BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15625
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 294 bits (752), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 19 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 79 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 138
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
LVG S LR
Sbjct: 139 LVGNKSDLR--------------------------------------------------- 147
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/221 (70%), Positives = 159/221 (71%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 19 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
KAQIWDTAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 79 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 138
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
LVG S LR
Sbjct: 139 LVGNKSDLR--------------------------------------------------- 147
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/221 (69%), Positives = 158/221 (71%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
KAQIWDTAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVI
Sbjct: 61 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIX 120
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
LVG S LR
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 283 bits (723), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 154/216 (71%), Gaps = 51/216 (23%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVG
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
S LR HLRAV
Sbjct: 123 SDLR---------------------------------------------------HLRAV 131
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
P DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 132 PTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 167
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/214 (70%), Positives = 153/214 (71%), Gaps = 51/214 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVG S
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
LR HLRAVP
Sbjct: 137 LR---------------------------------------------------HLRAVPT 145
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 146 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 179
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/214 (70%), Positives = 154/214 (71%), Gaps = 51/214 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQERYR ITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVG S
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
LR HLRAVP
Sbjct: 122 LR---------------------------------------------------HLRAVPT 130
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/215 (69%), Positives = 152/215 (70%), Gaps = 51/215 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVI LVG S
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
LR HLRAVP
Sbjct: 121 DLR---------------------------------------------------HLRAVP 129
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 164
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 145/216 (67%), Gaps = 52/216 (24%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQI 64
D YDYLFK+VLIGDSGVGKSNLLSRFTR+EFNLESKSTIGVEFAT+SIQ+ + K IKAQI
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQERYRAITSAYYRGAVGALLVYDI K ++EN+E+WL+ELRD+AD NIVI+LVG
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
S DL+HLR
Sbjct: 122 KS---------------------------------------------------DLKHLRV 130
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ ++A +A++ L+FIETSAL++TNVE AF +L
Sbjct: 131 INDNDATQYAKKEKLAFIETSALEATNVELAFHQLL 166
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 142/214 (66%), Gaps = 51/214 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
+YD LFK+VLIGDSGVGKSNLLSRFT+NEFN++SKSTIGVEFATR+++++ K IKAQIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQERYRAITSAYYRGAVGAL+VYDI+K +YEN WL ELR++AD N+ + L+G
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG--- 125
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NKSDL HLRAVP
Sbjct: 126 ------------------------------------------------NKSDLAHLRAVP 137
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+E+KTFA+ N L F ETSAL+S NV+ AF+ ++
Sbjct: 138 TEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 138/216 (63%), Gaps = 51/216 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
+YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR+I+V+ K IKAQIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAG ERYRAITSAYYRGAVGAL+VYDI+K +YEN WL ELR++AD N+ + L+G S
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
DL HLRAVP
Sbjct: 126 ---------------------------------------------------DLAHLRAVP 134
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
DEAK FA N + F ETSAL+S NV+ AF+ ++ A
Sbjct: 135 TDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVA 170
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 219 bits (558), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 139/215 (64%), Gaps = 51/215 (23%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + +KAQIW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWL+EL DHA+ IV+MLVG
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG-- 137
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
NKSDL R V
Sbjct: 138 -------------------------------------------------NKSDLSQAREV 148
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
P +EA+ FAE N L F+ETSALDSTNVE AF+ +L
Sbjct: 149 PTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 216 bits (551), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 139/219 (63%), Gaps = 51/219 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G+ ++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + +K
Sbjct: 1 GSHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 60
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
AQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWL+EL DHA+ IV+ML
Sbjct: 61 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 120
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
VG S DL
Sbjct: 121 VGNKS---------------------------------------------------DLSQ 129
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
R VP +EA+ FAE N L F+ETSALDSTNVE AF+ +L
Sbjct: 130 AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 168
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A +N+ +LVG
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG--- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NKSDL + V
Sbjct: 122 ------------------------------------------------NKSDLTTKKVVD 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
AK FA+ + F+ETSA ++TNVE AF +
Sbjct: 134 NTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A +N+ +LVG
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG--- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NKSDL + V
Sbjct: 122 ------------------------------------------------NKSDLTTKKVVD 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
AK FA+ + F+ETSA ++TNVE AF +
Sbjct: 134 NTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 119/219 (54%), Gaps = 51/219 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
M + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTI
Sbjct: 6 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
LVG NK DL
Sbjct: 126 LVG---------------------------------------------------NKCDLT 134
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
+ V AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 111/211 (52%), Gaps = 51/211 (24%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +D K IK QIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL + R H++ N+VIML+G
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIG---- 122
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NKSDL R V
Sbjct: 123 -----------------------------------------------NKSDLESRREVKK 135
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQN 218
+E + FA + L F+ETSA ++NVE AF N
Sbjct: 136 EEGEAFAREHGLIFMETSAKTASNVEEAFIN 166
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 110/209 (52%), Gaps = 51/209 (24%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V + IK QIWDT
Sbjct: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+L+G
Sbjct: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG---- 127
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NK+DL R V
Sbjct: 128 -----------------------------------------------NKADLEAQRDVTY 140
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
+EAK FAE N L F+E SA NVE AF
Sbjct: 141 EEAKQFAEENGLLFLEASAKTGENVEDAF 169
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 111/216 (51%), Gaps = 51/216 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V + I
Sbjct: 20 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 79
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQ R+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 80 KLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 139
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
L+G NK+DL
Sbjct: 140 LIG---------------------------------------------------NKADLE 148
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAF 216
R V +EAK FAE N L F+E SA NVE AF
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 51/219 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
M + EYDYLFK++LIGDSGVGK+ LL RF + + STIGV+F R+I++D KTI
Sbjct: 6 MSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
LVG NK DL
Sbjct: 126 LVG---------------------------------------------------NKCDLT 134
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
+ V AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 117/213 (54%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 137
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NK DL + V
Sbjct: 138 ------------------------------------------------NKCDLTTKKVVD 149
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 150 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 118/210 (56%), Gaps = 51/210 (24%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIG+SGVGKS LL RF+ + + + STIGV+F +++++D KT+K QIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRG+ G ++VYD+ ++ V+ WL+E+ +A ++ +LVG
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
+L+D R V
Sbjct: 124 --------------------------------DLKDK-------------------RVVE 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAF 216
D AK FA+ N + F+ETSALDSTNVE AF
Sbjct: 133 YDVAKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 119/213 (55%), Gaps = 51/213 (23%)
Query: 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
R EYDYLFK++LIG+SGVGKS LL RF+ + + + STIGV+F +++++D KT+K Q
Sbjct: 14 RGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 73
Query: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
IWDTAGQER+R ITS+YYRG+ G ++VYD+ ++ V+ WL+E+ +A ++ +LVG
Sbjct: 74 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 133
Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
+L+D R
Sbjct: 134 NKC--------------------------------DLKDK-------------------R 142
Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAF 216
V D AK FA+ N + F+ETSALDSTNVE AF
Sbjct: 143 VVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 118/210 (56%), Gaps = 51/210 (24%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIG+SGVGKS LL RF+ + + + STIGV+F +++++D KT+K QIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRG+ G ++VYD+ ++ V+ WL+E+ +A ++ +LVG
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
+L+D R V
Sbjct: 124 --------------------------------DLKDK-------------------RVVE 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAF 216
D AK FA+ N + F+ETSALDSTNVE AF
Sbjct: 133 YDVAKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 117/213 (54%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 118
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NK DL + V
Sbjct: 119 ------------------------------------------------NKCDLTTKKVVD 130
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 131 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 51/210 (24%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG
Sbjct: 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 145
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NK DL + V
Sbjct: 146 ------------------------------------------------NKCDLTTKKVVD 157
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAF 216
AK FA+ + F+ETSA ++TNVE +F
Sbjct: 158 YTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I ++ KT+K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ +++NV++W++E+ +A +N+ +LVG
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG--- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NK DL R V
Sbjct: 122 ------------------------------------------------NKCDLVSKRVVT 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
+DE + A+ + + FIETSA ++ NVE AF +
Sbjct: 134 SDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 108/209 (51%), Gaps = 51/209 (24%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +D K IK QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
QE +R+IT +YYRGA GALLVYDI + T+ ++ WL + R H+ N+VIML+G
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG------ 133
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
NKSDL R V +E
Sbjct: 134 ---------------------------------------------NKSDLESRRDVKREE 148
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQN 218
+ FA + L F+ETSA + NVE AF N
Sbjct: 149 GEAFAREHGLIFMETSAKTACNVEEAFIN 177
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI-- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
K DL + V
Sbjct: 122 -------------------------------------------------KCDLTTKKVVD 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 133 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 51/213 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
EYD LFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 118
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NK DL + V
Sbjct: 119 ------------------------------------------------NKCDLTTKKVVD 130
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 131 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + V KT+K QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQER+R++T +YYRGA GALLVYDI TY ++ WL + R A NIV++L G
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG----- 137
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
NK DL R V
Sbjct: 138 ----------------------------------------------NKKDLDPEREVTFL 151
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
EA FA+ N L F+ETSAL NVE AF
Sbjct: 152 EASRFAQENELMFLETSALTGENVEEAF 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 109/215 (50%), Gaps = 51/215 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G + YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I V K +K
Sbjct: 1 GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
QIWDTAGQER+R++T +YYRGA GALLVYDI TY + WL + R A QNIVI+L
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
G NK DL
Sbjct: 121 CG---------------------------------------------------NKKDLDA 129
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAF 216
R V EA FA+ N L F+ETSAL NVE AF
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAF 164
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 118/221 (53%), Gaps = 52/221 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G +++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ K +K
Sbjct: 20 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 79
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
QIWDTAGQER+R IT +YYR A GA+L YDI K ++ +V W+ ++R +A NIV +L
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
+G NKSDL
Sbjct: 140 IG---------------------------------------------------NKSDLSE 148
Query: 182 LRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT 221
LR V EA++ AE + L IETSA DS+NVE AF + T
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 108/211 (51%), Gaps = 51/211 (24%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I V K +K QIW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAGQER+R++T +YYRGA GALLVYDI TY + WL + R A QNIVI+L G
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG-- 123
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
NK DL R V
Sbjct: 124 -------------------------------------------------NKKDLDADREV 134
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAF 216
EA FA+ N L F+ETSAL +VE AF
Sbjct: 135 TFLEASRFAQENELMFLETSALTGEDVEEAF 165
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 51/209 (24%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
YDYLFK++LIGDSGVGK+ +L RF+ + FN STIG++F R+I++D K IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQER+R IT+AYYRGA+G +LVYDI +++N+ W+R + +HA ++ M++G
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG---- 120
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NK D+ R V
Sbjct: 121 -----------------------------------------------NKCDVNDKRQVSK 133
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
+ + A + F+ETSA + NVE AF
Sbjct: 134 ERGEKLALDYGIKFMETSAKANINVENAF 162
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 110/208 (52%), Gaps = 51/208 (24%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
DYLFK++LIGDSGVGK+ +L RF+ + FN STIG++F R+I++D K IK QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQER+R IT+AYYRGA+G +LVYDI +++N+ W+R + +HA ++ M++G
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG----- 118
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
NK D+ R V +
Sbjct: 119 ----------------------------------------------NKCDVNDKRQVSKE 132
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
+ A + F+ETSA + NVE AF
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAF 160
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 107/211 (50%), Gaps = 51/211 (24%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I V K +K QIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAG ER+R++T +YYRGA GALLVYDI TY + WL + R A QNIVI+L G
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG-- 120
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
NK DL R V
Sbjct: 121 -------------------------------------------------NKKDLDADREV 131
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAF 216
EA FA+ N L F+ETSAL +VE AF
Sbjct: 132 TFLEASRFAQENELMFLETSALTGEDVEEAF 162
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 111/207 (53%), Gaps = 51/207 (24%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--------- 111
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
NK DL + V AK
Sbjct: 112 ------------------------------------------NKCDLTTKKVVDYTTAKE 129
Query: 193 FAERNNLSFIETSALDSTNVETAFQNI 219
FA+ + F+ETSA ++TNVE +F +
Sbjct: 130 FADSLGIPFLETSAKNATNVEQSFMTM 156
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 52/209 (24%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
YD + K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K Q+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQER+R IT+AYYRGA+G +LVYD+ T+ N+++W + + +HA+ ++LVG
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG---- 132
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NKSD+ R V A
Sbjct: 133 -----------------------------------------------NKSDM-ETRVVTA 144
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
D+ + A+ + FIE+SA + NV F
Sbjct: 145 DQGEALAKELGIPFIESSAKNDDNVNEIF 173
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 52/208 (25%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D + K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQER+R IT+AYYRGA+G +LVYDI T+ N+++W + + +HA+ ++LVG
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG----- 115
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
NKSD+ R V AD
Sbjct: 116 ----------------------------------------------NKSDM-ETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
+ + A+ + FIE+SA + NV F
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 52/208 (25%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D + K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQER+R IT+AYYRGA G +LVYDI T+ N+++W + + +HA+ ++LVG
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG----- 115
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
NKSD R V AD
Sbjct: 116 ----------------------------------------------NKSD-XETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
+ + A+ + FIE+SA + NV F
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 52/218 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G+ ED YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F ++++++ + +K
Sbjct: 18 GSMED-YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 76
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
QIWDTAGQER+R+IT +YYR A +L YDI ++ + WLRE+ +A ++ +L
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
VG NK DL
Sbjct: 137 VG---------------------------------------------------NKIDLAE 145
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
R V A+ F+E ++ ++ETSA +S NVE F ++
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 52/206 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+ K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER+R IT+AYYRGA+G +LVYD+ T+ N+++W + + +HA+ ++LVG
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG------- 119
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
NKSD+ R V AD+
Sbjct: 120 --------------------------------------------NKSDM-ETRVVTADQG 134
Query: 191 KTFAERNNLSFIETSALDSTNVETAF 216
+ A+ + FIE+SA + NV F
Sbjct: 135 EALAKELGIPFIESSAKNDDNVNEIF 160
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 52/208 (25%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D + K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQER+R IT+AYYRGA G +LVYD+ T+ N+++W + + +HA+ ++LVG
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG----- 115
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
NKSD R V AD
Sbjct: 116 ----------------------------------------------NKSD-XETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
+ + A+ + FIE+SA + NV F
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 52/213 (24%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
+YD+LFK+++IGDSGVGKS+LL RF N F+ +TIGV+F R+++++ + +K QIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R ITS YYRG G ++VYD+ ++ NV+RWL E+ + D ++ +LVG
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVG--- 120
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
NK+D + V
Sbjct: 121 ------------------------------------------------NKNDDPERKVVE 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
++A FA + + ETSA ++ NVE F I
Sbjct: 133 TEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 119
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 120 -------------------------------------------NKADLANKRAVDFQEAQ 136
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 137 SYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI T+ + W++EL+ A NIVI L G
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------- 115
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL RAV EA+
Sbjct: 116 -------------------------------------------NKADLASKRAVEFQEAQ 132
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+A+ N+L F+ETSA + NV F I
Sbjct: 133 AYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 51/207 (24%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+VL+GD G GKS+L+ RF +++F +STIG F ++++ V+ T+K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
Y ++ YYRGA A++V+D+ ++E ++W++EL+ + N+V+ L G
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG--------- 124
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
NKSDL R V A++A+T
Sbjct: 125 ------------------------------------------NKSDLLDARKVTAEDAQT 142
Query: 193 FAERNNLSFIETSALDSTNVETAFQNI 219
+A+ N L F+ETSA +TNV+ F I
Sbjct: 143 YAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 119
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 120 -------------------------------------------NKADLANKRAVDFQEAQ 136
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F ETSA S NV F I
Sbjct: 137 SYADDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
KV L+GD+GVGKS+++ RF ++ F+ TIG F T+++ + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+ SL Y
Sbjct: 84 RFH---------------------------------------------------SLAPMY 92
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
YRG+ A++VYDI K ++ +++W++EL++H +NIV+ + GNK DL +R VP +AK
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 152
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+AE +ETSA ++ N+E FQ I
Sbjct: 153 EYAESIGAIVVETSAKNAINIEELFQGI 180
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+S+ +D T+K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI T+ + W++EL+ A +IVI L G
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAG-------- 120
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + R V +EA+
Sbjct: 121 -------------------------------------------NKADLANKRMVEYEEAQ 137
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+A+ N+L F+ETSA + NV F I
Sbjct: 138 AYADDNSLLFMETSAKTAMNVNDLFLAI 165
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI ++ + W++EL+ A NIVI L G
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 117
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL + RAV EA+
Sbjct: 118 -------------------------------------------NKADLANKRAVDFQEAQ 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
++A+ N+L F+ETSA S NV F I
Sbjct: 135 SYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 84/115 (73%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73
++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTIK QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A +N+ +LVG L
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
KV L+GD+GVGKS+++ RF + F+ TIG F T+++Q + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+RA+ YYRG+ A++VYDI K T+ ++ W+RELR H GPPS
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----------GPPS----- 110
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
IV+ + GNK DL +R V +AK
Sbjct: 111 ------------------------------------IVVAIAGNKCDLTDVREVMERDAK 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+A+ + F+ETSA ++ N+ F I
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEI 162
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI T+ + W++EL+ A NIVI L G
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------- 117
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL RAV EA+
Sbjct: 118 -------------------------------------------NKADLASKRAVEFQEAQ 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+A+ N+L F+ETSA + NV F I
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STI F T+++ +D T+K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
RY ++ YYRGA A++VYDI T+ + W++EL+ A NIVI L G
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------- 117
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL RAV EA+
Sbjct: 118 -------------------------------------------NKADLASKRAVEFQEAQ 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+A+ N+L F+ETSA + NV F I
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 51/212 (24%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
DY+FK++LIG+S VGK++ L R+ + F ST+G++F +++ K IK QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQERYR IT+AYYRGA+G LL+YDIA ++ V+ W +++ ++ N ++LVG
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG----- 134
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
NK DL R VPA+
Sbjct: 135 ----------------------------------------------NKCDLEDERVVPAE 148
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ + A+ F E SA ++ NV+ F+ ++
Sbjct: 149 DGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 52/219 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTI 60
G+ D YD FKV+L+GDSGVGK+ LL RF F + ST+G++F + + VD +
Sbjct: 1 GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K Q+WDTAGQER+R++T AYYR A LL+YD+ +++N++ WL E+ ++A ++ +M
Sbjct: 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
L+G NK D
Sbjct: 121 LLG---------------------------------------------------NKVDSA 129
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
H R V ++ + A+ L F+ETSA NV+ AF I
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 168
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 102/208 (49%), Gaps = 51/208 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
KV L+GD+GVGKS+++ RF + F+ TIG F T+++Q + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+RA+ YYRG+ A++VYDI K T+ ++ W+RELR H GPPS
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----------GPPS----- 111
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
IV+ + GNK DL +R V +AK
Sbjct: 112 ------------------------------------IVVAIAGNKCDLTDVREVMERDAK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
+A+ + F+ETSA ++ N+ F I
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEI 163
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 51/215 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ +K +K QIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVG
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG---- 135
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NK D+ R VP
Sbjct: 136 -----------------------------------------------NKCDMEEERVVPT 148
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
++ + AE+ F E SA ++ +V AF+ ++ A
Sbjct: 149 EKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 51/213 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F ++I + K IK QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVG
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG---- 117
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NK D+ R V +
Sbjct: 118 -----------------------------------------------NKCDMEDERVVSS 130
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ + A+ F E SA D+ NV+ F+ ++
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 84/115 (73%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D+ +V++IG GVGK++L+ RFT + F KST+GV+F +++++ K I+ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
GQER+ +ITSAYYR A G +LVYDI K T++++ +W++ + +A ++ ++LVG
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K+++IG+SGVGKS+LL RFT + F+ E +TIGV+F ++I VD K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN-IVIMLVG 123
R+R +T +YYRGA G +LVYD+ + T+ ++ WL EL + +N IV LVG
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 49/208 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
LFK++L+GD GVGKS+L++R+ N+F+ + TIGVEF + ++VD + QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER+R++ + +YRG+ LL + + +++N+ W +E +AD V P
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD-------VKEP----- 118
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
++ +++GNK+D++ R V +EA
Sbjct: 119 -----------------------------------ESFPFVILGNKTDIKE-RQVSTEEA 142
Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
+ + + N + + ETSA DSTNV AF+
Sbjct: 143 QAWCKDNGDYPYFETSAKDSTNVAAAFE 170
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 49/208 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+L+GD GVGKS+L++R+ N+F+ ++ TIGVEF R ++VD + + QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER++++ + +YRGA LL + + ++EN+ W +E +AD V P
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD-------VKDP----- 114
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
+H + +++GNK D + R V +EA
Sbjct: 115 ---------------EHFPF--------------------VVLGNKVD-KEDRQVTTEEA 138
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQ 217
+T+ E + ++ETSA D TNV AF+
Sbjct: 139 QTWCMENGDYPYLETSAKDDTNVTVAFE 166
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 51/213 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
+DY FK+++IG+S VGK++ L R+ + F ST+G++F ++I + K IK QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AG ERYR IT+AYYRGA G +L YDI ++ V+ W +++ ++ N ++LVG
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG---- 120
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
NK D R V +
Sbjct: 121 -----------------------------------------------NKCDXEDERVVSS 133
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ + A+ F E SA D+ NV+ F+ ++
Sbjct: 134 ERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 49/210 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER++++ A+YRGA +LV+D+ T++ ++ W RD ++ P
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW----RDE------FLIQASP----- 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
RD +N +++GNK DL + R V A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDLEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
+ + +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 49/210 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER++++ A+YRGA +LV+D+ T++ ++ W RD ++ P
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW----RDE------FLIQASP----- 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
RD +N +++GNK DL + R V A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDLEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
+ + +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 49/208 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
LFKV+L+GD GVGKS+L++R+ N+F+ + TIGVEF + ++VD + QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER+R++ + +YRG+ LL + + +++N+ W +E +AD V P
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD-------VKEP----- 114
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
++ +++GNK D+ R V +EA
Sbjct: 115 -----------------------------------ESFPFVILGNKIDISE-RQVSTEEA 138
Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
+ + N + + ETSA D+TNV AF+
Sbjct: 139 QAWCRDNGDYPYFETSAKDATNVAAAFE 166
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 49/208 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
LFKV+L+GD GVGKS+L++R+ N+F+ + TIGVEF + ++VD + QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER+R++ + +YRG+ LL + + +++N+ W +E +AD V P
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD-------VKEP----- 116
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
++ +++GNK D+ R V +EA
Sbjct: 117 -----------------------------------ESFPFVILGNKIDISE-RQVSTEEA 140
Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
+ + N + + ETSA D+TNV AF+
Sbjct: 141 QAWCRDNGDYPYFETSAKDATNVAAAFE 168
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 49/210 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER++++ A+YRGA +LV+D+ T++ ++ W E ++ P
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF---------LIQASP------ 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
RD +N +++GNK D + R V A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDFEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
+ + +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 54/213 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ +D + IK Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 71 ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
ER+R ++ YYR + VYD+ ++ ++ W+ E + H
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH----------------- 122
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
LL DI + +LVGNK DLR VP D
Sbjct: 123 ---------LLANDIPR------------------------ILVGNKCDLRSAIQVPTDL 149
Query: 190 AKTFAERNNLSFIETSAL---DSTNVETAFQNI 219
A+ FA+ +++ ETSA D+ +VE F +
Sbjct: 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 49/210 (23%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
ER++++ A+YRGA +LV+D+ T++ ++ W RD ++ P
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW----RDE------FLIQASP----- 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
RD +N +++GNK DL + R V A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDLEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
+ + +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 54/213 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ +D + IK Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 71 ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
ER+R ++ YYR + VYD ++ ++ W+ E + H
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQH----------------- 131
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
LL DI + +LVGNK DLR VP D
Sbjct: 132 ---------LLANDIPR------------------------ILVGNKCDLRSAIQVPTDL 158
Query: 190 AKTFAERNNLSFIETSAL---DSTNVETAFQNI 219
A+ FA+ ++ ETSA D+ +VE F +
Sbjct: 159 AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 76/111 (68%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+VL+G++ VGKS+++ RF N+F + TIG F T+ + +++ T+K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
+ ++ YYR A AL+VYD+ K ++ W++EL + A ++I+I LVG
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 62/227 (27%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ------- 57
+ +YDYL K + +GDSGVGK+++L ++T +FN + +T+G++F + +
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 58 ---KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA- 113
+ I Q+WDTAG ER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ HA
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 114 DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 173
+N I+L G
Sbjct: 125 SENPDIVLCG-------------------------------------------------- 134
Query: 174 GNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
NKSDL RAV +EA+ AE+ + + ETSA + TN+ A + +L
Sbjct: 135 -NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 77/118 (65%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+VL GD+ VGKS+ L R +NEF +T+GV+F +++ VD + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
R+R+I +Y+R A G LL+YD+ ++ N+ W+ + D A + + IMLVG + +R
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 62/225 (27%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
+YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 59 --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
+ Q+WDTAGQER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ +A +
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
N I+L+G N
Sbjct: 141 NPDIVLIG---------------------------------------------------N 149
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
K+DL R V +A+ A++ + + ETSA NVE A + +L
Sbjct: 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +TI+ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI +++ +W+ ++R +++IMLVG
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V +E +
Sbjct: 119 -------------------------------------------NKTDLADKRQVSIEEGE 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ N+ FIETSA NV+ F+ + A
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 51/211 (24%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
Y FKVVL+G+ VGK++L+ R+ N+FN + +T+G F T+ + + K + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
QER+ A+ GP
Sbjct: 65 QERFHAL----------------------------------------------GPI---- 74
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
YYR + GA+LVYDI +++ V+ W++ELR I + +VGNK DL R V E
Sbjct: 75 -YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
A+++AE TSA + +E F ++
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 62/225 (27%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
+YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59 --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
+ Q+WDTAG ER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
N I+L+G N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
K+DL R V +A+ AE+ + + ETSA NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 62/225 (27%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
+YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59 --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
+ Q+WDTAG ER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
N I+L+G N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
K+DL R V +A+ AE+ + + ETSA NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI ++ +W+ ++R +++IMLVG
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG-------- 126
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V +E +
Sbjct: 127 -------------------------------------------NKTDLSDKRQVSTEEGE 143
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ N+ FIETSA NV+ F+ + A
Sbjct: 144 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI +++ +W+ ++R +++IMLVG
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 113
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V +E +
Sbjct: 114 -------------------------------------------NKTDLADKRQVSIEEGE 130
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ N+ FIETSA NV+ F+ + A
Sbjct: 131 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 161
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 51/206 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V +G+ VGK+++++RF + F+ +STIG++F ++++ +D+ ++ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI ++EN +W++++ + ++++I LVG
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVG-------- 113
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL LR V +E
Sbjct: 114 -------------------------------------------NKTDLGDLRKVTYEEGX 130
Query: 192 TFAERNNLSFIETSALDSTNVETAFQ 217
A+ N F ETSA N++ F+
Sbjct: 131 QKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI +++ +W+ ++R +++IMLVG
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVG-------- 114
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R + +E +
Sbjct: 115 -------------------------------------------NKTDLADKRQITIEEGE 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ ++ FIETSA NV+ F+ + +A
Sbjct: 132 QRAKELSVMFIETSAKTGYNVKQLFRRVASA 162
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +TI+ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI +++ +W+ ++R +++IMLVG
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 125
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V +E +
Sbjct: 126 -------------------------------------------NKTDLADKRQVSIEEGE 142
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ N+ FIETSA NV+ F+ + A
Sbjct: 143 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 173
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 51/211 (24%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
Y FKVVL+G+ VGK++L+ R+ N+FN + +T+ F T+ + + K + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
QER+ A+ GP
Sbjct: 65 QERFHAL----------------------------------------------GPI---- 74
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
YYR + GA+LVYDI +++ V+ W++ELR I + +VGNK DL R V E
Sbjct: 75 -YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
A+++AE TSA + +E F ++
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAG 69
+ KV+++GDSGVGK++L+ R+ ++++ + K+TIG +F T+ + VD K Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
QER++++ A+YRGA +LVYD+ ++EN++ W E HA+ N
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN 114
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 51/211 (24%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
Y FKVVL+G+ VGK++L+ R+ N+FN + +T+ F T+ + + K + IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
QER+ A+ GP
Sbjct: 79 QERFHAL----------------------------------------------GPI---- 88
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
YYR + GA+LVYDI +++ V+ W++ELR I + +VGNK DL R V E
Sbjct: 89 -YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 147
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
A+++AE TSA + +E F ++
Sbjct: 148 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 178
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 62/225 (27%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
+YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59 --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
+ Q+WDTAG ER+R++T+A++R A G LL +D+ ++ NV W +L+ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
N I+L+G N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
K+DL R V +A+ AE+ + + ETSA NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 62/225 (27%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
+YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59 --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
+ Q+WDTAG ER+R++T+A++R A G LL +D+ ++ NV W +L+ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
N I+L+G N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
K+DL R V +A+ AE+ + + ETSA NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI +++ +W+ ++R +++IMLVG
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V +E +
Sbjct: 119 -------------------------------------------NKTDLADKRQVSIEEGE 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ N+ FIETSA NV+ F+ + A
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+R++ +Y R + A++VYDI +++ +W+ ++R +++IMLVG
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 128
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V +E +
Sbjct: 129 -------------------------------------------NKTDLADKRQVSIEEGE 145
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+ N+ FIETSA NV+ F+ + A
Sbjct: 146 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 52/205 (25%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++G+ VGKS+++ R+ + F + K TIGV+F R IQV+ + ++ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
+ AIT AYYRGA +LV+ ++E + W + V+ VG
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK---------VVAEVG--------- 108
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
+I LV NK DL + +EA+
Sbjct: 109 ----------------------------------DIPTALVQNKIDLLDDSCIKNEEAEG 134
Query: 193 FAERNNLSFIETSALDSTNVETAFQ 217
A+R L F TS + NV F+
Sbjct: 135 LAKRLKLRFYRTSVKEDLNVSEVFK 159
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
+Y + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 126
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + T+GVE ++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 114
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++ +D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+ E FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
WDTAGQE++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+ E FK+VL+GD G GK+ + R EF + T+GVE ++ IK +
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNV 63
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
WDTAGQE++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +TIGVE S + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCG 123
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +TIGVE S + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCG 115
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +TIGVE S + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCG 116
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R E + +T+GVE ++ IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 126
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+ E FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +
Sbjct: 6 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 65
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
WDTAG E++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 66 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 123
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
FK+VL+GD G GK+ + R EF + +T+GVE ++ IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
++ + YY A A++++D+ +TY+NV W R+L +NI I+L G
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 117
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 49/209 (23%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-TIKAQIWDTAGQ 70
K+V++GD GK++L + F + F + K TIG++F R I + + QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
+ Y GA G LLVYDI + ++EN+E W
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW------------------------- 101
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
Y + K ++ E ++ ++ LVGNK DL H+R + ++
Sbjct: 102 -----------YTVVKKVSEE------------SETQPLVALVGNKIDLEHMRTIKPEKH 138
Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNI 219
F + N S SA +V FQ +
Sbjct: 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKV 167
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 91/242 (37%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---------------- 55
+K VL+G+S VGKS+++ R T++ F+ + +TIG F T + +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 56 ---------------------DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA 94
+ IK IWDTAGQERY +I YYRGA A++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 95 KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154
T + + W+ +L+ N +I+LV
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILV-------------------------------- 153
Query: 155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVET 214
NK D + V E + +A+ NNL FI+TSA TN++
Sbjct: 154 -------------------ANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTSAKTGTNIKN 193
Query: 215 AF 216
F
Sbjct: 194 IF 195
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQ 70
+K+ LIGD GVGK+ ++R F +T+G + DQ IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
E+ + YY GA GA+L +D+ +T +N+ RW++E + I++ ++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 131 YYRGAVGALLVYDIAKHLTYENVE 154
R + LV ++ K YE E
Sbjct: 132 --RQKISKKLVMEVLKGKNYEYFE 153
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G LLV+ I +H ++ + + LR A+++ + +LV
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------- 114
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
VGNKSDL R VP +E
Sbjct: 115 -------------------------------------------VGNKSDLEERRQVPVEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
A++ AE + ++ETSA NV+ F +++
Sbjct: 132 ARSKAEEWGVQYVETSAKTRANVDKVFFDLM 162
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G LLV+ I +H ++ + + LR A+++ + +LV
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------- 118
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
VGNKSDL R VP +E
Sbjct: 119 -------------------------------------------VGNKSDLEERRQVPVEE 135
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
A++ AE + ++ETSA NV+ F +++
Sbjct: 136 ARSKAEEWGVQYVETSAKTRANVDKVFFDLM 166
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
K V +GD VGK+ +L +T N F + T+ F+ ++ VD T+ +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQ 64
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
E Y + YRGA +L + + +YENV ++W+ ELR +A + I+LVG
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVG 117
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
K V +GD VGK+ +L +T N F + T+ F+ ++ VD T+ +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
E Y + YRGA LL + + +YEN+ ++WL EL+ +A I I+LVG
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVG 117
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 53/211 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G L V+ I + ++ + + LR D+N+ +LVG
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG------ 126
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
NKSDL R V +E
Sbjct: 127 ---------------------------------------------NKSDLEDKRQVSVEE 141
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
AK AE+ N++++ETSA NV+ F +++
Sbjct: 142 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
K V +GD VGK+ +L +T N+F + T+ F+ ++ VD + + +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
E Y + YRGA +L + + +YENV ++W+ ELR A N+ I+LVG
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVG 120
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
K V +GD VGK+ LL +T N F + T+ F+ ++ V+ T+ +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQ 66
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I+LVG
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG 119
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KVVL+GD G GK++LL F F ES + E ++QV K + IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRR 130
Y + +Y A LL +D+ +++N+ RW E+ +H + + I++VG + LR+
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G L V+ I + ++ + + LR D+N+ +LVG S
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 133
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
DL R V +E
Sbjct: 134 ------------------------------------------------DLEDKRQVSVEE 145
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
AK AE+ N++++ETSA NV+ F +++
Sbjct: 146 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G L V+ I + ++ + + LR D+N+ +LVG S
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 121
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
DL R V +E
Sbjct: 122 ------------------------------------------------DLEDKRQVSVEE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
AK AE+ N++++ETSA NV+ F +++
Sbjct: 134 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y +L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 116
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K VL+GD VGK++L+ +T N + E T F+ + VD + ++ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRY 131
+ + Y LL + + +++NV E+W+ E+R H + +I LVG S LR
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLRE- 138
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
D ++I L D + VP + AK
Sbjct: 139 ---------------------------------DVKVLIEL-----DKCKEKPVPEEAAK 160
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNILTA 222
AE S+IE SAL N++ F + A
Sbjct: 161 LLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y +L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y +L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y +L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 118
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIML 121
Y + Y L+ + + +YENV +W E+R H +I++
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV 113
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G L V+ I + ++ + + LR D+N+ +LVG S
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 119
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
DL R V +E
Sbjct: 120 ------------------------------------------------DLEDKRQVSVEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
AK A++ N++++ETSA NV+ F +++
Sbjct: 132 AKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIML 121
Y + Y L+ + + +YENV +W E+R H +I++
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV 119
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N F+ E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 73
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 124
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIML 121
Y + Y L+ + + +YENV +W E+R H +I++
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV 120
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 90
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 81
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 133
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 69
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 121
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 48/225 (21%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y + Y VG DI D+ I +
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSR---------------GKDKPIADVF---------- 99
Query: 132 YRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGNKSDLR---------- 180
L+ + + ++ENV +W E+R H N I+LVG K DLR
Sbjct: 100 -------LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLK 151
Query: 181 HLRAVPADEAKTFA---ERNNLSFIETSALDSTNVETAFQNILTA 222
+ P + A E + ++E SAL ++T F + A
Sbjct: 152 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 196
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 53/211 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF +E + + + +D + ++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
E Y AI Y+R G L V+ I + ++ + + LR D+N+ +LVG S
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 121
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
DL R V +E
Sbjct: 122 ------------------------------------------------DLEDKRQVSVEE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
AK AE+ N++++ETSA NV+ F +++
Sbjct: 134 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H I+LVG
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVG 114
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H I+LVG
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVG 115
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H I+LVG
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVG 115
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
LVGNK DL R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDL-AARTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A + +IETSA VE AF ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
LVGNK DL R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDLAG-RTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A + +IETSA VE AF ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
LVGNK DL R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDL-AARTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A + +IETSA VE AF ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L +F + F + TI + + ++VD + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ A+ Y + G LVY I T+ + L++LR+ +LR
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 102
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++D D + ++LVGNK DL R V ++ +
Sbjct: 103 ----------------------------VKDTDD--VPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
A + NN +F+E+SA NV F +++
Sbjct: 133 NLARQWNNCAFLESSAKSKINVNEIFYDLV 162
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
LVGNK DL R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDL-AARTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A + +IETSA VE AF ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N E T+ ++ ++ VD K + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 65
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 117
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 120
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 117
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 118
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 90
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + ++ENV +W E+R H N I+LVG
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 52/210 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L +F + F E TI + + ++VD + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ A+ Y + G LVY I T+ + L++LR+ +LR
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 102
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++D D + ++LVGNK DL R V ++ +
Sbjct: 103 ----------------------------VKDTED--VPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
A + N +F+E+SA NV F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L +F + F + TI + + ++VD + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ A+ Y + G LVY I T+ + L++LR+ +LR
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 104
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++D D + ++LVGNK DL R V ++ +
Sbjct: 105 ----------------------------VKDTDD--VPMILVGNKCDLEDERVVGKEQGQ 134
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
A + NN +F+E+SA NV F +++
Sbjct: 135 NLARQWNNCAFLESSAKSKINVNEIFYDLV 164
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 117
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 119
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVG 136
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 118
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 118
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 136
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F+++EF T+ E I+VD K ++ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + + + EN+ E+W+ E++ H N+ I+LV
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVA 136
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++E++ + +++ D V M++
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL--------- 114
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
VGNK DL R V +A+
Sbjct: 115 -----------------------------------------VGNKCDLPS-RTVDTKQAQ 132
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A + FIETSA V+ AF ++
Sbjct: 133 DLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 52/210 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L +F + F + TI + + ++VD + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ A+ Y + G LVY I T+ + L++LR+ +LR
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 102
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++D D + ++LVGNK DL R V ++ +
Sbjct: 103 ----------------------------VKDTED--VPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
A + N +F+E+SA NV F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GDS GK+ LL F ++ F T+ E T S ++D + I+ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
Y + Y + L+ +DI++ T ++V ++W E+++ N ++LVG S LR
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 145
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GDS GK+ LL F ++ F T+ E T S ++D + I+ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
Y + Y + L+ +DI++ T ++V ++W E+++ N ++LVG S LR
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 124
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
E Y + Y L+ + + ++ +V +W E+R H N I+LVG
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
E Y + Y L+ + + ++ +V +W E+R H N I+LVG
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GDS GK+ LL F ++ F T+ E T S ++D + I+ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
Y + Y + L+ +DI++ T ++V ++W E+++ N ++LVG S LR
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 140
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L K V++GD VGK+ LL +T N F E T+ ++ ++ VD K + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
E Y + Y L+ + + ++ +V +W E+R H N I+LVG
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 54/210 (25%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVGPPSLLRR 130
Y A+ Y R G L V+ I ++E++ + +++ D +++ ++LVG
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG------- 116
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
NKSDL R V +A
Sbjct: 117 --------------------------------------------NKSDLPS-RTVDTKQA 131
Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ A + FIETSA V+ AF ++
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 114
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 114
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 13 KVVLIGDSGVGKSNLLSRFTR--NEFNLESKSTIGVEFATRSIQVDQKTIKAQIW--DTA 68
KV ++G++ VGKS L+S FT ++F + T GVE + + T+ +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELR 110
G + Y+ S Y+ G A+LV+D++ ++E+ + W L+
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK 123
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 133 PSTIEK---------LAKNKQKPITPETAEKLARDLK 160
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 125 PSTIEK---------LAKNKQKPITPETAEKLARDLK 152
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 125 PSTIEK---------LAKNKQKPITPETAEKLARDLK 152
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 127 PSTIEK---------LAKNKQKPITPETAEKLARDLK 154
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 126 PSTIEK---------LAKNKQKPITPETAEKLARDLK 153
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 126 PSTIEK---------LAKNKQKPITPETAEKLARDLK 153
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 124 PSTIEK---------LAKNKQKPITPETAEKLARDLK 151
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 130 PSTIEK---------LAKNKQKPITPETAEKLARDLK 157
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+ K V++GD VGK+ LL + + F E T+ +A S+ V K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
E Y + Y L+ + + +++NV E W+ EL+++A N+ +L+G
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIG 129
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 130 PSTIEK---------LAKNKQKPITPETAEKLARDLK 157
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
++ +Y R G L+VY + ++E+V+R+ + LR ++ ++LV NK DL HLR
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
V D+ K A + N+ +IETSA D NV+ F +++
Sbjct: 141 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
++ +Y R G L+VY + ++E+V+R+ + LR ++ ++LV NK DL HLR
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
V D+ K A + N+ +IETSA D NV+ F +++
Sbjct: 141 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
++ +Y R G L+VY + ++E+V+R+ + LR ++ ++LV NK DL HLR
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
V D+ K A + N+ +IETSA D NV+ F +++
Sbjct: 141 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
++ +Y R G L+VY + ++E+V+R+ + LR ++ ++LV NK DL HLR
Sbjct: 76 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 135
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
V D+ K A + N+ +IETSA D NV+ F +++
Sbjct: 136 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E + +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++++F T+ E I+VD K ++ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVG
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 119
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+ E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
Y + Y L+ + + ++ENV E+W+ E+ H + +LVG
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
PS + + L + K +T E E+ R+L+
Sbjct: 127 PSTIEK---------LAKNKQKPITPETAEKLARDLK 154
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDQKT---IKAQIWDT 67
++VVLIG+ GVGKS L + F +++S + G + R++ VD ++ I +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
G+ + L DH M VG
Sbjct: 67 KGENEW-----------------------------------LHDHC------MQVGDA-- 83
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVP 186
L+VY I ++E +LR ++I I+LVGNKSDL R V
Sbjct: 84 ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
E + A + FIETSA NV+ F+ I+
Sbjct: 134 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDQKT---IKAQIWDT 67
++VVLIG+ GVGKS L + F +++S + G + R++ VD ++ I +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
G+ + L DH M VG
Sbjct: 98 KGENEW-----------------------------------LHDHC------MQVGDA-- 114
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVP 186
L+VY I ++E +LR ++I I+LVGNKSDL R V
Sbjct: 115 ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 164
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
E + A + FIETSA NV+ F+ I+
Sbjct: 165 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL ++ +F T+ E ++VD + ++ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
Y + Y + L+ + I + ENV E+W+ E+ H Q + I+LVG
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVG 121
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 51/197 (25%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L +F ++ F + TI + + + +D + + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G LLV+ + ++E + ++ R++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQI---------------------------------- 102
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LR ++L+GNK+DL H R V +E + A + ++++E
Sbjct: 103 ----------------LRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYME 146
Query: 204 TSALDSTNVETAFQNIL 220
SA NV+ AF ++
Sbjct: 147 ASAKIRMNVDQAFHELV 163
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 53/210 (25%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFT-RNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
L++VVL+GD GVGK++L S F + E +L + +G + R++ VD + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
E+ + W +E
Sbjct: 62 AEKLD----------------------------KSWSQE--------------------- 72
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPAD 188
+G ++VY IA ++E+ +LR H ++ I+LVGNK+DL R V +
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQN 218
E + A + FIETSA NV F+
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELFEG 162
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKT---IKAQIWDT 67
++VVLIG+ GVGKS L + F +++S +G + R++ VD ++ I +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
G+ + L DH M VG
Sbjct: 67 KGENEW-----------------------------------LHDHC------MQVGDA-- 83
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD-HADQNIVIMLVGNKSDLRHLRAVP 186
L+VY I ++E +LR ++I I+LVGNKSDL R V
Sbjct: 84 ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
E + A + FIETSA NV+ F+ I+
Sbjct: 134 VSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKT---IKAQIWDT 67
++VVLIG+ GVGKS L + F +++S +G + R++ VD ++ I +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
G+ + L DH M VG
Sbjct: 67 KGENEW-----------------------------------LHDHX------MQVGDA-- 83
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD-HADQNIVIMLVGNKSDLRHLRAVP 186
L+VY I ++E +LR ++I I+LVGNKSDL R V
Sbjct: 84 ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
E + A + FIETSA NV+ F+ I+
Sbjct: 134 VSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
++ +Y R G LLV+ I ++ V + + LR + ++LVGNK+DL R
Sbjct: 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
VP EA F +++++ E SA NV+ AF+ ++ A
Sbjct: 132 VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 169
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 53/209 (25%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+ ++G VGKS+L +F +F + TI F T+ I V+ + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
Y Y G +LVY + ++E ++ +L D + I IMLVG
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 116
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK DL R + +E K
Sbjct: 117 -------------------------------------------NKKDLHMERVISYEEGK 133
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
AE N +F+E+SA ++ F+ I+
Sbjct: 134 ALAESWNAAFLESSAKENQTAVDVFRRII 162
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K+V++GD VGK+ LL F++ E T+ F + ++ + +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRR 130
Y + Y + LL + + +++N+ +W E++ + D + LVG LR+
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRK 140
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 54/211 (25%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
++V + G GVGKS+L+ RF + F T+ + + I D+ QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ P++ R
Sbjct: 63 QF---------------------------------------------------PAMQRLS 71
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRD-HAD-QNIVIMLVGNKSDLRHLRAVPADE 189
+LVY I + E ++ ++ + D ++I IMLVGNK D R V + E
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
A+ A +F+ETSA + NV+ FQ +L
Sbjct: 132 AEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K+V++GD VGK+ LL F++ E T+ F + ++ + +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRR 130
Y + Y + LL + + +++N+ +W E++ + D + LVG LR+
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRK 141
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--------------------- 113
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
VGNKSDL R V + +A+ A + +IE
Sbjct: 114 -----------------------------VGNKSDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 60/214 (28%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
++KV+L+G GVGKS L F E E+++ G + RSI VD G+
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVD------------GE 52
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
E +L+VYDI + ++ RWL P +
Sbjct: 53 E--------------ASLMVYDIWE----QDGGRWL-----------------PGHCM-- 75
Query: 131 YYRGAVGA--LLVYDIAKHLTYENVERWLRELRDHADQ--NIVIMLVGNKSDLRHLRAVP 186
A+G ++VY + ++E +LR A Q ++ I+LVGNKSDL R V
Sbjct: 76 ----AMGDAYVIVYSVTDKGSFEKASELRVQLR-RARQTDDVPIILVGNKSDLVRSREVS 130
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
DE + A + FIETSA NV+ F+ ++
Sbjct: 131 VDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 53/209 (25%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+ ++G VGKS+L +F +F TI F T+ I V+ + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
Y Y G +LVY + ++E ++ +L D + I IMLVG
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 113
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK DL R + +E K
Sbjct: 114 -------------------------------------------NKKDLHMERVISYEEGK 130
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
AE N +F+E+SA ++ F+ I+
Sbjct: 131 ALAESWNAAFLESSAKENQTAVDVFRRII 159
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 58/213 (27%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
++KV+L+G GVGKS L F E E+++ G + RSI VD G+
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVD------------GE 47
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
E +L+VYDI + ++ RWL P +
Sbjct: 48 E--------------ASLMVYDIWE----QDGGRWL-----------------PGHCM-- 70
Query: 131 YYRGAVGA--LLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPA 187
A+G ++VY + ++E +LR ++ I+LVGNKSDL R V
Sbjct: 71 ----AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 126
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
DE + A + FIETSA NV+ F+ ++
Sbjct: 127 DEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 53/209 (25%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+ ++G VGKS+L +F +F TI F T+ I V+ + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
Y Y G +LVY + ++E ++ +L D + I IMLVG
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK DL R + +E K
Sbjct: 119 -------------------------------------------NKKDLHMERVISYEEGK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
AE N +F+E+SA ++ F+ I+
Sbjct: 136 ALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 117
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 118 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 148
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 149 TSAKTRQGVEDAFYTLV 165
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 117
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 118 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 148
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 149 TSAKTRQGVEDAFYTLV 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 119
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 120 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 150
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 151 TSAKTRQGVEDAFYTLV 167
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 53/209 (25%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KVV++G VGK++L +F EF+ T+ + ++ + + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRD-HADQNIVIMLVGPPSLLRRY 131
Y + ++ G G +LVY + +++ +E ++L + H + ++LVG
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG-------- 136
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK+DL R V A E K
Sbjct: 137 -------------------------------------------NKADLSPEREVQAVEGK 153
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
AE +F+E+SA ++ + F ++
Sbjct: 154 KLAESWGATFMESSARENQLTQGIFTKVI 182
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 58/213 (27%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
++KV+L+G GVGKS L F E E+++ G + RSI VD G+
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVD------------GE 52
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
E +L+VYDI + ++ RWL P +
Sbjct: 53 E--------------ASLMVYDIWE----QDGGRWL-----------------PGHCM-- 75
Query: 131 YYRGAVGA--LLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPA 187
A+G ++VY + ++E +LR ++ I+LVGNKSDL R V
Sbjct: 76 ----AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 131
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
DE + A + FIETSA NV+ F+ ++
Sbjct: 132 DEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI E + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 53/209 (25%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+ ++G VGKS+L +F +F TI F T+ I V+ + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
Y Y G +LVY + ++E ++ +L D + I IMLVG
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
NK DL R + +E K
Sbjct: 119 -------------------------------------------NKKDLHMERVISYEEGK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
AE N +F+E+SA ++ F+ I+
Sbjct: 136 ALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+VL+GD GK+ +L ++ + T+ E T ++ +++ ++ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIML 121
Y + Y + LL +DI++ T ++ +++W E+ D+ V+++
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 120
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+VL+GD GK+ +L ++ + T+ E T ++ +++ ++ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIML 121
Y + Y + LL +DI++ T ++ +++W E+ D+ V+++
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 121
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+VL+GD GK+ +L ++ + T+ E T ++ +++ ++ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIML 121
Y + Y + LL +DI++ T ++ +++W E+ D+ V+++
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 51/215 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+ + D +FKV+L+G+SGVGKS L F + + + + R I VD++ +
Sbjct: 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV---- 72
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
L+VYDI + + WLR DH Q
Sbjct: 73 ----------------------TLVVYDIWEQ---GDAGGWLR---DHCLQT-------- 96
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLR 183
L+V+ + ++ V L LR ++ ++LVGNKSDL R
Sbjct: 97 ----------GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 146
Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAFQN 218
V +E + A + IETSA N F+
Sbjct: 147 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--------------------- 113
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
VGNKSDL R V + +A+ A + +IE
Sbjct: 114 -----------------------------VGNKSDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E +I + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 118
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 119 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 149
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 150 TSAKTRQGVEDAFYTLV 166
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGN+ DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNRCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E +I + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
K+ L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F + TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG+E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F + TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDLA-ARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 73/197 (37%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++ ++ + +++ D + V M+
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV---------------------- 130
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V +A A+ + FIE
Sbjct: 131 ----------------------------LVGNKCDL-PTRTVDTKQAHELAKSYGIPFIE 161
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 162 TSAKTRQGVEDAFYTLV 178
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA-------- 67
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
+RD +Y R G L V+
Sbjct: 68 -------------------------MRD------------------QYMRTGEGFLCVFA 84
Query: 144 IAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFI 202
I ++E++ + +++ D +++ ++LVGNKSDL R V +A+ A + FI
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFI 143
Query: 203 ETSALDSTNVETAFQNIL 220
ETSA V+ AF ++
Sbjct: 144 ETSAKTRQGVDDAFYTLV 161
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE Y A
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA-------- 67
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
+RD +Y R G L V+
Sbjct: 68 -------------------------MRD------------------QYMRTGEGFLCVFA 84
Query: 144 IAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFI 202
I ++E++ + +++ D +++ ++LVGNKSDL R V +A+ A + FI
Sbjct: 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFI 143
Query: 203 ETSALDSTNVETAFQNIL 220
ETSA V+ AF ++
Sbjct: 144 ETSAKTRQGVDDAFYTLV 161
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 117
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 118 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 148
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 149 TSAKTRQGVEDAFYTLV 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKXDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKXDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+ + G +GVGKS L+ RF F E T+ + ++ +D + + +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV---ERWLRELRDHADQNIVIMLVG 123
+ R G +LVYDI ++E V + L E++ +N+ ++LVG
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVG 139
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 80 YYRGAVG--ALLVYDIAKHLTYENVERWLRELRDHA--DQNIVIMLV----GPPSLLRR- 130
+ R VG AL+V + K +E R A D +V M + G ++R
Sbjct: 34 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQRE 93
Query: 131 -YYRGAVGALLVYDIAKHLTYENV---ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
+ R G +LVYDI ++E V + L E++ +N+ ++LVGNK+DL H R V
Sbjct: 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVS 151
Query: 187 ADEAKTFAERNNLSFIETSAL 207
+E + A +F E SA
Sbjct: 152 TEEGEKLATELACAFYECSAC 172
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 51/211 (24%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D +FKV+L+G+SGVGKS L F + + + + R I VD++ +
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEV-------- 61
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
L+VYDI + + WL+ DH Q
Sbjct: 62 ------------------TLIVYDIWEQ---GDAGGWLQ---DHCLQT------------ 85
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPA 187
L+V+ + ++ V L LR ++ ++LVGNKSDL R V
Sbjct: 86 ------GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL 139
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQN 218
+E + A + IETSA N F+
Sbjct: 140 EEGRHLAGTLSCKHIETSAALHHNTRELFEG 170
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ ++ +++ D + V M+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
LVGNK DL R V + +A+ A + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
TSA VE AF ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 52/197 (26%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L + +N F E TI + + + +D +T I DTAG E Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G L V+ I ++E++ + +++ D V M++
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL--------------------- 131
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
VGNK DL R V +A+ A + FIE
Sbjct: 132 -----------------------------VGNKCDLPS-RTVDTKQAQDLARSYGIPFIE 161
Query: 204 TSALDSTNVETAFQNIL 220
TSA V+ AF ++
Sbjct: 162 TSAKTRQGVDDAFYTLV 178
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+FKV+L+G+SGVGKS L F + + + + R I VD++ +
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEV---------- 51
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
L+VYDI + + WL+ DH Q
Sbjct: 52 ----------------TLIVYDIWEQ---GDAGGWLQ---DHCLQT-------------- 75
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPADE 189
L+V+ + ++ V L LR ++ ++LVGNKSDL R V +E
Sbjct: 76 ----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQN 218
+ A + IETSA N F+
Sbjct: 132 GRHLAGTLSCKHIETSAALHHNTRELFEG 160
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 51/197 (25%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS L +F F + TI +F + I+VD +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
G +LVY + +++++ + +RD + ++RY
Sbjct: 75 GQGFILVYSLVNQQSFQDI----KPMRDQIIR------------VKRY------------ 106
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
+ + ++LVGNK DL R V + E + AE F+E
Sbjct: 107 ----------------------EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFME 144
Query: 204 TSALDSTNVETAFQNIL 220
TSA T V+ F I+
Sbjct: 145 TSAKSKTMVDELFAEIV 161
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G++E+ ++ L+G GK+ ++ +FN + T+G F R I TIK
Sbjct: 18 GSKEE-----MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK 70
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIM 120
+WD GQ R+R++ Y RG + + D A E + L L D Q I ++
Sbjct: 71 --LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 121 LVG 123
++G
Sbjct: 129 VLG 131
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
++ L+G GK+ ++ +FN + T+G F R I TIK +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVG 123
R+R++ Y RG + + D A E + L L D Q I ++++G
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 140
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G G GK+ +L + E + + TIG T V K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R R++ YYR G + V D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD 76
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G G GK+ +L + E + + TIG T V K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R R++ YYR G + V D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVID 93
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G G GK+ +L + E + + TIG T V K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R R++ YYR G + V D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVD 93
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCA 78
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G++E+ ++ L+G GK+ ++ +F+ + T+G F R + TIK
Sbjct: 18 GSKEE-----MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK 70
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIM 120
IWD GQ R+R++ Y RG + + D A E L L D Q I ++
Sbjct: 71 --IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVL 128
Query: 121 LVG 123
++G
Sbjct: 129 VLG 131
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCA 78
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL------RELRD 111
+ R + YY G G + V D A + + L RE+RD
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCA 91
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCA 90
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 51/198 (25%)
Query: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
KS+L+ RF + F TI + + I D+ QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
+LV+ + + E +GP L +G+V
Sbjct: 80 GHAFILVFSVTSKQSLEE--------------------LGPIYKLIVQIKGSV------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
++I +MLVGNK D R V EA+ A+ +F+E
Sbjct: 113 ----------------------EDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFME 149
Query: 204 TSALDSTNVETAFQNILT 221
TSA + NV+ FQ +LT
Sbjct: 150 TSAKMNYNVKELFQELLT 167
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTR---NEFNLESKSTIGVEFATRSIQVDQK---TIKAQIWD 66
K+ ++G++G GK+ LL + + ++ +S +T+G++ IQ+ K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAK-HLTYENVERWLRELRDHADQNIVIML 121
AG+E + + + L VYD++K + + WL ++ A + VI++
Sbjct: 61 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILV 116
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
+++ +G GK+ +L + + ++ + T+G T V K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 73 YRAITSAYYRGAVGALLVYDIA 94
R + YY G G + V D A
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCA 78
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTR---NEFNLESKSTIGVEFATRSIQVDQKTIK---AQIWD 66
K+ ++G++G GK+ LL + + ++ +S +T+G++ IQ+ K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAK-HLTYENVERWLRELRDHADQNIVIML 121
AG+E + + + L VYD++K + + WL ++ A + VI++
Sbjct: 63 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILV 118
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R R + Y++ G + V D
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVD 93
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L +F + + S T+G T ++ + K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
R+ Y+ G + V D A ++ +R L+ L
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCA 80
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGNKSDL 179
L R YY G G + V D A + + L R + D ++ +I++ NK DL
Sbjct: 61 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G G GK+ +L R E + +K TIG T S K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R YY + V D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVD 94
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCA 81
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGNKSDL 179
L R YY G G + V D A + + L R + D ++ +I++ NK DL
Sbjct: 62 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVD 76
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L +F + + S T+G T ++ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
R+ Y+ G + V D A ++ +R L+ L
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L +F + + S T+G T ++ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
R+ Y+ G + V D A ++ +R L+ L
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + + ++ + T+G T V K +K +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
+ R + YY G G + V D A
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCA 91
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGNKSDL 179
L R YY G G + V D A + + L R + D ++ +I++ NK DL
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVD 92
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVD 93
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVD 96
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G G GK+ +L + E + + TIG F +Q I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R R++ YY G + V D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVD 93
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVD 241
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVD 105
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G G GK+ +L R E + + TIG T V K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 72 RYRAITSAYYRGAVGALLVYD 92
R YY + V D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVD 78
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+++L + E + + TIG T V+ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + YY+ + V D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVD 93
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KV+++G GK+ +L +F NE + + TIG ++ K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 73 YRAITSAYYRGAVGALLVYD 92
R+ + YY +LV D
Sbjct: 73 LRSSWNTYYSNTEFIILVVD 92
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+ +++++G GK+ +L +F + + S T+G T ++ + K IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDTISP-TLGFNIKT----LEHRGFKLNIWDVGGL 55
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
+ R+ Y+ G + V D A ++ +R L+ L
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 94
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
+++++G GK+ +L + E + + TIG T V+ + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 73 YRAITSAYYRGAVGALLVYD 92
R + YY G + V D
Sbjct: 74 IRPLWRHYYSNTDGLIFVVD 93
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT------RSIQVDQ--KTIKAQ 63
KV LIGD GK++LL + F+ + T G+ T + ++ D K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 122
WD GQE A + + +L+ D T N WLR + + ++ VI+++
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVIVVM 157
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KV+++G GK+ +L +F+ NE + + TIG ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 73 YRAITSAYYRGAVGALLVYD 92
R+ + YY ++V D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVD 92
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+++++G GK+ +L + E + + TIG T V+ K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 72 RYRAITSAYYRGAVGALLVYD 92
+ R + Y++ G + V D
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVD 78
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KV+++G GK+ +L +F+ NE + + TIG ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 73 YRAITSAYYRGAVGALLVYD 92
R+ + YY ++V D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVD 92
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
GTRE +++++G G GK+ +L R E + + TIG T V K +K
Sbjct: 1 GTRE------MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLK 49
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
Q+WD G R YY + V D
Sbjct: 50 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 80
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KV+++G GK+ +L +F+ NE + + TIG I + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQES 78
Query: 73 YRAITSAYYRGAVGALLVYD 92
R+ + YY ++V D
Sbjct: 79 LRSSWNTYYTNTEFVIVVVD 98
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
KV+++G GK+ +L +F+ NE + + TIG ++ + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 77
Query: 73 YRAITSAYYRGAVGALLVYD 92
R+ + YY ++V D
Sbjct: 78 LRSSWNTYYTNTEFVIVVVD 97
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 22 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY 81
GK+ +L +F + + S T+G T ++ + K IWD GQ+ R+ Y+
Sbjct: 29 AGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 82 RGAVGALLVYDIAKHLTYENVERWLREL 109
G + V D A ++ +R L+ L
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSL 111
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ---NIVIMLVGNKSDLRH 181
P RY A L+VY + ++++ +L L HA + +I +L+GNK D+
Sbjct: 82 PRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 182 LRAVPADEAKTFAERNNLSFIETSA-LDSTNVETAFQ 217
R V E A R F E SA LD +V+ F
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
+++++G G GK+ +L R E + + TIG T V K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 73 YRAITSAYYRGAVGALLVYD 92
R YY + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF 193
G V L + ++ H+ E + +R D D N++ +VG LR L D+A+ F
Sbjct: 510 GLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDDARAF 569
Query: 194 AERNNLSFI 202
R+ + F+
Sbjct: 570 C-RSRMQFL 577
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
YR ++ G V L + ++ H+ E + +R D D N++ +VG LR
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLR 556
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF 193
G V L + ++ H+ E + +R D D N++ +VG LR L D+A+ F
Sbjct: 510 GLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDDARAF 569
Query: 194 AERNNLSFI 202
R+ + F+
Sbjct: 570 C-RSRMQFL 577
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
YR ++ G V L + ++ H+ E + +R D D N++ +VG LR
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLR 556
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 9 DYL--FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS 42
DYL F +L G SGVGKS++LSR T E + S
Sbjct: 161 DYLEGFICILAGPSGVGKSSILSRLTGEELRTQEVS 196
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D +++L+G GK+ LL + + S T F +S+Q + K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQ--SQGFKLNVWDIG 69
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYE 100
GQ + R +Y+ + V D A +E
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D +++L+G GK+ LL + + S T F +S+Q + K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQ--SQGFKLNVWDIG 68
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYE 100
GQ + R +Y+ + V D A +E
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
+ F ++++G+SG+GKS L++ + E E R++Q++ T+ +I +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTV--EIEERGV 93
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE 108
+ R + + Y A+ + E ER+L +
Sbjct: 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 132
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
+ F ++++G+SG+GKS L++ + E E R++Q++ T+ +I +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTV--EIEERGV 61
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE 108
+ R + + Y A+ + E ER+L +
Sbjct: 62 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 100
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
+++L+G GK+ LL + + S T F +S+Q + K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQ--SQGFKLNVWDIGGQRK 60
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYE 100
R +Y+ + V D A +E
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
+ F + ++G+SG+GKS L++ + E + E R++Q++ T+ +I +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTV--EIEERGV 74
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE 108
+ R + + Y A+ + E ER+L +
Sbjct: 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 113
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKS---TIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
V+ +G GK+ ++++ + N +S++ TIG + ++ ++D +GQ
Sbjct: 24 VLCLGLDNSGKTTIINKLKPS--NAQSQNILPTIGFSIE----KFKSSSLSFTVFDMSGQ 77
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
RYR + YY+ + V D + L + L L +H D
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 121
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
+ F + ++G+SG+GKS L++ + E E R++Q++ T+ +I +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTV--EIEERGV 93
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE 108
+ R + + Y A+ + E ER+L +
Sbjct: 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 132
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 94 AKHL--TYENVERWLRELRDHADQNIVIMLVGPP--------SLLRRYYRGAVGALLV 141
A+H+ Y++ E+ LR++ A N +I GP SLL R+Y+ G + +
Sbjct: 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVY 142
D KH+ + W+R R+ ADQ++ + + Y++ VGAL Y
Sbjct: 231 DAIKHIPFWYTSDWVRHQRNEADQDLFV--------VGEYWKDDVGALEFY 273
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVY 142
D KH+ + W+R R+ ADQ++ + + Y++ VGAL Y
Sbjct: 231 DAIKHIPFWYTSDWVRHQRNEADQDLFV--------VGEYWKDDVGALEFY 273
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 14 VVLIGDSGVGKSNL----------------LSRFTRNEF-NLESKSTIGVEFATRSIQVD 56
VV+ G SG GKS+L LS + R NL+ +E + +I +D
Sbjct: 27 VVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYARQFLGNLKKPDVDEIEGLSPAIAID 86
Query: 57 QKTIKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
QKT+ T G E Y + Y R +G + + L ++++ L++L +
Sbjct: 87 QKTVSHNPRSTVGTVTEIYDYLRVLYAR--IGKAHCPECGRPLEKKSIDEILQDLFNSFK 144
Query: 115 QNIVIMLVGP 124
+ I ++ P
Sbjct: 145 EGSRIYILAP 154
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDQKTIKAQIWDTA 68
F ++++G +GVGK+ + + R +F + KS + G F R+ V+Q Q+W
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTF--RAAAVEQ----LQVW--- 343
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103
GQ R A + GA A +++D + N++
Sbjct: 344 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNID 377
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human
Grlf1 (P190rhogap)
Length = 255
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 18 GDSGVGKSNLLSRFTR---NEFNLESKSTIGV-EFATRSIQVDQ 57
G G+GKS L +RF R +EF+L+ S + +F R + D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDH 78
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA---QIWDTAG 69
K+++ G+ GVGK+ L+ + K IG F T ++ D +T K +I T G
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER----LGKRAIG--FWTEEVR-DPETKKRTGFRIITTEG 54
Query: 70 QERY---RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
+++ + TS G+ G + Y + L +ER RE + + I+I +G
Sbjct: 55 KKKIFSSKFFTSKKLVGSYGVNVQY--FEELAIPILERAYREAKKDRRKVIIIDEIGKXE 112
Query: 127 LLRRYYRGAV 136
L + +R V
Sbjct: 113 LFSKKFRDLV 122
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT-RSIQVDQKTIKAQIWDTAGQ 70
F ++++G +GVGK+ + + R +F + KS + T R+ V+Q Q+W
Sbjct: 94 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVEQ----LQVWG---- 144
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103
+R A + GA A +++D + N++
Sbjct: 145 QRNNIPVIAQHTGADSASVIFDAIQAAKARNID 177
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT-RSIQVDQKTIKAQIWDTAGQ 70
F ++++G +GVGK+ + + R +F + KS + T R+ V+Q Q+W GQ
Sbjct: 100 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVEQ----LQVW---GQ 151
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103
R A + GA A +++D + N++
Sbjct: 152 -RNNIPVIAQHTGADSASVIFDAIQAAKARNID 183
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT-RSIQVDQKTIKAQIWDTAGQ 70
F ++++G +GVGK+ + + R +F + KS + T R+ V+Q Q+W GQ
Sbjct: 99 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVEQ----LQVW---GQ 150
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103
R A + GA A +++D + N++
Sbjct: 151 -RNNIPVIAQHTGADSASVIFDAIQAAKARNID 182
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQVDQKTIKAQI 64
+ F ++ +G++G+GKS L+ +F E + + GV+ + + + + ++ ++
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+VV+ G GK+ ++++ + + + +T+G T ++ + ++D G
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGA 73
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
+++R + YY + V D + HL V+ ++ + H D
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
+++L+G GK+ LL + + S T F +S+Q + K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQ--SQGFKLNVWDIGGLRK 60
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYE 100
R +Y+ + V D A +E
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESK---STIGVEFATRSIQVDQKTIKAQIWDTAG 69
K++L+G SG GKS++ S N +++ +TI VE + + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 64
Query: 70 Q----ERYRAITSAYYRGAVGALL-VYDIAKHLTYENVE---RWLRELRDHA-DQNIVIM 120
Q E Y + V L+ V+D+ +++E + L++LR ++ D I ++
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 124
Query: 121 L 121
L
Sbjct: 125 L 125
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
++ ++GD+ GKS+L+ RF + + K+ E + + VD +T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERW---LRELRDHADQNIVIMLVG 123
A + + A + V+ + +++ V R L LR + + LVG
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
++ ++GD+ GKS+L+ RF + + K+ E + + VD +T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERW---LRELRDHADQNIVIMLVG 123
A + + A + V+ + +++ V R L LR + + LVG
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 123 GPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM-LVGNKSDLRH 181
GPP L + AV + V+ + ++++ V + L + + V M LVG + +
Sbjct: 76 GPPELQFAAWVDAV--VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 182 LRAVPADEA---KTFAERNNLSFIETSALDSTNVETAFQNI 219
D++ K + ++ ET A NVE FQ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDV 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,168,736
Number of Sequences: 62578
Number of extensions: 235134
Number of successful extensions: 1790
Number of sequences better than 100.0: 365
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 643
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)