RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15623
         (133 letters)



>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 80.7 bits (199), Expect = 3e-20
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
             ++LL  MDG    T       IV++ A+N P  +D A LR  R +++I +  P   GR
Sbjct: 131 TLNQLLVEMDGFEKDTA------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 184

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEG 86
           +++LR+  R   LA D+DL L++ +  G
Sbjct: 185 EQILRIHARGKPLAEDVDLALLAKRTPG 212


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 76.8 bits (189), Expect = 1e-18
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
             +++L  MDG            I+++ A+N P  +D A LR  R ++++ V LP   GR
Sbjct: 134 TLNQMLVEMDGFEGNEG------IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEG 86
           +++L++ +R+V LA D+D  +++    G
Sbjct: 188 EQILKVHMRRVPLAPDIDAAIIARGTPG 215


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 53.3 bits (127), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 8/88 (9%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
           + +++L  MDG+++  N      + I+GA+N P  ID A LR  RL++ IY+PLP    R
Sbjct: 130 VINQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 183

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEG 86
             +L+  LR+  +A D+DLE ++    G
Sbjct: 184 VAILKANLRKSPVAKDVDLEFLAKMTNG 211


>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 24  IVILGASNFPWNIDDAFLR-RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82
           ++I+G ++    + +  +       I+VP    +  ++LL   L  +    D +   ++ 
Sbjct: 144 LLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI--ATGEQLLE-ALELLGNFKDKERTTIAQ 200

Query: 83  QLEG 86
           Q++G
Sbjct: 201 QVKG 204


>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 139

 Score = 26.5 bits (58), Expect = 0.88
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 20 PTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLP 53
            K I ++GAS  P    +  ++ L +  Y   P
Sbjct: 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYP 51


>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 116

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLP 53
          + I ++GAS  P    +  L+ L  + +  LP
Sbjct: 2  RKIALVGASKNPAKYGNIILKDLLSKGFEVLP 33


>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus
          thermophilus [TaxId: 274]}
          Length = 136

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 21 TKSIVILGASNFPWNIDDAFLRRL 44
           K+I +LGA   P        R L
Sbjct: 13 AKTIAVLGAHKDPSRPAHYVPRYL 36


>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA,
          N-terminal domain {Pyrococcus horikoshii [TaxId:
          53953]}
          Length = 129

 Score = 23.8 bits (51), Expect = 5.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 22 KSIVILGASNFPWNIDDAFLRRL 44
          K I ++GASN P  +     + L
Sbjct: 9  KGIAVIGASNDPKKLGYEVFKNL 31


>d1uz5a1 b.85.6.1 (A:329-402) Molybdenum cofactor biosynthesis
          protein MoeA, C-terminal domain {Archaeon Pyrococcus
          horikoshii, PH0582 [TaxId: 53953]}
          Length = 74

 Score = 23.2 bits (50), Expect = 6.6
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 41 LRRLEKRIYVPLPSSSGRQELLRLILR 67
          + +   R+   + S  GR++ L + L 
Sbjct: 1  IGKKVARLKHKVFSVKGRRQFLPVKLE 27


>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 22.8 bits (49), Expect = 8.5
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 22 KSIVILGASNFPWNIDDAFLRR 43
          +     G    P  + D+FL R
Sbjct: 9  RRAREAGVPLAPLPLTDSFLLR 30


>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 95

 Score = 23.1 bits (50), Expect = 9.4
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 37 DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD 70
            + ++ + +  +  +  +S   E  RLI+   +
Sbjct: 46 QSSRIKLITEEEFKQICFNSSSPERDRLIIVPKE 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,191
Number of extensions: 19272
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 14
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)