RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15623
(133 letters)
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 104 bits (262), Expect = 1e-28
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L DG+ + D IV+L A+N P +D+A LRR KR+YV LP R+
Sbjct: 140 LKTEFLVEFDGLPGNPDGD---RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTREL 196
Query: 61 LLRLILRQVDLA-SDLDLELVSDQLEG 86
LL +L++ L ++ +G
Sbjct: 197 LLNRLLQKQGSPLDTEALRRLAKITDG 223
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 102 bits (257), Expect = 2e-27
Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L +DG + I+++GA+N P ID+A RRL KR+Y+PLP +S R++
Sbjct: 203 IKTEFLVQLDGATT----SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258
Query: 61 LLRLIL-RQVDLASDLDLELVSDQLEG 86
++ ++ ++ S+ ++E + Q +
Sbjct: 259 IVINLMSKEQCCLSEEEIEQIVQQSDA 285
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 101 bits (254), Expect = 3e-27
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ I++LGA+N PW +D A RR EKRIY+PLP R
Sbjct: 132 IKTEFLVQMQGVGVDN-----DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 186
Query: 61 LLRLILRQVDLA-SDLDLELVSDQLEG 86
+ +L L + ++ D + + +G
Sbjct: 187 MFKLHLGTTQNSLTEADFRELGRKTDG 213
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 102 bits (256), Expect = 4e-27
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L DG+ S ++++GA+N P +D+A LRR KR+YV LP+ R
Sbjct: 234 LKTEFLIEFDGVQS----AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289
Query: 61 LLRLILRQVD-LASDLDLELVSDQLEG 86
LL+ +L + + +L ++ +G
Sbjct: 290 LLKNLLCKQGSPLTQKELAQLARMTDG 316
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 101 bits (253), Expect = 4e-27
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + ++ +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 137 IKTELLVQMNGVGN-----DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191
Query: 61 LLRLILRQV-DLASDLDLELVSDQLEG 86
+ + + + + D + EG
Sbjct: 192 MFEINVGDTPCVLTKEDYRTLGAMTEG 218
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 100 bits (250), Expect = 2e-26
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+ELL M+G+ + ++ +++LGA+N PW +D A RR E+RIY+PLP + R
Sbjct: 170 IKTELLVQMNGVGN-----DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 224
Query: 61 LLRLILRQV-DLASDLDLELVSDQLEG 86
+ + + + + D + EG
Sbjct: 225 MFEINVGDTPSVLTKEDYRTLGAMTEG 251
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 99.3 bits (247), Expect = 8e-26
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
+K+E L M G+ I++LGA+N PW +D A RR EKRIY+PLP + R
Sbjct: 254 IKTEFLVQMQGVGVDN-----DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308
Query: 61 LLRLILRQVDLA-SDLDLELVSDQLEG 86
+ RL L + ++ D + + + +G
Sbjct: 309 MFRLHLGSTQNSLTEADFQELGRKTDG 335
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 82.1 bits (203), Expect = 2e-19
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG+ K++ I+GA+N P ID A LR RL++ IY+PLP R
Sbjct: 602 NQILTEMDGM------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ +A D+DLE ++ G
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNG 681
Score = 64.8 bits (158), Expect = 2e-13
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ + ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L++ + + LA D+DLE V+++ G
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHG 405
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 77.7 bits (192), Expect = 2e-18
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
+++L MDG+ K++ I+GA+N P ID A LR RL++ IY+PLP R
Sbjct: 140 NQILTEMDGM------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L+ LR+ +A D+DLE ++ G
Sbjct: 194 ILKANLRKSPVAKDVDLEFLAKMTNG 219
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 68.4 bits (168), Expect = 5e-15
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
++LL MDG+ + + + I+ A+N P ID A LR RL+K ++V LP + R
Sbjct: 132 NQLLTEMDGL------EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185
Query: 61 LLRLILRQVD---LASDLDLELVSDQL 84
+L+ I + L +D++LE ++ L
Sbjct: 186 ILKTITKNGTKPPLDADVNLEAIAGDL 212
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 65.4 bits (160), Expect = 5e-14
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG D + I+GA+N P +D A LR R ++ I VP P GR E+
Sbjct: 143 QLLAEMDGF------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEI 196
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
L++ R+++LA D++LE ++ EG
Sbjct: 197 LKIHTRKMNLAEDVNLEEIAKMTEG 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 64.8 bits (158), Expect = 2e-13
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
S+LL MDG+ ++++ A+N P +ID A R R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGL------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61 LLRLILRQVDLASDLDLELVSDQLEG 86
+L++ + + LA D+DLE V+++ G
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHG 405
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 55.0 bits (133), Expect = 3e-10
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
++L MDG + + I+++ A+N P +D A LR R ++++ V LP GR+++
Sbjct: 137 QMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 190
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
L++ +R+V LA D+D +++ G
Sbjct: 191 LKVHMRRVPLAPDIDAAIIARGTPG 215
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 54.6 bits (132), Expect = 5e-10
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG S +++L A+N P +D A +R R ++++ V P +GR E+
Sbjct: 137 QLLAEMDGFGS-----ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEI 191
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
L++ ++ V LA+D++L+ V+ G
Sbjct: 192 LKVHIKGVKLANDVNLQEVAKLTAG 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 54.3 bits (131), Expect = 5e-10
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG + +IV++ A+N P +D A LR R +++I + P GR+++
Sbjct: 141 QLLVEMDGF------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
LR+ R LA D+DL L++ + G
Sbjct: 195 LRIHARGKPLAEDVDLALLAKRTPG 219
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 54.2 bits (131), Expect = 5e-10
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
LL MDG+ +T + +++L ++N +D A +R RL++ +++ LP+ R+E+
Sbjct: 133 LLVEMDGMGTTDH------VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIF 186
Query: 63 RLILRQVDLASDLDL 77
L+ + L
Sbjct: 187 EQHLKSLKLTQSSTF 201
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 54.3 bits (131), Expect = 6e-10
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
+LL MDG + +IV++ A+N P +D A LR R +++I + P GR+++
Sbjct: 165 QLLVEMDGF------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
Query: 62 LRLILRQVDLASDLDLELVSDQLEG 86
LR+ R LA D+DL L++ + G
Sbjct: 219 LRIHARGKPLAEDVDLALLAKRTPG 243
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 50.3 bits (121), Expect = 2e-08
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
LL MDG T IV++ A+N P +D A LR R +++I + P GR+++L
Sbjct: 157 LLVEMDGFEKDTA------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 210
Query: 63 RLILRQVDLASDLDLELV 80
R+ R LA D+DL L+
Sbjct: 211 RIHARGKPLAEDVDLALL 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 49.9 bits (120), Expect = 3e-08
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 5 LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
LL MDG S I+++ A+N P +D A LR R +K+I V P GR+++L
Sbjct: 142 LLVEMDGFDSKEG------IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL 195
Query: 63 RLILRQVDLASDLDLELV 80
+ R LA D++LE++
Sbjct: 196 EIHTRNKPLAEDVNLEII 213
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 48.7 bits (116), Expect = 7e-08
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 9 MDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLIL 66
+ G+ N + I+ N + +R R+EK + P R + I
Sbjct: 144 LPGM---YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR--EDRIGVCTGIF 198
Query: 67 RQVDLASDLDLELVSDQLEG 86
R ++ E V ++
Sbjct: 199 R----TDNVPAEDVVKIVDN 214
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 36.7 bits (86), Expect = 2e-04
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 48 IYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 86
+ P+ R ++L++ R+++L ++L +++ + G
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.009
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 34/141 (24%)
Query: 4 ELLCHMD-GI--ASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
++ C MD I + N + ++++ + + ID + R + + L S + E
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 61 LLR-----------LILRQV---DLASDLDLE---L-------VSDQLEGNAVQQKVMKS 96
L R L+L V + +L L V+D L +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 97 YTKKTFCGKNSTPSQPKLLQA 117
+ T TP + K L
Sbjct: 294 H-SMTL-----TPDEVKSLLL 308
Score = 30.6 bits (68), Expect = 0.14
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 31/102 (30%)
Query: 20 PTKSIVILGASNFPWN-----IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLAS- 73
PT + ++ W + +L K L+ +Q ++
Sbjct: 388 PTILLSLI------WFDVIKSDVMVVVNKLHKY---------------SLVEKQPKESTI 426
Query: 74 ---DLDLELVSDQLEGNAVQQKVMKSY-TKKTFCGKNSTPSQ 111
+ LEL A+ + ++ Y KTF + P
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Score = 30.2 bits (67), Expect = 0.20
Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 23/108 (21%)
Query: 22 KSIVILGASNFPWNIDDAFLRRLEKRIY-VPLPSSSGRQELLRLILRQVDLASDLDLELV 80
K+ V L +++ +I+ + + +L L+ +
Sbjct: 163 KTWVALDVCL-----SYKVQCKMDFKIFWL----NLKNCNSPETVLEM--------LQKL 205
Query: 81 SDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLL 128
Q++ N + ++ +S ++ + L +P+ LL
Sbjct: 206 LYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENC--LL 248
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 29.8 bits (68), Expect = 0.074
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 51 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 86
P P+ R ++L++ R+++L ++L +++ + G
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 36
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 27.6 bits (62), Expect = 1.2
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 11 GIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVP 51
G+ + + D K V+ GA N W ++E + +P
Sbjct: 72 GMGTPGSVDIEKGTVV-GAYNLNWTTVQPVKEQIESALGIP 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.3
Identities = 4/18 (22%), Positives = 9/18 (50%), Gaps = 4/18 (22%)
Query: 41 LRRLEKRI--YVP--LPS 54
L++L+ + Y P+
Sbjct: 22 LKKLQASLKLYADDSAPA 39
>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A
{Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*
Length = 301
Score = 26.7 bits (59), Expect = 2.2
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 63 RLILRQVDLASDLD--LELVSD 82
RL L +D A+D D
Sbjct: 16 RLELTPLDPAADARHLHHAYGD 37
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein,
bacillu structural genomics, PSI, protein structure
initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9
a.121.1.1
Length = 192
Score = 26.1 bits (58), Expect = 3.1
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 37 DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD---LASDLDLELVSDQLEG 86
D R + P R + +L+ + + L +LD+EL D + G
Sbjct: 113 DSKLAEEYRVRYFQP-----RRLQAKQLLEKGIKRGELKENLDIELSIDLIYG 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 3.2
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 53 PSS---SGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKV 93
P S QE L+ ++ +V + +E+V+ +E QQ V
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN---QQYV 1854
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR
family, helix-turn-helix, DNA- binding, transcription
regulation; 2.25A {Streptomyces coelicolor}
Length = 214
Score = 26.1 bits (58), Expect = 3.9
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 37 DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD---LASDLDLELVSDQLEG 86
D + R + + + D+D++++ DQL G
Sbjct: 125 DADLATAYRQLYSAQ-----RRALAAERLRHARELGQIRPDVDVQVLVDQLWG 172
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat,
chaperone, chaperone-protein binding complex; HET: DNA;
3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 24.9 bits (55), Expect = 4.8
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 57 GRQELLRLILRQVDLASDLDLELVSDQLEG 86
GR + R+ + + + + EL+S
Sbjct: 5 GRANIFRIHSKSMSVERGIRWELISRLCPN 34
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 26.0 bits (57), Expect = 4.9
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 39 AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA 72
AFL +Y+ S + +R+ + +
Sbjct: 232 AFLDAGPPPVYLGFGSLGAPADAVRVAIDAIRAH 265
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA
polymerase beta motif; 2.00A {Escherichia coli} SCOP:
a.24.16.4 d.218.1.9
Length = 440
Score = 25.6 bits (56), Expect = 6.6
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 58 RQELLRLILRQVDLASDLDLELVSDQL 84
R+ ++R+ + + E + QL
Sbjct: 95 RRIMVRIAWA--QTLALVTEESILQQL 119
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 25.7 bits (57), Expect = 6.7
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 52 LPSSSGRQELLRLILR 67
+PS++G L RL++R
Sbjct: 356 VPSNAGAGYLARLMIR 371
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 25.2 bits (56), Expect = 7.1
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 5 LLCHMDGIASTTNA 18
+ H GIAS T
Sbjct: 122 FIQHASGIASITRQ 135
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 25.1 bits (56), Expect = 7.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LLCHMDGIASTTNA 18
LL + GIA+ T A
Sbjct: 110 LLQRLSGIATLTRA 123
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 25.1 bits (56), Expect = 7.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 5 LLCHMDGIASTTNA 18
L+ H+ GIA+ T A
Sbjct: 109 LVGHLSGIATATAA 122
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 25.1 bits (56), Expect = 7.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LLCHMDGIASTTNA 18
LL H GIA+ T+
Sbjct: 96 LLQHSSGIATLTSR 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,934,230
Number of extensions: 104277
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 52
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)