++++.+||. .++|++|+.++|.+|++.++. . ..++.
T Consensus 124 ~~L~~~le~~~~--------~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~ 194 (324)
T 3u61_B 124 RHLRSFMEAYSS--------NCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD 194 (324)
T ss_dssp HHHHHHHHHHGG--------GCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC
T ss_pred HHHHHHHHhCCC--------CcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 345666665433 56888999999999999999995 799999999998877665542 2 23332
Q ss_pred hhcHHHHHHHcCCCCHH
Q psy15623 74 DLDLELVSDQLEGNAVQ 90 (133)
Q Consensus 74 ~~~~~~la~~t~G~sga 90 (133)
...++.+++.+.|-...
T Consensus 195 ~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 195 MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHHHHHTCSCTTH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 15578888887764333
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.00 E-value=0.00016 Score=54.97 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC---CCCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhc----CCCCCh
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFP---WNIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQ----VDLASD 74 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~---~~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~----~~~~~~ 74 (133)
..|+..++... . .++.+|++||.+ ..+++.+.+||. +.+++++|+.++..++++..+.. ..+ .+
T Consensus 150 ~~l~~~~~~~~-~------~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~ 221 (386)
T 2qby_A 150 YKLSRINSEVN-K------SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PD 221 (386)
T ss_dssp HHHHHHHHSCC-C--------EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CH
T ss_pred HHHhhchhhcC-C------CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CH
Confidence 34555565542 2 278999999987 578899999987 49999999999999999988753 222 34
Q ss_pred hcHHHHHHHcC---CCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623 75 LDLELVSDQLE---GNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 75 ~~~~~la~~t~---G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~ 122 (133)
..+..+++.+. |. +..+..++..+...+ .+...++.+++..++....
T Consensus 222 ~~~~~l~~~~~~~~G~-~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 222 NVIKLCAALAAREHGD-ARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 44677777776 53 444444433333333 3556899999998876554
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=6.5e-05 Score=56.03 Aligned_cols=92 Identities=15% Similarity=0.019 Sum_probs=66.4
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT 101 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~ 101 (133)
++.+|.+||.++.+++++.+|+. .+++++|+.++..++++..++..+.. ++..+..+++.+.|-...-+..+.... .
T Consensus 137 ~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~-~ 214 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV-A 214 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-h
Confidence 67888899999999999999987 89999999999999999988654333 355678899998774433333332222 1
Q ss_pred HhcCCCCCCHHHHHHHHH
Q psy15623 102 FCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 102 ~~~~~~~i~~~dl~~a~~ 119 (133)
. ...++.+++.+.+.
T Consensus 215 ~---~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 215 G---HGLVNADNVFKIVD 229 (323)
T ss_dssp H---HSSBCHHHHHHHHT
T ss_pred c---CCCcCHHHHHHHHC
Confidence 1 13577777776654
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.97 E-value=0.00012 Score=55.86 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=73.1
Q ss_pred cEEEEEeeCCC---CCCCHHHHhcccc-EEEcCCCCHHHHHHHHHHHHhc---CCCCChhcHHHHHHHcCCC--------
Q psy15623 23 SIVILGASNFP---WNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQ---VDLASDLDLELVSDQLEGN-------- 87 (133)
Q Consensus 23 ~v~vi~aTn~~---~~lD~al~rRfd~-~i~i~~P~~~~R~~il~~~~~~---~~~~~~~~~~~la~~t~G~-------- 87 (133)
++.+|++||.+ +.+++.+.+||.. .+++++++.++..++++..+.. ...-++..+..+++.+.+.
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred CEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 78999999988 7899999999986 8999999999999999998864 1122455678899999422
Q ss_pred CHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhhh
Q psy15623 88 AVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPFR 122 (133)
Q Consensus 88 sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~~ 122 (133)
.+..+...+..+... ..+...++.+++..+.....
T Consensus 239 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 239 DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 344444444333332 23556799999998876543
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.88 E-value=0.00011 Score=58.60 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=64.2
Q ss_pred CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHc-CCCCHHHHHHHHHHHHH--HhcCCCC
Q psy15623 33 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQL-EGNAVQQKVMKSYTKKT--FCGKNST 108 (133)
Q Consensus 33 ~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t-~G~sgadi~~~~~~~~~--~~~~~~~ 108 (133)
|+.|+|.+++||.. +.+++|+.++..++++..+...... ++..+..+++.+ .| +++....++..+.. ...+...
T Consensus 347 ~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~ 424 (456)
T 2c9o_A 347 PHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDS 424 (456)
T ss_dssp ETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSS
T ss_pred cccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCc
Confidence 88999999999988 5999999999999999887543332 344567788887 66 66666554444333 3356778
Q ss_pred CCHHHHHHHHHh
Q psy15623 109 PSQPKLLQAERP 120 (133)
Q Consensus 109 i~~~dl~~a~~~ 120 (133)
++.+|+.+++.-
T Consensus 425 v~~~~v~~~~~~ 436 (456)
T 2c9o_A 425 IEKEHVEEISEL 436 (456)
T ss_dssp BCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998763
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.83 E-value=1.9e-05 Score=59.01 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=57.5
Q ss_pred cEEEEEeeCC--------------------------CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------
Q psy15623 23 SIVILGASNF--------------------------PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV------- 69 (133)
Q Consensus 23 ~v~vi~aTn~--------------------------~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~------- 69 (133)
++++|+|||. ...++|++++||+..+.+++|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6789999998 5578999999999999999999999999999988542
Q ss_pred --CCC-ChhcHHHHHHHcC--CCCHHHHHHH
Q psy15623 70 --DLA-SDLDLELVSDQLE--GNAVQQKVMK 95 (133)
Q Consensus 70 --~~~-~~~~~~~la~~t~--G~sgadi~~~ 95 (133)
... ++..+..|++..- ...+++|...
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~ 270 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRV 270 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHH
Confidence 111 3445677777665 5677888643
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.81 E-value=4.7e-05 Score=64.03 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=67.7
Q ss_pred cEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCC-----C
Q psy15623 23 SIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEG-----N 87 (133)
Q Consensus 23 ~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G-----~ 87 (133)
.+.+|++||.+ ..+|+++.|||+ .++++.|+.++|.+||+.+... ..+. .+..+..++..+.| +
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 78899999975 368999999998 7999999999999999988754 2222 34456777777655 4
Q ss_pred CHHHHHHHHHHHHHH--h----cCCCCCCHHHHHHHHHhh
Q psy15623 88 AVQQKVMKSYTKKTF--C----GKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 88 sgadi~~~~~~~~~~--~----~~~~~i~~~dl~~a~~~~ 121 (133)
.+..+..++..+... . .....++.+|+.+++..+
T Consensus 394 lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 444554333222221 1 234678889998887654
No 69
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.74 E-value=7e-05 Score=60.79 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=58.9
Q ss_pred EEEEeeCCCCC---CCHHHHhccccEEEcCCCCH-HHHHHHHHHHHh-------------------------cCCCCChh
Q psy15623 25 VILGASNFPWN---IDDAFLRRLEKRIYVPLPSS-SGRQELLRLILR-------------------------QVDLASDL 75 (133)
Q Consensus 25 ~vi~aTn~~~~---lD~al~rRfd~~i~i~~P~~-~~R~~il~~~~~-------------------------~~~~~~~~ 75 (133)
++|+|||.+.. ..+++++||..++++++|+. ++|..|++.... +..++ +.
T Consensus 151 ~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 151 LLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 57888886332 45699999999999999987 788999876542 11222 11
Q ss_pred cHHHHHHHc---------CCCCHHHHHHHHHH--HHHHhcCCCCCCHHHHH
Q psy15623 76 DLELVSDQL---------EGNAVQQKVMKSYT--KKTFCGKNSTPSQPKLL 115 (133)
Q Consensus 76 ~~~~la~~t---------~G~sgadi~~~~~~--~~~~~~~~~~i~~~dl~ 115 (133)
-++.+++.. .|.|++.+...... +.+...++..++.+|+.
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 234444333 58899988754333 33444666677777776
No 70
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=0.0002 Score=54.39 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=63.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-C-hhcHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-S-DLDLELV 80 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~-~~~~~~l 80 (133)
+.|+..|+.... ++.+|.+||.++.+.+++.+|+ ..++|++|+.++...+++..+++.+.. + +..+..+
T Consensus 152 ~~L~~~le~~~~--------~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i 222 (354)
T 1sxj_E 152 AALRRTMEKYSK--------NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRI 222 (354)
T ss_dssp HHHHHHHHHSTT--------TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHH
T ss_pred HHHHHHHHhhcC--------CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 456666665432 5788888999999999999999 889999999999999999988654433 3 4558889
Q ss_pred HHHcCCCCHHHHHH
Q psy15623 81 SDQLEGNAVQQKVM 94 (133)
Q Consensus 81 a~~t~G~sgadi~~ 94 (133)
++.+.| +.+++..
T Consensus 223 ~~~~~G-~~r~a~~ 235 (354)
T 1sxj_E 223 AQASNG-NLRVSLL 235 (354)
T ss_dssp HHHHTT-CHHHHHH
T ss_pred HHHcCC-CHHHHHH
Confidence 998876 4444443
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.00067 Score=54.85 Aligned_cols=92 Identities=10% Similarity=0.089 Sum_probs=59.4
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc--CCCCChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ--VDLASDLDLELVSDQLEGNAVQQKVMKSYTKK 100 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~ 100 (133)
++++++++.....+++ ++|+...++|+.|+.+++.+++...+.. ..++. ..+..|++.+.| |+........
T Consensus 181 ~iIli~~~~~~~~l~~--l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~G----diR~~i~~L~ 253 (516)
T 1sxj_A 181 PLILICNERNLPKMRP--FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRG----DIRQVINLLS 253 (516)
T ss_dssp CEEEEESCTTSSTTGG--GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTT----CHHHHHHHHT
T ss_pred CEEEEEcCCCCccchh--hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC----cHHHHHHHHH
Confidence 5666666655555654 3566669999999999999999887754 44443 448889998865 4433222222
Q ss_pred HHhcCCCCCCHHHHHHHHHhh
Q psy15623 101 TFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 101 ~~~~~~~~i~~~dl~~a~~~~ 121 (133)
..+.....++.+++.+++...
T Consensus 254 ~~~~~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 254 TISTTTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHSSCCCTTHHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHhh
Confidence 223344568877777665533
No 72
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.44 E-value=0.00064 Score=51.88 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=56.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 82 (133)
|.||..|+.-. +++++|.+||.++.++|++++|+. .++|++|+.++..++++... .+ ++..+..+++
T Consensus 126 naLLk~lEep~--------~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~ 192 (334)
T 1a5t_A 126 NALLKTLEEPP--------AETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALR 192 (334)
T ss_dssp HHHHHHHTSCC--------TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHH
T ss_pred HHHHHHhcCCC--------CCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHH
Confidence 56777776432 378888899999999999999985 79999999999999988765 22 3455677888
Q ss_pred HcCCCC
Q psy15623 83 QLEGNA 88 (133)
Q Consensus 83 ~t~G~s 88 (133)
.+.|--
T Consensus 193 ~s~G~~ 198 (334)
T 1a5t_A 193 LSAGSP 198 (334)
T ss_dssp HTTTCH
T ss_pred HcCCCH
Confidence 887643
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.44 E-value=4.3e-05 Score=52.21 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=35.4
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELL 62 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il 62 (133)
++.+|++||.++ .+|+++.+||+ .+++++|+.++|.+||
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 678999999887 79999999999 6999999999999876
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.0014 Score=49.85 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=49.8
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCC
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG 86 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G 86 (133)
.+.+|.+||.++.+.+++.+|+. .+.++.|+.++..+++...++...+. ++..+..+++.+.|
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56777889999999999999997 78999999999999998888543332 34456778887765
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.00038 Score=58.64 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=61.4
Q ss_pred HHHHHHHhhCCCCCC---CCCCCCcEEEEEeeCCCCC------------CCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623 2 KSELLCHMDGIASTT---NADPTKSIVILGASNFPWN------------IDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~---~~~~~~~v~vi~aTn~~~~------------lD~al~rRfd~~i~i~~P~~~~R~~il~~~~ 66 (133)
.+.||+.||.-.-.. ......++++|+|||.+.. ++|+++.|||..|.|++|+.+++..|++.++
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 466788887522100 0112236899999998765 8999999999999999999999999999888
Q ss_pred hcC-------CCC---ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623 67 RQV-------DLA---SDLDLELVSDQL--EGNAVQQKVM 94 (133)
Q Consensus 67 ~~~-------~~~---~~~~~~~la~~t--~G~sgadi~~ 94 (133)
... ... ++.-++.|++.. ..+..++|..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 715 (758)
T 3pxi_A 676 DQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRR 715 (758)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHH
T ss_pred HHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHH
Confidence 542 111 333456676643 3456667754
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.00037 Score=58.55 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=63.8
Q ss_pred HHHHHHHhhCCCCC--CCC-CCCCcEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCC
Q psy15623 2 KSELLCHMDGIAST--TNA-DPTKSIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLP 53 (133)
Q Consensus 2 ~~~lL~~lD~~~~~--~~~-~~~~~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P 53 (133)
.+.|++.||.-.-. .+. -.-.++++|+|||.+. .++|++++|||..|.|++|
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l 653 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCC
Confidence 46777888742110 000 0002689999999865 6899999999999999999
Q ss_pred CHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623 54 SSSGRQELLRLILRQV---------DLA-SDLDLELVSDQL--EGNAVQQKVM 94 (133)
Q Consensus 54 ~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t--~G~sgadi~~ 94 (133)
+.+++..|++.++... .+. ++.-++.|++.. .++++++|..
T Consensus 654 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~ 706 (758)
T 1r6b_X 654 STDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMAR 706 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHH
Confidence 9999999999988632 111 234466677655 3566778764
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.06 E-value=0.0011 Score=56.59 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=52.9
Q ss_pred cEEEEEeeCCCC----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC----CCC-ChhcHHHHHHHcC-----CCC
Q psy15623 23 SIVILGASNFPW----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQLE-----GNA 88 (133)
Q Consensus 23 ~v~vi~aTn~~~----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~----~~~-~~~~~~~la~~t~-----G~s 88 (133)
.+.+|++||.++ .+|+++.|||+. ++++.|+.+++.+||+.++... .+. .+..+..+++.+. +|.
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRL 377 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCT
T ss_pred CeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccC
Confidence 678999999875 589999999996 9999999999999999877532 222 3444666776654 455
Q ss_pred HHHHHH
Q psy15623 89 VQQKVM 94 (133)
Q Consensus 89 gadi~~ 94 (133)
+.....
T Consensus 378 p~kai~ 383 (854)
T 1qvr_A 378 PDKAID 383 (854)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 555543
No 78
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.94 E-value=0.00081 Score=63.73 Aligned_cols=45 Identities=24% Similarity=0.453 Sum_probs=41.8
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~ 68 (133)
++.+|||||.|. .|||+++||| ..++++.|+.+++..|++.+++.
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 589999999994 8999999999 88999999999999999999864
No 79
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.68 E-value=0.011 Score=45.23 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCHHHHhccccEEEcCCCCHHHHHHHHHH----HHhc-------CCCC---ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623 36 IDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILRQ-------VDLA---SDLDLELVSDQL--EGNAVQQKVM 94 (133)
Q Consensus 36 lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~~~-------~~~~---~~~~~~~la~~t--~G~sgadi~~ 94 (133)
++|+++.||+..+.+++|+.+.+.+|+.. +++. .... ++.-++.|++.+ ..+.+++|.+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~ 313 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRS 313 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHH
Confidence 78999999999999999999999999986 3321 1211 344467777643 4566788875
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.62 E-value=0.0032 Score=53.82 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=64.4
Q ss_pred HHHHHHHhhCCCCCCCCC---CCCcEEEEEeeCC--------------------------CCCCCHHHHhccccEEEcCC
Q psy15623 2 KSELLCHMDGIASTTNAD---PTKSIVILGASNF--------------------------PWNIDDAFLRRLEKRIYVPL 52 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~---~~~~v~vi~aTn~--------------------------~~~lD~al~rRfd~~i~i~~ 52 (133)
.+.||+.||.-.-.++.. .-.++++|+|||. ...+.|+++.||+..+.+.+
T Consensus 677 ~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p 756 (854)
T 1qvr_A 677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP 756 (854)
T ss_dssp HHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred HHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence 467788887432111000 0126889999997 23578899999999999999
Q ss_pred CCHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHcC--CCCHHHHHHH
Q psy15623 53 PSSSGRQELLRLILRQV---------DLA-SDLDLELVSDQLE--GNAVQQKVMK 95 (133)
Q Consensus 53 P~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t~--G~sgadi~~~ 95 (133)
|+.++...|++.++... .+. ++.-++.|++..- .+..++|...
T Consensus 757 l~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~ 811 (854)
T 1qvr_A 757 LTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV 811 (854)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHH
Confidence 99999999999888631 111 3444677777765 5677888643
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.34 E-value=0.0015 Score=44.29 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=27.5
Q ss_pred cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCC
Q psy15623 23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPS 54 (133)
Q Consensus 23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~ 54 (133)
++++|++||.+. .+|+++.+||+. +++++|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 688999999875 699999999995 9999986
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.33 E-value=0.043 Score=41.95 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=66.5
Q ss_pred cEEEEEeeCCCC---CCC---HHHHhccccEEEcCCCCHHHHHHHHHHHHhcC---CCCChhcHHHHHHHcC------CC
Q psy15623 23 SIVILGASNFPW---NID---DAFLRRLEKRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLE------GN 87 (133)
Q Consensus 23 ~v~vi~aTn~~~---~lD---~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~~~~la~~t~------G~ 87 (133)
++.+|++||.++ .++ +.+.+||...+++++++.++..+++...+... ...++..+..+++.|. |.
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc
Confidence 899999998776 344 66777887779999999999999998776531 1123455788899998 75
Q ss_pred CHHHHHHHHHHHH--HHhcCCCCCCHHHHHHHHHhh
Q psy15623 88 AVQQKVMKSYTKK--TFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 88 sgadi~~~~~~~~--~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+..+..++..+. +...+...++.+++..++...
T Consensus 259 -p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 259 -ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 444443333222 223455568888887776544
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.31 E-value=0.014 Score=47.91 Aligned_cols=97 Identities=13% Similarity=0.241 Sum_probs=65.1
Q ss_pred cEEEEEeeCCC--CCCCHHHHhccc---cEEEcCC--C-CHHHHHHHHHHHHhcC------CCCChhcHHHHHHHc---C
Q psy15623 23 SIVILGASNFP--WNIDDAFLRRLE---KRIYVPL--P-SSSGRQELLRLILRQV------DLASDLDLELVSDQL---E 85 (133)
Q Consensus 23 ~v~vi~aTn~~--~~lD~al~rRfd---~~i~i~~--P-~~~~R~~il~~~~~~~------~~~~~~~~~~la~~t---~ 85 (133)
++.||+|||+. +.++|++++||+ ..+.++. | ..+....+++.+.+.. ..-++.-+..|.+.. .
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~ 331 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRA 331 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTT
T ss_pred eEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhh
Confidence 67899999986 689999999997 4565542 2 4556666665554321 111334456666544 5
Q ss_pred CC------CHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHH
Q psy15623 86 GN------AVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAER 119 (133)
Q Consensus 86 G~------sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~ 119 (133)
|- +.+++.+++..+...+ .++..++.+|+.+|+.
T Consensus 332 g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 332 GRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp CSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 63 7899987655555444 5667899999999974
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.75 E-value=0.013 Score=44.42 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=43.9
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL 66 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~ 66 (133)
|.||..|+.-.. .+++|.+||.|+.|.|++.+| .++|++|+.++..++++..+
T Consensus 100 naLLk~LEep~~--------~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 100 NAFLKALEEPPE--------YAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHTHHHHHSCCT--------TEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC--------CeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 557777775433 678888888899999999999 99999999999999888776
No 85
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.018 Score=44.06 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=40.0
Q ss_pred CcEEEEEeeCCCCCCC----HHHHhccc-cEEEcCCCCHHHHHHHHHHHHhcC
Q psy15623 22 KSIVILGASNFPWNID----DAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV 69 (133)
Q Consensus 22 ~~v~vi~aTn~~~~lD----~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~~ 69 (133)
.++++|+++|..+..+ +++.+||. .+|+|++++.++-.+|++.-++..
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 3899999999987644 44566997 689999999999999999988653
No 86
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.40 E-value=0.019 Score=43.25 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=49.6
Q ss_pred CcEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCHH----HHHHHHHHHHhc----CCC---C-ChhcHHHHHH
Q psy15623 22 KSIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSSS----GRQELLRLILRQ----VDL---A-SDLDLELVSD 82 (133)
Q Consensus 22 ~~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~~----~R~~il~~~~~~----~~~---~-~~~~~~~la~ 82 (133)
.++.+|+|||.+ ..+++.+..||. .+.+.+|... +...+++.++.. ... . ++.-+..|..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 468899999986 346778888886 5555555544 444566666543 211 1 2333555665
Q ss_pred HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHH
Q psy15623 83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKL 114 (133)
Q Consensus 83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl 114 (133)
..-.-..++|.+....+...+.+ ..++.+|+
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~~~-~~i~~~~l 245 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLLTG-EYISEREL 245 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHCCS-SSBCGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC-CcccHHhh
Confidence 54112445666554444444432 33444433
No 87
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.31 E-value=0.16 Score=38.34 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=63.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC------CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-Chh
Q psy15623 3 SELLCHMDGIASTTNADPTKSIVILGASNFP------WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDL 75 (133)
Q Consensus 3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~------~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~ 75 (133)
+.|+..++...+ .+++|.+|+.+ ..+-+++.+|. ..+++..|+.++....++..++..++. ++.
T Consensus 95 ~aLl~~le~p~~--------~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~ 165 (343)
T 1jr3_D 95 EQLLTLTGLLHD--------DLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDA 165 (343)
T ss_dssp HHHHHHHTTCBT--------TEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHH
T ss_pred HHHHHHHhcCCC--------CeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 345656654432 34444444443 34667777777 478999999999999999988776544 345
Q ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623 76 DLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE 118 (133)
Q Consensus 76 ~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~ 118 (133)
.+..|++.++| +.+++.+......... +...++.+++.+.+
T Consensus 166 a~~~l~~~~~g-dl~~~~~elekl~l~~-~~~~It~e~V~~~~ 206 (343)
T 1jr3_D 166 ANQVLCYCYEG-NLLALAQALERLSLLW-PDGKLTLPRVEQAV 206 (343)
T ss_dssp HHHHHHHSSTT-CHHHHHHHHHHHHHHC-TTCEECHHHHHHHH
T ss_pred HHHHHHHHhch-HHHHHHHHHHHHHHhc-CCCCCCHHHHHHHH
Confidence 57778877765 4444433221111222 34467877776553
No 88
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=94.92 E-value=0.62 Score=37.80 Aligned_cols=102 Identities=13% Similarity=0.006 Sum_probs=60.3
Q ss_pred cEEEEEeeCCCC-----------CCCHHHHhccccEEE-cCCCCHHHH---------HHHHHHHH---h-c--CCCCChh
Q psy15623 23 SIVILGASNFPW-----------NIDDAFLRRLEKRIY-VPLPSSSGR---------QELLRLIL---R-Q--VDLASDL 75 (133)
Q Consensus 23 ~v~vi~aTn~~~-----------~lD~al~rRfd~~i~-i~~P~~~~R---------~~il~~~~---~-~--~~~~~~~ 75 (133)
++.||||+|... .|+++++.|||..+. .+.|+.+.- .+.++.+. + . .+.-++.
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e 418 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE 418 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence 789999999865 899999999997655 466765442 12233222 3 1 1111221
Q ss_pred cHHHHHH-----------------HcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623 76 DLELVSD-----------------QLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAERPFRRS 124 (133)
Q Consensus 76 ~~~~la~-----------------~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~~~~~s 124 (133)
..+.|++ ..-|.|++.+..+ .+.+.+....+..++.+|+.+|++-++.|
T Consensus 419 a~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 419 ARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 1111110 2458899999865 44444555788899999999998866554
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.52 E-value=0.064 Score=41.07 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=50.4
Q ss_pred CCCHHHHhccccEEEcCCCCHHHHHHHHHH----HHh---------cCCCC-ChhcHHHHHHHcC--CCCHHHHHHHHHH
Q psy15623 35 NIDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILR---------QVDLA-SDLDLELVSDQLE--GNAVQQKVMKSYT 98 (133)
Q Consensus 35 ~lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~~---------~~~~~-~~~~~~~la~~t~--G~sgadi~~~~~~ 98 (133)
.+.|++..||+..+.|++++.++...|+.. +++ +..+. ++.-+..|++... +..+++|...+..
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred CCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 367888889999999999999999999962 221 11111 3344677777743 3567787643222
Q ss_pred HHH-----Hhc---CCCCCCHHHHHHHH
Q psy15623 99 KKT-----FCG---KNSTPSQPKLLQAE 118 (133)
Q Consensus 99 ~~~-----~~~---~~~~i~~~dl~~a~ 118 (133)
+.. ... ....|+.+++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 335 FCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 111 111 12257777776554
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.13 E-value=0.061 Score=39.01 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=48.2
Q ss_pred cEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCHH----HHHHHHHHHHhc----CCCC-----ChhcHHHHHH
Q psy15623 23 SIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSSS----GRQELLRLILRQ----VDLA-----SDLDLELVSD 82 (133)
Q Consensus 23 ~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~~----~R~~il~~~~~~----~~~~-----~~~~~~~la~ 82 (133)
++.+|+|||.+ ..+++++.+||.. +.+.+|... +...+++.+++. .... ++..++.|..
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred CeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 67899999985 3578999999974 344444444 444555555432 2221 2233444544
Q ss_pred HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHH
Q psy15623 83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKL 114 (133)
Q Consensus 83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl 114 (133)
..-.-..++|.+....+...+.+ ..++.+|+
T Consensus 220 ~~~~gn~reL~~~l~~~~~~~~~-~~i~~~~l 250 (265)
T 2bjv_A 220 YRWPGNIRELKNVVERSVYRHGT-SDYPLDDI 250 (265)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHCC-SSSCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC-CcCcHHHc
Confidence 33222445666554444444432 34554444
No 91
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.52 E-value=0.18 Score=40.29 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=43.8
Q ss_pred HHHHHHhhCCCCCC--CCCCCCcEEEEEee----CCCCCCCHHHHhccccEEEcCCCCHHHHHHHHH
Q psy15623 3 SELLCHMDGIASTT--NADPTKSIVILGAS----NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 63 (133)
Q Consensus 3 ~~lL~~lD~~~~~~--~~~~~~~v~vi~aT----n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~ 63 (133)
..||.-||+-..+. ..-..++|++|+|. +.|.++-|.++.||+.+++++..+.++..+|+.
T Consensus 280 ~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 280 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCCCCHHHHHHHHH
Confidence 46888888742110 00012378999887 245556688999999999999999999999993
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.02 E-value=1.4 Score=43.10 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=40.0
Q ss_pred cEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623 23 SIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ 68 (133)
Q Consensus 23 ~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~ 68 (133)
++.+|||.|.| ..|+++++|||-. +.++.|+.++-..|+..++..
T Consensus 1422 d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1422 KIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCHHHHHHHHHHHHHH
Confidence 67899999988 4699999999987 999999999999998877654
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.95 E-value=0.95 Score=31.91 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=29.7
Q ss_pred cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHH
Q psy15623 23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGR 58 (133)
Q Consensus 23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R 58 (133)
++-+|.+|+.+..||.++.+|++.+++++.|....+
T Consensus 123 ~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 123 GIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMR 158 (199)
T ss_dssp TCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCCE
T ss_pred CeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCcc
Confidence 566788888899999998889999999988754433
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=73.02 E-value=6.7 Score=28.62 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=33.8
Q ss_pred ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCH
Q psy15623 43 RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAV 89 (133)
Q Consensus 43 Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sg 89 (133)
|+...+++++.+.++-.+++...+...+...+ +...+...|.|+..
T Consensus 199 r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~ 244 (357)
T 2fna_A 199 RAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG 244 (357)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH
T ss_pred CccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH
Confidence 66788999999999999999887753322222 23788889988654
No 95
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=71.85 E-value=11 Score=28.89 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=49.5
Q ss_pred CcEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCH----HHHHHHHHHHHhc----CCCC-ChhcHHHHHHHc-
Q psy15623 22 KSIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSS----SGRQELLRLILRQ----VDLA-SDLDLELVSDQL- 84 (133)
Q Consensus 22 ~~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~----~~R~~il~~~~~~----~~~~-~~~~~~~la~~t- 84 (133)
.+|-+|+|||.. ..+.+.+..|+.. +.+.+|.. ++...+.+.++.+ .... ..++-+.+....
T Consensus 271 ~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 271 VNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred ccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 367799999963 3344555555532 33444444 4555566666643 2222 123333333222
Q ss_pred CCCCHH--HHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623 85 EGNAVQ--QKVMKSYTKKTFCGKNSTPSQPKLLQA 117 (133)
Q Consensus 85 ~G~sga--di~~~~~~~~~~~~~~~~i~~~dl~~a 117 (133)
..|.|. +|.+....+...+.+ ..++.+|+-..
T Consensus 350 ~~wpGNvreL~~~i~~~~~~~~~-~~i~~~~l~~~ 383 (387)
T 1ny5_A 350 YPWYGNVRELKNVIERAVLFSEG-KFIDRGELSCL 383 (387)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCCS-SEECHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhCCC-CcCcHHHCcHh
Confidence 446554 777665555555544 46888887543
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=67.20 E-value=18 Score=26.25 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=35.5
Q ss_pred ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCH
Q psy15623 43 RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAV 89 (133)
Q Consensus 43 Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sg 89 (133)
|+...+++++.+.++-.+++...+...+.. ++..+..+...|.|+..
T Consensus 193 ~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 193 RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp CCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred CccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 667789999999999999998877644332 34567788888888654
No 97
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.38 E-value=17 Score=21.36 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623 60 ELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKS 96 (133)
Q Consensus 60 ~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~ 96 (133)
++|+.|......-.+.|+..|+.++. +|..+++.-.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~ksk-ms~qqvkdwF 54 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASR-LSTQQVLDWF 54 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTT-CCHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhC-CCHHHHHHHH
Confidence 45666666666667899999999997 9999987543
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.67 E-value=1e+02 Score=30.21 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=55.5
Q ss_pred cEEEEEeeC----CCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcH--------HHHHHHcC-----
Q psy15623 23 SIVILGASN----FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDL--------ELVSDQLE----- 85 (133)
Q Consensus 23 ~v~vi~aTn----~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~--------~~la~~t~----- 85 (133)
...|++|.| ....|++++.+|| +.+.+..||.+...+|+-.-. +. .....+ ..+.++..
T Consensus 747 ~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~s~-Gf--~~a~~la~kiv~~~~l~~e~ls~q~hy 822 (2695)
T 4akg_A 747 HTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMILQIM-GF--EDSKSLASKIVHFLELLSSKCSSMNHY 822 (2695)
T ss_dssp TCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHHHH-HC--SSHHHHHHHHHHHHHHHHHHSCCCTTC
T ss_pred CceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHHHhc-CC--CchHHHHHHHHHHHHHHHHHhCcCCcc
Confidence 566788888 4567999999999 689999999998888864322 22 111111 12222332
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 86 GNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 86 G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
.|+-+.|+.+...+..+.... .....-+.+++...
T Consensus 823 dfglRalksvL~~ag~lkr~~-~~e~~~l~~al~~~ 857 (2695)
T 4akg_A 823 HFGLRTLKGVLRNCSPLISEF-GEGEKTVVESLKRV 857 (2695)
T ss_dssp CCSHHHHHHHHHHHHHHHHHS-CSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhccC-CcHHHHHHHHHHHh
Confidence 367788876555444433222 23344555665543
No 99
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.18 E-value=26 Score=28.75 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=37.8
Q ss_pred CcEEEEEeeCCCC--CCCHHHHhccccEEEcCCCCHHHHHHHHH
Q psy15623 22 KSIVILGASNFPW--NIDDAFLRRLEKRIYVPLPSSSGRQELLR 63 (133)
Q Consensus 22 ~~v~vi~aTn~~~--~lD~al~rRfd~~i~i~~P~~~~R~~il~ 63 (133)
-+|.+|.+|.+|. .|+..+..-|..+|-+.+.+..+...|+.
T Consensus 377 ~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 377 AGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4899999999998 89998888999999999999998888873
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=53.34 E-value=7.9 Score=25.04 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=18.2
Q ss_pred cEEEEEeeCCC-------CCCCHHHHhcccc-EEEcC
Q psy15623 23 SIVILGASNFP-------WNIDDAFLRRLEK-RIYVP 51 (133)
Q Consensus 23 ~v~vi~aTn~~-------~~lD~al~rRfd~-~i~i~ 51 (133)
++.+|+|||.+ ..+++.+..|+.. .|++|
T Consensus 106 ~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lP 142 (145)
T 3n70_A 106 PFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACL 142 (145)
T ss_dssp SSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECC
T ss_pred CEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCC
Confidence 56789999974 2456666666542 34444
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=52.30 E-value=7.2 Score=25.23 Aligned_cols=30 Identities=3% Similarity=0.259 Sum_probs=18.7
Q ss_pred cEEEEEeeCCC-CC----CCHHHHhccc-cEEEcCC
Q psy15623 23 SIVILGASNFP-WN----IDDAFLRRLE-KRIYVPL 52 (133)
Q Consensus 23 ~v~vi~aTn~~-~~----lD~al~rRfd-~~i~i~~ 52 (133)
++.+|+|||.+ .. +++.+..||. ..|++|+
T Consensus 106 ~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 106 RVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp TCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred CEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 67889999875 33 4455555754 4566653
No 102
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=51.07 E-value=52 Score=24.72 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=54.2
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh------ccccEEEcCCCC-------------HHHHHHH
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR------RLEKRIYVPLPS-------------SSGRQEL 61 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r------Rfd~~i~i~~P~-------------~~~R~~i 61 (133)
++.++..++|.+.+.+ .|.+||.-......+-. ||=-...|.+|. ..+-.+-
T Consensus 101 iK~~lf~~l~~~~~~~---------aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~ 171 (319)
T 3ado_A 101 LKRKIFAQLDSIVDDR---------VVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDR 171 (319)
T ss_dssp HHHHHHHHHHTTCCSS---------SEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhc---------ceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHH
Confidence 3678889999988765 34566644333333332 554444455442 2333333
Q ss_pred HHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623 62 LRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER 119 (133)
Q Consensus 62 l~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~ 119 (133)
...+.+.+.... + .+++.++||.+.-|..-....+...-.+...+.+|+-.+++
T Consensus 172 ~~~~~~~~gk~p-v---~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~ 225 (319)
T 3ado_A 172 THALMRKIGQSP-V---RVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMS 225 (319)
T ss_dssp HHHHHHHTTCEE-E---ECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHhCCcc-C---CcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334444332111 0 02345678888888642222222223334567777777765
No 103
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.75 E-value=37 Score=27.40 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=37.3
Q ss_pred cEEEEEeeCCCC--CCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623 23 SIVILGASNFPW--NIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64 (133)
Q Consensus 23 ~v~vi~aTn~~~--~lD~al~rRfd~~i~i~~P~~~~R~~il~~ 64 (133)
++-+|.+|.+|. .++..+..-|..+|-+.+.+..+...|+..
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 789999999998 689888889999999999999999988753
No 104
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=46.00 E-value=40 Score=19.46 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHH
Q psy15623 57 GRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVM 94 (133)
Q Consensus 57 ~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~ 94 (133)
+....|+..+..-+..+..+...||..| |+|-.+|..
T Consensus 14 ~Ql~~LE~~F~~~~YPs~~er~eLA~~t-gLt~~qVkv 50 (66)
T 3nau_A 14 EQIAHLKASFLQSQFPDDAEVYRLIEVT-GLARSEIKK 50 (66)
T ss_dssp HHHHHHHHHHHGGGSCCHHHHHHHHHHH-CCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHh-CcCHHHhhH
Confidence 3344555555554555678899999999 899999974
No 105
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=37.77 E-value=22 Score=22.34 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=23.1
Q ss_pred cEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHc
Q psy15623 46 KRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQL 84 (133)
Q Consensus 46 ~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t 84 (133)
+.+..|.|+.++-+.-|+.+...-+......++-+|+..
T Consensus 34 W~l~AP~PT~~eL~~wwee~q~np~yepP~q~~~laqel 72 (110)
T 2hg7_A 34 WNLRAPLPTQAELETWWEELQKNPPYEPPDQVELLAQEL 72 (110)
T ss_dssp ECSSSCCCCHHHHHHHHHHHHHSCCCC------------
T ss_pred hccCCCCCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 446679999999999999999887666555565555543
No 106
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.82 E-value=32 Score=20.28 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHH
Q psy15623 51 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKV 93 (133)
Q Consensus 51 ~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~ 93 (133)
+.|..++-+.+|+.++..-+-.+..++..||+.+. +.-.-++
T Consensus 9 ~~~~~k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lg-L~~~VVr 50 (71)
T 2da7_A 9 PINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVG-LPQEFVK 50 (71)
T ss_dssp CCCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHT-CCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCHHHHH
Confidence 45666777899999987766677788999998874 8777775
No 107
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=36.05 E-value=2.2 Score=33.08 Aligned_cols=28 Identities=4% Similarity=-0.110 Sum_probs=22.6
Q ss_pred EEEEEeeCCCCCCCHHHHh--ccccEEEcCC
Q psy15623 24 IVILGASNFPWNIDDAFLR--RLEKRIYVPL 52 (133)
Q Consensus 24 v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~ 52 (133)
|.|+++||+++.+ +++++ |++..++...
T Consensus 255 v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 255 VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4678889999999 68887 8888877755
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=33.48 E-value=7.4 Score=29.81 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh
Q psy15623 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR 42 (133)
Q Consensus 2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r 42 (133)
++++|..|+++.... ++.+|++|| |...|+++..
T Consensus 211 lrqlL~~L~~~~k~~------gvtVIlttn-p~s~deal~~ 244 (331)
T 2vhj_A 211 AFDLLSDIGAMAASR------GCVVIASLN-PTSNDDKIVE 244 (331)
T ss_dssp HHHHHHHHHHHHHHH------TCEEEEECC-CSSCSSSHHH
T ss_pred HHHHHHHHHHHHhhC------CCEEEEEeC-CcccchhHHH
Confidence 357777887776544 678888888 7788877643
No 109
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=31.11 E-value=66 Score=18.73 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHH
Q psy15623 54 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMK 95 (133)
Q Consensus 54 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~ 95 (133)
+.++-.. |...+..++....-.+..||+..+|-|+.+++..
T Consensus 22 T~eEd~~-L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~R 62 (73)
T 2cqr_A 22 TQNQQKL-LELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR 62 (73)
T ss_dssp CHHHHHH-HHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHH
Confidence 3444444 4444455554456789999999999999999754
No 110
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=31.07 E-value=32 Score=19.46 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=17.2
Q ss_pred EEEcCCCCHHHHHHHHHHHHh
Q psy15623 47 RIYVPLPSSSGRQELLRLILR 67 (133)
Q Consensus 47 ~i~i~~P~~~~R~~il~~~~~ 67 (133)
--+.-+|+...|+++|..+++
T Consensus 38 pRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 38 PDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp TTGGGSSCHHHHHHHHHHHHT
T ss_pred CCeeecCChHHHHHHHHHHhh
Confidence 345568999999999998875
No 111
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.11 E-value=63 Score=16.78 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=13.4
Q ss_pred HHHcCCCCHHHHHHHHHHH
Q psy15623 81 SDQLEGNAVQQKVMKSYTK 99 (133)
Q Consensus 81 a~~t~G~sgadi~~~~~~~ 99 (133)
|-.-+|||+.++.++....
T Consensus 11 alkkegfspeelaalesel 29 (48)
T 1g6u_A 11 ALKKEGFSPEELAALESEL 29 (48)
T ss_dssp HHHHTTCSHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 4456899999997654443
No 112
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=29.91 E-value=63 Score=22.71 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhcHHHHHHHc--CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623 54 SSSGRQELLRLILRQVDLASDLDLELVSDQL--EGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPF 121 (133)
Q Consensus 54 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t--~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~~ 121 (133)
+.+.-.+++..|-... +..+..+.+.+.+ -|+++.|+..++.+-...+.....+|.+++..++...
T Consensus 5 ~~~~l~~lF~~Y~d~~--~~~I~~dG~~~~~~DLgv~ped~~~LvLaw~l~a~~~g~ftr~ef~~G~~~l 72 (199)
T 3kev_A 5 DKKAILELFQTYKEPL--GNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTCEFSEKEFVEGLANL 72 (199)
T ss_dssp CHHHHHHHHHHHCCTT--SSEECHHHHHHHHHHTTCCTTSHHHHHHHHHTTCCSTTCEEHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCC--cCccCHHHHHHHHHHcCCChhhHHHHHHHHHcCCCccCcccHHHHHHHHHHh
Confidence 4455666777775322 2357777777777 4899999988877777777778889999999987643
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=26.59 E-value=37 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=17.3
Q ss_pred EEEeeC-CCCCCC--HHHHhccccEEEcCC
Q psy15623 26 ILGASN-FPWNID--DAFLRRLEKRIYVPL 52 (133)
Q Consensus 26 vi~aTn-~~~~lD--~al~rRfd~~i~i~~ 52 (133)
+|.||| .|..+. +.+.+|+..-..+.+
T Consensus 118 iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp EEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred EEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 444666 455443 888889887666654
No 114
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=25.71 E-value=97 Score=22.79 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=57.8
Q ss_pred CCCCCCHHHHhccccEEE----------cCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcC--CCCHHHHHHHHHHH
Q psy15623 32 FPWNIDDAFLRRLEKRIY----------VPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLE--GNAVQQKVMKSYTK 99 (133)
Q Consensus 32 ~~~~lD~al~rRfd~~i~----------i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~--G~sgadi~~~~~~~ 99 (133)
.-|+|+.|+-.-|+..-. -+.++.+.-..++..|- -...+..+.+.+.++ |+++.|+..++.+-
T Consensus 40 ~~WdLe~Al~~ff~~~~~~~~~~~~~~~~~~~~~~~l~~lF~~Y~----~~d~I~~dG~~~~~~DLgv~ped~~~Lvla~ 115 (270)
T 3bq3_A 40 NHWNINYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVFEHYI----NNNLFDIDSLVKFIEELGYNLEDLATLCLAH 115 (270)
T ss_dssp TTTCHHHHHHHHHHHHCC--------CCCCCSSCHHHHHHHHHHC----BTTBCCHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCccccccccccccccccccHHHHHHHHHHhc----CCCccCHhhHHHHHHHcCCChhhHHHHHHHH
Confidence 347788887765543211 12345566677777775 123456666666663 89999998887777
Q ss_pred HHHhcCC-CCCCHHHHHHHHHhh
Q psy15623 100 KTFCGKN-STPSQPKLLQAERPF 121 (133)
Q Consensus 100 ~~~~~~~-~~i~~~dl~~a~~~~ 121 (133)
...+..- ..++.+++..++...
T Consensus 116 ~l~a~~~~g~ftr~ef~~G~~~l 138 (270)
T 3bq3_A 116 LLGYKKLEEPLKREDFLSTWFMQ 138 (270)
T ss_dssp HTTCSCTTSCCCHHHHHHHHHHT
T ss_pred HcCCCccCceeeHHHHHHHHHHh
Confidence 7777777 889999999987643
No 115
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=24.88 E-value=18 Score=23.71 Aligned_cols=23 Identities=9% Similarity=0.391 Sum_probs=18.2
Q ss_pred ccccEEEcCCCCHHHHHHHHHHH
Q psy15623 43 RLEKRIYVPLPSSSGRQELLRLI 65 (133)
Q Consensus 43 Rfd~~i~i~~P~~~~R~~il~~~ 65 (133)
-|+..|.++.|+.|-|.++.+..
T Consensus 33 ~~~~~IRl~iPTEERRkeLvK~a 55 (123)
T 3lhp_S 33 KFKAAVRKVFPTEERIKDWLKIV 55 (123)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHH
T ss_pred cCCCeEEeeCCCHHHHHHHHHHH
Confidence 47788999999888888777655
No 116
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=24.84 E-value=1.1e+02 Score=18.05 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred hhcHHHHHHHcCCCCHHHHHHHH------HHHHHHhcCCCCCCHHHHHHHHHhhhhccc
Q psy15623 74 DLDLELVSDQLEGNAVQQKVMKS------YTKKTFCGKNSTPSQPKLLQAERPFRRSRV 126 (133)
Q Consensus 74 ~~~~~~la~~t~G~sgadi~~~~------~~~~~~~~~~~~i~~~dl~~a~~~~~~s~~ 126 (133)
..||..||+.. ||+..+|.... .........+..-+...+..+++++.+..+
T Consensus 21 g~dW~~LA~~L-g~~~~~I~~~~~~~~pt~~lL~~W~~r~~atv~~L~~aL~~igR~Dv 78 (85)
T 1ngr_A 21 GDTWRHLAGEL-GYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADI 78 (85)
T ss_dssp TTHHHHHHHHT-TCCHHHHHHHHHSSCHHHHHHHHGGGSTTCBHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHc-CCCHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHcCcHHH
Confidence 56899999986 69999986432 111112222234788999999988776544
No 117
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=24.41 E-value=30 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-hhhhcccccccCCC
Q psy15623 85 EGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER-PFRRSRVLLFTGYY 133 (133)
Q Consensus 85 ~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~-~~~~s~~~~~~~~~ 133 (133)
.||++.+++.+... -....+..+++.+++..-++ ....+++.+..+||
T Consensus 100 ~Gf~~~eia~ls~n-lkIeLNASti~~~~l~~l~~~~~n~~~l~a~HNFY 148 (372)
T 2p0o_A 100 YGITIEQMAHASHK-IDIGLNASTITLEEVAELKAHQADFSRLEAWHNYY 148 (372)
T ss_dssp SSCCHHHHHHHHTT-SEEEEETTTCCHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred CCCCHHHHHHHhcC-CEEEEECccCCHHHHHHHHHcCCChHHeEEeeccC
Confidence 69999999755433 22446777788888877765 44557788999998
No 118
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.20 E-value=13 Score=34.47 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.6
Q ss_pred CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC
Q psy15623 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFP 33 (133)
Q Consensus 1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~ 33 (133)
+++++|++||++.... +|+|| +||+.
T Consensus 1193 ~~~q~l~~~~~~~~~~------~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1193 MMSQAMRKLAGNLKQS------NTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHHHHHHHHHHHT------TCEEE-EEECE
T ss_pred HHHHHHHHHHhhhccC------CeEEE-Eeccc
Confidence 3789999999977665 78888 77773
No 119
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=21.47 E-value=68 Score=19.07 Aligned_cols=31 Identities=16% Similarity=0.025 Sum_probs=21.8
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhhhhccccccc
Q psy15623 99 KKTFCGKNSTPSQPKLLQAERPFRRSRVLLFT 130 (133)
Q Consensus 99 ~~~~~~~~~~i~~~dl~~a~~~~~~s~~~~~~ 130 (133)
.-+...++.+++.+|+..|++.. .....+|.
T Consensus 53 ~~a~ha~RKTvt~~DV~~Alk~~-g~~lYgf~ 83 (84)
T 2hue_C 53 TYTEHAKRKTVTAMDVVYALKRQ-GRTLYGFG 83 (84)
T ss_dssp HHHHHTTCSEECHHHHHHHTTTT-CEEEESCC
T ss_pred HHHHHcCCCcCcHHHHHHHHHHc-CCCCCCCC
Confidence 33445788899999999998855 34555553
No 120
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=20.92 E-value=1.2e+02 Score=18.81 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=21.8
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhhhhccccccc
Q psy15623 99 KKTFCGKNSTPSQPKLLQAERPFRRSRVLLFT 130 (133)
Q Consensus 99 ~~~~~~~~~~i~~~dl~~a~~~~~~s~~~~~~ 130 (133)
.-+....+.+++.+|+..|++... ..+.+|.
T Consensus 71 ~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~ 101 (102)
T 1id3_B 71 TYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 101 (102)
T ss_dssp HHHHHTTCSEECHHHHHHHHHHTT-CCEESSC
T ss_pred HHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCC
Confidence 334457888999999999998653 3455543
No 121
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=20.31 E-value=94 Score=19.18 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHhcCCCCCCHHHHHHHHHhhhhccccccc
Q psy15623 101 TFCGKNSTPSQPKLLQAERPFRRSRVLLFT 130 (133)
Q Consensus 101 ~~~~~~~~i~~~dl~~a~~~~~~s~~~~~~ 130 (133)
+....+.+++.+|+..|++... ....+|.
T Consensus 74 a~hakRktIt~~DV~~Alr~~g-~~lYGf~ 102 (103)
T 1tzy_D 74 TEHAKRKTVTAMDVVYALKRQG-RTLYGFG 102 (103)
T ss_dssp HHHTTCSEECHHHHHHHHHHTT-CEEESCC
T ss_pred HHHcCCCcCCHHHHHHHHHHcC-CCCcCCC
Confidence 3446788999999999998663 3455554
Done!