RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15623
(133 letters)
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 67.2 bits (164), Expect = 4e-14
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 10/90 (11%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
+ +LL +DGI + + ++++ A+N P ++D A LR R ++ IYVPLP R
Sbjct: 362 VVGQLLTELDGI------EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415
Query: 59 QELLRLILRQVD--LASDLDLELVSDQLEG 86
E+ ++ LR LA D+DLE +++ EG
Sbjct: 416 LEIFKIHLRDKKPPLAEDVDLEELAEITEG 445
Score = 42.1 bits (99), Expect = 2e-05
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
+ ++LL MDG+ ++++GA+N P +D A R R ++ I V LP +GR
Sbjct: 103 VVAQLLALMDGLKR-------GQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155
Query: 59 QELLRLILRQVDLASDLDLELVSDQLEGN--------AVQQKVMKSYTKKTFCGKNSTPS 110
E+L++ R + L + ++ + G A + + + G+ +
Sbjct: 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVT 215
Query: 111 QPKLLQAERPFRRSRVLLFTG 131
+ +A + SR +LF
Sbjct: 216 EDDFEEALKKVLPSRGVLFED 236
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 61.1 bits (148), Expect = 6e-12
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDGI ++V++ A+N P +D A LR R ++ I VP P R+E
Sbjct: 576 NQLLTEMDGI------QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKE 629
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+ ++ R + LA D+DLE +++ EG
Sbjct: 630 IFKIHTRSMPLAEDVDLEELAEMTEG 655
Score = 47.6 bits (113), Expect = 3e-07
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ ++++GA+N P +D A R R ++ I + +P R+E
Sbjct: 300 AQLLTLMDGLKGRGR------VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKE 353
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L++ R + LA D+DL+ +++ G
Sbjct: 354 ILKVHTRNMPLAEDVDLDKLAEVTHG 379
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 59.2 bits (144), Expect = 2e-11
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
ELL +DG DP ++ ++ A+N P +D A LR R +++I PLP GR E+
Sbjct: 277 ELLNQLDGF------DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEI 330
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
L++ R+++LA D+DLEL++ EG
Sbjct: 331 LKIHTRKMNLADDVDLELLARLTEG 355
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 58.3 bits (141), Expect = 5e-11
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL +DG DP ++ ++ A+N P +D A LR R ++ I VPLP GR E+
Sbjct: 248 QLLAELDGF------DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEI 301
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
L++ R++ LA D+DLE ++ EG
Sbjct: 302 LKIHTRKMKLAEDVDLEAIAKMTEG 326
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 56.5 bits (137), Expect = 2e-10
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG + T ++++ A+N P +D A LR R ++++ V LP GR+E+
Sbjct: 180 QLLVEMDGFGTNTG------VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEI 233
Query: 62 LRLILRQVDLASDLDLELV 80
L++ + LA D+DL+ V
Sbjct: 234 LKVHAKNKKLAPDVDLKAV 252
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 52.5 bits (127), Expect = 6e-09
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
LL MDG DP ++ I+ A+N +D A LR R ++ I VPLP GR E+L
Sbjct: 258 LLAEMDGF------DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEIL 311
Query: 63 RLILRQVDLASDLDLELVSDQLEG 86
++ R+++LA D+DLE +++ EG
Sbjct: 312 KIHTRKMNLADDVDLEELAELTEG 335
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 48.9 bits (116), Expect = 1e-07
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG + + I+++ A+N P +D A LR R ++++ V LP GR++
Sbjct: 276 NQMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 329
Query: 61 LLRLILRQVDLASDLDLELVS 81
+L++ +R+V LA D+D +++
Sbjct: 330 ILKVHMRRVPLAPDIDAAIIA 350
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 47.3 bits (113), Expect = 4e-07
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG ++++ A+N P +D A LR R +++I V LP GR+++
Sbjct: 275 QLLVEMDGFGGNE------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQI 328
Query: 62 LRLILRQVDLASDLDLELVSDQLEGNA 88
L++ + LA D+DL+ ++ G +
Sbjct: 329 LKVHAKNKPLAEDVDLKKIARGTPGFS 355
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 45.4 bits (108), Expect = 2e-06
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG K ++++ A+N +D A LR R +++I V LP GR ++
Sbjct: 308 QLLTEMDGF------KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDI 361
Query: 62 LRLILRQVDLASDLDLELV 80
L++ R L+ D+ LEL+
Sbjct: 362 LKVHARNKKLSPDVSLELI 380
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 44.8 bits (106), Expect = 2e-06
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
ELL MDG TTN VI+ A+N +D A LR RL+++I PLP ++ +
Sbjct: 271 ELLNQMDGFDQTTNVK-----VIM-ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI 324
Query: 62 LRLILRQVDLASDLDLE 78
+ I +++L+ ++DLE
Sbjct: 325 FQTITSKMNLSEEVDLE 341
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 42.6 bits (101), Expect = 4e-06
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR-RLEKRIYVPL 52
++LL +DG S+ + ++++ A+N P +D A LR R ++ I PL
Sbjct: 85 VNQLLTELDGFTSSLS-----KVIVIAATNRPDKLDPALLRGRFDRIIEFPL 131
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 41.3 bits (97), Expect = 5e-05
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64
LL +DGI + +V + A+N P +D A R E+ I LP+ R E+L
Sbjct: 242 LLTELDGIKEN------EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEY 295
Query: 65 ILRQVDLASDLDLELV---SDQLEGNAVQQKVMK 95
++ L D DL + + + G +++KV+K
Sbjct: 296 YAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 33.1 bits (76), Expect = 0.031
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL +DG+ S N ++++GASN ID A LR RL+ +I + P + ++
Sbjct: 320 QLLAEIDGVESLDN------VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADI 373
Query: 62 L-RLILRQVDLASDLDLELVSDQLEGNAVQQKV 93
+ + + L DL + A+ Q+V
Sbjct: 374 FAKYLTDDLPLPEDLAAHDGDREATAAALIQRV 406
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 32.5 bits (74), Expect = 0.038
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 11 GIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVP 51
GI D VI+ A N W LE R+ +P
Sbjct: 69 GIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLP 109
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 32.4 bits (74), Expect = 0.052
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
ELL +DG S + VI+ A+N ++D A +R R++++I P P ++ +
Sbjct: 309 ELLNQLDGFDSRGDVK-----VIM-ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRI 362
Query: 62 LRLILRQVDLASDLDLE---LVSDQLEG 86
+ ++ LA D+DLE + D+L G
Sbjct: 363 FEIHTSKMTLAEDVDLEEFIMAKDELSG 390
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 28.8 bits (64), Expect = 0.72
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 7 CHMDG---IASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR 63
CH+DG I T A P + L + P I DA + E +++ + SG+ LL
Sbjct: 95 CHVDGHDAIQITIRAIPAEP-PKLSKLDLPAAIIDAIAPQ-EGIVFITGATGSGKSTLLA 152
Query: 64 LILRQVDLASDLD---------LELVSDQLE 85
I+R++ A D +E V D++E
Sbjct: 153 AIIRELAEAPDSHRKILTYEAPIEFVYDEIE 183
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 289
Score = 28.1 bits (63), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 5 LLCHMDGIASTTNA 18
LLCH+ GIA+ T A
Sbjct: 114 LLCHLSGIATATAA 127
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 28.2 bits (63), Expect = 1.4
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 32 FPWNIDDAFLRRL---EKRIYVPLPSSSGRQELLRLILRQVDLASDLD 76
+ + +YV L + ELL ++L + +DLD
Sbjct: 221 LLGEAANELPYWIPADRPIVYVSLGTVGNAVELLAIVL---EALADLD 265
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 28.2 bits (63), Expect = 1.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 35 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE 78
+ +A L R RIYV P S +E R+IL +V +LDLE
Sbjct: 171 PLPEALLDRFLLRIYVDYPDS---EEEERIILARVGGVDELDLE 211
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase.
Length = 300
Score = 27.1 bits (60), Expect = 2.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 70 DLASDLDLELVSDQLEGNAVQQKVMKSYTKKT 101
D+AS ++ QL+ + Q++ +K Y K
Sbjct: 90 DMASPQAVDTFCSQLDASPHQRETIKKYAKAI 121
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed.
Length = 179
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 69 VDLASDLDLELVSDQLEG 86
DL +LDLE V++ L
Sbjct: 10 TDLGQELDLEKVAEDLPN 27
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
MoeA/LysR substrate binding-domain-containing protein;
Provisional.
Length = 633
Score = 26.7 bits (60), Expect = 3.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 42 RRLEKRIYVPLPSSSGRQELLRLILRQVD 70
++ R+ + S GR+E + + L +V
Sbjct: 337 ATVKARLARRVRSELGREEFVPVSLGRVG 365
>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain
found in gelsolin, severin, villin, and related
proteins. Gelsolin repeats occur in gelsolin, severin,
villin, advillin, villidin, supervillin, flightless,
quail, fragmin, and other proteins, usually in several
copies. They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating
bundles of F-actin with uniform filament polarity,
which is most likely mediated by their extra villin
headpiece domain. Many family members have also adopted
functions in the nucleus, including the regulation of
transcription. Supervillin, gelsolin, and flightless I
are involved in intracellular signaling via nuclear
hormone receptors. The gelsolin-like domain is
distantly related to the actin depolymerizing domains
found in cofilin and similar proteins.
Length = 92
Score = 25.7 bits (57), Expect = 4.2
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 35 NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDL 75
N D F+ L IY S S R E + + LA +
Sbjct: 26 NSGDVFILDLGSTIYQWNGSKSNRFE----KAKAMQLAQGI 62
>gnl|CDD|217690 pfam03718, Glyco_hydro_49, Glycosyl hydrolase family 49. Family of
dextranase (EC 3.2.1.11) and isopullulanase (EC
3.2.1.57). Dextranase hydrolyses alpha-1,6-glycosidic
bonds in dextran polymers.
Length = 566
Score = 26.4 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 8 HMDGIASTTNADPTKSIVILGASNF 32
H D + S T AD K+I + SN
Sbjct: 444 HYDDMGSGTTADSNKTIRNMTVSNV 468
>gnl|CDD|217684 pfam03710, GlnE, Glutamate-ammonia ligase adenylyltransferase.
Conserved repeated domain found in GlnE proteins. These
proteins adenylate and deadenylate glutamine synthases:
ATP + {L-Glutamate:ammonia ligase (ADP-forming)} =
Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase
(ADP-forming)}. The family is related to the pfam01909
domain.
Length = 251
Score = 26.1 bits (58), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 58 RQELLRLILRQVDLASDLDLELVSDQL 84
R++LLR+ DL L +E VS L
Sbjct: 69 RRQLLRIAAA--DLLGLLTVEKVSRHL 93
>gnl|CDD|226019 COG3488, COG3488, Predicted thiol oxidoreductase [Energy
production and conversion].
Length = 481
Score = 26.4 bits (58), Expect = 6.3
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFP------WNIDDAFLRRLEKRIYVPLPS 54
+K E HM G A+TT + ++ ++N P +++ +A R+ +V PS
Sbjct: 27 LKPEPFEHMSGGATTTTKEVGRNAFSQPSANLPFERRLDFSLGNALFRKP----WVSSPS 82
Query: 55 SS 56
S+
Sbjct: 83 ST 84
>gnl|CDD|176559 cd08622, PI-PLCXDc_CG14945_like, Catalytic domain of Drosophila
melanogaster CG14945-like proteins similar to
phosphatidylinositol-specific phospholipase C, X domain
containing. This subfamily corresponds to the catalytic
domain present in uncharacterized metazoan Drosophila
melanogaster CG14945-like proteins, which are similar to
eukaryotic phosphatidylinositol-specific phospholipase
C, X domain containing proteins (PI-PLCXD). The typical
eukaryotic phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11) has a multidomain organization
that consists of a PLC catalytic core domain, and
various regulatory domains. The catalytic core domain is
assembled from two highly conserved X- and Y-regions
split by a divergent linker sequence. In contrast,
eukaryotic PI-PLCXDs contain a single TIM-barrel type
catalytic domain, X domain, and are more closely related
to bacterial PI-PLCs, which participate in
Ca2+-independent PI metabolism, hydrolyzing the membrane
lipid phosphatidylinositol (PI) to produce
phosphorylated myo-inositol and diacylglycerol (DAG).
Although the biological function of eukaryotic PI-PLCXDs
still remains unclear, it may distinct from that of
typical eukaryotic PI-PLCs.
Length = 276
Score = 26.1 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE 118
Q GN +KSY +K + + P L AE
Sbjct: 178 QKWGNVQTLDDLKSYLRKLISQPHRFTNPPVSLMAE 213
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide
bond formation, this elongation factor of bacteria and
organelles catalyzes the translocation of the tRNA-mRNA
complex, with its attached nascent polypeptide chain,
from the A-site to the P-site of the ribosome. Every
completed bacterial genome has at least one copy, but
some species have additional EF-G-like proteins. The
closest homolog to canonical (e.g. E. coli) EF-G in the
spirochetes clusters as if it is derived from
mitochondrial forms, while a more distant second copy is
also present. Synechocystis PCC6803 has a few proteins
more closely related to EF-G than to any other
characterized protein. Two of these resemble E. coli
EF-G more closely than does the best match from the
spirochetes; it may be that both function as authentic
EF-G [Protein synthesis, Translation factors].
Length = 689
Score = 26.3 bits (58), Expect = 6.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 34 WNIDDAFLRRLEKRIYVPLPSSSGRQ-ELLRLILRQVDLASDLDLELVSDQLEGNAVQQK 92
+N D K I +PS Q + LR L V+ ++ D EL+ LEG + +
Sbjct: 186 FNGDKG-----TKAIEKEIPSDLLEQAKELRENL--VEAVAEFDEELMEKYLEGEELTIE 238
Query: 93 VMKSYTKK 100
+K+ +K
Sbjct: 239 EIKNAIRK 246
>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel. Two members
of this protein family from M. jannaschii have been
functionally characterized. Both proteins form
mechanosensitive (MS) ion channels upon reconstitution
into liposomes and functional examination by the
patch-clamp technique. Therefore this family are likely
to also be MS channel proteins.
Length = 202
Score = 25.6 bits (57), Expect = 8.5
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 11 GIASTTNADPTKSIVI-----LGASNFP-WNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64
GI STT +V + SN + RR+E I V S + E +
Sbjct: 78 GIRSTTIRTFDGRLVTIPNSKILTSNIINLSRSPT--RRVEVSIGVAYSSDPKKLEKVIE 135
Query: 65 ILRQV 69
IL++
Sbjct: 136 ILKEA 140
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 25.7 bits (57), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 52 LPSSSGRQELLRLILRQ-VDLASDLDLEL 79
+PS+ GR +LR ILR+ V A L L+
Sbjct: 291 VPSNEGRGYVLRRILRRAVRHAKKLGLKE 319
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 25.7 bits (57), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 52 LPSSSGRQELLRLILR 67
LPS+ GR +LR I+R
Sbjct: 295 LPSNEGRGYVLRRIIR 310
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 25.6 bits (56), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 24 IVILGASNFPWN--IDDAFLRRLEKRIYVPL 52
+ ++GA+N P +D A RL+ RI +PL
Sbjct: 121 VRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
>gnl|CDD|218753 pfam05794, Tcp11, T-complex protein 11. This family consists of
several eukaryotic T-complex protein 11 (Tcp11) related
sequences. Tcp11 is only expressed in fertile adult
mammalian testes and is thought to be important in
sperm function and fertility. The family also contains
the yeast Sok1 protein which is known to suppress
cyclic AMP-dependent protein kinase mutants.
Length = 431
Score = 25.7 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 58 RQELLRLILRQVDLA----SDLDLELVSDQLEGNAV 89
+ LL L+L L LDL+L+ Q E A+
Sbjct: 62 KDILLSLLLGPNRLRQEINEVLDLDLLRQQAEHGAL 97
>gnl|CDD|218090 pfam04450, BSP, Peptidase of plants and bacteria. These basic
secretory proteins (BSPs) are believed to be part of
the plants defence mechanism against pathogens.
Length = 203
Score = 25.3 bits (56), Expect = 9.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 9 MDGIASTTNADPTKSIV 25
+DG+A T+ D K I
Sbjct: 61 IDGVAYTSGDDDHKEIH 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0834 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,667,356
Number of extensions: 587117
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 50
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)