Query psy15625
Match_columns 223
No_of_seqs 133 out of 1473
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 17:30:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 2.2E-38 4.9E-43 222.2 17.3 167 4-221 2-169 (205)
2 KOG0078|consensus 100.0 6.7E-37 1.5E-41 217.9 18.0 170 2-222 3-172 (207)
3 KOG0080|consensus 100.0 1.7E-36 3.6E-41 205.4 16.5 171 1-221 1-171 (209)
4 KOG0098|consensus 100.0 2.2E-36 4.8E-41 209.9 16.0 164 7-221 2-165 (216)
5 KOG0092|consensus 100.0 9.4E-36 2E-40 208.3 18.0 162 10-222 4-165 (200)
6 KOG0087|consensus 100.0 1.2E-35 2.6E-40 210.6 16.5 167 5-222 8-174 (222)
7 KOG0094|consensus 100.0 3.5E-35 7.5E-40 205.5 17.6 163 10-222 21-183 (221)
8 cd04121 Rab40 Rab40 subfamily. 100.0 6E-35 1.3E-39 213.5 19.4 163 8-222 3-165 (189)
9 cd04120 Rab12 Rab12 subfamily. 100.0 1.8E-34 3.9E-39 212.9 18.9 160 12-222 1-161 (202)
10 KOG0394|consensus 100.0 2E-34 4.4E-39 199.7 14.6 168 8-222 6-176 (210)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.4E-33 3E-38 205.4 19.0 161 9-222 3-178 (182)
12 KOG0093|consensus 100.0 4.8E-34 1E-38 190.7 14.4 166 5-221 15-180 (193)
13 cd04122 Rab14 Rab14 subfamily. 100.0 2.9E-33 6.4E-38 201.7 19.3 161 11-222 2-162 (166)
14 cd04133 Rop_like Rop subfamily 100.0 3.6E-33 7.8E-38 202.1 19.0 158 12-222 2-171 (176)
15 KOG0086|consensus 100.0 5.9E-34 1.3E-38 191.6 13.2 169 3-222 1-169 (214)
16 cd01867 Rab8_Rab10_Rab13_like 100.0 6.4E-33 1.4E-37 200.1 19.0 163 9-222 1-163 (167)
17 cd04131 Rnd Rnd subfamily. Th 100.0 6.9E-33 1.5E-37 201.3 18.9 158 12-222 2-174 (178)
18 cd04117 Rab15 Rab15 subfamily. 100.0 1E-32 2.3E-37 197.8 19.3 160 12-222 1-160 (161)
19 cd01865 Rab3 Rab3 subfamily. 100.0 1.4E-32 3E-37 198.0 18.9 160 12-222 2-161 (165)
20 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.2E-32 4.8E-37 202.9 19.9 164 12-222 1-166 (201)
21 cd01868 Rab11_like Rab11-like. 100.0 2.6E-32 5.6E-37 196.5 19.2 162 10-222 2-163 (165)
22 KOG0079|consensus 100.0 1.1E-33 2.3E-38 189.2 10.5 162 8-221 5-166 (198)
23 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.7E-32 8E-37 197.3 19.2 160 11-223 1-174 (175)
24 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.2E-32 9.1E-37 195.6 19.2 161 11-222 2-162 (166)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.5E-32 9.7E-37 203.4 19.8 162 8-222 10-186 (232)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.6E-32 7.8E-37 196.9 18.7 161 11-222 2-162 (172)
27 cd04127 Rab27A Rab27a subfamil 100.0 3.7E-32 7.9E-37 198.5 18.8 164 9-222 2-175 (180)
28 cd01866 Rab2 Rab2 subfamily. 100.0 4.3E-32 9.4E-37 195.9 19.0 163 9-222 2-164 (168)
29 PLN03110 Rab GTPase; Provision 100.0 6.3E-32 1.4E-36 202.3 20.2 166 6-222 7-172 (216)
30 PLN03071 GTP-binding nuclear p 100.0 5E-32 1.1E-36 203.1 19.7 160 9-222 11-170 (219)
31 cd01875 RhoG RhoG subfamily. 100.0 4.3E-32 9.4E-37 199.6 19.0 159 11-222 3-175 (191)
32 cd04119 RJL RJL (RabJ-Like) su 100.0 5.7E-32 1.2E-36 195.1 18.8 165 12-222 1-165 (168)
33 PF00071 Ras: Ras family; Int 100.0 7.9E-32 1.7E-36 193.4 19.1 159 13-222 1-159 (162)
34 cd01864 Rab19 Rab19 subfamily. 100.0 1E-31 2.2E-36 193.4 19.2 163 9-222 1-164 (165)
35 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-31 2.7E-36 198.4 19.8 163 8-222 3-165 (199)
36 cd04109 Rab28 Rab28 subfamily. 100.0 9.8E-32 2.1E-36 201.3 19.4 163 12-222 1-164 (215)
37 cd04136 Rap_like Rap-like subf 100.0 9.6E-32 2.1E-36 193.1 18.3 160 12-222 2-161 (163)
38 KOG0095|consensus 100.0 1.8E-32 3.8E-37 183.8 13.2 163 7-220 3-165 (213)
39 cd04113 Rab4 Rab4 subfamily. 100.0 1.4E-31 3.1E-36 191.9 18.9 160 12-222 1-160 (161)
40 cd04140 ARHI_like ARHI subfami 100.0 1.7E-31 3.7E-36 192.3 19.1 163 12-223 2-164 (165)
41 cd04106 Rab23_lke Rab23-like s 100.0 1.7E-31 3.7E-36 191.6 18.8 159 12-222 1-161 (162)
42 cd04175 Rap1 Rap1 subgroup. T 100.0 1.6E-31 3.6E-36 192.2 18.3 161 11-222 1-161 (164)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.7E-31 3.8E-36 194.8 18.4 159 12-222 1-164 (182)
44 cd04125 RabA_like RabA-like su 100.0 2E-31 4.3E-36 195.9 18.7 160 12-222 1-160 (188)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.6E-31 5.7E-36 192.0 18.9 161 13-223 2-164 (170)
46 PTZ00369 Ras-like protein; Pro 100.0 3.5E-31 7.6E-36 194.6 19.3 162 10-222 4-165 (189)
47 cd04116 Rab9 Rab9 subfamily. 100.0 5.3E-31 1.2E-35 190.6 19.9 166 9-222 3-169 (170)
48 cd04112 Rab26 Rab26 subfamily. 100.0 2.5E-31 5.4E-36 195.8 18.2 160 12-222 1-161 (191)
49 PLN03108 Rab family protein; P 100.0 4.1E-31 8.8E-36 197.1 19.5 164 8-222 3-166 (210)
50 cd04144 Ras2 Ras2 subfamily. 100.0 2.7E-31 5.8E-36 195.4 17.8 161 13-222 1-161 (190)
51 cd00877 Ran Ran (Ras-related n 100.0 7.1E-31 1.5E-35 189.1 19.1 156 12-221 1-156 (166)
52 cd04111 Rab39 Rab39 subfamily. 100.0 7.1E-31 1.5E-35 195.8 19.4 162 11-222 2-164 (211)
53 KOG0091|consensus 100.0 7.5E-32 1.6E-36 183.4 12.6 166 8-222 5-171 (213)
54 cd01871 Rac1_like Rac1-like su 100.0 9.2E-31 2E-35 189.8 18.9 158 12-222 2-173 (174)
55 cd01861 Rab6 Rab6 subfamily. 100.0 1E-30 2.2E-35 187.4 18.9 160 12-222 1-160 (161)
56 smart00175 RAB Rab subfamily o 100.0 1.1E-30 2.4E-35 187.7 18.8 160 12-222 1-160 (164)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 1E-30 2.2E-35 187.9 18.6 161 11-222 1-161 (163)
58 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.7E-31 1.5E-35 196.1 18.0 158 12-222 2-174 (222)
59 cd04126 Rab20 Rab20 subfamily. 100.0 7.2E-31 1.6E-35 195.8 18.1 155 12-222 1-188 (220)
60 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.6E-30 3.5E-35 186.9 18.9 162 10-222 1-162 (164)
61 cd01860 Rab5_related Rab5-rela 100.0 2E-30 4.4E-35 186.2 19.1 161 11-222 1-161 (163)
62 smart00173 RAS Ras subfamily o 100.0 1.3E-30 2.9E-35 187.4 18.0 159 12-221 1-159 (164)
63 cd04124 RabL2 RabL2 subfamily. 100.0 1.8E-30 3.9E-35 186.2 18.6 156 12-222 1-156 (161)
64 cd04134 Rho3 Rho3 subfamily. 100.0 1.5E-30 3.3E-35 191.2 18.5 157 13-222 2-172 (189)
65 cd01873 RhoBTB RhoBTB subfamil 100.0 1.8E-30 4E-35 190.9 18.5 159 11-223 2-195 (195)
66 KOG0088|consensus 100.0 1.3E-31 2.8E-36 181.4 10.7 164 7-221 9-172 (218)
67 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.2E-30 9.1E-35 185.9 19.4 162 11-222 2-167 (170)
68 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.4E-30 7.3E-35 184.7 18.5 159 12-222 2-160 (162)
69 smart00176 RAN Ran (Ras-relate 100.0 3E-30 6.4E-35 190.2 18.2 152 17-222 1-152 (200)
70 cd04142 RRP22 RRP22 subfamily. 100.0 3.5E-30 7.5E-35 190.1 18.2 163 12-222 1-172 (198)
71 cd01862 Rab7 Rab7 subfamily. 100.0 6.1E-30 1.3E-34 185.3 18.9 164 12-222 1-165 (172)
72 cd04143 Rhes_like Rhes_like su 100.0 3.5E-30 7.5E-35 195.7 18.1 169 12-223 1-170 (247)
73 cd04123 Rab21 Rab21 subfamily. 100.0 8.1E-30 1.8E-34 182.7 19.0 160 12-222 1-160 (162)
74 KOG0097|consensus 100.0 3.3E-30 7.1E-35 171.6 15.3 167 2-219 2-168 (215)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.8E-30 1.5E-34 183.7 18.1 159 12-222 1-162 (164)
76 smart00174 RHO Rho (Ras homolo 100.0 9.8E-30 2.1E-34 184.6 18.2 157 14-222 1-170 (174)
77 cd04132 Rho4_like Rho4-like su 100.0 8.4E-30 1.8E-34 187.1 18.0 158 12-222 1-165 (187)
78 cd04118 Rab24 Rab24 subfamily. 100.0 1.5E-29 3.2E-34 186.7 19.3 159 12-222 1-164 (193)
79 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2E-29 4.4E-34 182.8 19.2 158 12-222 1-172 (173)
80 cd01863 Rab18 Rab18 subfamily. 100.0 2.6E-29 5.5E-34 180.2 19.5 160 12-222 1-160 (161)
81 cd01892 Miro2 Miro2 subfamily. 100.0 1.3E-29 2.7E-34 183.1 17.8 162 9-223 2-165 (169)
82 PLN03118 Rab family protein; P 100.0 2.5E-29 5.5E-34 187.8 19.7 168 4-222 7-175 (211)
83 cd04114 Rab30 Rab30 subfamily. 100.0 3.9E-29 8.5E-34 180.6 19.9 164 8-222 4-167 (169)
84 cd04135 Tc10 TC10 subfamily. 100.0 2.8E-29 6.1E-34 182.2 18.7 160 12-223 1-173 (174)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 3.5E-29 7.5E-34 180.8 18.7 159 12-221 2-161 (168)
86 cd00154 Rab Rab family. Rab G 100.0 2.8E-29 6.1E-34 179.0 18.0 159 12-221 1-159 (159)
87 cd04103 Centaurin_gamma Centau 100.0 5.1E-29 1.1E-33 177.8 18.4 154 12-222 1-157 (158)
88 cd04146 RERG_RasL11_like RERG/ 100.0 2.6E-29 5.6E-34 180.9 16.8 160 13-222 1-162 (165)
89 cd04148 RGK RGK subfamily. Th 100.0 6.6E-29 1.4E-33 186.4 17.7 159 12-222 1-161 (221)
90 cd04139 RalA_RalB RalA/RalB su 100.0 5E-28 1.1E-32 173.8 18.2 159 12-221 1-159 (164)
91 cd01870 RhoA_like RhoA-like su 100.0 5.6E-28 1.2E-32 175.5 18.4 159 12-223 2-174 (175)
92 KOG0081|consensus 100.0 4E-30 8.7E-35 174.2 5.5 166 6-221 4-178 (219)
93 cd00876 Ras Ras family. The R 100.0 6.1E-28 1.3E-32 172.6 16.8 159 13-222 1-159 (160)
94 cd04149 Arf6 Arf6 subfamily. 100.0 2.8E-28 6E-33 175.9 15.0 156 9-221 7-167 (168)
95 cd00157 Rho Rho (Ras homology) 100.0 1.6E-27 3.5E-32 172.4 19.1 159 12-222 1-171 (171)
96 KOG0395|consensus 100.0 5.4E-28 1.2E-32 176.9 15.7 162 10-222 2-163 (196)
97 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.2E-28 2.7E-33 177.1 11.6 152 14-221 2-163 (164)
98 PTZ00132 GTP-binding nuclear p 100.0 3.3E-27 7.1E-32 177.0 19.5 165 4-222 2-166 (215)
99 cd04137 RheB Rheb (Ras Homolog 100.0 2.7E-27 5.8E-32 172.7 17.7 160 12-222 2-161 (180)
100 cd04147 Ras_dva Ras-dva subfam 100.0 2.7E-27 5.8E-32 175.2 16.9 159 13-222 1-161 (198)
101 cd04129 Rho2 Rho2 subfamily. 100.0 6.4E-27 1.4E-31 171.7 18.6 158 12-222 2-171 (187)
102 cd04158 ARD1 ARD1 subfamily. 100.0 1.7E-27 3.6E-32 172.1 15.2 153 13-222 1-159 (169)
103 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.9E-27 4E-32 170.1 15.2 153 12-221 1-158 (159)
104 cd04154 Arl2 Arl2 subfamily. 100.0 2.2E-27 4.7E-32 172.2 14.7 158 7-221 10-172 (173)
105 PLN00223 ADP-ribosylation fact 100.0 2.9E-27 6.2E-32 172.5 14.9 157 9-222 15-176 (181)
106 cd01893 Miro1 Miro1 subfamily. 100.0 6.2E-27 1.3E-31 168.7 16.4 158 12-222 1-162 (166)
107 KOG0083|consensus 100.0 4.3E-29 9.4E-34 164.5 4.6 156 15-221 1-157 (192)
108 smart00177 ARF ARF-like small 100.0 5.5E-27 1.2E-31 170.2 16.1 157 9-222 11-172 (175)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7.4E-27 1.6E-31 170.8 16.5 160 10-222 2-168 (183)
110 KOG0393|consensus 100.0 1.2E-27 2.7E-32 171.3 11.1 162 10-223 3-178 (198)
111 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.7E-26 3.8E-31 170.1 16.3 167 12-210 1-176 (202)
112 PTZ00133 ADP-ribosylation fact 99.9 2.4E-26 5.1E-31 167.8 15.8 157 9-222 15-176 (182)
113 cd04157 Arl6 Arl6 subfamily. 99.9 1.7E-26 3.6E-31 165.6 14.0 155 13-221 1-161 (162)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.3E-26 7.1E-31 166.1 15.2 155 10-221 14-173 (174)
115 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.3E-26 2.7E-31 167.1 11.7 153 13-222 1-167 (167)
116 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.5E-26 1.4E-30 163.4 14.7 153 13-221 1-166 (167)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.8E-26 8.2E-31 163.5 13.3 154 13-222 1-160 (160)
118 KOG4252|consensus 99.9 5.9E-28 1.3E-32 166.9 3.2 169 1-221 10-178 (246)
119 PF00025 Arf: ADP-ribosylation 99.9 3.2E-25 6.8E-30 160.8 17.3 158 8-222 11-174 (175)
120 cd00879 Sar1 Sar1 subfamily. 99.9 1.5E-25 3.2E-30 164.9 15.2 157 9-222 17-189 (190)
121 cd04151 Arl1 Arl1 subfamily. 99.9 1.3E-25 2.7E-30 160.5 14.0 153 13-222 1-158 (158)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.5E-25 3.3E-30 160.1 12.7 152 13-221 1-157 (158)
123 PF02421 FeoB_N: Ferrous iron 99.9 7.8E-25 1.7E-29 153.2 14.9 156 12-219 1-156 (156)
124 smart00178 SAR Sar1p-like memb 99.9 8.7E-25 1.9E-29 159.9 15.2 157 9-222 15-183 (184)
125 PLN00023 GTP-binding protein; 99.9 1.1E-24 2.4E-29 168.0 15.8 150 10-199 20-189 (334)
126 PRK12299 obgE GTPase CgtA; Rev 99.9 1.3E-24 2.9E-29 171.2 16.1 161 12-222 159-326 (335)
127 PTZ00099 rab6; Provisional 99.9 4E-24 8.6E-29 154.8 16.3 138 34-222 3-140 (176)
128 cd01898 Obg Obg subfamily. Th 99.9 1.7E-24 3.6E-29 156.5 14.4 159 13-222 2-169 (170)
129 cd01890 LepA LepA subfamily. 99.9 3.3E-24 7.2E-29 156.2 15.8 153 13-222 2-175 (179)
130 cd04159 Arl10_like Arl10-like 99.9 1.4E-24 3E-29 154.8 12.7 153 14-222 2-159 (159)
131 cd01897 NOG NOG1 is a nucleola 99.9 3.8E-24 8.1E-29 154.4 15.0 154 13-222 2-166 (168)
132 KOG0073|consensus 99.9 1.3E-23 2.8E-28 143.4 14.7 157 8-221 13-175 (185)
133 cd04171 SelB SelB subfamily. 99.9 4.3E-24 9.2E-29 153.3 13.2 154 13-221 2-163 (164)
134 TIGR00231 small_GTP small GTP- 99.9 2.6E-23 5.7E-28 147.9 16.9 158 11-220 1-160 (161)
135 cd01878 HflX HflX subfamily. 99.9 9.2E-24 2E-28 157.1 14.7 157 9-222 39-203 (204)
136 cd04155 Arl3 Arl3 subfamily. 99.9 1.7E-23 3.8E-28 151.6 15.2 153 9-221 12-172 (173)
137 TIGR02528 EutP ethanolamine ut 99.9 3.5E-24 7.5E-29 150.4 11.2 134 13-220 2-141 (142)
138 cd01879 FeoB Ferrous iron tran 99.9 2.6E-23 5.6E-28 148.4 14.8 148 16-223 1-156 (158)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.7E-23 5.8E-28 149.8 13.1 155 13-222 2-164 (168)
140 TIGR02729 Obg_CgtA Obg family 99.9 7.5E-23 1.6E-27 161.2 15.2 160 12-222 158-327 (329)
141 COG1100 GTPase SAR1 and relate 99.9 3.3E-22 7.1E-27 150.3 17.2 161 11-222 5-183 (219)
142 TIGR03156 GTP_HflX GTP-binding 99.9 2E-22 4.3E-27 160.2 16.4 156 9-222 187-350 (351)
143 PRK04213 GTP-binding protein; 99.9 1.8E-23 3.8E-28 155.2 9.8 162 7-222 5-190 (201)
144 KOG0070|consensus 99.9 1.2E-22 2.6E-27 142.2 12.8 158 8-222 14-176 (181)
145 cd00882 Ras_like_GTPase Ras-li 99.9 4.7E-22 1E-26 140.3 15.0 155 16-221 1-157 (157)
146 TIGR00436 era GTP-binding prot 99.9 6.9E-22 1.5E-26 152.8 16.1 152 13-222 2-162 (270)
147 PRK12297 obgE GTPase CgtA; Rev 99.9 1.1E-21 2.3E-26 158.5 17.4 154 13-222 160-325 (424)
148 cd01881 Obg_like The Obg-like 99.9 3.5E-22 7.6E-27 145.0 12.0 162 16-222 1-175 (176)
149 PRK15494 era GTPase Era; Provi 99.9 1.7E-21 3.6E-26 154.7 16.4 154 9-222 50-214 (339)
150 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-22 8.1E-27 147.2 11.8 147 12-213 3-171 (194)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.1E-21 4.6E-26 138.2 14.6 145 12-222 2-155 (157)
152 cd00881 GTP_translation_factor 99.9 1.5E-21 3.2E-26 143.3 13.0 155 13-222 1-185 (189)
153 PRK15467 ethanolamine utilizat 99.9 2.9E-21 6.2E-26 137.7 13.2 137 13-222 3-145 (158)
154 PRK12296 obgE GTPase CgtA; Rev 99.9 5.2E-21 1.1E-25 156.4 16.4 168 12-222 160-338 (500)
155 PRK11058 GTPase HflX; Provisio 99.9 4.5E-21 9.7E-26 155.8 15.9 154 12-222 198-360 (426)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.8E-21 1E-25 156.4 15.7 149 9-222 201-358 (442)
157 cd01894 EngA1 EngA1 subfamily. 99.9 2.2E-21 4.8E-26 138.2 11.7 146 15-222 1-156 (157)
158 PF08477 Miro: Miro-like prote 99.9 5E-21 1.1E-25 130.3 12.8 94 13-106 1-96 (119)
159 TIGR00487 IF-2 translation ini 99.9 8.4E-21 1.8E-25 159.4 16.7 152 11-221 87-247 (587)
160 PRK05291 trmE tRNA modificatio 99.9 4.6E-21 9.9E-26 157.4 14.8 145 11-222 215-368 (449)
161 KOG0071|consensus 99.9 9.6E-21 2.1E-25 126.1 13.3 157 9-222 15-176 (180)
162 cd01889 SelB_euk SelB subfamil 99.9 4.5E-21 9.8E-26 141.3 13.1 156 12-222 1-184 (192)
163 PRK03003 GTP-binding protein D 99.9 2.5E-21 5.3E-26 160.4 12.9 156 10-222 210-380 (472)
164 KOG0096|consensus 99.9 1.5E-21 3.3E-26 136.5 9.7 166 1-221 1-166 (216)
165 cd01896 DRG The developmentall 99.9 5.1E-20 1.1E-24 139.1 18.7 194 13-222 2-224 (233)
166 TIGR01393 lepA GTP-binding pro 99.9 1.2E-20 2.6E-25 159.2 16.6 155 11-222 3-178 (595)
167 PRK03003 GTP-binding protein D 99.9 4.2E-21 9.2E-26 159.0 13.7 151 10-222 37-197 (472)
168 PRK12298 obgE GTPase CgtA; Rev 99.9 9.3E-21 2E-25 152.3 15.2 157 13-222 161-331 (390)
169 KOG3883|consensus 99.9 2.7E-20 5.8E-25 125.8 14.9 161 10-221 8-172 (198)
170 cd01895 EngA2 EngA2 subfamily. 99.9 1.4E-20 3E-25 136.1 13.7 155 11-222 2-173 (174)
171 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-20 2.5E-25 155.4 14.9 156 9-222 170-342 (429)
172 KOG0075|consensus 99.9 4.3E-21 9.3E-26 128.8 9.6 153 11-222 20-180 (186)
173 PRK00454 engB GTP-binding prot 99.9 1.2E-20 2.6E-25 139.5 12.7 163 5-222 18-192 (196)
174 TIGR00437 feoB ferrous iron tr 99.9 2.8E-20 6.2E-25 156.9 16.5 145 18-222 1-153 (591)
175 cd04163 Era Era subfamily. Er 99.9 6.2E-20 1.3E-24 131.7 15.9 156 11-222 3-167 (168)
176 KOG1673|consensus 99.9 1.2E-20 2.7E-25 127.8 11.2 160 9-220 18-182 (205)
177 TIGR03598 GTPase_YsxC ribosome 99.8 1E-20 2.2E-25 137.9 10.8 155 4-213 11-179 (179)
178 PRK09554 feoB ferrous iron tra 99.8 6.5E-20 1.4E-24 158.2 17.6 164 11-222 3-166 (772)
179 PRK00089 era GTPase Era; Revie 99.8 6E-20 1.3E-24 143.8 15.8 157 10-222 4-169 (292)
180 CHL00189 infB translation init 99.8 3E-20 6.4E-25 158.4 14.9 155 10-222 243-408 (742)
181 TIGR00475 selB selenocysteine- 99.8 4.4E-20 9.5E-25 155.7 13.6 154 12-222 1-164 (581)
182 PRK05306 infB translation init 99.8 1.2E-19 2.7E-24 155.9 16.5 152 10-221 289-449 (787)
183 PRK00093 GTP-binding protein D 99.8 1.2E-19 2.5E-24 149.6 15.5 148 12-221 2-159 (435)
184 cd01888 eIF2_gamma eIF2-gamma 99.8 7.8E-20 1.7E-24 135.7 12.3 157 12-222 1-197 (203)
185 COG1159 Era GTPase [General fu 99.8 2.6E-19 5.6E-24 135.0 15.0 164 10-221 5-169 (298)
186 TIGR03594 GTPase_EngA ribosome 99.8 1.3E-19 2.7E-24 149.3 13.6 148 13-222 1-158 (429)
187 cd00880 Era_like Era (E. coli 99.8 4.2E-19 9.1E-24 126.3 14.1 151 16-222 1-162 (163)
188 PF00009 GTP_EFTU: Elongation 99.8 6.8E-20 1.5E-24 134.5 10.2 158 10-222 2-185 (188)
189 cd04105 SR_beta Signal recogni 99.8 3.5E-19 7.5E-24 132.0 13.9 93 13-106 2-96 (203)
190 PRK00093 GTP-binding protein D 99.8 3.4E-19 7.4E-24 146.9 15.3 154 9-221 171-341 (435)
191 PRK05433 GTP-binding protein L 99.8 6.2E-19 1.3E-23 149.0 16.1 157 9-222 5-182 (600)
192 COG0486 ThdF Predicted GTPase 99.8 5.4E-19 1.2E-23 140.7 14.5 159 10-222 216-374 (454)
193 COG1160 Predicted GTPases [Gen 99.8 4.9E-19 1.1E-23 140.6 13.8 157 12-222 4-163 (444)
194 PRK09518 bifunctional cytidyla 99.8 1.1E-18 2.4E-23 150.9 16.4 151 11-222 275-434 (712)
195 TIGR00491 aIF-2 translation in 99.8 8E-19 1.7E-23 147.3 13.6 86 12-97 5-106 (590)
196 KOG0076|consensus 99.8 1.2E-19 2.7E-24 125.2 7.0 156 10-221 16-184 (197)
197 KOG1489|consensus 99.8 1.7E-18 3.7E-23 130.9 13.6 156 13-221 198-364 (366)
198 COG1160 Predicted GTPases [Gen 99.8 1.5E-18 3.3E-23 137.8 13.7 168 10-222 177-349 (444)
199 cd01876 YihA_EngB The YihA (En 99.8 2.2E-18 4.8E-23 123.9 12.9 154 13-223 1-170 (170)
200 COG2262 HflX GTPases [General 99.8 3.6E-18 7.9E-23 133.7 14.7 166 8-222 189-354 (411)
201 KOG4423|consensus 99.8 3.1E-21 6.7E-26 134.5 -2.1 167 9-222 23-192 (229)
202 COG1163 DRG Predicted GTPase [ 99.8 2.1E-17 4.5E-22 125.6 18.2 196 11-222 63-287 (365)
203 PRK09518 bifunctional cytidyla 99.8 3.5E-18 7.6E-23 147.9 16.0 154 10-222 449-619 (712)
204 PRK12317 elongation factor 1-a 99.8 1.6E-18 3.4E-23 142.3 13.2 155 8-214 3-195 (425)
205 COG0370 FeoB Fe2+ transport sy 99.8 5.1E-18 1.1E-22 140.6 15.9 160 11-222 3-162 (653)
206 TIGR00483 EF-1_alpha translati 99.8 1.3E-18 2.7E-23 142.8 11.8 157 7-214 3-197 (426)
207 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.4E-18 9.6E-23 125.0 12.9 157 10-221 1-190 (195)
208 COG0218 Predicted GTPase [Gene 99.8 1.7E-17 3.7E-22 118.8 14.9 173 4-222 17-195 (200)
209 KOG0074|consensus 99.8 3.8E-18 8.2E-23 114.0 10.6 157 9-221 15-176 (185)
210 PRK10218 GTP-binding protein; 99.8 1.6E-17 3.5E-22 139.9 17.0 158 10-222 4-193 (607)
211 KOG1423|consensus 99.8 1.5E-17 3.2E-22 125.3 14.7 178 2-222 63-269 (379)
212 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.7E-18 3.6E-23 129.0 9.6 148 13-214 1-184 (208)
213 COG2229 Predicted GTPase [Gene 99.8 2.9E-17 6.2E-22 115.1 15.0 155 10-221 9-175 (187)
214 PF10662 PduV-EutP: Ethanolami 99.8 6.8E-18 1.5E-22 115.7 11.3 135 13-220 3-142 (143)
215 KOG0072|consensus 99.8 9.2E-19 2E-23 117.2 5.5 156 10-222 17-177 (182)
216 cd04168 TetM_like Tet(M)-like 99.8 3.8E-17 8.3E-22 123.6 14.8 87 13-99 1-103 (237)
217 TIGR01394 TypA_BipA GTP-bindin 99.8 1.4E-17 3.1E-22 140.4 13.5 156 12-222 2-189 (594)
218 PRK10512 selenocysteinyl-tRNA- 99.8 1.7E-17 3.7E-22 140.5 13.6 154 13-222 2-164 (614)
219 cd01899 Ygr210 Ygr210 subfamil 99.7 5.1E-17 1.1E-21 127.3 14.4 82 14-95 1-111 (318)
220 PRK04004 translation initiatio 99.7 3.2E-17 6.9E-22 138.2 14.1 86 11-96 6-107 (586)
221 TIGR03680 eif2g_arch translati 99.7 1.9E-17 4.1E-22 134.8 12.3 160 9-221 2-193 (406)
222 KOG1707|consensus 99.7 8.7E-18 1.9E-22 136.1 9.4 168 3-222 1-173 (625)
223 PRK04000 translation initiatio 99.7 2.9E-17 6.3E-22 133.7 12.4 163 6-222 4-199 (411)
224 PRK12736 elongation factor Tu; 99.7 5E-17 1.1E-21 131.8 13.1 161 6-221 7-198 (394)
225 PRK12735 elongation factor Tu; 99.7 7.3E-17 1.6E-21 131.0 13.5 166 1-221 1-200 (396)
226 COG1084 Predicted GTPase [Gene 99.7 9.3E-17 2E-21 122.4 13.0 167 8-222 165-334 (346)
227 cd04167 Snu114p Snu114p subfam 99.7 7.9E-17 1.7E-21 120.5 12.2 87 13-99 2-110 (213)
228 TIGR00485 EF-Tu translation el 99.7 7.5E-17 1.6E-21 131.0 12.4 160 6-220 7-197 (394)
229 COG0536 Obg Predicted GTPase [ 99.7 7.6E-17 1.6E-21 123.4 11.3 160 13-222 161-331 (369)
230 cd01883 EF1_alpha Eukaryotic e 99.7 6.1E-17 1.3E-21 121.5 9.0 84 13-96 1-113 (219)
231 PRK09602 translation-associate 99.7 6.9E-16 1.5E-20 124.4 14.1 84 12-95 2-114 (396)
232 CHL00071 tufA elongation facto 99.7 5E-16 1.1E-20 126.6 13.4 149 8-211 9-180 (409)
233 cd04104 p47_IIGP_like p47 (47- 99.7 9.2E-16 2E-20 113.3 13.6 154 11-222 1-182 (197)
234 cd04165 GTPBP1_like GTPBP1-lik 99.7 6E-16 1.3E-20 116.1 12.4 26 13-38 1-26 (224)
235 cd04169 RF3 RF3 subfamily. Pe 99.7 1.3E-15 2.8E-20 117.2 14.4 86 12-97 3-108 (267)
236 cd04170 EF-G_bact Elongation f 99.7 3.8E-16 8.1E-21 120.8 8.7 88 13-100 1-104 (268)
237 PRK00049 elongation factor Tu; 99.7 2.4E-15 5.3E-20 122.1 13.6 159 8-221 9-200 (396)
238 cd01886 EF-G Elongation factor 99.7 8.2E-16 1.8E-20 118.4 10.2 85 13-97 1-101 (270)
239 cd01885 EF2 EF2 (for archaea a 99.6 2.9E-15 6.3E-20 111.9 12.2 88 13-100 2-113 (222)
240 PLN03126 Elongation factor Tu; 99.6 3.4E-15 7.3E-20 123.1 13.7 149 7-210 77-248 (478)
241 PLN00043 elongation factor 1-a 99.6 4.8E-15 1E-19 121.7 14.3 158 7-213 3-202 (447)
242 COG3596 Predicted GTPase [Gene 99.6 7E-16 1.5E-20 115.1 8.5 171 5-222 33-220 (296)
243 PRK05124 cysN sulfate adenylyl 99.6 1E-15 2.2E-20 126.5 10.4 90 7-96 23-143 (474)
244 cd01850 CDC_Septin CDC/Septin. 99.6 2.9E-15 6.4E-20 115.8 12.2 169 11-208 4-186 (276)
245 COG0532 InfB Translation initi 99.6 5.8E-15 1.3E-19 119.4 13.7 152 11-222 5-168 (509)
246 PRK00741 prfC peptide chain re 99.6 1.1E-14 2.3E-19 121.6 15.7 90 8-97 7-116 (526)
247 PRK05506 bifunctional sulfate 99.6 2.2E-15 4.7E-20 129.2 11.6 155 6-214 19-211 (632)
248 KOG0462|consensus 99.6 9.9E-15 2.2E-19 117.8 12.8 162 6-222 55-233 (650)
249 KOG0077|consensus 99.6 1.5E-15 3.2E-20 104.4 6.9 157 9-222 18-191 (193)
250 PTZ00141 elongation factor 1- 99.6 1.2E-14 2.7E-19 119.3 13.6 89 8-96 4-121 (446)
251 TIGR02034 CysN sulfate adenyly 99.6 5.5E-15 1.2E-19 120.4 11.4 149 12-214 1-187 (406)
252 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 1.8E-14 3.8E-19 107.7 13.1 158 13-222 1-174 (232)
253 PLN03127 Elongation factor Tu; 99.6 1.3E-14 2.7E-19 119.1 13.4 91 6-96 56-160 (447)
254 KOG1191|consensus 99.6 1E-14 2.3E-19 116.4 11.5 62 10-72 267-328 (531)
255 PF01926 MMR_HSR1: 50S ribosom 99.6 4E-14 8.6E-19 95.7 12.8 57 13-71 1-58 (116)
256 PRK13351 elongation factor G; 99.6 2.3E-14 4.9E-19 124.2 14.5 95 9-103 6-116 (687)
257 KOG1532|consensus 99.6 1.4E-14 3E-19 107.9 9.4 201 10-222 18-262 (366)
258 PTZ00258 GTP-binding protein; 99.6 7.9E-14 1.7E-18 111.5 14.3 86 9-94 19-126 (390)
259 KOG1145|consensus 99.6 4.2E-14 9.1E-19 114.3 12.6 152 11-221 153-313 (683)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 8.8E-14 1.9E-18 102.7 13.6 166 12-222 1-182 (196)
261 TIGR00484 EF-G translation elo 99.6 7.3E-14 1.6E-18 120.9 13.7 92 8-99 7-114 (689)
262 COG0012 Predicted GTPase, prob 99.6 9.7E-15 2.1E-19 113.9 7.0 85 11-95 2-109 (372)
263 KOG1490|consensus 99.5 2.9E-14 6.2E-19 114.1 9.4 171 5-221 162-338 (620)
264 PRK12739 elongation factor G; 99.5 1.7E-13 3.7E-18 118.6 14.5 90 9-98 6-111 (691)
265 PF09439 SRPRB: Signal recogni 99.5 6.9E-14 1.5E-18 100.3 9.9 80 12-95 4-87 (181)
266 PRK09866 hypothetical protein; 99.5 1.5E-13 3.3E-18 114.2 12.8 103 117-221 230-350 (741)
267 KOG3905|consensus 99.5 4E-13 8.7E-18 102.4 13.5 206 12-221 53-287 (473)
268 COG4917 EutP Ethanolamine util 99.5 2E-13 4.3E-18 89.7 10.2 140 13-221 3-143 (148)
269 PTZ00327 eukaryotic translatio 99.5 1.2E-13 2.6E-18 113.3 11.5 160 8-221 31-230 (460)
270 PF03308 ArgK: ArgK protein; 99.5 2E-13 4.3E-18 101.9 11.4 183 10-221 28-227 (266)
271 COG0481 LepA Membrane GTPase L 99.5 6.8E-13 1.5E-17 105.8 14.8 157 8-222 6-184 (603)
272 TIGR00503 prfC peptide chain r 99.5 2.6E-13 5.6E-18 113.4 13.1 90 7-96 7-116 (527)
273 PRK09601 GTP-binding protein Y 99.5 2E-14 4.3E-19 113.6 5.1 84 12-95 3-108 (364)
274 COG1703 ArgK Putative periplas 99.5 1.4E-12 3E-17 98.8 13.3 185 10-221 50-251 (323)
275 cd01900 YchF YchF subfamily. 99.5 1.7E-14 3.6E-19 110.6 2.7 82 14-95 1-104 (274)
276 PRK00007 elongation factor G; 99.5 7E-13 1.5E-17 114.8 13.0 89 8-96 7-111 (693)
277 COG0378 HypB Ni2+-binding GTPa 99.5 8.5E-13 1.8E-17 94.1 10.9 179 11-222 13-199 (202)
278 KOG0090|consensus 99.5 2.3E-13 5E-18 97.8 8.0 79 12-95 39-120 (238)
279 COG5256 TEF1 Translation elong 99.5 5.5E-13 1.2E-17 104.9 10.8 90 8-97 4-122 (428)
280 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.7E-12 3.7E-17 100.3 13.1 66 6-73 33-99 (313)
281 PF05783 DLIC: Dynein light in 99.5 2.8E-13 6E-18 110.9 8.6 208 9-222 23-262 (472)
282 PRK12740 elongation factor G; 99.4 2.5E-12 5.4E-17 111.4 13.3 86 17-102 1-102 (668)
283 cd01853 Toc34_like Toc34-like 99.4 3.3E-12 7.1E-17 97.2 12.1 67 6-73 26-92 (249)
284 PRK14845 translation initiatio 99.4 5.7E-12 1.2E-16 111.5 14.3 74 23-96 473-562 (1049)
285 TIGR00101 ureG urease accessor 99.4 1.9E-11 4.2E-16 90.1 14.8 80 135-222 113-194 (199)
286 PRK09435 membrane ATPase/prote 99.4 1.7E-11 3.7E-16 96.5 14.9 188 9-222 54-258 (332)
287 TIGR00073 hypB hydrogenase acc 99.4 3.7E-11 8E-16 89.5 15.7 99 116-222 102-205 (207)
288 TIGR00490 aEF-2 translation el 99.4 2.1E-12 4.6E-17 112.2 10.2 88 9-96 17-122 (720)
289 KOG1486|consensus 99.4 1.3E-10 2.8E-15 86.0 17.5 193 12-221 63-285 (364)
290 KOG1144|consensus 99.4 2.6E-12 5.5E-17 107.3 9.4 86 11-96 475-576 (1064)
291 KOG1707|consensus 99.4 1.9E-11 4.1E-16 99.9 14.0 161 7-223 421-582 (625)
292 PF03029 ATP_bind_1: Conserved 99.4 3.8E-13 8.3E-18 101.6 3.5 57 166-222 155-235 (238)
293 PRK13768 GTPase; Provisional 99.4 7E-12 1.5E-16 95.9 10.2 86 135-222 129-245 (253)
294 PF04548 AIG1: AIG1 family; I 99.3 2.8E-11 6.1E-16 90.3 11.8 81 12-94 1-94 (212)
295 PRK10463 hydrogenase nickel in 99.3 1E-10 2.2E-15 89.9 14.5 55 167-221 230-286 (290)
296 KOG0458|consensus 99.3 2.6E-11 5.6E-16 99.1 11.4 153 10-215 176-373 (603)
297 COG1217 TypA Predicted membran 99.3 7.6E-11 1.6E-15 94.1 12.5 157 10-221 4-192 (603)
298 smart00010 small_GTPase Small 99.3 2E-11 4.4E-16 83.2 8.3 114 12-213 1-115 (124)
299 TIGR00157 ribosome small subun 99.3 1.8E-11 4E-16 93.1 8.7 96 71-221 24-120 (245)
300 KOG0410|consensus 99.3 1.1E-11 2.4E-16 94.6 7.1 157 10-220 177-337 (410)
301 PF05049 IIGP: Interferon-indu 99.3 7.2E-11 1.6E-15 93.7 11.9 84 8-92 32-123 (376)
302 PRK07560 elongation factor EF- 99.3 8E-11 1.7E-15 102.7 12.9 89 9-97 18-124 (731)
303 cd01882 BMS1 Bms1. Bms1 is an 99.3 7.7E-11 1.7E-15 88.7 11.0 80 8-95 36-115 (225)
304 PLN00116 translation elongatio 99.3 1.4E-11 3E-16 108.7 8.0 91 8-98 16-136 (843)
305 PTZ00416 elongation factor 2; 99.3 3.3E-11 7.1E-16 106.3 9.9 90 9-98 17-130 (836)
306 TIGR00750 lao LAO/AO transport 99.2 1.8E-10 3.9E-15 90.5 12.7 99 115-221 125-235 (300)
307 PF00735 Septin: Septin; Inte 99.2 1.8E-09 3.9E-14 83.7 17.6 161 11-204 4-181 (281)
308 COG2895 CysN GTPases - Sulfate 99.2 1.4E-10 3.1E-15 89.6 11.1 152 8-213 3-192 (431)
309 KOG1487|consensus 99.2 2.1E-10 4.5E-15 85.2 10.2 192 12-221 60-278 (358)
310 TIGR02836 spore_IV_A stage IV 99.2 3.5E-10 7.6E-15 90.0 11.4 185 10-220 16-233 (492)
311 cd00066 G-alpha G protein alph 99.2 1.2E-09 2.7E-14 86.3 14.4 39 58-96 159-197 (317)
312 KOG1491|consensus 99.1 7.3E-11 1.6E-15 90.7 4.2 87 10-96 19-127 (391)
313 COG4108 PrfC Peptide chain rel 99.1 1.6E-09 3.5E-14 86.1 10.9 93 10-102 11-123 (528)
314 smart00053 DYNc Dynamin, GTPas 99.1 3.8E-09 8.3E-14 79.7 12.2 45 134-181 162-206 (240)
315 smart00275 G_alpha G protein a 99.1 5.4E-09 1.2E-13 83.4 13.7 39 59-97 183-221 (342)
316 COG0480 FusA Translation elong 99.0 4.5E-09 9.8E-14 90.1 13.2 96 8-103 7-119 (697)
317 PF00350 Dynamin_N: Dynamin fa 99.0 7.6E-09 1.6E-13 74.4 12.5 46 129-177 123-168 (168)
318 TIGR00993 3a0901s04IAP86 chlor 99.0 8E-09 1.7E-13 86.9 13.3 62 9-72 116-178 (763)
319 TIGR00092 GTP-binding protein 99.0 1.2E-09 2.6E-14 86.8 8.2 84 12-95 3-109 (368)
320 KOG0461|consensus 99.0 1.2E-08 2.6E-13 79.0 11.8 84 10-96 6-106 (522)
321 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.7E-09 1E-13 74.7 7.1 56 10-69 101-156 (157)
322 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.4E-09 7.4E-14 74.0 6.2 54 13-70 85-138 (141)
323 COG3276 SelB Selenocysteine-sp 98.9 8.3E-09 1.8E-13 82.3 8.7 150 13-222 2-160 (447)
324 COG5019 CDC3 Septin family pro 98.9 1E-07 2.2E-12 74.7 14.2 160 11-203 23-200 (373)
325 cd04178 Nucleostemin_like Nucl 98.9 4.8E-09 1E-13 75.5 6.4 55 11-69 117-171 (172)
326 COG5257 GCD11 Translation init 98.8 3.3E-08 7.3E-13 75.9 9.4 86 135-222 110-200 (415)
327 KOG0468|consensus 98.8 3.8E-08 8.2E-13 82.1 10.1 91 9-99 126-236 (971)
328 COG0050 TufB GTPases - transla 98.8 3.6E-08 7.9E-13 74.8 9.1 89 7-95 8-110 (394)
329 KOG2655|consensus 98.8 1E-07 2.3E-12 75.0 11.9 166 11-205 21-198 (366)
330 KOG3886|consensus 98.8 8.7E-09 1.9E-13 75.4 5.4 92 11-103 4-101 (295)
331 KOG0082|consensus 98.8 3.1E-08 6.8E-13 77.9 8.6 44 55-98 190-233 (354)
332 KOG2486|consensus 98.8 1.7E-08 3.6E-13 76.0 6.4 58 9-69 134-192 (320)
333 cd01856 YlqF YlqF. Proteins o 98.8 2.1E-08 4.6E-13 72.4 6.8 58 9-70 113-170 (171)
334 KOG1954|consensus 98.8 1.2E-07 2.6E-12 74.2 11.0 48 5-52 52-100 (532)
335 KOG1547|consensus 98.8 2.6E-07 5.7E-12 68.3 12.1 162 11-209 46-228 (336)
336 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.1E-08 6.7E-13 77.4 7.7 59 9-71 119-177 (287)
337 TIGR03596 GTPase_YlqF ribosome 98.7 2.9E-08 6.2E-13 77.2 7.0 57 10-70 117-173 (276)
338 cd01855 YqeH YqeH. YqeH is an 98.7 2.2E-08 4.7E-13 73.6 5.8 56 11-69 127-189 (190)
339 cd01855 YqeH YqeH. YqeH is an 98.7 5.7E-08 1.2E-12 71.4 8.0 87 129-222 29-123 (190)
340 cd01859 MJ1464 MJ1464. This f 98.7 2.4E-08 5.2E-13 71.0 5.3 86 131-222 9-94 (156)
341 cd01859 MJ1464 MJ1464. This f 98.7 5E-08 1.1E-12 69.3 6.7 56 10-69 100-155 (156)
342 COG1161 Predicted GTPases [Gen 98.7 3.5E-08 7.7E-13 78.1 6.4 58 10-71 131-188 (322)
343 cd01854 YjeQ_engC YjeQ/EngC. 98.7 9.6E-08 2.1E-12 74.6 7.5 87 129-220 73-160 (287)
344 PRK12289 GTPase RsgA; Reviewed 98.7 9.1E-08 2E-12 76.4 7.4 87 129-220 84-171 (352)
345 KOG0464|consensus 98.7 6.2E-08 1.3E-12 76.9 6.2 94 10-103 36-145 (753)
346 KOG0705|consensus 98.6 1.2E-07 2.6E-12 77.6 7.8 156 9-221 28-186 (749)
347 COG1618 Predicted nucleotide k 98.6 1.2E-05 2.6E-10 56.1 15.5 57 9-68 3-59 (179)
348 PRK00098 GTPase RsgA; Reviewed 98.6 1.8E-07 3.8E-12 73.5 7.3 85 132-220 78-163 (298)
349 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.6E-07 3.4E-12 66.9 6.4 88 131-221 5-92 (157)
350 cd01849 YlqF_related_GTPase Yl 98.6 1.7E-07 3.8E-12 66.5 6.5 55 10-69 99-154 (155)
351 PF03193 DUF258: Protein of un 98.6 6.7E-08 1.5E-12 68.2 4.0 59 12-73 36-100 (161)
352 PRK12288 GTPase RsgA; Reviewed 98.6 2.8E-07 6.1E-12 73.6 8.0 86 133-221 119-205 (347)
353 TIGR03597 GTPase_YqeH ribosome 98.6 2.5E-07 5.3E-12 74.6 7.5 54 167-221 90-150 (360)
354 PRK12288 GTPase RsgA; Reviewed 98.5 1.9E-07 4.1E-12 74.5 6.3 58 14-74 208-271 (347)
355 cd01849 YlqF_related_GTPase Yl 98.5 3E-07 6.4E-12 65.3 6.7 82 136-221 1-82 (155)
356 KOG0448|consensus 98.5 1.6E-06 3.4E-11 72.9 11.2 32 10-41 108-139 (749)
357 COG5258 GTPBP1 GTPase [General 98.5 7.6E-07 1.7E-11 70.2 8.8 185 8-220 114-335 (527)
358 PRK12289 GTPase RsgA; Reviewed 98.5 3.1E-07 6.7E-12 73.4 5.8 57 13-73 174-237 (352)
359 KOG3887|consensus 98.4 1.2E-06 2.7E-11 64.9 7.3 83 12-95 28-113 (347)
360 PRK13796 GTPase YqeH; Provisio 98.4 5.3E-07 1.1E-11 72.8 5.8 57 12-71 161-221 (365)
361 TIGR00157 ribosome small subun 98.4 7.5E-07 1.6E-11 68.0 6.2 56 13-72 122-183 (245)
362 COG5192 BMS1 GTP-binding prote 98.4 4.3E-06 9.3E-11 69.2 10.8 83 5-95 63-145 (1077)
363 cd01851 GBP Guanylate-binding 98.4 3.6E-06 7.8E-11 63.4 9.7 86 9-95 5-103 (224)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.1E-06 2.4E-11 61.3 6.1 75 131-211 8-84 (141)
365 TIGR03597 GTPase_YqeH ribosome 98.4 1E-06 2.2E-11 71.0 6.6 57 12-71 155-215 (360)
366 KOG1143|consensus 98.4 1.1E-07 2.4E-12 74.5 0.9 35 6-40 162-196 (591)
367 COG1162 Predicted GTPases [Gen 98.4 8.4E-07 1.8E-11 68.4 5.6 59 13-74 166-230 (301)
368 KOG1424|consensus 98.3 8.1E-07 1.8E-11 72.4 5.1 56 11-70 314-369 (562)
369 KOG4273|consensus 98.3 1.5E-05 3.2E-10 59.6 11.2 96 12-107 5-102 (418)
370 TIGR03348 VI_IcmF type VI secr 98.3 5.1E-06 1.1E-10 76.5 10.3 129 14-181 114-257 (1169)
371 cd01856 YlqF YlqF. Proteins o 98.3 2.1E-06 4.6E-11 61.9 6.4 83 131-221 16-98 (171)
372 TIGR03596 GTPase_YlqF ribosome 98.3 2.4E-06 5.3E-11 66.4 7.0 84 131-222 18-101 (276)
373 PRK10416 signal recognition pa 98.3 4.4E-05 9.5E-10 60.5 13.7 70 134-215 232-301 (318)
374 COG0523 Putative GTPases (G3E 98.3 1.7E-05 3.7E-10 62.7 11.0 176 14-216 4-193 (323)
375 PRK14974 cell division protein 98.2 2.8E-05 6.1E-10 61.8 11.9 71 134-216 252-322 (336)
376 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.9E-06 6.2E-11 66.4 6.2 59 12-73 162-226 (287)
377 PRK00098 GTPase RsgA; Reviewed 98.2 2.9E-06 6.3E-11 66.7 6.3 57 13-72 166-228 (298)
378 KOG0465|consensus 98.2 4.7E-06 1E-10 69.3 7.3 97 9-105 37-149 (721)
379 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.4E-06 9.5E-11 65.4 6.8 84 131-222 21-104 (287)
380 TIGR00064 ftsY signal recognit 98.2 0.00011 2.5E-09 56.9 14.1 70 134-215 190-259 (272)
381 KOG0467|consensus 98.1 9.2E-06 2E-10 69.2 7.7 95 5-99 3-111 (887)
382 PF09547 Spore_IV_A: Stage IV 98.1 3.7E-05 8E-10 61.9 10.3 82 137-220 148-233 (492)
383 PRK13796 GTPase YqeH; Provisio 98.1 1.7E-05 3.8E-10 64.1 8.3 79 136-221 71-156 (365)
384 cd03112 CobW_like The function 98.1 1.5E-05 3.2E-10 56.7 6.9 22 14-35 3-24 (158)
385 PRK01889 GTPase RsgA; Reviewed 98.1 1.3E-05 2.8E-10 64.6 7.2 83 132-220 110-193 (356)
386 cd03114 ArgK-like The function 98.1 5.8E-05 1.2E-09 53.1 9.6 21 14-34 2-22 (148)
387 PF02492 cobW: CobW/HypB/UreG, 98.1 0.00021 4.5E-09 51.9 12.7 59 133-197 112-170 (178)
388 KOG2484|consensus 98.0 5.1E-06 1.1E-10 65.9 3.5 58 9-70 250-307 (435)
389 PRK13695 putative NTPase; Prov 98.0 0.00019 4.1E-09 51.9 11.5 55 157-221 116-170 (174)
390 KOG0463|consensus 98.0 6.1E-05 1.3E-09 59.6 9.3 26 11-36 133-158 (641)
391 KOG0447|consensus 98.0 0.00036 7.8E-09 58.0 13.2 63 131-196 445-508 (980)
392 PF00448 SRP54: SRP54-type pro 98.0 0.00015 3.3E-09 53.4 10.3 24 12-35 2-25 (196)
393 KOG2485|consensus 97.9 1.6E-05 3.4E-10 61.3 4.9 62 8-70 140-206 (335)
394 TIGR01425 SRP54_euk signal rec 97.9 0.00012 2.7E-09 59.9 10.3 23 11-33 100-122 (429)
395 KOG0460|consensus 97.9 4.2E-05 9.2E-10 59.7 6.9 89 7-95 50-152 (449)
396 KOG3859|consensus 97.9 3.9E-05 8.4E-10 58.3 5.8 61 11-71 42-106 (406)
397 PRK00771 signal recognition pa 97.8 0.00029 6.3E-09 58.1 11.2 25 10-34 94-118 (437)
398 KOG1534|consensus 97.8 3.3E-05 7.2E-10 56.3 4.9 23 12-34 4-26 (273)
399 cd03115 SRP The signal recogni 97.8 0.00083 1.8E-08 48.4 12.4 22 13-34 2-23 (173)
400 PF03266 NTPase_1: NTPase; In 97.8 7.5E-05 1.6E-09 53.6 6.0 52 13-67 1-52 (168)
401 COG3523 IcmF Type VI protein s 97.8 7.8E-05 1.7E-09 67.7 6.9 49 133-181 213-270 (1188)
402 PF13207 AAA_17: AAA domain; P 97.7 3.3E-05 7.1E-10 52.2 3.2 22 13-34 1-22 (121)
403 PRK11537 putative GTP-binding 97.7 0.00081 1.8E-08 53.4 11.1 22 13-34 6-27 (318)
404 KOG0466|consensus 97.7 6.5E-05 1.4E-09 57.9 4.6 55 168-222 180-239 (466)
405 PRK11889 flhF flagellar biosyn 97.7 0.0018 3.8E-08 52.5 12.5 24 11-34 241-264 (436)
406 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00012 2.5E-09 41.9 4.1 44 134-178 13-58 (58)
407 COG3640 CooC CO dehydrogenase 97.6 0.0067 1.5E-07 45.4 14.0 93 83-180 96-198 (255)
408 KOG3929|consensus 97.6 2.3E-05 4.9E-10 58.9 1.0 185 8-221 42-249 (363)
409 PF13555 AAA_29: P-loop contai 97.6 7.9E-05 1.7E-09 43.7 3.0 24 13-36 25-48 (62)
410 PRK12727 flagellar biosynthesi 97.6 0.0019 4.1E-08 54.3 12.0 24 11-34 350-373 (559)
411 PRK08118 topology modulation p 97.6 7E-05 1.5E-09 53.8 3.2 22 13-34 3-24 (167)
412 PRK07261 topology modulation p 97.5 7.5E-05 1.6E-09 53.9 3.2 22 13-34 2-23 (171)
413 COG0563 Adk Adenylate kinase a 97.5 9.3E-05 2E-09 53.6 3.2 22 13-34 2-23 (178)
414 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.6E-09 44.3 3.0 22 14-35 2-23 (69)
415 COG1116 TauB ABC-type nitrate/ 97.5 9E-05 1.9E-09 55.7 2.9 24 13-36 31-54 (248)
416 KOG0085|consensus 97.5 5.3E-05 1.2E-09 56.1 1.7 23 10-32 38-60 (359)
417 PF00503 G-alpha: G-protein al 97.4 0.00032 6.9E-09 57.4 6.0 40 58-97 234-273 (389)
418 PF13671 AAA_33: AAA domain; P 97.4 0.00011 2.4E-09 51.1 2.9 21 14-34 2-22 (143)
419 PRK10867 signal recognition pa 97.4 0.0022 4.7E-08 52.9 10.7 24 10-33 99-122 (433)
420 PF13521 AAA_28: AAA domain; P 97.4 0.0001 2.2E-09 52.7 2.6 22 13-34 1-22 (163)
421 COG1162 Predicted GTPases [Gen 97.4 0.00089 1.9E-08 52.0 7.7 85 133-220 78-163 (301)
422 COG1419 FlhF Flagellar GTP-bin 97.4 0.0023 4.9E-08 51.7 10.2 26 11-36 203-228 (407)
423 KOG0459|consensus 97.4 0.0002 4.3E-09 57.2 4.1 86 9-94 77-191 (501)
424 KOG2423|consensus 97.4 8.3E-05 1.8E-09 59.2 1.9 59 7-69 303-361 (572)
425 PF00005 ABC_tran: ABC transpo 97.4 0.00015 3.3E-09 50.1 3.0 25 12-36 12-36 (137)
426 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00073 1.6E-08 46.3 6.1 24 12-35 23-46 (133)
427 COG1136 SalX ABC-type antimicr 97.4 0.00015 3.3E-09 54.1 2.9 24 13-36 33-56 (226)
428 COG0194 Gmk Guanylate kinase [ 97.4 0.00012 2.7E-09 52.5 2.3 24 12-35 5-28 (191)
429 PF07015 VirC1: VirC1 protein; 97.3 0.002 4.3E-08 48.2 8.6 172 17-217 8-187 (231)
430 COG1126 GlnQ ABC-type polar am 97.3 0.00024 5.2E-09 52.3 3.7 24 13-36 30-53 (240)
431 PF03215 Rad17: Rad17 cell cyc 97.3 0.0015 3.2E-08 55.2 8.8 23 13-35 47-69 (519)
432 PRK05703 flhF flagellar biosyn 97.3 0.002 4.4E-08 53.2 9.4 23 12-34 222-244 (424)
433 COG1936 Predicted nucleotide k 97.3 0.00018 4E-09 50.9 2.9 20 13-32 2-21 (180)
434 PRK01889 GTPase RsgA; Reviewed 97.3 0.00027 5.9E-09 57.0 4.2 25 12-36 196-220 (356)
435 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 48.8 2.9 21 14-34 1-21 (129)
436 PRK05480 uridine/cytidine kina 97.3 0.00027 5.9E-09 52.7 3.7 26 9-34 4-29 (209)
437 TIGR00235 udk uridine kinase. 97.3 0.0003 6.6E-09 52.3 3.9 26 9-34 4-29 (207)
438 TIGR02475 CobW cobalamin biosy 97.3 0.0038 8.3E-08 50.1 10.2 21 14-34 7-27 (341)
439 KOG1970|consensus 97.3 0.0012 2.6E-08 55.0 7.3 83 138-220 197-280 (634)
440 PRK06217 hypothetical protein; 97.3 0.00026 5.7E-09 51.6 3.2 23 12-34 2-24 (183)
441 PRK12726 flagellar biosynthesi 97.2 0.016 3.4E-07 47.0 13.1 24 11-34 206-229 (407)
442 smart00382 AAA ATPases associa 97.2 0.00033 7.1E-09 48.1 3.3 26 12-37 3-28 (148)
443 PRK10078 ribose 1,5-bisphospho 97.2 0.00031 6.8E-09 51.4 3.2 22 13-34 4-25 (186)
444 PRK03839 putative kinase; Prov 97.2 0.00032 6.9E-09 51.0 3.2 22 13-34 2-23 (180)
445 PF03205 MobB: Molybdopterin g 97.2 0.00033 7.3E-09 48.7 3.2 24 13-36 2-25 (140)
446 cd00071 GMPK Guanosine monopho 97.2 0.00032 6.9E-09 48.6 3.0 21 14-34 2-22 (137)
447 PRK14530 adenylate kinase; Pro 97.2 0.00033 7.1E-09 52.5 3.2 22 13-34 5-26 (215)
448 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00033 7.2E-09 46.0 2.8 21 12-32 16-36 (107)
449 TIGR02322 phosphon_PhnN phosph 97.2 0.00032 7E-09 50.9 3.0 22 13-34 3-24 (179)
450 PF00004 AAA: ATPase family as 97.2 0.00035 7.5E-09 47.7 3.0 22 14-35 1-22 (132)
451 COG3840 ThiQ ABC-type thiamine 97.2 0.00044 9.6E-09 49.6 3.5 24 13-36 27-50 (231)
452 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0049 1.1E-07 39.3 8.3 68 14-95 2-70 (99)
453 PRK14738 gmk guanylate kinase; 97.2 0.00062 1.4E-08 50.6 4.5 25 11-35 13-37 (206)
454 cd02023 UMPK Uridine monophosp 97.2 0.00034 7.3E-09 51.7 3.0 22 14-35 2-23 (198)
455 KOG3347|consensus 97.2 0.00028 6.1E-09 48.7 2.3 25 9-33 5-29 (176)
456 TIGR00959 ffh signal recogniti 97.2 0.0039 8.4E-08 51.5 9.2 24 11-34 99-122 (428)
457 PRK10751 molybdopterin-guanine 97.1 0.00056 1.2E-08 49.2 3.7 25 11-35 6-30 (173)
458 COG3638 ABC-type phosphate/pho 97.1 0.00038 8.3E-09 51.9 2.9 21 13-33 32-52 (258)
459 PRK10646 ADP-binding protein; 97.1 0.0028 6E-08 44.5 7.0 23 13-35 30-52 (153)
460 cd01130 VirB11-like_ATPase Typ 97.1 0.00045 9.7E-09 50.5 3.2 24 12-35 26-49 (186)
461 cd03238 ABC_UvrA The excision 97.1 0.00044 9.5E-09 50.1 3.1 21 12-32 22-42 (176)
462 PRK14737 gmk guanylate kinase; 97.1 0.00045 9.7E-09 50.5 3.2 24 12-35 5-28 (186)
463 PRK13949 shikimate kinase; Pro 97.1 0.00047 1E-08 49.6 3.2 22 13-34 3-24 (169)
464 COG1120 FepC ABC-type cobalami 97.1 0.0004 8.6E-09 53.0 2.9 49 131-179 152-201 (258)
465 cd03222 ABC_RNaseL_inhibitor T 97.1 0.00044 9.6E-09 50.1 3.0 25 11-35 25-49 (177)
466 COG1117 PstB ABC-type phosphat 97.1 0.00039 8.4E-09 51.2 2.6 22 13-34 35-56 (253)
467 TIGR03263 guanyl_kin guanylate 97.1 0.00043 9.3E-09 50.2 3.0 23 13-35 3-25 (180)
468 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00042 9.2E-09 50.6 3.0 23 12-34 4-26 (188)
469 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00047 1E-08 51.7 3.2 23 13-35 32-54 (218)
470 cd02025 PanK Pantothenate kina 97.1 0.00046 9.9E-09 51.9 2.9 22 14-35 2-23 (220)
471 PRK08233 hypothetical protein; 97.1 0.00058 1.3E-08 49.6 3.4 24 11-34 3-26 (182)
472 PF04665 Pox_A32: Poxvirus A32 97.1 0.00052 1.1E-08 51.9 3.1 27 9-35 11-37 (241)
473 PRK09270 nucleoside triphospha 97.1 0.00062 1.4E-08 51.5 3.6 29 8-36 30-58 (229)
474 COG3839 MalK ABC-type sugar tr 97.1 0.00046 9.9E-09 54.8 2.9 23 14-36 32-54 (338)
475 TIGR01166 cbiO cobalt transpor 97.1 0.00054 1.2E-08 50.3 3.2 23 13-35 20-42 (190)
476 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00053 1.2E-08 51.1 3.2 23 13-35 29-51 (211)
477 COG1134 TagH ABC-type polysacc 97.1 0.00078 1.7E-08 50.5 3.9 24 13-36 55-78 (249)
478 PF02367 UPF0079: Uncharacteri 97.1 0.0011 2.4E-08 44.8 4.3 24 12-35 16-39 (123)
479 TIGR00960 3a0501s02 Type II (G 97.1 0.00054 1.2E-08 51.3 3.2 23 13-35 31-53 (216)
480 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00056 1.2E-08 50.8 3.2 23 13-35 28-50 (205)
481 TIGR02673 FtsE cell division A 97.0 0.00057 1.2E-08 51.1 3.2 23 13-35 30-52 (214)
482 cd03261 ABC_Org_Solvent_Resist 97.0 0.00058 1.3E-08 51.9 3.2 23 13-35 28-50 (235)
483 TIGR03608 L_ocin_972_ABC putat 97.0 0.00062 1.3E-08 50.6 3.2 23 13-35 26-48 (206)
484 cd03264 ABC_drug_resistance_li 97.0 0.00054 1.2E-08 51.1 2.9 23 13-35 27-49 (211)
485 PRK04040 adenylate kinase; Pro 97.0 0.00067 1.5E-08 49.7 3.3 23 12-34 3-25 (188)
486 cd03292 ABC_FtsE_transporter F 97.0 0.00062 1.3E-08 50.9 3.2 23 13-35 29-51 (214)
487 cd01131 PilT Pilus retraction 97.0 0.00061 1.3E-08 50.4 3.0 22 14-35 4-25 (198)
488 COG4619 ABC-type uncharacteriz 97.0 0.00067 1.5E-08 48.1 3.0 22 13-34 31-52 (223)
489 cd04178 Nucleostemin_like Nucl 97.0 0.0015 3.2E-08 47.1 4.9 44 136-181 1-44 (172)
490 cd03265 ABC_DrrA DrrA is the A 97.0 0.00065 1.4E-08 51.0 3.2 23 13-35 28-50 (220)
491 cd03269 ABC_putative_ATPase Th 97.0 0.00066 1.4E-08 50.6 3.2 23 13-35 28-50 (210)
492 PRK14531 adenylate kinase; Pro 97.0 0.0007 1.5E-08 49.4 3.3 23 12-34 3-25 (183)
493 PRK13541 cytochrome c biogenes 97.0 0.00068 1.5E-08 50.0 3.2 23 13-35 28-50 (195)
494 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.00066 1.4E-08 51.0 3.2 23 13-35 32-54 (220)
495 cd03262 ABC_HisP_GlnQ_permease 97.0 0.00067 1.5E-08 50.6 3.2 23 13-35 28-50 (213)
496 cd03229 ABC_Class3 This class 97.0 0.00071 1.5E-08 49.1 3.2 23 13-35 28-50 (178)
497 cd03259 ABC_Carb_Solutes_like 97.0 0.00068 1.5E-08 50.7 3.2 23 13-35 28-50 (213)
498 PF07728 AAA_5: AAA domain (dy 97.0 0.00065 1.4E-08 47.1 2.9 23 13-35 1-23 (139)
499 cd03260 ABC_PstB_phosphate_tra 97.0 0.00071 1.5E-08 51.1 3.3 23 13-35 28-50 (227)
500 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.00072 1.6E-08 47.3 3.0 23 13-35 28-50 (144)
No 1
>KOG0084|consensus
Probab=100.00 E-value=2.2e-38 Score=222.23 Aligned_cols=167 Identities=54% Similarity=0.898 Sum_probs=156.0
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
.+.+.++.+||+++|.+|||||+|+.|+....+.+.+..|+|.++..+++.+++..+.+++|||+||++++.+...|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|||+++.++|.++..|+.++++ +
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~---------------------------------------------------~ 110 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDR---------------------------------------------------Y 110 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhh---------------------------------------------------h
Confidence 9999999999999999999966666644 4
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
...++|.++|+||+|+.+.+.++.++.+.++.+++.+ ++++|||++.|+++.|..|..
T Consensus 111 ~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~ 169 (205)
T KOG0084|consen 111 ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAK 169 (205)
T ss_pred ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHH
Confidence 4457899999999999999999999999999999999 999999999999999998764
No 2
>KOG0078|consensus
Probab=100.00 E-value=6.7e-37 Score=217.87 Aligned_cols=170 Identities=48% Similarity=0.868 Sum_probs=158.0
Q ss_pred CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY 81 (223)
Q Consensus 2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 81 (223)
+|+...++..+||+++|.+|||||+++.++..+.+...+..++|+++..+++.+++..+.+++|||.|++.++.+...|+
T Consensus 3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 35556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+++.++++|||+++..+++++..| +..+.
T Consensus 83 rgA~gi~LvyDitne~Sfeni~~W---------------------------------------------------~~~I~ 111 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIRNW---------------------------------------------------IKNID 111 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHHHH---------------------------------------------------HHHHH
Confidence 999999999999999999999955 45555
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+....+|.++|+||+|+...+.+..++.++++.++|++|+++||++|.||++.|-.|++.
T Consensus 112 e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~ 172 (207)
T KOG0078|consen 112 EHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARD 172 (207)
T ss_pred hhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHH
Confidence 5555689999999999999999999999999999999999999999999999999988763
No 3
>KOG0080|consensus
Probab=100.00 E-value=1.7e-36 Score=205.38 Aligned_cols=171 Identities=46% Similarity=0.765 Sum_probs=156.8
Q ss_pred CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
|+.+....+..+||+++|.+|+|||||+.++..+.+.+....++|.++..+.+.+++..+++.+|||+|+++|+.+...|
T Consensus 1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy 80 (209)
T KOG0080|consen 1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY 80 (209)
T ss_pred CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence 55566677889999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++++.++|+|||++..++|..+.-|+.++.-+..+
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn--------------------------------------------- 115 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN--------------------------------------------- 115 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC---------------------------------------------
Confidence 99999999999999999999999777777554442
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++-.++|+||+|.++++.++.++...|++++++-|++|||++.+|++..|+.++.
T Consensus 116 -----~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 116 -----PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred -----ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHH
Confidence 24556889999999988999999999999999999999999999999999998875
No 4
>KOG0098|consensus
Probab=100.00 E-value=2.2e-36 Score=209.86 Aligned_cols=164 Identities=52% Similarity=0.887 Sum_probs=153.1
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
.+.+.+|++++|..|||||+|+.+++...|.+.++.|+|.++..+.+.++++.+++++|||.|++.++++...|++++.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||+++.++|..+..|+++++. +...
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq---------------------------------------------------~~~~ 110 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQ---------------------------------------------------HSNE 110 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHH---------------------------------------------------hcCC
Confidence 9999999999999999977776644 3345
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+..+++++||+|+...+.++.++.+.|++++|+.++++||++++|++|.|.....
T Consensus 111 NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 111 NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred CcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999987654
No 5
>KOG0092|consensus
Probab=100.00 E-value=9.4e-36 Score=208.26 Aligned_cols=162 Identities=49% Similarity=0.810 Sum_probs=150.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|..+||||||+.|+..+.|.+...+++|-.+.++++.++...+++.+|||+|+++|+++-.+|+|+++++++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 46899999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||+++.++|..++.|..++.+.. ++++-
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~---------------------------------------------------~~~~v 112 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQA---------------------------------------------------SPNIV 112 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhC---------------------------------------------------CCCeE
Confidence 999999999999997777665533 34667
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.+|+||+|+.+.+.+..++.+.++...|+.++++|||++.|++++|..|.+.
T Consensus 113 ialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 113 IALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred EEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999864
No 6
>KOG0087|consensus
Probab=100.00 E-value=1.2e-35 Score=210.59 Aligned_cols=167 Identities=80% Similarity=1.213 Sum_probs=158.0
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
+.++++.+||.++|.+++|||-|+.+++.+++.....+++|.++.+.++.++++.+..++|||+|+++|+.+...|++++
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
.++++|||+++..+++.+.+|+++++++.+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad-------------------------------------------------- 117 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHAD-------------------------------------------------- 117 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCC--------------------------------------------------
Confidence 999999999999999999988888877665
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++++++|+||+||...+.+..++.+.+++..+..++++||+...|+++.|+.++..
T Consensus 118 -~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 118 -SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred -CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999887653
No 7
>KOG0094|consensus
Probab=100.00 E-value=3.5e-35 Score=205.52 Aligned_cols=163 Identities=37% Similarity=0.729 Sum_probs=150.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+|++++|..+||||||++++..+.+...|.+++|.++...++.+.+..+.+++|||+||++|+.+...|++++.++++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||+++..+|+...+|++.+++..+. .+.-
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs--------------------------------------------------~~vi 130 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGS--------------------------------------------------DDVI 130 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCC--------------------------------------------------CceE
Confidence 99999999999999777766443221 2467
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||.||.+.++++.++.+..+.++++.|+++||+.|+||+++|..|..+
T Consensus 131 I~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAA 183 (221)
T ss_pred EEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999987654
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6e-35 Score=213.55 Aligned_cols=163 Identities=36% Similarity=0.731 Sum_probs=146.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+++|.+|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+..+..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888877778888888778888888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||++++.+++.+..|++++.. .. .+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~---------------------------------------------------~~-~~ 110 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDE---------------------------------------------------HA-PG 110 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CC
Confidence 999999999999999977666522 22 36
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+...+.++.++++.++.+.++++++|||++|.|++++|++|++.
T Consensus 111 ~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 111 VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 8999999999998878889999999999999999999999999999999999864
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.8e-34 Score=212.92 Aligned_cols=160 Identities=40% Similarity=0.750 Sum_probs=143.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+.|+++|..|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+..+..++..++++++++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899888888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++++++.+..|++.+ ......+.|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i---------------------------------------------------~~~~~~~~pii 109 (202)
T cd04120 81 DITKKETFDDLPKWMKMI---------------------------------------------------DKYASEDAELL 109 (202)
T ss_pred ECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCcEE
Confidence 999999999998666544 22223478999
Q ss_pred EeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+...+.+..++.++++.+. ++.+++|||++|.|++++|+++++.
T Consensus 110 lVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 110 LVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred EEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999877888888999998875 7899999999999999999999863
No 10
>KOG0394|consensus
Probab=100.00 E-value=2e-34 Score=199.73 Aligned_cols=168 Identities=39% Similarity=0.726 Sum_probs=152.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
....+||.++|.+|+|||||++++.+.++...+..+++-++.++.+.++++.+.+++|||+|+++|.++...+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||+.++.+++.+..|.+++...++ ...+..
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~-----------------------------------------------~~~Pe~ 118 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQAS-----------------------------------------------PQDPET 118 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcC-----------------------------------------------CCCCCc
Confidence 999999999999999999998855433 123346
Q ss_pred ceEEEeecccchhh--ccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRH--LRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
-|++|++||+|+.+ .+.++...+++|+... +++++++|||...||++.|+.+.+.
T Consensus 119 FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 119 FPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred ccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence 89999999999976 3789999999999876 5799999999999999999998764
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.4e-33 Score=205.42 Aligned_cols=161 Identities=32% Similarity=0.541 Sum_probs=140.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
+..+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999999999999999888888887555 456778889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 89 LVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+|||++++.+++.+ ..|...+ .... .+
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~ 109 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEI---------------------------------------------------QEFC-PN 109 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHHC-CC
Confidence 99999999999997 6565544 3322 26
Q ss_pred ceEEEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~ 222 (223)
.|+++|+||+|+.+ .+.++.++.++++.+.++ +|++|||+++.| ++++|+.++++
T Consensus 110 ~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 110 TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 89999999999864 245888999999999996 899999999998 99999999875
No 12
>KOG0093|consensus
Probab=100.00 E-value=4.8e-34 Score=190.67 Aligned_cols=166 Identities=39% Similarity=0.780 Sum_probs=153.3
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
++-.++.+|+.++|...+|||||+.++.+..+...+..+.|+++..+++.-..+++.+++|||.|++.++.+...+++++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 34556788999999999999999999999999999999999999999887777889999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
.+++++||+++++++..++ .|...+....
T Consensus 95 mgfiLmyDitNeeSf~svq---------------------------------------------------dw~tqIktys 123 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQ---------------------------------------------------DWITQIKTYS 123 (193)
T ss_pred ceEEEEEecCCHHHHHHHH---------------------------------------------------HHHHHheeee
Confidence 9999999999999999999 4455556666
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..+.|+|+|+||||+.+++.++.+..+.++.++|+.++++|||.+.|++++|+.++.
T Consensus 124 w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 124 WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999998865
No 13
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.9e-33 Score=201.66 Aligned_cols=161 Identities=52% Similarity=0.858 Sum_probs=142.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999998888878888888777788888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||++++.+++.+..|++.+ ......+.|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~i 110 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDA---------------------------------------------------RNLTNPNTVI 110 (166)
T ss_pred EECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeE
Confidence 9999999999998666544 2222346899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+.++.++.+.++...++++++|||+++.|++++|..+++.
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 111 FLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred EEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999998877888889999999999999999999999999999998753
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.6e-33 Score=202.06 Aligned_cols=158 Identities=34% Similarity=0.593 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|+.++..++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888889887655 455667888999999999999999999999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|++++++++.+ ..|+..+ .... .+.|+
T Consensus 81 d~~~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~~pi 108 (176)
T cd04133 81 SLISRASYENVLKKWVPEL---------------------------------------------------RHYA-PNVPI 108 (176)
T ss_pred EcCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCE
Confidence 99999999998 5565544 3222 26899
Q ss_pred EEeecccchhhcc----------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLR----------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+ .++.++.+.++...++ .+++|||+++.|++++|+.+++.
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 109 VLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred EEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 9999999996532 4788899999999998 59999999999999999999874
No 15
>KOG0086|consensus
Probab=100.00 E-value=5.9e-34 Score=191.61 Aligned_cols=169 Identities=51% Similarity=0.823 Sum_probs=155.5
Q ss_pred CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
|....+++.+|++++|+.|+|||+|++++..+++......+++.++..+.+.++++.+++++|||+|++.|+++.+.|++
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
++.+.++|||+++.+++..+..|+. ....
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~---------------------------------------------------DaR~ 109 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLT---------------------------------------------------DART 109 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHH---------------------------------------------------HHHh
Confidence 9999999999999999999995555 4455
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++++.+++++||.|+.+.++++..+.-+|+.++.+.+.++|+++|+|+++.|-...+.
T Consensus 110 lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 110 LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHH
Confidence 555688999999999999999999999999999999999999999999999999876653
No 16
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=6.4e-33 Score=200.07 Aligned_cols=163 Identities=52% Similarity=0.893 Sum_probs=144.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
++.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+..+...+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999998888899888887777888888889999999999998888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
++||++++.++..+..|+..+ ......+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~ 109 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNI---------------------------------------------------EEHASEDV 109 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHH---------------------------------------------------HHhCCCCC
Confidence 999999999999988665544 33233478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++++.
T Consensus 110 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 110 ERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred cEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999998767778888889999999999999999999999999999864
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.9e-33 Score=201.35 Aligned_cols=158 Identities=28% Similarity=0.515 Sum_probs=137.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.++.++..+.++.+..+ ...+.+++..+.+.+|||+|+..+..++..++++++++++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6899999999999999999999999888888886655 456778889999999999999999999999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|++++++++.+ ..|+..+ .... .+.|+
T Consensus 81 dit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~~~i 108 (178)
T cd04131 81 DISRPETLDSVLKKWRGEI---------------------------------------------------QEFC-PNTKV 108 (178)
T ss_pred ECCChhhHHHHHHHHHHHH---------------------------------------------------HHHC-CCCCE
Confidence 99999999996 6565544 3322 26899
Q ss_pred EEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~ 222 (223)
++|+||+|+.+ .+.++.++.++++.+.++ ++++|||+++++ ++++|+.++++
T Consensus 109 ilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 109 LLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 99999999964 245888999999999997 799999999995 99999999874
No 18
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1e-32 Score=197.76 Aligned_cols=160 Identities=43% Similarity=0.776 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+..+...+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888887778888888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++++++.+..|++.+. .....+.|++
T Consensus 81 d~~~~~sf~~~~~~~~~~~---------------------------------------------------~~~~~~~~ii 109 (161)
T cd04117 81 DISSERSYQHIMKWVSDVD---------------------------------------------------EYAPEGVQKI 109 (161)
T ss_pred ECCCHHHHHHHHHHHHHHH---------------------------------------------------HhCCCCCeEE
Confidence 9999999999986666552 2223468999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+.+..++...+++..++++++|||+++.|++++|.+|+++
T Consensus 110 lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 110 LIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999998877888899999999899999999999999999999999875
No 19
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.4e-32 Score=197.98 Aligned_cols=160 Identities=38% Similarity=0.746 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|+..+..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777778889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+++.++++.+..|+..+ ........|++
T Consensus 82 d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~pii 110 (165)
T cd01865 82 DITNEESFNAVQDWSTQI---------------------------------------------------KTYSWDNAQVI 110 (165)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCCEE
Confidence 999999999888666554 22223368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+....++..+++...+++++++||+++.|++++|+++.+.
T Consensus 111 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 111 LVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred EEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999998777777788888888889999999999999999999998763
No 20
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.2e-32 Score=202.91 Aligned_cols=164 Identities=37% Similarity=0.686 Sum_probs=143.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+||+++|.+|||||||++++.+..+...+.++.+.++....+.++ +..+.+.+||++|+..+..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888998888877777777 7888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||++++++++.+..|+..+.... ......++|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~-----------------------------------------------~~~~~~~~pi 113 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKV-----------------------------------------------TLPNGEPIPC 113 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----------------------------------------------cccCCCCCcE
Confidence 99999999999998877664311 1111246899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+...+.+..++.+.++...+ ..++++||+++.|++++|++|++.
T Consensus 114 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 114 LLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred EEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999998666788889999999988 689999999999999999999864
No 21
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.6e-32 Score=196.52 Aligned_cols=162 Identities=87% Similarity=1.269 Sum_probs=143.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||++++.++..+..|+..+ ......++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~p 110 (165)
T cd01868 82 VYDITKKQTFENVERWLKEL---------------------------------------------------RDHADSNIV 110 (165)
T ss_pred EEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCe
Confidence 99999999998888665554 333333689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+...+....++...++...+++++++||+++.|++++|+++++.
T Consensus 111 i~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 111 IMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999998777778888889988889999999999999999999999864
No 22
>KOG0079|consensus
Probab=100.00 E-value=1.1e-33 Score=189.23 Aligned_cols=162 Identities=47% Similarity=0.828 Sum_probs=151.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+..++.+++|.+|+|||+|+.++..+.+...|..++|.++..+++.+++..+.+.+||++|++.|+.+...++++.+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||+++.++|.++.+|++++++.++ .
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd----------------------------------------------------s 112 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD----------------------------------------------------S 112 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc----------------------------------------------------c
Confidence 999999999999999988887766544 4
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.|-++|+||+|.++.+.+..++.+.++.+.|+.++++||+.+.|++..|..|.+
T Consensus 113 v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 113 VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence 677999999999998899999999999999999999999999999999988764
No 23
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.7e-32 Score=197.30 Aligned_cols=160 Identities=27% Similarity=0.498 Sum_probs=136.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|+..+..++..++++++++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888888876553 4566788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 91 YDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 91 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
||++++++++.+. .|...+ .... .+.|
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i---------------------------------------------------~~~~-~~~p 107 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEI---------------------------------------------------THHC-PKTP 107 (175)
T ss_pred EECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCC
Confidence 9999999999986 354433 2222 3689
Q ss_pred EEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 170 IMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 170 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+++|+||+|+.+. +.+..++.++++.+.+ +.+++|||++|.|++++|+.++.+|
T Consensus 108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999999998653 4677788888888887 6899999999999999999999865
No 24
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.2e-32 Score=195.62 Aligned_cols=161 Identities=52% Similarity=0.849 Sum_probs=142.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988888788888788777787888888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||.++++++..+..|+..+.. ....+.|+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~---------------------------------------------------~~~~~~~~ 110 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDR---------------------------------------------------YASENVNK 110 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHH---------------------------------------------------hCCCCCcE
Confidence 999999999999866665522 22236899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++++||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 111 LLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred EEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHH
Confidence 9999999998777778888999999999999999999999999999999864
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.5e-32 Score=203.40 Aligned_cols=162 Identities=23% Similarity=0.454 Sum_probs=139.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
....+||+++|.+|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||+|++.+..+...++++++++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 34578999999999999999999999999988889987666 44577888999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 88 LLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 88 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
++|||++++++++.+ ..|+.++ .... .
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~ 116 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEI---------------------------------------------------MDYC-P 116 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHH---------------------------------------------------HHhC-C
Confidence 999999999999985 6665554 2222 2
Q ss_pred CceEEEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCC-CHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDST-NVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~~~~~i~~~ 222 (223)
+.|+++|+||+|+.. .+.++.++.++++.+.++ .|++|||++++ |++++|..++..
T Consensus 117 ~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 117 STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 679999999999864 256888999999999998 69999999998 899999998754
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.6e-32 Score=196.86 Aligned_cols=161 Identities=27% Similarity=0.495 Sum_probs=139.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..++++++++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999877778876444 44566788888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||++++.++..+..|...+.+. ....++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~--------------------------------------------------~~~~~~pi 110 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRV--------------------------------------------------RLTEDIPL 110 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence 9999999999998665544221 11236899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+.++.++.+.++...++++++|||+++.|++++|+++++.
T Consensus 111 ilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 111 VLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVRE 162 (172)
T ss_pred EEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHH
Confidence 9999999998777888889999999999999999999999999999999853
No 27
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.7e-32 Score=198.46 Aligned_cols=164 Identities=40% Similarity=0.751 Sum_probs=141.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc----------CeEEEEEEEeCCCCccccccch
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD----------QKTIKAQIWDTAGQERYRAITS 78 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~ 78 (223)
++.+||+++|++|||||||++++.+..+...+.++++.++....+.+. +..+.+.+||++|+..+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888877766666553 3568899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625 79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR 158 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (223)
.+++++|++++|||+++++++..+..|+..+...
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---------------------------------------------- 115 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH---------------------------------------------- 115 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 9999999999999999999999998766655221
Q ss_pred HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
....+.|+++|+||+|+.+.+.+..++...++.+.+++++++||+++.|++++|++|++.
T Consensus 116 ----~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 116 ----AYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred ----cCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 112368999999999998877788888999999999999999999999999999999864
No 28
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4.3e-32 Score=195.92 Aligned_cols=163 Identities=52% Similarity=0.864 Sum_probs=144.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
++.+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++....+.+||++|+..+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999988888888888888888888888889999999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||++++.++..+..|+..+ ......+.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~ 110 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDA---------------------------------------------------RQHSNSNM 110 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCC
Confidence 999999999999988665554 33223478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||.|+.+.+.+..++.+.++.+.++.++++||+++.|++++|.++++.
T Consensus 111 pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 111 TIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred cEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999998766778888989999999999999999999999999998764
No 29
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.3e-32 Score=202.26 Aligned_cols=166 Identities=77% Similarity=1.181 Sum_probs=146.9
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
.+.++.+||+++|++|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||++|+..+..+...++++++
T Consensus 7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 34557799999999999999999999999988788889888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||++++.+++.+..|+..+ .....
T Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~ 115 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQRWLREL---------------------------------------------------RDHAD 115 (216)
T ss_pred EEEEEEECCChHHHHHHHHHHHHH---------------------------------------------------HHhCC
Confidence 999999999999999988665544 33333
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus 116 ~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 116 SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 478999999999998777788888999999899999999999999999999999753
No 30
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5e-32 Score=203.06 Aligned_cols=160 Identities=36% Similarity=0.614 Sum_probs=138.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|.+|||||||++++..+.+...+.++++.++....+..++..+.+.+||++|+..+..++..+++++++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999999998888899988888877777778899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||+++..+++.+..|++.+.. .. .+.
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~---------------------------------------------------~~-~~~ 118 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCR---------------------------------------------------VC-ENI 118 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCC
Confidence 99999999999999877665532 11 368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+ +.+..++. .++...++++++|||+++.|++++|++|++.
T Consensus 119 piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 119 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred cEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 9999999999965 34444555 6777788999999999999999999999864
No 31
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.3e-32 Score=199.62 Aligned_cols=159 Identities=33% Similarity=0.567 Sum_probs=136.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|+..+..++..+++++|++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888887554 44556788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 91 YDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 91 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
||++++.+++.+. .|...+ .... .+.|
T Consensus 82 ydit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~~p 109 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEV---------------------------------------------------CHHC-PNVP 109 (191)
T ss_pred EECCCHHHHHHHHHHHHHHH---------------------------------------------------HhhC-CCCC
Confidence 9999999999996 354433 2222 3689
Q ss_pred EEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+. +.+..++.+.++.+.+ +++++|||+++.|++++|+++++.
T Consensus 110 iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 110 ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 9999999999653 2366778899999888 589999999999999999999864
No 32
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.7e-32 Score=195.06 Aligned_cols=165 Identities=31% Similarity=0.652 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+||++|+..+..++..++++++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899888888888888888999999999999989899999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++++++..+..|+.++.+.... .....+.|++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~pii 114 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGP----------------------------------------------HGNMENIVVV 114 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccc----------------------------------------------cccCCCceEE
Confidence 999999999998777766442211 0012368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+....++.+.++...+++++++||+++.|++++|++|++.
T Consensus 115 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 115 VCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred EEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 999999997656677888888888889999999999999999999999864
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.9e-32 Score=193.41 Aligned_cols=159 Identities=36% Similarity=0.721 Sum_probs=145.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+..++..+++++++++++||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998889989999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
++++++++.+..|+..+ ......+.|+++
T Consensus 81 ~~~~~S~~~~~~~~~~i---------------------------------------------------~~~~~~~~~iiv 109 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEI---------------------------------------------------QKYKPEDIPIIV 109 (162)
T ss_dssp TTBHHHHHTHHHHHHHH---------------------------------------------------HHHSTTTSEEEE
T ss_pred ccccccccccccccccc---------------------------------------------------ccccccccccee
Confidence 99999999999666555 333334689999
Q ss_pred eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++||+|+.+.+.++.+++++++.+++.+++++||+++.|+.++|..+++.
T Consensus 110 vg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 110 VGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp EEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred eeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999864
No 34
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-31 Score=193.44 Aligned_cols=163 Identities=46% Similarity=0.821 Sum_probs=141.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
++.+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+......+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999888888788877887778888888889999999999989888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
++||.+++.+++.+..|++.+ ......++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~ 109 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEV---------------------------------------------------EKYGASNV 109 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHH---------------------------------------------------HHhCCCCC
Confidence 999999999999888666655 22233478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.+....++...++...+. .++++||+++.|++++|+++.+.
T Consensus 110 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 110 VLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999987777778888888888875 68999999999999999999864
No 35
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-31 Score=198.45 Aligned_cols=163 Identities=46% Similarity=0.800 Sum_probs=143.1
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 34679999999999999999999999988877888888888777888888888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||++++++++.+..|+..+.. .. ..
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~ 110 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQ---------------------------------------------------NC-DD 110 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CC
Confidence 999999999999999866665522 11 25
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 111 ~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 111 VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 7999999999998766777888888988889999999999999999999998764
No 36
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.8e-32 Score=201.30 Aligned_cols=163 Identities=33% Similarity=0.589 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-eEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|+..+..+...+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889998888887777754 578999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||++++++++.+..|+..+.+... ....+.|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~------------------------------------------------~~~~~~pi 112 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLK------------------------------------------------SSETQPLV 112 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcc------------------------------------------------ccCCCceE
Confidence 999999999999977776644211 11235789
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|++.
T Consensus 113 ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 113 VLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999998777788889999999999999999999999999999999763
No 37
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=9.6e-32 Score=193.08 Aligned_cols=160 Identities=31% Similarity=0.529 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+..+..++..++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777767765 444566777888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++.+++.+..|++.+... ....++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii 110 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRV--------------------------------------------------KDTENVPMV 110 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence 999999999998776655331 112368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+.+..++...++...+.+++++||+++.|++++|+++++.
T Consensus 111 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 111 LVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred EEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 999999997666677777888888888999999999999999999999864
No 38
>KOG0095|consensus
Probab=100.00 E-value=1.8e-32 Score=183.81 Aligned_cols=163 Identities=44% Similarity=0.814 Sum_probs=149.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
.++..+||+++|..|+|||+|+++++.+-+++....++|.++-.+++.+++..+++++|||+|+++++++...|++.+|+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||++...+|+-++.|+++++.+.. .
T Consensus 83 lilvydiscqpsfdclpewlreie~yan---------------------------------------------------~ 111 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYAN---------------------------------------------------N 111 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhh---------------------------------------------------c
Confidence 9999999999999999977776655433 4
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
++--|+|+||+|+.+.+++..+..+++......-++++||+...|++.+|..+.
T Consensus 112 kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 112 KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 556689999999999889999889999988777799999999999999998775
No 39
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.4e-31 Score=191.90 Aligned_cols=160 Identities=54% Similarity=0.857 Sum_probs=141.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.+++.++..+..|+..+ ......++|++
T Consensus 81 d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~ii 109 (161)
T cd04113 81 DITNRTSFEALPTWLSDA---------------------------------------------------RALASPNIVVI 109 (161)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeEE
Confidence 999999998888665544 33333478999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++||+|+.+.+.+..++...++...++.++++||+++.|++++|+++++.
T Consensus 110 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 110 LVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 999999998777788889999999999999999999999999999999864
No 40
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.7e-31 Score=192.29 Aligned_cols=163 Identities=31% Similarity=0.464 Sum_probs=137.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.+..+...+.++.+..+ ......+...+.+.+||++|+..+..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777665444 445556777889999999999999988899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+++.++++.+..|++.+.+. ......++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~------------------------------------------------~~~~~~~~pii 112 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEI------------------------------------------------KGNNIEKIPIM 112 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHH------------------------------------------------hcCCCCCCCEE
Confidence 999999999998776655331 11122478999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+|+||+|+.+.+.+..++...++...++++++|||++|.|++++|++|+.++
T Consensus 113 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~~ 164 (165)
T cd04140 113 LVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNLE 164 (165)
T ss_pred EEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhcc
Confidence 9999999987677777788888888889999999999999999999998753
No 41
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.7e-31 Score=191.64 Aligned_cols=159 Identities=35% Similarity=0.644 Sum_probs=139.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc--CeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD--QKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
+||+++|.+|+|||||+++++++.+...+.++.+.++....+.+. +..+.+.+||+||+..+..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998888888888888777767676 777899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||.++++++..+..|+..+.. .. .++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~---------------------------------------------------~~-~~~p 108 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEA---------------------------------------------------EC-GDIP 108 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCCC
Confidence 9999999999888866554422 11 3689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 109 ~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 109 MVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999998767778888899999999999999999999999999999764
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.6e-31 Score=192.17 Aligned_cols=161 Identities=29% Similarity=0.515 Sum_probs=137.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887777767765444 45666788888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||+++..+++.+..|+..+.+. ....+.|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pi 109 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRV--------------------------------------------------KDTEDVPM 109 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence 9999999999998776655221 11247899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++++||+|+.+.+.+..++...++++.+++++++||+++.|++++|+++++.
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 110 ILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred EEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 9999999998766677777888888889999999999999999999999863
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.7e-31 Score=194.76 Aligned_cols=159 Identities=28% Similarity=0.524 Sum_probs=135.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+..+..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988888888888888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++.+++.+..|++.+.. ......| +
T Consensus 81 D~t~~~s~~~i~~~~~~~~~---------------------------------------------------~~~~~~p-i 108 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARG---------------------------------------------------FNKTAIP-I 108 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHH---------------------------------------------------hCCCCCE-E
Confidence 99999999999877665522 2223567 5
Q ss_pred Eeecccchhh-----ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRH-----LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.. .+....++.++++...++++++|||+++.|++++|+++.+.
T Consensus 109 lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 7899999852 11223456778888889999999999999999999998753
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-31 Score=195.85 Aligned_cols=160 Identities=49% Similarity=0.827 Sum_probs=141.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888887778888888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++++++..+..|+..+. .......|++
T Consensus 81 d~~~~~s~~~i~~~~~~i~---------------------------------------------------~~~~~~~~~i 109 (188)
T cd04125 81 DVTDQESFENLKFWINEIN---------------------------------------------------RYARENVIKV 109 (188)
T ss_pred ECcCHHHHHHHHHHHHHHH---------------------------------------------------HhCCCCCeEE
Confidence 9999999999986666553 2223358999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus 110 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 110 IVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred EEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999998777778888888888889999999999999999999998864
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.6e-31 Score=191.99 Aligned_cols=161 Identities=32% Similarity=0.616 Sum_probs=137.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|+..+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888877788888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.++++++..+..|+..+.+ ...+...|+++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~iil 111 (170)
T cd04108 82 LTDVASLEHTRQWLEDALK--------------------------------------------------ENDPSSVLLFL 111 (170)
T ss_pred CcCHHHHHHHHHHHHHHHH--------------------------------------------------hcCCCCCeEEE
Confidence 9999999998866655422 12223578999
Q ss_pred eecccchhhccC--CChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 173 VGNKSDLRHLRA--VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 173 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
|+||+|+.+.+. ...++...++.+.+.+++++||+++.|++++|+.|++++
T Consensus 112 VgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 112 VGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999865333 345667778888889999999999999999999998753
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.5e-31 Score=194.64 Aligned_cols=162 Identities=33% Similarity=0.538 Sum_probs=139.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|+.++..++..++++++++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 468999999999999999999999988777777776555 5566788888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||++++++++.+..|.+.+.+. ....+.|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p 112 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRV--------------------------------------------------KDKDRVP 112 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCC
Confidence 99999999999998776655221 1123789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus 113 iiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 113 MILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred EEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999997766777778888888888999999999999999999999763
No 47
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5.3e-31 Score=190.59 Aligned_cols=166 Identities=38% Similarity=0.699 Sum_probs=142.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
+..+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++++++++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999988877788877777777788889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||+++.++++.+..|..++..... .....+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~ 115 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYAD-----------------------------------------------VKEPESF 115 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcc-----------------------------------------------cccCCCC
Confidence 99999999999999988776633211 1112468
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+. .+.+..++.++++.+.+. +++++||+++.|+.++|+++++.
T Consensus 116 piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 116 PFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred cEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 999999999987 456778889999988874 79999999999999999999863
No 48
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-31 Score=195.75 Aligned_cols=160 Identities=44% Similarity=0.780 Sum_probs=137.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+||+++|.+|||||||++++.+..+.. .+.++.+.++....+.+++..+.+.+||+||+..+...+..++++++++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 4567777677666677888889999999999999988888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
+|+++.++++.+..|+..+ ......++|+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~pi 109 (191)
T cd04112 81 YDITNKASFDNIRAWLTEI---------------------------------------------------KEYAQEDVVI 109 (191)
T ss_pred EECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCcE
Confidence 9999999999888665544 3333347899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+...+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 110 iiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 110 MLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred EEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999997767777888889999999999999999999999999999864
No 49
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.1e-31 Score=197.13 Aligned_cols=164 Identities=53% Similarity=0.887 Sum_probs=144.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+|+|++|||||||++++.+..+...+.++++.++....+.+++..+.+.+||++|+..+..++..+++++|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999988888888888888787888888888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||.+++.++..+..|+..+ ......+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~---------------------------------------------------~~~~~~~ 111 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDA---------------------------------------------------RQHANAN 111 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHH---------------------------------------------------HHhcCCC
Confidence 9999999999999888665544 2222347
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++++||+|+.+.+.++.++.++++.+++++++++||+++.|++++|+++++.
T Consensus 112 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred CcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999998877788889999999999999999999999999999998753
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.7e-31 Score=195.40 Aligned_cols=161 Identities=36% Similarity=0.557 Sum_probs=137.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|+..+..++..+++++|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999988777777776444 4455677888899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
+++.++++.+..|++.+..... ....+.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~~~~~~piil 111 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKD------------------------------------------------ESAADVPIMI 111 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc------------------------------------------------ccCCCCCEEE
Confidence 9999999999977776643211 1124689999
Q ss_pred eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+||+|+...+.+...+...++...+++++++||+++.|++++|+++++.
T Consensus 112 vgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 112 VGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred EEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999998767778888888888889999999999999999999999864
No 51
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.98 E-value=7.1e-31 Score=189.09 Aligned_cols=156 Identities=36% Similarity=0.667 Sum_probs=132.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888888877777777788899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+++.+++..+..|+..+.+ ... ++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~~-~~pii 108 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVR---------------------------------------------------VCG-NIPIV 108 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------------------------------------hCC-CCcEE
Confidence 99999999999866655532 222 78999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+|+||+|+.+ +... .+..++....+++++++||++++|++++|++|++
T Consensus 109 iv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 109 LCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred EEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 9999999974 3333 3445666677889999999999999999999985
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=7.1e-31 Score=195.81 Aligned_cols=162 Identities=46% Similarity=0.767 Sum_probs=141.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
.+||+++|.+|||||||++++.+..+...+.++++.++....+.+ ++..+.+.+||++|+..+..+...++++++++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999988888888888887777776 4667899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||++++++++.+..|+..+... ......|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~--------------------------------------------------~~~~~~~ 111 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSH--------------------------------------------------IQPHRPV 111 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCe
Confidence 99999999999998766655221 1123578
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus 112 iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 112 FILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred EEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999998777888889999999999999999999999999999999864
No 53
>KOG0091|consensus
Probab=99.98 E-value=7.5e-32 Score=183.36 Aligned_cols=166 Identities=46% Similarity=0.786 Sum_probs=149.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
-++-++.+++|.+-+|||+|++.++.+++++-.+|++|.++....+.+ ++..+++++|||+|++.++++...|+++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 456789999999999999999999999999999999999998887776 5788999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||.++..+|+.++.|..+..-+ ...+.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~-------------------------------------------------~q~P~ 115 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMA-------------------------------------------------TQGPD 115 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHh-------------------------------------------------cCCCC
Confidence 99999999999999999887765221 11234
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++-+++|++|+|+...++++.++.+.++..+|..|+++||+++.|+++.|..|.+.
T Consensus 116 k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 116 KVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred eeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999888764
No 54
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=9.2e-31 Score=189.80 Aligned_cols=158 Identities=32% Similarity=0.524 Sum_probs=133.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|+..+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 69999999999999999999999888888787753 33445667888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|+++++++..+. .|...+ .... .+.|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~---------------------------------------------------~~~~-~~~pi 108 (174)
T cd01871 81 SLVSPASFENVRAKWYPEV---------------------------------------------------RHHC-PNTPI 108 (174)
T ss_pred ECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCE
Confidence 999999999985 344433 2222 36899
Q ss_pred EEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+. +.++.++...++.+.+. ++++|||++|.|++++|+.+++.
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 109 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 999999999642 24778888999998885 89999999999999999999864
No 55
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=1e-30 Score=187.37 Aligned_cols=160 Identities=38% Similarity=0.755 Sum_probs=140.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999998999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++++++..+..|+..+ ......+.|++
T Consensus 81 d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~ii 109 (161)
T cd01861 81 DITNRQSFDNTDKWIDDV---------------------------------------------------RDERGNDVIIV 109 (161)
T ss_pred ECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCEEE
Confidence 999999998888665544 22222368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++||+|+.+.+....++...++...+++++++||+++.|++++|+++.+.
T Consensus 110 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 110 LVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 999999997666777788888888889999999999999999999999875
No 56
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.98 E-value=1.1e-30 Score=187.72 Aligned_cols=160 Identities=63% Similarity=0.993 Sum_probs=140.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||+..+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888887778888888889999999999988889999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.+++.+++.+..|+..+ ......++|++
T Consensus 81 d~~~~~s~~~~~~~l~~~---------------------------------------------------~~~~~~~~piv 109 (164)
T smart00175 81 DITNRESFENLKNWLKEL---------------------------------------------------REYADPNVVIM 109 (164)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeEE
Confidence 999999998888555544 33333479999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++||+|+.+.+....++.+.++.+.+++++++|++++.|++++|++|.+.
T Consensus 110 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 110 LVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred EEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999998767778888888998899999999999999999999998763
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=1e-30 Score=187.85 Aligned_cols=161 Identities=32% Similarity=0.523 Sum_probs=136.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+..+..++..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877767654 45556777788888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||++++.++..+..|+..+.+. ....++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~pi 109 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRV--------------------------------------------------KGYEKVPI 109 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence 9999999999998776655321 11247899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+.+...+...++...+++++++||+++.|+.++|+++++.
T Consensus 110 viv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 110 ILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred EEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 9999999997766667777788888888999999999999999999999863
No 58
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=6.7e-31 Score=196.10 Aligned_cols=158 Identities=27% Similarity=0.494 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+|+|.+|||||||++++....++..+.|+++..+. ..+.+++..+.+.+|||+|+..+..++..+++++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 69999999999999999999999998888898876653 56778889999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|++++++++.+.. |... +.... .+.|+
T Consensus 81 dis~~~Sf~~i~~~w~~~---------------------------------------------------~~~~~-~~~pi 108 (222)
T cd04173 81 DISRPETLDSVLKKWQGE---------------------------------------------------TQEFC-PNAKV 108 (222)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhhC-CCCCE
Confidence 9999999999853 3332 22222 36899
Q ss_pred EEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~ 222 (223)
++|+||+|+.+. ..++.++...++.+.++ .|++|||+++.+ ++++|+.++.+
T Consensus 109 iLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 109 VLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred EEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 999999999642 13677899999999996 899999999885 99999998765
No 59
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.98 E-value=7.2e-31 Score=195.84 Aligned_cols=155 Identities=37% Similarity=0.595 Sum_probs=130.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++..+.+.. ..++++.++.... ...+.+.+||++|+..+..++..++++++++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 4566665554332 24578999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++++++.+..|+..+ ......+.|++
T Consensus 76 Dvt~~~Sf~~l~~~~~~l---------------------------------------------------~~~~~~~~piI 104 (220)
T cd04126 76 DVSNVQSLEELEDRFLGL---------------------------------------------------TDTANEDCLFA 104 (220)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCCcEE
Confidence 999999999998655544 22223468999
Q ss_pred Eeecccchhh-------------------ccCCChHHHHHHHHHcC--------------CeEEEeecCCCCCHHHHHHH
Q psy15625 172 LVGNKSDLRH-------------------LRAVPADEAKTFAERNN--------------LSFIETSALDSTNVETAFQN 218 (223)
Q Consensus 172 vv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~~~~~ 218 (223)
+|+||+|+.+ .+.++.++.+.++.+.+ +++++|||++|+|++++|+.
T Consensus 105 lVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~ 184 (220)
T cd04126 105 VVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEY 184 (220)
T ss_pred EEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHH
Confidence 9999999975 57788899999999876 67999999999999999999
Q ss_pred HHhh
Q psy15625 219 ILTA 222 (223)
Q Consensus 219 i~~~ 222 (223)
+++.
T Consensus 185 i~~~ 188 (220)
T cd04126 185 LFNL 188 (220)
T ss_pred HHHH
Confidence 9864
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.98 E-value=1.6e-30 Score=186.90 Aligned_cols=162 Identities=33% Similarity=0.566 Sum_probs=136.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
+.+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||+.++..++..++++++++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999999887666666655333 4455678888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||+++..+++.+..|.+.+.+. ....+.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p 109 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRV--------------------------------------------------KDRDEFP 109 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--------------------------------------------------hCCCCCC
Confidence 99999999999998776655321 1123689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++++||+|+...+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus 110 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 110 MILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred EEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence 99999999998766677778888888889999999999999999999999864
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.98 E-value=2e-30 Score=186.24 Aligned_cols=161 Identities=48% Similarity=0.835 Sum_probs=141.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998876778877778788888899999999999999988888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
+|.++++++.....|++.+ ......+.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~i 109 (163)
T cd01860 81 YDITSEESFEKAKSWVKEL---------------------------------------------------QRNASPNIII 109 (163)
T ss_pred EECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeE
Confidence 9999999998888665544 3333347899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++++||+|+...+....++...+....+++++++||+++.|+.++|++|++.
T Consensus 110 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 110 ALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred EEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999998666777888888888889999999999999999999999864
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.3e-30 Score=187.37 Aligned_cols=159 Identities=34% Similarity=0.577 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+||+||+.++..++..++++++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999988777767665 333455667788889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++++++.+..|...+.+. ....+.|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii 109 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRV--------------------------------------------------KDRDDVPIV 109 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence 999999999998776654221 112368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+|+||+|+...+....++...++...+.+++++||+++.|++++|++|+.
T Consensus 110 ~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 110 LVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred EEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999876667778888888888999999999999999999999975
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.8e-30 Score=186.19 Aligned_cols=156 Identities=37% Similarity=0.645 Sum_probs=131.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.++.+.+.+.++.+.+.......+++..+.+.+||++|+..+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777766776667777888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.+++.++..+..|+..+.+ .. .++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~~p~i 108 (161)
T cd04124 81 DVTRKITYKNLSKWYEELRE---------------------------------------------------YR-PEIPCI 108 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCCcEE
Confidence 99999998888866665522 11 268999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+... ..++...++...+++++++||+++.|++++|+.+++.
T Consensus 109 vv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 109 VVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred EEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999998531 2344556677778999999999999999999999864
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.5e-30 Score=191.19 Aligned_cols=157 Identities=35% Similarity=0.561 Sum_probs=131.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..++++++++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 799999999999999999999999887778876554 3455567788899999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 93 IAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
++++++++.+. .|+..+ .... .+.|++
T Consensus 81 v~~~~sf~~~~~~~~~~i---------------------------------------------------~~~~-~~~pii 108 (189)
T cd04134 81 VDSPDSLENVESKWLGEI---------------------------------------------------REHC-PGVKLV 108 (189)
T ss_pred CCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCEE
Confidence 99999999886 354443 2222 368999
Q ss_pred Eeecccchhhcc------------CCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLR------------AVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+...+ .+..++...++...+ +++++|||+++.|++++|+++++.
T Consensus 109 lvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 109 LVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred EEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 999999996532 345667778887776 689999999999999999999875
No 65
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.8e-30 Score=190.93 Aligned_cols=159 Identities=26% Similarity=0.424 Sum_probs=126.3
Q ss_pred eEEEEEEcCCCCcHHHHHH-HHhhCc-----cccccccccee-eeEEEE--------EEEcCeEEEEEEEeCCCCccccc
Q psy15625 11 LFKVVLIGDSGVGKSNLLS-RFTRNE-----FNLESKSTIGV-EFATRS--------IQVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
.+||+++|.+|||||||+. ++.+.. +...+.|+++. +..... ..+++..+.+.+|||+|+.. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665543 34455666642 222222 24678889999999999865 3
Q ss_pred cchhhhcCCcEEEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (223)
+...++++++++++|||++++.+++.+. .|.+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i--------------------------------------------- 114 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI--------------------------------------------- 114 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHH---------------------------------------------
Confidence 5566899999999999999999999996 365544
Q ss_pred HHHHHhhhccCCCceEEEeecccchhh-------------------ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRH-------------------LRAVPADEAKTFAERNNLSFIETSALDSTNVETA 215 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 215 (223)
.... .+.|+++|+||+|+.. .+.++.++.+.++.+.+++|++|||+++.|++++
T Consensus 115 ------~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~ 187 (195)
T cd01873 115 ------RHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDV 187 (195)
T ss_pred ------HHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHH
Confidence 2222 2689999999999863 3678889999999999999999999999999999
Q ss_pred HHHHHhhC
Q psy15625 216 FQNILTAN 223 (223)
Q Consensus 216 ~~~i~~~~ 223 (223)
|+.++++|
T Consensus 188 F~~~~~~~ 195 (195)
T cd01873 188 FDNAIRAA 195 (195)
T ss_pred HHHHHHhC
Confidence 99999875
No 66
>KOG0088|consensus
Probab=99.97 E-value=1.3e-31 Score=181.36 Aligned_cols=164 Identities=38% Similarity=0.699 Sum_probs=149.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
.....+||+++|..-+|||||+-++..++|+.....+.--.+..+.+.+++....+.+|||+|++.|+.+-..|+++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34457999999999999999999999999998888777677788888899999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||+++.++|+.++.|..++ ..+.+.
T Consensus 89 alLVyDITDrdSFqKVKnWV~El---------------------------------------------------r~mlGn 117 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLEL---------------------------------------------------RTMLGN 117 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHH---------------------------------------------------HHHhCC
Confidence 99999999999999999665555 445556
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.+-++||+||+|+++.+.++.++.++.++..|..++++||+.+.||.++|+.+.+
T Consensus 118 ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 118 EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTA 172 (218)
T ss_pred eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999998764
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=4.2e-30 Score=185.88 Aligned_cols=162 Identities=39% Similarity=0.739 Sum_probs=140.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-ccchhhhcCCcEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-AITSAYYRGAVGALL 89 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~ 89 (223)
.+||+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|+.++. .+...+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999998887788888888878888888888999999999998776 567888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||.++++++..+..|++.+.... ...++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------------------------~~~~~p 111 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHS--------------------------------------------------LPNEVP 111 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhc--------------------------------------------------CCCCCC
Confidence 999999999999987766553311 123689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC---CCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD---STNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++...++...+++++++||++ +.+++++|..+++.
T Consensus 112 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 112 RILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred EEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 999999999988778888888899998899999999999 89999999998763
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=3.4e-30 Score=184.71 Aligned_cols=159 Identities=32% Similarity=0.555 Sum_probs=134.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.++.+...+.++.+..+ .....+++..+.+.+||++|+..+..++..++++++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6999999999999999999999988777777765433 555667888888999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+++..++..+..|+..+.+. ....+.|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii 110 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRV--------------------------------------------------KDSDDVPMV 110 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence 999999998888666655221 112368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+ +....++...++...+++++++||+++.|++++|+++++.
T Consensus 111 vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 111 LVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred EEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999976 4566778888888889999999999999999999999864
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=3e-30 Score=190.20 Aligned_cols=152 Identities=34% Similarity=0.625 Sum_probs=132.2
Q ss_pred EcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 17 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 17 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
+|.+|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+..+..++..++++++++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888988888888888888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecc
Q psy15625 97 LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNK 176 (223)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 176 (223)
.++..+..|+.++.+ .. .++|+++|+||
T Consensus 81 ~S~~~i~~w~~~i~~---------------------------------------------------~~-~~~piilvgNK 108 (200)
T smart00176 81 VTYKNVPNWHRDLVR---------------------------------------------------VC-ENIPIVLCGNK 108 (200)
T ss_pred HHHHHHHHHHHHHHH---------------------------------------------------hC-CCCCEEEEEEC
Confidence 999999877666633 21 36899999999
Q ss_pred cchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 177 SDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 177 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+.. +.+..+. ..++...++.+++|||+++.|++++|++|++.
T Consensus 109 ~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 109 VDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred ccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99864 3444444 46777889999999999999999999999863
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=3.5e-30 Score=190.09 Aligned_cols=163 Identities=21% Similarity=0.332 Sum_probs=127.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc--------cchhhhcC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA--------ITSAYYRG 83 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 83 (223)
+||+|+|.+|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+.. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888878876666556666788888999999999654321 12234688
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|||.+++++++.+..|++.+.+.. ..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~------------------------------------------------~~ 112 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETR------------------------------------------------PA 112 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------------------------cc
Confidence 999999999998888888886665553211 01
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+...+....++.+.++. ..++++++|||++|.|++++|+.+++.
T Consensus 113 ~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 113 GNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred CCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 12478999999999997766666667777654 568999999999999999999998864
No 71
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=6.1e-30 Score=185.28 Aligned_cols=164 Identities=38% Similarity=0.714 Sum_probs=139.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+..++..+++++++++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777788777777777888888889999999999989999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.+++.+++....|...+.. ........++|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~p~i 113 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLI-----------------------------------------------QASPSDPENFPFV 113 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHH-----------------------------------------------hcCccCCCCceEE
Confidence 99999888888766654422 2222223478999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+..++....++.+.+....+ .+++++|++++.|++++|+++.++
T Consensus 114 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 114 VLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred EEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 999999998656667788888888887 789999999999999999999875
No 72
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=3.5e-30 Score=195.69 Aligned_cols=169 Identities=22% Similarity=0.409 Sum_probs=138.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.++.+...+.++++ ++....+.+++..+.+.+|||+|+..+..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877777765 555667778888899999999999988888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+++.++++.+..|++++..... ..........++|++
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~------------------------------------------~~~~~~~~~~~~piI 117 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKS------------------------------------------CLKNKTKENVKIPMV 117 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhc------------------------------------------ccccccccCCCCcEE
Confidence 99999999999988887744211 000011122468999
Q ss_pred EeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+|+||+|+...+.+..+++.+++.. .++.++++||+++.|++++|++|++.+
T Consensus 118 ivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 118 ICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999987667777888777654 467899999999999999999998753
No 73
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=8.1e-30 Score=182.73 Aligned_cols=160 Identities=40% Similarity=0.707 Sum_probs=136.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|+|||||++++.+..+...+.++.+.+.....+...+..+.+.+||++|+..+..++..++++++++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766666666666666777777889999999999989999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+++.++++.+..|.+++ ......++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~pii 109 (162)
T cd04123 81 DITDADSFQKVKKWIKEL---------------------------------------------------KQMRGNNISLV 109 (162)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeEE
Confidence 999999888888655544 33333368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++||+|+...+.+..++.+.+....+++++++|+++++|++++|+++.+.
T Consensus 110 iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 110 IVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999998766777788888888889999999999999999999999764
No 74
>KOG0097|consensus
Probab=99.97 E-value=3.3e-30 Score=171.56 Aligned_cols=167 Identities=52% Similarity=0.859 Sum_probs=150.4
Q ss_pred CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY 81 (223)
Q Consensus 2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 81 (223)
...+-.+.+.+|-+++|..|+|||+|+..++..++....+.+++.++.+..+.+.++.+.+++||+.|+++++.+.+.++
T Consensus 2 ~~~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyy 81 (215)
T KOG0097|consen 2 TAAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 81 (215)
T ss_pred CCCccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHh
Confidence 33444555679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+++.+.++|||+++.++...+..|+... .
T Consensus 82 rgaagalmvyditrrstynhlsswl~da---------------------------------------------------r 110 (215)
T KOG0097|consen 82 RGAAGALMVYDITRRSTYNHLSSWLTDA---------------------------------------------------R 110 (215)
T ss_pred ccccceeEEEEehhhhhhhhHHHHHhhh---------------------------------------------------h
Confidence 9999999999999999999998666544 3
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 219 (223)
....++..+++++||.|++..+.+..++.+++++++|+.|+++||++|+++++.|-..
T Consensus 111 ~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 111 NLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred ccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence 3334577889999999999999999999999999999999999999999999987553
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=6.8e-30 Score=183.71 Aligned_cols=159 Identities=33% Similarity=0.608 Sum_probs=134.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
+||+++|.+|||||||++++..+ .+...+.++.+.++....+.++ +..+.+.+||++|+..+..+...+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667777888777766666664 56789999999999988888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||.++++++..+..|++.+.. .. .+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------~~-~~~ 108 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRT---------------------------------------------------AS-KHM 108 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCC
Confidence 99999999998888866655422 22 368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.+.+...+.+.+....+++++++||+++.|++++|+.+++.
T Consensus 109 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 109 PGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred CEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 999999999997766677767777777788899999999999999999999875
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=9.8e-30 Score=184.62 Aligned_cols=157 Identities=31% Similarity=0.567 Sum_probs=131.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (223)
|+++|.+|||||||++++.+..+...+.++....+ ...+.+++..+.+.+|||+|+..+..++..+++++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777765444 44566788888999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625 94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 173 (223)
+++++++.+.. .|+..+.... .++|+++|
T Consensus 80 ~~~~s~~~~~~--------------------------------------------------~~~~~i~~~~-~~~piilv 108 (174)
T smart00174 80 DSPASFENVKE--------------------------------------------------KWYPEVKHFC-PNTPIILV 108 (174)
T ss_pred CCHHHHHHHHH--------------------------------------------------HHHHHHHhhC-CCCCEEEE
Confidence 99999988852 2333333322 37899999
Q ss_pred ecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 174 GNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 174 ~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+||+|+... +.++.++...++...+. ++++|||+++.|++++|+.+++.
T Consensus 109 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 109 GTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred ecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 999999652 23677888889999986 89999999999999999999875
No 77
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=8.4e-30 Score=187.09 Aligned_cols=158 Identities=34% Similarity=0.537 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+||+++|.+|||||||++++.++.+...+.++.+.++.. .+... +..+.+.+|||+|+..+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999887777777665533 34454 6778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 91 YDIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 91 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
||+++..+++.+.. |+..+ ... ..+.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~-~~~~p 107 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEV---------------------------------------------------NHF-CPGTP 107 (187)
T ss_pred EECCCHHHHHHHHHHHHHHH---------------------------------------------------HHh-CCCCC
Confidence 99999999988853 43322 222 23689
Q ss_pred EEEeecccchhhc----cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHL----RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+... +.+..++.++++...+. +++++||+++.|++++|+.+++.
T Consensus 108 iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 108 IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 9999999998653 24567788899999988 89999999999999999999875
No 78
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.5e-29 Score=186.71 Aligned_cols=159 Identities=35% Similarity=0.655 Sum_probs=134.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+||+++|.+|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.+||++|+..+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5667777777777788888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||+++..+++.+..|++.+ .... .+.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~-~~~pi 108 (193)
T cd04118 81 YDLTDSSSFERAKFWVKEL---------------------------------------------------QNLE-EHCKI 108 (193)
T ss_pred EECCCHHHHHHHHHHHHHH---------------------------------------------------HhcC-CCCCE
Confidence 9999999998887665544 2221 26899
Q ss_pred EEeecccchhhc----cCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHL----RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+. +.+..++...++...+++++++||+++.|++++|+++.+.
T Consensus 109 ilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 109 YLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred EEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999998532 3455567788888888999999999999999999999864
No 79
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=2e-29 Score=182.83 Aligned_cols=158 Identities=32% Similarity=0.563 Sum_probs=132.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|+|||||++++.+..+...+.++. .+.....+.+++..+.+.+||++|+..+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877776665 4455556777888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|++++++++.+. .|+..+ .... .+.|+
T Consensus 80 d~~~~~sf~~~~~~~~~~~---------------------------------------------------~~~~-~~~pi 107 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEI---------------------------------------------------RKHN-PKAPI 107 (173)
T ss_pred ECCCHHHHHHHHHHHHHHH---------------------------------------------------HhhC-CCCCE
Confidence 999999998885 354433 2211 26899
Q ss_pred EEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++++||+|+.. .+.+..++...++.+.+. ++++|||+++.|++++|+.++-+
T Consensus 108 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 172 (173)
T cd04130 108 ILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILA 172 (173)
T ss_pred EEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999863 346677889999998887 89999999999999999998865
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.6e-29 Score=180.17 Aligned_cols=160 Identities=49% Similarity=0.853 Sum_probs=137.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+......+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888877777778888889999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++..+++.+..|++.+..+. ...+.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~~~~ 110 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYS--------------------------------------------------TNNDIVKM 110 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhC--------------------------------------------------CCCCCcEE
Confidence 9999999988886655443221 12478999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.. .....++...++...+++++++||++|+|++++++.+++.
T Consensus 111 iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 111 LVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999974 4566778888999999999999999999999999998764
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-29 Score=183.08 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=134.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+.+||+++|.+|||||||++++.+..+. ..+.++.+..+....+.+++..+.+.+||++|+..+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 77888887777767777888888999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.+++.+++.+..|++.+ .. ..+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~--~~~ 108 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKY---------------------------------------------------FM--LGE 108 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHh---------------------------------------------------cc--CCC
Confidence 9999999998888776544322 11 126
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhhC
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+|+++|+||+|+.+.+.....+...++...++. ++++||+++.|++++|+.+.+++
T Consensus 109 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 109 IPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 899999999999754444445566777777774 79999999999999999998753
No 82
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=2.5e-29 Score=187.84 Aligned_cols=168 Identities=42% Similarity=0.683 Sum_probs=140.0
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
+....+..+||+|+|.+|||||||+++|.+..+. .+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 3455667899999999999999999999998774 455777777777777788888899999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|||.++.+++..+..++. ..+...
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~--------------------------------------------------~~~~~~ 115 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWG--------------------------------------------------KEVELY 115 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHH--------------------------------------------------HHHHHh
Confidence 999999999999999988864222 112211
Q ss_pred c-CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 A-DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. ..+.|+++|+||+|+...+.+..++...++...++.++++||+++.|++++|++|.+.
T Consensus 116 ~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 116 STNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred cCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 2357899999999998767777788888888899999999999999999999999853
No 83
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=3.9e-29 Score=180.59 Aligned_cols=164 Identities=43% Similarity=0.790 Sum_probs=138.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
..+.++|+++|++|||||||++++....+...+.++.+.+.....+.+++..+.+.+||++|+..+......+++.++++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999998887777777777777777777888888999999999998888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||.++..+++.+..|+..+ ......+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l---------------------------------------------------~~~~~~~ 112 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREI---------------------------------------------------EQYANNK 112 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCC
Confidence 9999999988888887555544 3333346
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++++||+|+.+.+.+..+..+.+.......++++||+++.|++++|++|.+.
T Consensus 113 ~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 113 VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999998767777777777777777889999999999999999999863
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=2.8e-29 Score=182.20 Aligned_cols=160 Identities=28% Similarity=0.486 Sum_probs=131.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777766654 333445667888888999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+.++.+++.+.. .|...+... ..+.|++
T Consensus 80 ~~~~~~s~~~~~~--------------------------------------------------~~~~~l~~~-~~~~pii 108 (174)
T cd04135 80 SVVNPASFQNVKE--------------------------------------------------EWVPELKEY-APNVPYL 108 (174)
T ss_pred ECCCHHHHHHHHH--------------------------------------------------HHHHHHHhh-CCCCCEE
Confidence 9999999888852 222333322 3478999
Q ss_pred Eeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 172 LVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 172 vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+++||+|+.+. +.++.++...++...++ ++++|||+++.|++++|+.+++.+
T Consensus 109 vv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 109 LVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 99999998542 35677888888888886 799999999999999999998764
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=3.5e-29 Score=180.76 Aligned_cols=159 Identities=30% Similarity=0.518 Sum_probs=135.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||+..+..++..++++++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999998877777776544 3566677888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.+++++++.+..|...+.+. ....+.|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii 110 (168)
T cd04177 81 SVTSEASLNELGELREQVLRI--------------------------------------------------KDSDNVPMV 110 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hCCCCCCEE
Confidence 999999999998766655221 112378999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++||+|+.+.+....++...++++.+ ++++++||+++.|++++|++++.
T Consensus 111 iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 111 LVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred EEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 999999998777777778888888887 78999999999999999999875
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=2.8e-29 Score=179.01 Aligned_cols=159 Identities=56% Similarity=0.932 Sum_probs=139.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||+||+..+......+++++|++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998887788888888888888888889999999999988888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++++++..+..|+..+ ......+.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~p~i 109 (159)
T cd00154 81 DITNRESFENLDKWLKEL---------------------------------------------------KEYAPENIPII 109 (159)
T ss_pred ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCcEE
Confidence 999988888888655544 33332468999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++||+|+........++.+.+....+.+++++|++++.|++++|++|.+
T Consensus 110 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 110 LVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 99999999755667788899999888999999999999999999999864
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=5.1e-29 Score=177.77 Aligned_cols=154 Identities=21% Similarity=0.348 Sum_probs=125.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|++|||||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|+.. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988876655443 3333 45677888888999999999864 34678899999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++++++.+..|++++.... ...++|++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~--------------------------------------------------~~~~~pii 103 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYR--------------------------------------------------NISEIPLI 103 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCCCCEE
Confidence 9999999999987776663321 11368999
Q ss_pred Eeecccchh--hccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLR--HLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+. ..+.+..++.++++++. ++.+++|||+++.|++++|+.+++.
T Consensus 104 lvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 104 LVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 999999985 35678888888898776 5899999999999999999999864
No 88
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.6e-29 Score=180.89 Aligned_cols=160 Identities=31% Similarity=0.513 Sum_probs=130.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-ccccchhhhcCCcEEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER-YRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~ 91 (223)
||+++|++|||||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998877666666654333 45566788888999999999875 3445667899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++++++.+..|+..+... .. ...+.|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~------------------------------------------------~~-~~~~~pii 110 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREI------------------------------------------------KK-RDREIPVI 110 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHH------------------------------------------------hc-CCCCCCEE
Confidence 999999999998766655221 10 12368999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST-NVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+.+..++...++...+.+++++||+++. |++++|+.+++.
T Consensus 111 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 111 LVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred EEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHH
Confidence 999999998777788888889999899999999999995 999999999864
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=6.6e-29 Score=186.40 Aligned_cols=159 Identities=29% Similarity=0.402 Sum_probs=130.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc-CCcEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR-GAVGALL 89 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~ 89 (223)
+||+++|.+|||||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|+. ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 5555665546667777788888899999999987 234455667 9999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||++++.+++.+..|+..+... ....++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~--------------------------------------------------~~~~~~p 108 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRN--------------------------------------------------RQLEDRP 108 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCC
Confidence 99999999999888666655321 1123789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus 109 iilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 109 IILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred EEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999998777778888888888889999999999999999999999863
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=5e-28 Score=173.81 Aligned_cols=159 Identities=34% Similarity=0.557 Sum_probs=132.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||+++++...+...+.++.+.. .......++..+.+.+||+||+.++...+..+++.++++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877666665433 3445567778889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|+.++.++..+..|...+... ....++|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~pii 109 (164)
T cd04139 80 SITDMESFTATAEFREQILRV--------------------------------------------------KDDDNVPLL 109 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence 999999998888666655221 112479999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+|+||+|+.+.+....++...+....+++++++||+++.|++++|+++.+
T Consensus 110 iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 110 LVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred EEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999764556677778888888899999999999999999999875
No 91
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=5.6e-28 Score=175.53 Aligned_cols=159 Identities=31% Similarity=0.522 Sum_probs=128.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
.||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|+..+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777765444 345667788889999999999999888888899999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|+++.++++.+.. |...+ .... .+.|+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~~pi 108 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEV---------------------------------------------------KHFC-PNVPI 108 (175)
T ss_pred ECCCHHHHHHHHHHHHHHH---------------------------------------------------HhhC-CCCCE
Confidence 9999988887752 43322 2221 36899
Q ss_pred EEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 171 MLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 171 ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
++|+||+|+.+. ..+...+.+.++...+. ++++|||+++.|++++|++|.++|
T Consensus 109 ilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 109 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 999999998542 23445677777777764 799999999999999999999765
No 92
>KOG0081|consensus
Probab=99.96 E-value=4e-30 Score=174.22 Aligned_cols=166 Identities=42% Similarity=0.763 Sum_probs=147.9
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc---------CeEEEEEEEeCCCCcccccc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD---------QKTIKAQIWDTAGQERYRAI 76 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~G~~~~~~~ 76 (223)
-.+++.+|.+.+|.+|+||||++.+++.+++......++++++..+.+-++ +.++.+++|||+|++.++++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 457788999999999999999999999999999999999999988887662 35688999999999999999
Q ss_pred chhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625 77 TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW 156 (223)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (223)
...|++.+-++++.||++++.+|-++..|+.+++.++
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA------------------------------------------- 120 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA------------------------------------------- 120 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 9999999999999999999999999997877764421
Q ss_pred HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..++..+++++||+|+++.+.++.++..+++.++|+|++++||-++.|+++..+.+..
T Consensus 121 -------YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 121 -------YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred -------ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence 1236778999999999999999999999999999999999999999999998777654
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=6.1e-28 Score=172.61 Aligned_cols=159 Identities=37% Similarity=0.584 Sum_probs=134.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|++|||||||++++++..+...+.++.+ +........++..+.+.+||+||+..+...+..++++++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666655 5555666677777899999999999888999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.++++++..+..|+..+.+... ..+.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~--------------------------------------------------~~~~p~iv 109 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKD--------------------------------------------------DEDIPIVL 109 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC--------------------------------------------------CCCCcEEE
Confidence 9999998888866655533111 13789999
Q ss_pred eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++||+|+...+....+++..+....+.+++++|++++.|++++|++|.+.
T Consensus 110 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 110 VGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 99999998766777888889988888999999999999999999999864
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=2.8e-28 Score=175.88 Aligned_cols=156 Identities=19% Similarity=0.375 Sum_probs=120.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||++++....+. .+.++.+.++. .. ....+.+.+||++|+..+..++..+++++++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999887664 34566665543 22 235678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..++.++. ......++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~--------------------------------------------------~~~~~~~~ 111 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRII--------------------------------------------------NDREMRDA 111 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHh--------------------------------------------------cCHhhcCC
Confidence 9999999988888875544331 11111368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
|+++|+||+|+.+ ....+++..... ..++.++++||++|.|++++|++|.+
T Consensus 112 piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 112 LLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 9999999999864 245566666542 12346899999999999999999864
No 95
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.6e-27 Score=172.41 Aligned_cols=159 Identities=31% Similarity=0.569 Sum_probs=128.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||+++|++..+...+.++.. +........++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666654 334445567788889999999999988888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++.++..... .|+..+..... +.|++
T Consensus 80 d~~~~~s~~~~~~--------------------------------------------------~~~~~~~~~~~-~~p~i 108 (171)
T cd00157 80 SVDSPSSFENVKT--------------------------------------------------KWIPEIRHYCP-NVPII 108 (171)
T ss_pred ECCCHHHHHHHHH--------------------------------------------------HHHHHHHhhCC-CCCEE
Confidence 9999888776642 23333333322 79999
Q ss_pred Eeecccchhhcc-----------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLR-----------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.... .+..++..++....+. +++++||++++|++++|++|+++
T Consensus 109 vv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 171 (171)
T cd00157 109 LVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIRA 171 (171)
T ss_pred EEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhhC
Confidence 999999987543 2356677888888887 89999999999999999999864
No 96
>KOG0395|consensus
Probab=99.96 E-value=5.4e-28 Score=176.86 Aligned_cols=162 Identities=34% Similarity=0.513 Sum_probs=146.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|+|||+|..++....+...+.|+++ +.+.+.+.+++..+.+.++||+|+.++..+...+++.++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 368999999999999999999999999999999997 5567788899999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
||++++..+|+.+..+++.+.+.. ....+|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~--------------------------------------------------~~~~~P 110 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVK--------------------------------------------------GRDDVP 110 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--------------------------------------------------CcCCCC
Confidence 999999999999997777663321 123589
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+...+.+..++.+.++..++++++++||+.+.+++++|..|.+.
T Consensus 111 ivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 111 IILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred EEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999998863
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=1.2e-28 Score=177.06 Aligned_cols=152 Identities=20% Similarity=0.318 Sum_probs=120.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (223)
|+++|.+|||||||++++.+..+...+.++.+... ..+++..+.+.+||++|+..+..++..+++++|++++|+|.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999887777777776542 33455678899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625 94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 173 (223)
+++.++.....|+..+ .... .++|+++|
T Consensus 78 t~~~s~~~~~~~l~~~---------------------------------------------------~~~~-~~~piilv 105 (164)
T cd04162 78 ADSERLPLARQELHQL---------------------------------------------------LQHP-PDLPLVVL 105 (164)
T ss_pred CCHHHHHHHHHHHHHH---------------------------------------------------HhCC-CCCcEEEE
Confidence 9988888777554433 2111 37899999
Q ss_pred ecccchhhccCCCh----HHHHHHHHHcCCeEEEeecCC------CCCHHHHHHHHHh
Q psy15625 174 GNKSDLRHLRAVPA----DEAKTFAERNNLSFIETSALD------STNVETAFQNILT 221 (223)
Q Consensus 174 ~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~i~~ 221 (223)
+||+|+...+.... .+...++.+.++.++++||++ ++|++++|+.++.
T Consensus 106 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 106 ANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 99999876443221 134555566788899999888 9999999999874
No 98
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3.3e-27 Score=176.95 Aligned_cols=165 Identities=33% Similarity=0.585 Sum_probs=138.6
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
+.......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+++.
T Consensus 2 ~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~ 81 (215)
T PTZ00132 2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK 81 (215)
T ss_pred ccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc
Confidence 44566778999999999999999999988888888888998888888777778888999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
++++++|||+++..++..+..|+..+.. .
T Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~ 110 (215)
T PTZ00132 82 GQCAIIMFDVTSRITYKNVPNWHRDIVR---------------------------------------------------V 110 (215)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------h
Confidence 9999999999999999988866665522 1
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. .+.|+++++||+|+.+ +.... +...++...++.++++||+++.|+++.|.+|++.
T Consensus 111 ~-~~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 111 C-ENIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred C-CCCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 3689999999999864 23333 3345677788899999999999999999999875
No 99
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=2.7e-27 Score=172.75 Aligned_cols=160 Identities=33% Similarity=0.511 Sum_probs=131.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
.||+++|.+|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++..++..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887666666554333 455566777788999999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++..+++.+..|++.+.+ .....+.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~p~i 110 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILD--------------------------------------------------MLGKESVPIV 110 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHH--------------------------------------------------hcCCCCCCEE
Confidence 99999999888866554422 1122468999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+...+.+..++...++...+.+++++||+++.|+.++|+++.+.
T Consensus 111 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 111 LVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred EEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999997666666667778888888899999999999999999999764
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.7e-27 Score=175.23 Aligned_cols=159 Identities=31% Similarity=0.498 Sum_probs=127.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||++++....+...+.++.. +.....+.+.+..+.+++||++|+..+..++..+++++|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776656553 4455566677777899999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.+++.+++.+..|+..+... ....++|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~piil 109 (198)
T cd04147 80 VDDPESFEEVERLREEILEV--------------------------------------------------KEDKFVPIVV 109 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCcEEE
Confidence 99999999888666544221 1123689999
Q ss_pred eecccchhh-ccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRH-LRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+||+|+.+ .+.+..++..+... ..+.+++++||+++.|++++|+++++.
T Consensus 110 v~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 110 VGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred EEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 999999865 34455545444443 456789999999999999999999864
No 101
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=6.4e-27 Score=171.68 Aligned_cols=158 Identities=35% Similarity=0.568 Sum_probs=127.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
.||+++|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||++|+..+......+++.+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998777666656554333 345556777788999999999888877777889999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 92 DIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
++++.++++.+. .|+..+ .... .+.|+
T Consensus 81 ~i~~~~s~~~~~~~~~~~i---------------------------------------------------~~~~-~~~pi 108 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEV---------------------------------------------------RRYC-PNVPV 108 (187)
T ss_pred ECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCE
Confidence 999999988885 344433 3222 25899
Q ss_pred EEeecccchhh----------ccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRH----------LRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+ .+.+..++...++.+.+. ++++|||+++.|++++|+++.+.
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 109 ILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred EEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 99999999854 244556778888888885 79999999999999999999864
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.7e-27 Score=172.10 Aligned_cols=153 Identities=21% Similarity=0.373 Sum_probs=119.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||++++.+..+.. +.++.+..+. . +....+.+.+||+||+..+...+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999986643 5566554442 2 33356789999999999999899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.++++++..+..|+..+.+ .....+.|+++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~piil 105 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLT--------------------------------------------------EKELRDALLLI 105 (169)
T ss_pred CCcHHHHHHHHHHHHHHhc--------------------------------------------------ChhhCCCCEEE
Confidence 9999999888866554422 11113579999
Q ss_pred eecccchhhccCCChHHHHHHHHHcC------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAERNN------LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+||+|+.+ ....++.++++...+ +.+++|||+++.|++++|++|.+.
T Consensus 106 v~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 106 FANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred EEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999964 355666666654222 368899999999999999999863
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=1.9e-27 Score=170.10 Aligned_cols=153 Identities=20% Similarity=0.379 Sum_probs=114.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++..+.+. .+.++.+.+.. .+. ...+.+.+||++|+..+..++..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877775 35566665442 222 34678999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++..++.....++..+.. .....+.|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~pii 105 (159)
T cd04150 76 DSNDRERIGEAREELQRMLN--------------------------------------------------EDELRDAVLL 105 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHh--------------------------------------------------cHHhcCCCEE
Confidence 99998888888755443311 1111358999
Q ss_pred EeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++||+|+.+. ...++...... ..++.++++||++|+|++++|++|.+
T Consensus 106 lv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 106 VFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99999998642 22333222221 12345789999999999999999864
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=2.2e-27 Score=172.15 Aligned_cols=158 Identities=18% Similarity=0.381 Sum_probs=120.4
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..+..+||+++|++|||||||++++.+..+. .+.++.+.. ...+.++ .+.+.+||+||+..+..++..+++++++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3445689999999999999999999987553 344555433 3334443 4688999999999888888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.++..++.....|+..+.. .....
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~ 114 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQ--------------------------------------------------EERLA 114 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------Chhhc
Confidence 9999999999888887755554311 11123
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++|+++|+||+|+.+. ...++...+.. ..+++++++||++|.|++++|+++++
T Consensus 115 ~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 115 GATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 6899999999999752 24455555543 24568999999999999999999864
No 105
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=2.9e-27 Score=172.45 Aligned_cols=157 Identities=19% Similarity=0.336 Sum_probs=116.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
+..+||+++|.+|||||||++++..+.+. .+.++++.++. . ++...+.+.+||+||+..+..++..+++++|+++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999887764 34566665442 2 3345678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++.+++..+..++..+. ......++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l--------------------------------------------------~~~~~~~~ 119 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRML--------------------------------------------------NEDELRDA 119 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHh--------------------------------------------------cCHhhCCC
Confidence 9999999988877764443321 11111368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHc-----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERN-----NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++++||+|+++. ...++......-. .+.++++||++|+|++++|++|.+.
T Consensus 120 piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 120 VLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 99999999998753 3333433332111 1235689999999999999999763
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=6.2e-27 Score=168.66 Aligned_cols=158 Identities=31% Similarity=0.383 Sum_probs=117.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.++.+...+..+ . ........+++..+.+.+||++|...+...+..+++.++++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-L-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-c-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886554322 1 222333445667789999999999887777777789999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|++++.+++.+.. .|...+.... .+.|++
T Consensus 79 d~~~~~s~~~~~~--------------------------------------------------~~~~~i~~~~-~~~pvi 107 (166)
T cd01893 79 SVDRPSTLERIRT--------------------------------------------------KWLPLIRRLG-VKVPII 107 (166)
T ss_pred ECCCHHHHHHHHH--------------------------------------------------HHHHHHHHhC-CCCCEE
Confidence 9999999888752 2333333332 278999
Q ss_pred EeecccchhhccCC--ChHHHHHHHHHc-C-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAV--PADEAKTFAERN-N-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+.. ..++...+..+. + .++++|||+++.|++++|+.+.+.
T Consensus 108 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 108 LVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred EEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence 99999999764432 123333333333 2 379999999999999999998765
No 107
>KOG0083|consensus
Probab=99.95 E-value=4.3e-29 Score=164.48 Aligned_cols=156 Identities=46% Similarity=0.761 Sum_probs=138.1
Q ss_pred EEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625 15 VLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93 (223)
Q Consensus 15 ~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (223)
+++|.+++|||+|+-++....+... ...++++++..+.+..++..+.+++|||.|++.++++...|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3689999999999998887766543 458889999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625 94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 173 (223)
.+.-+|++++.|+.++- ++....+.+.++
T Consensus 81 ankasfdn~~~wlsei~---------------------------------------------------ey~k~~v~l~ll 109 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIH---------------------------------------------------EYAKEAVALMLL 109 (192)
T ss_pred ccchhHHHHHHHHHHHH---------------------------------------------------HHHHhhHhHhhh
Confidence 99999999997766653 333335667899
Q ss_pred ecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 174 GNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 174 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+||||+..++.+..++.+.+++.+++|+.++||++|.|++-.|-.|.+
T Consensus 110 gnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 110 GNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred ccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence 999999988999999999999999999999999999999999887764
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=5.5e-27 Score=170.24 Aligned_cols=157 Identities=21% Similarity=0.351 Sum_probs=117.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
++.+||+++|.+|||||||++++..+.+. .+.++.+.++.. .. ...+.+.+||++|+..+..++..+++++++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 44699999999999999999999877663 355666655432 22 24578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.+++....++..+.. .....++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~--------------------------------------------------~~~~~~~ 115 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLN--------------------------------------------------EDELRDA 115 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhh--------------------------------------------------CHhhcCC
Confidence 99999999888888765554321 1111368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+. ...+++..... ...+.++++||++|.|++++|++|.+.
T Consensus 116 piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 116 VILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred cEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999998652 22333333221 123347789999999999999998764
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=7.4e-27 Score=170.75 Aligned_cols=160 Identities=21% Similarity=0.368 Sum_probs=121.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.++||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|+..+..++..+++++++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877543 466665555544443 346789999999999988889999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++..+++.+..|+.++... ....++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~--------------------------------------------------~~~~~~ 110 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRF--------------------------------------------------SENQGV 110 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhh--------------------------------------------------hhcCCC
Confidence 999999988887777555544221 111368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+ ....++...+... .+++++++||+++.|++++|++|.+.
T Consensus 111 p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 111 PVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred cEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 9999999999864 2344445444321 13468999999999999999998753
No 110
>KOG0393|consensus
Probab=99.95 E-value=1.2e-27 Score=171.31 Aligned_cols=162 Identities=33% Similarity=0.567 Sum_probs=145.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
..+|+.++|..++|||+|+-.+..+.++..+.|++- +-+...+.++ ++.+.+.+|||.|+++|..++...+..+|.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 568999999999999999999999999999999996 5557777785 99999999999999999999988999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
++|++.++.+++++.. +|+.++..+.+ +.
T Consensus 82 ~cfsv~~p~S~~nv~~--------------------------------------------------kW~pEi~~~cp-~v 110 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKS--------------------------------------------------KWIPEIKHHCP-NV 110 (198)
T ss_pred EEEEcCChhhHHHHHh--------------------------------------------------hhhHHHHhhCC-CC
Confidence 9999999999999863 77788877774 89
Q ss_pred eEEEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 169 VIMLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 169 p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
|+++|++|.||.+ ...++.++.+.++.+.| ..+++|||+++.|++++|+..++++
T Consensus 111 piiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 111 PIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred CEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 9999999999974 23678899999999999 5799999999999999999988754
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.7e-26 Score=170.09 Aligned_cols=167 Identities=22% Similarity=0.404 Sum_probs=128.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-----CeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-----QKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+||+++|.+|||||||++++.++.+...+.++++.++..+.+.++ +..+.+.+||++|+..+..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888898887877777664 467899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||+++.++++.+..|+.++............. .+ .. .-......
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~-----------------------~~-------~~--~~~~~~~~ 128 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVT-----------------------NG-------DY--DSEQFGGN 128 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccc-----------------------cc-------cc--cccccCCC
Confidence 999999999999999999999886643211000000 00 00 00111224
Q ss_pred CceEEEeecccchhhccCCChH----HHHHHHHHcCCeEEEeecCCCC
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPAD----EAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
++|+++|+||+|+.+.+.+..+ ....++.+.+++.++.+++...
T Consensus 129 ~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 129 QIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred CceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 6899999999999765555444 3456778899998888888654
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=2.4e-26 Score=167.82 Aligned_cols=157 Identities=19% Similarity=0.357 Sum_probs=115.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|++|||||||++++..+.+.. +.++.+.++. .+ ....+.+.+||++|+..+..++..+++++|+++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998777654 4566655443 22 335578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++.+++.....++..+. ......++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~--------------------------------------------------~~~~~~~~ 119 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERML--------------------------------------------------SEDELRDA 119 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHH--------------------------------------------------hCHhhcCC
Confidence 9999999888887764444331 11111368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||.|+.+ ....+++..... ...+.++++||++|.|++++|++|.+.
T Consensus 120 piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 120 VLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 9999999999864 223333322211 112346789999999999999999863
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.7e-26 Score=165.62 Aligned_cols=155 Identities=19% Similarity=0.354 Sum_probs=114.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+|+++|.+|||||||++++.+... ...+.++.+..... +....+.+.+||+||+..+..++..++++++++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44555666544322 2335678999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++..++.....|+..+.+. ......++|++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~p~i 108 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNH------------------------------------------------PDIKHRRVPIL 108 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcC------------------------------------------------cccccCCCCEE
Confidence 999988887777555544211 01112478999
Q ss_pred EeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+|+||+|+.+.. ..++...... ...++++++||+++.|++++|++|.+
T Consensus 109 iv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 109 FFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 999999986522 2223222211 12345899999999999999999864
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=3.3e-26 Score=166.07 Aligned_cols=155 Identities=23% Similarity=0.371 Sum_probs=116.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|+|||||+++++...+.. ..++.+.++. .... ..+.+.+||+||+..+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999887754 4466554442 2222 35789999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.++++++.....++..+.+ .....++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~--------------------------------------------------~~~~~~~p 118 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLA--------------------------------------------------HEDLRKAV 118 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHh--------------------------------------------------chhhcCCC
Confidence 9999998877777654443311 11123689
Q ss_pred EEEeecccchhhccCCChHHHHH-HH----HHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKT-FA----ERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++++||+|+.+ ....++..+ +. ...++++++|||+++.|++++|++|.+
T Consensus 119 ~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 119 LLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 999999999865 223333322 22 224567999999999999999999875
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=1.3e-26 Score=167.13 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=115.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
+|+++|.+|||||||++++.+. +...+.++.+... ..+.. ..+.+.+||+||+..+..++..++++++++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 5556667766542 23333 45788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.++..++..+..|+..+.. .....++|+++
T Consensus 76 ~s~~~s~~~~~~~l~~l~~--------------------------------------------------~~~~~~~pili 105 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQ--------------------------------------------------HPRVSGKPILV 105 (167)
T ss_pred CCchhHHHHHHHHHHHHHc--------------------------------------------------CccccCCcEEE
Confidence 9999888888766554422 11113689999
Q ss_pred eecccchhhccCCChHHH------HHHHHHc--CCeEEEeecCCC------CCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEA------KTFAERN--NLSFIETSALDS------TNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~------~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 222 (223)
|+||+|+++.+. ..+. ..++.+. .+.+++|||++| .|+++.|+||.++
T Consensus 106 v~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~~ 167 (167)
T cd04161 106 LANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLAA 167 (167)
T ss_pred EEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhcC
Confidence 999999976331 2221 2233222 346888999998 8999999999764
No 116
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=6.5e-26 Score=163.44 Aligned_cols=153 Identities=22% Similarity=0.409 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccc------ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFN------LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+|+++|++|+|||||++++.+.... ..+.++.+.+. ..+.+ ....+.+||+||+..+..++..+++++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999875332 12233433333 23333 35689999999999999888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.+++.++.....++..+. ......
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~ 106 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVL--------------------------------------------------RNEALE 106 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHH--------------------------------------------------hChhhc
Confidence 999999998877777665544331 111123
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++|+++++||+|+.+. ...++...+... .+++++++||++|.|+++++++|.+
T Consensus 107 ~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 107 GVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 6899999999998652 333444444332 2457999999999999999999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=3.8e-26 Score=163.52 Aligned_cols=154 Identities=23% Similarity=0.417 Sum_probs=113.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
+|+++|.+|||||||++++.+..+.. ..++.+.+. ..+.. ...+.+.+||++|+..+...+..++++++++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988753 345555443 23333 245689999999999888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.+++.++.....|+.++.. .....+.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~piil 106 (160)
T cd04156 77 SSDEARLDESQKELKHILK--------------------------------------------------NEHIKGVPVVL 106 (160)
T ss_pred CCcHHHHHHHHHHHHHHHh--------------------------------------------------chhhcCCCEEE
Confidence 9998877777655443311 11113689999
Q ss_pred eecccchhhccCCChHHHHHH------HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTF------AERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+||+|+... ...++.... ....++++++|||++++|++++|++|.+.
T Consensus 107 v~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~~ 160 (160)
T cd04156 107 LANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLASF 160 (160)
T ss_pred EEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhcC
Confidence 9999998642 223333222 11234579999999999999999999763
No 118
>KOG4252|consensus
Probab=99.94 E-value=5.9e-28 Score=166.92 Aligned_cols=169 Identities=32% Similarity=0.582 Sum_probs=155.6
Q ss_pred CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
|+|.++..+.-+|++++|..++||||++++++.+-+...+..+++.++....+.+....+...+||++|+.++..+...|
T Consensus 10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH
Confidence 67777888888999999999999999999999999999999999999988888888888888999999999999999999
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++++.+.++||+.++..+|+....|++.+...+
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~----------------------------------------------- 122 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKET----------------------------------------------- 122 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 999999999999999999999998877664422
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.++|.++|-||+|+.+...+...+.+.+++..++.++.+|++...|+..+|.+|++
T Consensus 123 -----~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 123 -----ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred -----ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 27899999999999998999999999999999999999999999999999999875
No 119
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=3.2e-25 Score=160.78 Aligned_cols=158 Identities=28% Similarity=0.471 Sum_probs=122.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
....+||+++|++||||||+++++....... ..|+.+.+.. .+.+ ....+.+||.+|+..++++|..++++++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeee--CcEEEEEEeccccccccccceeecccccee
Confidence 3678999999999999999999999876543 4466554443 3333 446789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.++.+.+......+..+ +......+
T Consensus 86 IfVvDssd~~~l~e~~~~L~~l--------------------------------------------------l~~~~~~~ 115 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKEL--------------------------------------------------LNDPELKD 115 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHH--------------------------------------------------HTSGGGTT
T ss_pred EEEEecccceeecccccchhhh--------------------------------------------------cchhhccc
Confidence 9999999988877776544433 22222247
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHH------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAER------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|++|++||+|+.+ ....+++...... ..+.++.|||++|+|+.+.++||.+.
T Consensus 116 ~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 116 IPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 89999999999875 3455555554432 34569999999999999999999874
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=1.5e-25 Score=164.94 Aligned_cols=157 Identities=20% Similarity=0.329 Sum_probs=118.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
....||+++|++|||||||++++.+..+. .+.++.+.. ...+.++ ...+.+||+||+..+...+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999987764 344554432 2333343 467899999999888888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++..++.....++..+. ......+.
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~--------------------------------------------------~~~~~~~~ 121 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLL--------------------------------------------------SDEELANV 121 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHH--------------------------------------------------cCccccCC
Confidence 9999998877776664444331 11112368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER----------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++++||+|+.. .+..++.+..... ..+++++|||++++|++++|++|.+.
T Consensus 122 pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 122 PFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 9999999999864 4556666665542 22468999999999999999999874
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1.3e-25 Score=160.55 Aligned_cols=153 Identities=22% Similarity=0.368 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|+|||||++++....+.. ..++.+.+.. . +.+....+.+||+||+..+..++..++++++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 3455444432 2 23345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.+++.++.....++..+ +......++|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~piii 105 (158)
T cd04151 76 STDRDRLGTAKEELHAM--------------------------------------------------LEEEELKGAVLLV 105 (158)
T ss_pred CCCHHHHHHHHHHHHHH--------------------------------------------------HhchhhcCCcEEE
Confidence 99887766554333221 1111123689999
Q ss_pred eecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++||+|+.+.. ...+...... ..+.+++++||+++.|++++|++|+++
T Consensus 106 v~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 158 (158)
T cd04151 106 FANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVNT 158 (158)
T ss_pred EEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhcC
Confidence 99999986422 2233322211 123469999999999999999999864
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=1.5e-25 Score=160.07 Aligned_cols=152 Identities=21% Similarity=0.407 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
||+++|.+|||||||++++++... ....++.+.+... +.+ ....+.+||+||+..+...+..++++++++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999874 3444555544332 323 35689999999999998899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
.+++.++.....++..+.. .....+.|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~piii 105 (158)
T cd00878 76 SSDRERIEEAKEELHKLLN--------------------------------------------------EEELKGVPLLI 105 (158)
T ss_pred CCCHHHHHHHHHHHHHHHh--------------------------------------------------CcccCCCcEEE
Confidence 9999888887755554322 11124789999
Q ss_pred eecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++||+|+.... ..++....... ..++++++||+++.|++++|++|..
T Consensus 106 v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 106 FANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999987532 23333333322 3457999999999999999999874
No 123
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=7.8e-25 Score=153.22 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
++|+++|.||||||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~y-------------------- 58 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIY-------------------- 58 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----S--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcc--------------------
Confidence 5899999999999999999999998777777777777666776655 578999999942
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
+.......+.+. .+.+. ....|+++.++|++....-.. ...+....++|++
T Consensus 59 sl~~~s~ee~v~--~~~l~---------------------~~~~D~ii~VvDa~~l~r~l~------l~~ql~e~g~P~v 109 (156)
T PF02421_consen 59 SLSSKSEEERVA--RDYLL---------------------SEKPDLIIVVVDATNLERNLY------LTLQLLELGIPVV 109 (156)
T ss_dssp SSSSSSHHHHHH--HHHHH---------------------HTSSSEEEEEEEGGGHHHHHH------HHHHHHHTTSSEE
T ss_pred cCCCCCcHHHHH--HHHHh---------------------hcCCCEEEEECCCCCHHHHHH------HHHHHHHcCCCEE
Confidence 222222222222 11111 135777888888776422211 2222223479999
Q ss_pred EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 219 (223)
+++||+|+...+.+. -+...+.+..|++++++||++++|++++++.|
T Consensus 110 vvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 110 VVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred EEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 999999998755433 35778888899999999999999999999875
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=8.7e-25 Score=159.91 Aligned_cols=157 Identities=18% Similarity=0.278 Sum_probs=116.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...++|+++|.+|||||||++++.+..+.. +.++.+.+ ...+.. ..+.+.+||+||+..+...+..+++++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999876643 23443332 222333 3468899999999988889999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++.....++..+.+ .....++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~--------------------------------------------------~~~~~~~ 119 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLS--------------------------------------------------DEELATV 119 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHc--------------------------------------------------ChhhcCC
Confidence 99999998887777654443311 1111368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.. ..+.++++....- ....+++|||++++|++++++||...
T Consensus 120 piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 120 PFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 9999999999864 3455555544311 13359999999999999999999864
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=168.03 Aligned_cols=150 Identities=24% Similarity=0.453 Sum_probs=119.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-------------eEEEEEEEeCCCCcccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-------------KTIKAQIWDTAGQERYRAI 76 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~G~~~~~~~ 76 (223)
..+||+++|..|||||||++++.++.+...+.++++.++..+.+.+++ ..+.+++||++|++.+..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 358999999999999999999999998888889998888777666642 4678999999999999999
Q ss_pred chhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625 77 TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW 156 (223)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (223)
+..++++++++++|||+++..+++.+..|++.+........
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~--------------------------------------- 140 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSA--------------------------------------- 140 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhccccc---------------------------------------
Confidence 99999999999999999999999999988887755321000
Q ss_pred HHHh-hhccCCCceEEEeecccchhhcc---C---CChHHHHHHHHHcCC
Q psy15625 157 LREL-RDHADQNIVIMLVGNKSDLRHLR---A---VPADEAKTFAERNNL 199 (223)
Q Consensus 157 ~~~~-~~~~~~~~p~ivv~nK~Dl~~~~---~---~~~~~~~~~~~~~~~ 199 (223)
... ......++|++||+||+|+...+ . ...++.++++.++|+
T Consensus 141 -p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 141 -PLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred -ccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 000 00011258999999999997532 2 357899999999875
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.3e-24 Score=171.23 Aligned_cols=161 Identities=17% Similarity=0.083 Sum_probs=113.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccch---hhhcCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITS---AYYRGA 84 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~---~~~~~~ 84 (223)
..|+|+|.||||||||+++|++........+..+..+....+.+. ....+.+||+||..+.. .+.. ..++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 369999999999999999999876544444555555555555443 23468999999964322 2222 245568
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
+++++|+|+++.++++.+..|.+++..+.+ .
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-------------------------------------------------~ 268 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSP-------------------------------------------------E 268 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-------------------------------------------------h
Confidence 888888888877677777766555533211 0
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
-.++|+++|+||+|+.+......++.+.+....+.+++++||++++|+++++++|.+.
T Consensus 269 L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 269 LADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred cccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 1368999999999997544333344555555667889999999999999999998764
No 127
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=4e-24 Score=154.82 Aligned_cols=138 Identities=36% Similarity=0.699 Sum_probs=120.0
Q ss_pred CcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhc
Q psy15625 34 NEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 113 (223)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 113 (223)
+.+.+.+.++++.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~-- 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN-- 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH--
Confidence 356677889999899888888899999999999999999999999999999999999999999999999866665422
Q ss_pred CCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHH
Q psy15625 114 DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF 193 (223)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 193 (223)
....+.|+++|+||+|+.+.+.+..++...+
T Consensus 81 -------------------------------------------------~~~~~~piilVgNK~DL~~~~~v~~~e~~~~ 111 (176)
T PTZ00099 81 -------------------------------------------------ERGKDVIIALVGNKTDLGDLRKVTYEEGMQK 111 (176)
T ss_pred -------------------------------------------------hcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 2223689999999999987667888888899
Q ss_pred HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 194 AERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 194 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+...+..++++||+++.|++++|++|++.
T Consensus 112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 112 AQEYNTMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 88889999999999999999999999863
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.7e-24 Score=156.46 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=106.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc----ccccchhh---hcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER----YRAITSAY---YRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~~ 85 (223)
+|+++|.+|||||||+++|.+........+..+.+.....+.+++ ...+.+|||||+.+ ...+...+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654322222222233233333333 24789999999642 12233333 34588
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 86 GALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 86 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
++++|+|.++. ++++.+..|.+.+..... .
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-------------------------------------------------~ 111 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNP-------------------------------------------------E 111 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCc-------------------------------------------------c
Confidence 88888888887 677777766555432110 0
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.... .+....+... .+.+++++||+++.|++++|+++.++
T Consensus 112 ~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 112 LLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 136899999999998654332 3344444545 36789999999999999999999875
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=3.3e-24 Score=156.24 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc-------cccccc------cceeeeEEEEEEE-----cCeEEEEEEEeCCCCcccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF-------NLESKS------TIGVEFATRSIQV-----DQKTIKAQIWDTAGQERYR 74 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~~~ 74 (223)
+|+++|.+|+|||||+++|++... ...+.+ +.+.+........ ++..+.+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 699999999999999999987421 111111 1223333333222 5567889999999999998
Q ss_pred ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625 75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154 (223)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (223)
.....+++++|++++|+|.++..+......|.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~------------------------------------------------ 113 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY------------------------------------------------ 113 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH------------------------------------------------
Confidence 88888999999999999998876655554221
Q ss_pred HHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... ..++|+++|+||+|+.+.+ ..+....++...++ .++++||++|.|++++|++|.+.
T Consensus 114 ---~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 114 ---LAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred ---HHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 111 1367999999999986421 22233455555565 48999999999999999999864
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=1.4e-24 Score=154.79 Aligned_cols=153 Identities=23% Similarity=0.424 Sum_probs=115.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (223)
|+++|++|||||||++++.+..+...+.++.+.+... ...+ .+.+.+||+||+..+...+..+++.++++++|+|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888777777655533 2233 37899999999999998899999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625 94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 173 (223)
++..++.....++..+.. .....++|+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~p~iiv 107 (159)
T cd04159 78 ADRTALEAAKNELHDLLE--------------------------------------------------KPSLEGIPLLVL 107 (159)
T ss_pred CCHHHHHHHHHHHHHHHc--------------------------------------------------ChhhcCCCEEEE
Confidence 988777766644443311 111236899999
Q ss_pred ecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 174 GNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 174 ~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+||+|+.+.. ..++..... ...+++++++|++++.|+++++++|.+.
T Consensus 108 ~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (159)
T cd04159 108 GNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIKH 159 (159)
T ss_pred EeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhhC
Confidence 9999986532 122222111 1234678999999999999999999763
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=3.8e-24 Score=154.37 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch---------hhhcC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS---------AYYRG 83 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~---------~~~~~ 83 (223)
+|+++|.+|+|||||++++++..+.....+..+.+..... .....+.+.+|||||+.+...... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999998764332222222222222 233457899999999743111000 00112
Q ss_pred CcEEEEEEeCCCcccH--HHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 84 AVGALLVYDIAKHLTY--ENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
.|++++|+|.++..++ +... .|+..+.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~---------------------------------------------------~~~~~l~ 108 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQL---------------------------------------------------SLFEEIK 108 (168)
T ss_pred cCcEEEEEeCCcccccchHHHH---------------------------------------------------HHHHHHH
Confidence 4566666666554432 2222 3444443
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .+.|+++|+||+|+.+...+. +...+....+.+++++||+++.|++++|+++.+.
T Consensus 109 ~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 109 PLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred hhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHH
Confidence 322 368999999999996533322 2445555567789999999999999999999864
No 132
>KOG0073|consensus
Probab=99.92 E-value=1.3e-23 Score=143.41 Aligned_cols=157 Identities=18% Similarity=0.361 Sum_probs=123.4
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+..++|.++|..|+||||+++++.+.... .-.|+.+.++.+. ..+.+.+++||.+|+...++.|..||...|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 344899999999999999999999998743 3336655555443 33567899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+.|+|+++...++.....+..+.. ...-.+
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~--------------------------------------------------eerlaG 117 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLV--------------------------------------------------EERLAG 117 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHh--------------------------------------------------hhhhcC
Confidence 999999998888888765554421 111236
Q ss_pred ceEEEeecccchhhccCCChH------HHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPAD------EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.|+++++||.|+.+ .++.+ +...++....++++-||+.+|+++.+-++|++.
T Consensus 118 ~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 118 APLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred CceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHH
Confidence 89999999999974 23333 344555667889999999999999999999874
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=4.3e-24 Score=153.33 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc---ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
.|+++|.+|||||||+++|++.. ++....+..+.+.....+.+.. ...+.+|||||+..+......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999999643 2222223334444444444432 4588999999998776655667889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|..+........ .+..+... ...|
T Consensus 81 V~d~~~~~~~~~~~----------------------------------------------------~~~~~~~~--~~~~ 106 (164)
T cd04171 81 VVAADEGIMPQTRE----------------------------------------------------HLEILELL--GIKR 106 (164)
T ss_pred EEECCCCccHhHHH----------------------------------------------------HHHHHHHh--CCCc
Confidence 99987632111111 00111111 1248
Q ss_pred EEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 170 IMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++++||+|+.+... ...++..+.... .+.+++++||+++.|++++++.+.+
T Consensus 107 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 107 GLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 999999999865221 112333444433 4678999999999999999999865
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=2.6e-23 Score=147.94 Aligned_cols=158 Identities=40% Similarity=0.563 Sum_probs=120.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987777777777777776677777668899999999999988888889999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 91 YDIAKH-LTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 91 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|.... .++.... .|...+ ......+.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~ 109 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEI---------------------------------------------------IHHAESNV 109 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHH---------------------------------------------------HHhcccCC
Confidence 998766 4444433 232222 22222268
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
|+++++||+|+.... ........+......+++++||+++.|+.++|++|-
T Consensus 110 p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 110 PIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred cEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 999999999996533 233333333344456799999999999999999863
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=9.2e-24 Score=157.09 Aligned_cols=157 Identities=21% Similarity=0.176 Sum_probs=102.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--h------hh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--S------AY 80 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~------~~ 80 (223)
++.++|+++|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+||+||..+..... . ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999998754443344344444444444443 278999999963221100 0 11
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
+..+|++++|+|.+++.+..... .|...+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~---------------------------------------------------~~~~~l 146 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIE---------------------------------------------------TVEKVL 146 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHH---------------------------------------------------HHHHHH
Confidence 34555555555555544443333 344444
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
......++|+++|+||+|+.+.... .......+.+++++||+++.|+++++++|.+.
T Consensus 147 ~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 147 KELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred HHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 4433346899999999998652221 13344556789999999999999999999864
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=1.7e-23 Score=151.63 Aligned_cols=153 Identities=23% Similarity=0.367 Sum_probs=111.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...++|+++|++|||||||++++.+..+.. ..++.+.+.. .+... ...+.+||++|+..+...+..+++++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 347999999999999999999999876532 3455554332 33333 467899999999888888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++..++.....++..+ +......++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~ 116 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVEL--------------------------------------------------LEEEKLAGV 116 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHH--------------------------------------------------HhChhhcCC
Confidence 999999877776665443322 111122368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCC--------eEEEeecCCCCCHHHHHHHHHh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL--------SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
|+++++||+|+.+.. ..+ .+....++ +++++||++++|++++|++|++
T Consensus 117 p~ivv~nK~D~~~~~--~~~---~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 117 PVLVFANKQDLATAA--PAE---EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CEEEEEECCCCccCC--CHH---HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 999999999986421 122 22333332 4789999999999999999975
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=3.5e-24 Score=150.39 Aligned_cols=134 Identities=22% Similarity=0.238 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc-----cccccchhhhcCCcEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE-----RYRAITSAYYRGAVGA 87 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~~ 87 (223)
||+++|.+|||||||++++.+..+. +.++.+.+ +. -.+|||||+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 22222211 11 1689999962 1222211 35667777
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.+++.++... .|.... .
T Consensus 67 ilv~d~~~~~s~~~~----------------------------------------------------~~~~~~------~ 88 (142)
T TIGR02528 67 ALVQSATDPESRFPP----------------------------------------------------GFASIF------V 88 (142)
T ss_pred EEEecCCCCCcCCCh----------------------------------------------------hHHHhc------c
Confidence 777776666554221 222211 2
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHH
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
.|+++|+||+|+.+ +....++.++++...+. +++++||+++.|++++|+++.
T Consensus 89 ~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 89 KPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 38999999999865 33455667777777776 799999999999999999985
No 138
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.6e-23 Score=148.39 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=105.9
Q ss_pred EEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc------chhhhc--CCcEE
Q psy15625 16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI------TSAYYR--GAVGA 87 (223)
Q Consensus 16 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~~--~~~~~ 87 (223)
++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||+..+... ...++. +++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999875554445555555555555554 47899999998766543 344453 78888
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++++|..+.+... .+...+.. .+
T Consensus 79 i~v~d~~~~~~~~------------------------------------------------------~~~~~~~~---~~ 101 (158)
T cd01879 79 VNVVDATNLERNL------------------------------------------------------YLTLQLLE---LG 101 (158)
T ss_pred EEEeeCCcchhHH------------------------------------------------------HHHHHHHH---cC
Confidence 8888877643321 11111221 26
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+|+++|+||+|+.+...+.. +...+....+.+++++||+++.|++++++++.+++
T Consensus 102 ~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 102 LPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred CCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 89999999999976443333 34566677789999999999999999999998753
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=2.7e-23 Score=149.84 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
.|+++|.+|+|||||+++|.+..+.....+..+.+.....+... +....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988766544444433333333332 23568899999999888888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.++......... +..+.. .++|++
T Consensus 82 d~~~~~~~~~~~~----------------------------------------------------~~~~~~---~~~p~i 106 (168)
T cd01887 82 AADDGVMPQTIEA----------------------------------------------------IKLAKA---ANVPFI 106 (168)
T ss_pred ECCCCccHHHHHH----------------------------------------------------HHHHHH---cCCCEE
Confidence 9987543222210 111111 368999
Q ss_pred EeecccchhhccCC-ChHHHHHHHH------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAV-PADEAKTFAE------RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~-~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+...... ..+....+.. ..+++++++|++++.|+++++++|.+.
T Consensus 107 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 107 VALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 99999998642110 0111111111 123579999999999999999999875
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=7.5e-23 Score=161.23 Aligned_cols=160 Identities=19% Similarity=0.128 Sum_probs=111.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccchhh---hcCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITSAY---YRGA 84 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~---~~~~ 84 (223)
..|+++|.||||||||++++++........+..+..+....+.+++ ...+.+||+||..+.. .+...+ ++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999998765444444444555555555543 3578999999975322 233333 4468
Q ss_pred cEEEEEEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 85 VGALLVYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 85 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+++++|+|+++. +.++.+..|.+++.....
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~----------------------------------------------- 269 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP----------------------------------------------- 269 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-----------------------------------------------
Confidence 888888888876 456666655554422110
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+... ..+..+.+....+.+++++||++++|+++++++|.+.
T Consensus 270 --~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 270 --ELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred --hhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHH
Confidence 013689999999999865322 2334455555667889999999999999999999764
No 141
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=3.3e-22 Score=150.33 Aligned_cols=161 Identities=42% Similarity=0.624 Sum_probs=125.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|++|||||||++++.+..+...+.++.+..+...........+.+.+|||+|+.+++.++..++.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999998988887777666665655578899999999999999999999999999999
Q ss_pred EeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 91 YDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 91 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
+|.... ...+....|...+ ........|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l---------------------------------------------------~~~~~~~~~ 113 (219)
T COG1100 85 YDSTLRESSDELTEEWLEEL---------------------------------------------------RELAPDDVP 113 (219)
T ss_pred EecccchhhhHHHHHHHHHH---------------------------------------------------HHhCCCCce
Confidence 999994 4455556554444 333334689
Q ss_pred EEEeecccchhhcc------------CCChHHHHHHHHHc---CCeEEEeecC--CCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLR------------AVPADEAKTFAERN---NLSFIETSAL--DSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~~~~~i~~~ 222 (223)
+++++||+|+...+ .............. ...++++|++ ++.++.++|..+.+.
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~ 183 (219)
T COG1100 114 ILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183 (219)
T ss_pred EEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHH
Confidence 99999999997643 22222222222222 3348999999 999999999887653
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=2e-22 Score=160.18 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=104.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--ccccch------hh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--YRAITS------AY 80 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~------~~ 80 (223)
+..++|+++|.+|||||||+|+|++..+.....+..+.++....+.+++. ..+.+|||+|... ...+.. ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 34589999999999999999999998765444455556666666666433 4789999999622 111111 12
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
+..+|++++|+|.+++.+.+.... |...+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~---------------------------------------------------~~~~L 294 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA---------------------------------------------------VEKVL 294 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH---------------------------------------------------HHHHH
Confidence 556666677777666655544432 22233
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
......++|+++|+||+|+.+.. +.... .....+++++||+++.|++++++.|.+.
T Consensus 295 ~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 295 EELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 33322468999999999986421 22221 1223468999999999999999998764
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=155.24 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=95.1
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc-----------cccc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE-----------RYRA 75 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~~ 75 (223)
.....++|+++|.+|||||||++++.+..+.....+. .+.....+... .+.+|||||.. .+..
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 3345689999999999999999999998765444443 34333333332 58999999942 2333
Q ss_pred cchhhhc----CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625 76 ITSAYYR----GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE 151 (223)
Q Consensus 76 ~~~~~~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 151 (223)
....+++ .++++++|+|....... ...|.+. +....
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~--------------------------------------~~~~~ 118 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEI--IERWEGR--------------------------------------GEIPI 118 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCcccccc--ccccccC--------------------------------------CCcHH
Confidence 3333332 23455555554321110 0001000 00000
Q ss_pred hhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---------eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---------SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+ ......+. ..++|+++|+||+|+.+.+ .+...++....+. +++++||++| |++++|++|.+.
T Consensus 119 ~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 119 D-VEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred H-HHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 0 01111122 2378999999999986432 3345555555554 4899999999 999999999864
No 144
>KOG0070|consensus
Probab=99.90 E-value=1.2e-22 Score=142.22 Aligned_cols=158 Identities=22% Similarity=0.343 Sum_probs=124.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.....+|+++|..||||||++.++..+++-.. .|++|.......+ +.+++.+||.+|+..++++|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 45679999999999999999999998887655 6887766655443 478999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.++.+.+......+..+.. .....+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~--------------------------------------------------~~~l~~ 118 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLA--------------------------------------------------EPELRN 118 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHc--------------------------------------------------CcccCC
Confidence 999999999988887644333322 211247
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++.+||.|+++ ..+..++...... ....+..|+|.+|+|+.+.++++.+.
T Consensus 119 ~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~ 176 (181)
T KOG0070|consen 119 APLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNN 176 (181)
T ss_pred ceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHH
Confidence 89999999999986 3444444444332 23458889999999999999999764
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.89 E-value=4.7e-22 Score=140.29 Aligned_cols=155 Identities=46% Similarity=0.774 Sum_probs=118.0
Q ss_pred EEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC
Q psy15625 16 LIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA 94 (223)
Q Consensus 16 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (223)
++|++|+|||||++++.+... .....++. .++.............+.+||+||...+......+++.++++++|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 44444444 5666666666677889999999998888888888999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEee
Q psy15625 95 KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174 (223)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 174 (223)
++.+......|.. .........++|+++++
T Consensus 80 ~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 80 DRESFENVKEWLL--------------------------------------------------LILINKEGENIPIILVG 109 (157)
T ss_pred CHHHHHHHHHHHH--------------------------------------------------HHHHhhccCCCcEEEEE
Confidence 9888777764421 11222233479999999
Q ss_pred cccchhhccCCChHH-HHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 175 NKSDLRHLRAVPADE-AKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 175 nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
||+|+.......... ........+.+++++|++.+.|+++++++|.+
T Consensus 110 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 110 NKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred eccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999987643332222 34445556788999999999999999999864
No 146
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=6.9e-22 Score=152.76 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-c-------chhhhcCC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-I-------TSAYYRGA 84 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~-------~~~~~~~~ 84 (223)
+|+++|.||||||||+|+|++..+...+....++......+...+ ...+.+|||||...... + ...+++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999887544432222222222222222 34689999999654321 1 11234566
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|++++|+|.++..+.. . .++..+..
T Consensus 81 Dvvl~VvD~~~~~~~~--~---------------------------------------------------~i~~~l~~-- 105 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--E---------------------------------------------------FVLTKLQN-- 105 (270)
T ss_pred CEEEEEEECCCCCchH--H---------------------------------------------------HHHHHHHh--
Confidence 6666666665543332 1 22222222
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++++++|.+.
T Consensus 106 -~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 106 -LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred -cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 3689999999999864221 12233344444444 79999999999999999999865
No 147
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.1e-21 Score=158.50 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccchhh---hcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITSAY---YRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~---~~~~~ 85 (223)
.|+|+|.||||||||++++++........+..+..+....+.++. ...+.+||+||..+.. .+...+ ++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999998775444445544554444444431 3578999999964322 222333 45578
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 86 GALLVYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 86 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
++++|+|+++. +.++....|.+++..
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~--------------------------------------------------- 267 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKL--------------------------------------------------- 267 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhh---------------------------------------------------
Confidence 88888888754 445555545444422
Q ss_pred ccC--CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HAD--QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|++||+||+|+.. ..+....+....+.+++++||++++|+++++++|.+.
T Consensus 268 y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 268 YNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred hchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 211 3689999999999843 2345566666667789999999999999999998764
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=3.5e-22 Score=145.03 Aligned_cols=162 Identities=21% Similarity=0.188 Sum_probs=103.6
Q ss_pred EEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc----ccccc---hhhhcCCcEEE
Q psy15625 16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER----YRAIT---SAYYRGAVGAL 88 (223)
Q Consensus 16 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~---~~~~~~~~~~i 88 (223)
++|++|||||||+++|.+........+..+.+.......++. ...+.+||+||..+ ...+. ...++++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999865222222222333333333331 45789999999632 12222 23467899999
Q ss_pred EEEeCCCc------ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 89 LVYDIAKH------LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 89 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
+|+|..+. .++.....|...+...... .+.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~- 115 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLE-------------------------------------------TIL- 115 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhh-------------------------------------------hHH-
Confidence 99999887 4566666555544221100 000
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
....++|+++|+||+|+..................+.+++++||+++.|++++++++.+.
T Consensus 116 ~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 116 GLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 001268999999999996533322222233344456789999999999999999998764
No 149
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1.7e-21 Score=154.69 Aligned_cols=154 Identities=23% Similarity=0.339 Sum_probs=98.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-cccch-------h
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERY-RAITS-------A 79 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~-------~ 79 (223)
.+..+|+++|.+|||||||+|+|.+..+..... +..+.+.....+..+ ...+.+|||||..+. ..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999988754322 111222222333333 346899999997532 22222 1
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
.++++|++++|+|..+ ++..... .++..
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~--------------------------------------------------~il~~ 155 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITH--------------------------------------------------NILDK 155 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHH--------------------------------------------------HHHHH
Confidence 2557777777777544 2222211 22222
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.. .+.|.++|+||+|+.+. ...+..+++...+ ..++++||++|.|++++|++|.+.
T Consensus 156 l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~ 214 (339)
T PRK15494 156 LRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSK 214 (339)
T ss_pred HHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHh
Confidence 222 24567789999998642 2445555555443 579999999999999999999864
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=3.8e-22 Score=147.24 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=101.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh--Ccccccc------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR--NEFNLES------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT 77 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 77 (223)
.+|+++|.+|+|||||+++|+. ..+...+ ..+.+.+.......+.+....+.+|||||+.++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 3433322 1234445555555566667889999999999999888
Q ss_pred hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
..+++++|++++|+|.++... .....+ +
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~~~~---------------------------------------------------~ 110 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQTRFV---------------------------------------------------L 110 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHHHHH---------------------------------------------------H
Confidence 999999999999999987431 111111 1
Q ss_pred HHhhhccCCCceEEEeecccchhhccC-CChHHHHHHHH-------HcCCeEEEeecCCCCCHH
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRHLRA-VPADEAKTFAE-------RNNLSFIETSALDSTNVE 213 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~ 213 (223)
..... .++|+++|+||+|+.+.+. ...++...+.. +.+++++++||++|.|+.
T Consensus 111 ~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 111 KKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred HHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 11111 3689999999999864221 11233444432 236789999999997663
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=2.1e-21 Score=138.18 Aligned_cols=145 Identities=24% Similarity=0.265 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc--------chhhhc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI--------TSAYYR 82 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~ 82 (223)
++|+++|++|+|||||++++++..... ...+..+..+....... ....+.+|||||..++... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 22233333333333333 3457899999996554321 112344
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|+|.+++.+..... .+..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~---------------------------------------------------~~~~---- 104 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLE---------------------------------------------------ILEL---- 104 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHH---------------------------------------------------HHHh----
Confidence 555666666655544433332 2221
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.... .....+.+++++||+++.|+++++++|.+.
T Consensus 105 --~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 105 --PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred --hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 236899999999998753322 334456789999999999999999998764
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=1.5e-21 Score=143.28 Aligned_cols=155 Identities=22% Similarity=0.252 Sum_probs=105.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccc--------------eeeeEEEEEEEcCeEEEEEEEeCCCCccccccch
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--------------GVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS 78 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 78 (223)
+|+++|.+|+|||||+++|.+........... +.+.......+......+.+||+||+..+.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999887665432211 1222222222333456889999999888877788
Q ss_pred hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625 79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR 158 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (223)
.+++.+|++++|+|........... ++.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~----------------------------------------------------~~~ 108 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE----------------------------------------------------HLR 108 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH----------------------------------------------------HHH
Confidence 8888999999999987655332221 111
Q ss_pred HhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH--------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER--------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.. .+.|+++++||+|+...... ..++.++.... ...+++++||+++.|++++++++.+.
T Consensus 109 ~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 109 IARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred HHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 1221 37899999999998652211 12233333332 35679999999999999999999875
No 153
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=2.9e-21 Score=137.69 Aligned_cols=137 Identities=14% Similarity=0.174 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----hhhhcCCcEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT----SAYYRGAVGAL 88 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~~~~~~~~i 88 (223)
+|+++|.+|+|||||+|+|.+.... ...+ ....+... .+||+||.......+ ...++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998875421 1111 11222222 269999963222111 12256677777
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++..++. . .|+..+ ..+.
T Consensus 70 ~v~d~~~~~s~~--~---------------------------------------------------~~~~~~----~~~~ 92 (158)
T PRK15467 70 YVHGANDPESRL--P---------------------------------------------------AGLLDI----GVSK 92 (158)
T ss_pred EEEeCCCccccc--C---------------------------------------------------HHHHhc----cCCC
Confidence 777766554431 1 122222 1257
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCC--eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL--SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++++||+|+.+ ...++..+++.+.++ +++++||++++|++++|+.+.++
T Consensus 93 ~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 93 RQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred CeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 8999999999864 345667777777775 89999999999999999999875
No 154
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5.2e-21 Score=156.40 Aligned_cols=168 Identities=17% Similarity=0.073 Sum_probs=107.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----c---chhhhcCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----I---TSAYYRGA 84 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~---~~~~~~~~ 84 (223)
..|+|+|.||||||||+++|++........+..+..+....+.+.+ ..+.+||+||..+... + ....++.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4799999999999999999998765544445545555555554443 5789999999643211 1 12245678
Q ss_pred cEEEEEEeCCCc----ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 85 VGALLVYDIAKH----LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 85 ~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
+++++|+|+++. +.+..+..+.+++..+..... .. ..+
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~-------------------------------------~~-~~~ 279 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALD-------------------------------------GD-LGL 279 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhccc-------------------------------------cc-chh
Confidence 888888888753 234444444444432211000 00 000
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. ...++|++||+||+|+.+.+.. .+.........+++++++||+++.|+++++++|.+.
T Consensus 280 ~--~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~el 338 (500)
T PRK12296 280 G--DLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAEL 338 (500)
T ss_pred h--hhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 0 1126899999999999753322 222333334557899999999999999999998764
No 155
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=4.5e-21 Score=155.78 Aligned_cols=154 Identities=25% Similarity=0.219 Sum_probs=100.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--cccchh------hhcC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--RAITSA------YYRG 83 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~------~~~~ 83 (223)
.+|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+.. .+.+|||+|.... ..+... .++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999987665455555666666566565432 6789999996321 111221 2455
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|.+++.+...+. .|...+...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~---------------------------------------------------~v~~iL~el 305 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIE---------------------------------------------------AVNTVLEEI 305 (426)
T ss_pred CCEEEEEEeCCCccHHHHHH---------------------------------------------------HHHHHHHHh
Confidence 66666666666655444443 222222322
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+... .... ....+.+ ++++||++|.|+++++++|.+.
T Consensus 306 ~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 306 DAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred ccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 224689999999999864211 1111 1123444 5889999999999999998763
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=4.8e-21 Score=156.44 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=101.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SA 79 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~ 79 (223)
...++|+++|.+|||||||+|+|++..... ...+..+.++....+.+++ ..+.+|||||..++.... ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 356899999999999999999999875422 2234444455555555544 567999999976544322 23
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
+++.+|++++|+|.+++.+.+.. | +..
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~---------------------------------------------------l~~ 305 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--L---------------------------------------------------IID 305 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--H---------------------------------------------------HHH
Confidence 56667777777777665554332 2 222
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+. ..++|+++|+||+|+.+. +...+....+.+++++||++ .|++++|+.+.+.
T Consensus 306 ~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 306 LN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred Hh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHH
Confidence 22 136799999999998642 22344556678899999998 6899988887653
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2.2e-21 Score=138.15 Aligned_cols=146 Identities=23% Similarity=0.170 Sum_probs=92.4
Q ss_pred EEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc--------cchhhhcCCc
Q psy15625 15 VLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA--------ITSAYYRGAV 85 (223)
Q Consensus 15 ~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~ 85 (223)
+++|.+|+|||||+++|.+..... ...+..+.+........ ....+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875321 12222222232333323 335789999999876543 2223456677
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|..+..+..... ....+..
T Consensus 79 ~ii~v~d~~~~~~~~~~~----------------------------------------------------~~~~~~~--- 103 (157)
T cd01894 79 VILFVVDGREGLTPADEE----------------------------------------------------IAKYLRK--- 103 (157)
T ss_pred EEEEEEeccccCCccHHH----------------------------------------------------HHHHHHh---
Confidence 777777665433222111 1111111
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+... . .......+. +++++|++++.|++++|+++++.
T Consensus 104 ~~~piiiv~nK~D~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 104 SKKPVILVVNKVDNIKEED----E-AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred cCCCEEEEEECcccCChHH----H-HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 2589999999999865221 1 233344555 78999999999999999999864
No 158
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=5e-21 Score=130.25 Aligned_cols=94 Identities=32% Similarity=0.549 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccc--ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
||+|+|.+|||||||+++|.+.... .......+.++.............+.+||++|+..+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22223334455445566677776799999999998888888889999999999
Q ss_pred EeCCCcccHHHHHHHH
Q psy15625 91 YDIAKHLTYENVERWL 106 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~ 106 (223)
||++++.++..+..++
T Consensus 81 ~D~s~~~s~~~~~~~~ 96 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLL 96 (119)
T ss_dssp EECCGHHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHHH
Confidence 9999999988886543
No 159
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=8.4e-21 Score=159.41 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=109.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
..+|+++|++++|||||+++|.+..+.....+.++.+.....+..++. ..+.+|||||+..|..++...+..+|++++|
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 478999999999999999999998776655444444444444444332 2789999999999998888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
+|..+....+.... +......++|+
T Consensus 166 Vda~dgv~~qT~e~-------------------------------------------------------i~~~~~~~vPi 190 (587)
T TIGR00487 166 VAADDGVMPQTIEA-------------------------------------------------------ISHAKAANVPI 190 (587)
T ss_pred EECCCCCCHhHHHH-------------------------------------------------------HHHHHHcCCCE
Confidence 99876443222221 11111236899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcC---------CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNN---------LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++++||+|+.+ ...++........+ .+++++||++|.|++++|+++..
T Consensus 191 IVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 191 IVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 99999999864 22333433333322 46999999999999999998854
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=4.6e-21 Score=157.35 Aligned_cols=145 Identities=26% Similarity=0.251 Sum_probs=99.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hhhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SAYY 81 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~ 81 (223)
.++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||..++.... ..++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987643 22334444455455555544 578999999976543321 1245
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+.+|++++|+|.+++.+.+... .|..
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~---------------------------------------------------~l~~--- 318 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE---------------------------------------------------ILEE--- 318 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH---------------------------------------------------HHHh---
Confidence 6666677677666655443322 2221
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+..... ...+.+++++||+++.|+++++++|.+.
T Consensus 319 ---~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 319 ---LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred ---cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 2368999999999996532211 3345679999999999999999998763
No 161
>KOG0071|consensus
Probab=99.87 E-value=9.6e-21 Score=126.11 Aligned_cols=157 Identities=24% Similarity=0.438 Sum_probs=121.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.++|+++|..++||||++.+|+-+.. ....|+.|....+ +.++.+.|++||.+|+...+++|+.|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvet----VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEE----EEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 3578999999999999999999987653 3444666665544 3447789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|..+.+..+.... ++ ...+........
T Consensus 90 FV~Dsa~~dr~eeAr~---EL-----------------------------------------------h~ii~~~em~~~ 119 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARN---EL-----------------------------------------------HRIINDREMRDA 119 (180)
T ss_pred EEEeccchhhHHHHHH---HH-----------------------------------------------HHHhCCHhhhcc
Confidence 9999998866666542 22 222333333478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|++|.+||.|++. ..+.+++.....- ..+-+.++|+.++.++.+-|.|+.+.
T Consensus 120 ~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 120 IILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNN 176 (180)
T ss_pred eEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhh
Confidence 9999999999986 3455666555432 23458899999999999999999865
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=4.5e-21 Score=141.26 Aligned_cols=156 Identities=18% Similarity=0.137 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC----cc---cccccccceeeeEEEEEEEc------------CeEEEEEEEeCCCCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN----EF---NLESKSTIGVEFATRSIQVD------------QKTIKAQIWDTAGQER 72 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~G~~~ 72 (223)
++|+++|++|+|||||+++|+.. .+ .....+..+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 11 11111222233322223232 3367899999999754
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
+..........+|++++|+|..+........
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~------------------------------------------------- 111 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE------------------------------------------------- 111 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-------------------------------------------------
Confidence 3222222344567777777776543322221
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHH-------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAE-------RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+. .... .+.|+++++||+|+..... ...++...... ..+++++++||+++.|++++++++.+.
T Consensus 112 --~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 112 --CLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred --HHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 111 0111 2569999999999863211 11222222111 135789999999999999999998753
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.5e-21 Score=160.40 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=97.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----------ccc-
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----------AIT- 77 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~- 77 (223)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++. .+.+|||||..... .+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988653 233344444444455555554 56899999953211 111
Q ss_pred hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
..+++.+|++++|+|.++..+...+. ++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~----------------------------------------------------~~ 315 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR----------------------------------------------------VL 315 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH----------------------------------------------------HH
Confidence 11345555555555555544443332 22
Q ss_pred HHhhhccCCCceEEEeecccchhhccCC--ChHHHHH-HHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKT-FAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..+.. .++|+++|+||+|+.+.... ...+... +.....++++++||++|.|++++|+.+.+.
T Consensus 316 ~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 316 SMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred HHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 22222 37899999999999642110 1111211 122234689999999999999999998764
No 164
>KOG0096|consensus
Probab=99.86 E-value=1.5e-21 Score=136.48 Aligned_cols=166 Identities=33% Similarity=0.592 Sum_probs=140.6
Q ss_pred CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
|.+++.. -+.++++++|.-|.||||+.++....++...+.++.+....+..+.-+...+++..|||.|++.+..+...+
T Consensus 1 M~~p~~~-~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgy 79 (216)
T KOG0096|consen 1 MTSPPQQ-GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGY 79 (216)
T ss_pred CCCCccc-cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccccc
Confidence 3343333 578999999999999999999999999999999999999888877666667899999999999999999999
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
+-+..+.++.||+...-+..++..|.+++.+.+.
T Consensus 80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~---------------------------------------------- 113 (216)
T KOG0096|consen 80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE---------------------------------------------- 113 (216)
T ss_pred EEecceeEEEeeeeehhhhhcchHHHHHHHHHhc----------------------------------------------
Confidence 9999999999999999999999988777755333
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++|+++++||.|....+ .......+....++.++++||+++.|.+.-|-++.+
T Consensus 114 ------NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 114 ------NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred ------CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhh
Confidence 68999999999987632 223344555667889999999999999999988875
No 165
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=5.1e-20 Score=139.08 Aligned_cols=194 Identities=22% Similarity=0.187 Sum_probs=111.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-------ccchhhhcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-------AITSAYYRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~ 85 (223)
+|+++|.+|+|||||+++|++........+..+.+.....+.++ ...+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999876544433444444545554444 3578999999975432 12235689999
Q ss_pred EEEEEEeCCCccc-HHHHHHHHHHHHHh---cCCceeEEEeCCC---------------ccccccc---cccceeEEEee
Q psy15625 86 GALLVYDIAKHLT-YENVERWLRELRDH---ADQNIVIMLVGPP---------------SLLRRYY---RGAVGALLVYD 143 (223)
Q Consensus 86 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~~~~d 143 (223)
++++|+|.++... ...+...++...-. ....+.+.-.... ......+ +-..+.+ -
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v---~ 156 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV---L 156 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE---E
Confidence 9999999987553 33332222221111 1111111110000 0011111 1111111 1
Q ss_pred cccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.....+.+++...+ .. ....+|+++|+||+|+. ..++...++.. ..++++||+++.|++++|+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~---~~-~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 157 IREDITVDDLIDVI---EG-NRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred EccCCCHHHHHHHH---hC-CceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHH
Confidence 12223333333222 11 12368999999999984 33444455443 358999999999999999998763
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.86 E-value=1.2e-20 Score=159.19 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=111.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc-------cccccc------ccceeeeEEEEEEE-----cCeEEEEEEEeCCCCcc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE-------FNLESK------STIGVEFATRSIQV-----DQKTIKAQIWDTAGQER 72 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~ 72 (223)
..+|+++|+.++|||||+++|+... +...+. ...+.++......+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998742 111111 12244444433333 45568999999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
+......+++.+|++++|+|.++..+.+....|..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~--------------------------------------------- 117 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL--------------------------------------------- 117 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH---------------------------------------------
Confidence 98888889999999999999988776665543211
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|+++|+||+|+.+.. ..+...++....+. .++++||++|.|++++|++|.+.
T Consensus 118 ------~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 118 ------ALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred ------HHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 111 267999999999986421 12223445555555 48999999999999999999764
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=4.2e-21 Score=159.00 Aligned_cols=151 Identities=25% Similarity=0.243 Sum_probs=95.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--------ccccchhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--------YRAITSAY 80 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~ 80 (223)
...+|+|+|.+|||||||+|+|++..... ...+..+.+........+ ...+.+|||||... +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN--GRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC--CcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34789999999999999999999876532 222333333333333333 34689999999652 11223345
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++.+|++++|+|.++..+... . .+...+
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~---------------------------------------------------~i~~~l 142 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-E---------------------------------------------------AVARVL 142 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-H---------------------------------------------------HHHHHH
Confidence 667777777777766544321 1 112222
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.. .++|+++|+||+|+.... .+..+.+ ..++ ..+++||++|.|++++|++|++.
T Consensus 143 ~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 143 RR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 21 368999999999986421 1121222 2333 35799999999999999998864
No 168
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=9.3e-21 Score=152.27 Aligned_cols=157 Identities=20% Similarity=0.124 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----cc---hhhhcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----IT---SAYYRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~---~~~~~~~~ 85 (223)
.|+|+|.||||||||+|+|++.+......+..+.......+.... ...+.++|+||..+... +. ...++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999998875444445544445454554432 23689999999654221 11 12366777
Q ss_pred EEEEEEeCC---CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 86 GALLVYDIA---KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 86 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
++++|+|++ +.+..+....|.+++ ..
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL---------------------------------------------------~~ 268 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINEL---------------------------------------------------EK 268 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHH---------------------------------------------------Hh
Confidence 777777776 333444444444433 22
Q ss_pred ccC--CCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HAD--QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|+++|+||+|+.+...+ .+..+.+....+ .+++++||+++.|++++++.|.+.
T Consensus 269 ~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~ 331 (390)
T PRK12298 269 YSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF 331 (390)
T ss_pred hhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 211 25799999999998643222 233444444444 368999999999999999998764
No 169
>KOG3883|consensus
Probab=99.86 E-value=2.7e-20 Score=125.82 Aligned_cols=161 Identities=24% Similarity=0.377 Sum_probs=130.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccc--ccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccc-cccchhhhcCCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERY-RAITSAYYRGAV 85 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~ 85 (223)
+.-||+++|..++|||.++..+........ +.++++..| ...+.. .+.+..+.++||.|...+ ..+.+.|++-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 457999999999999999999987665444 336665333 444433 466778999999996655 778889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++||+..++++|+.+.....++..+.+ .
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~Kd--------------------------------------------------K 116 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKD--------------------------------------------------K 116 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccc--------------------------------------------------c
Confidence 99999999999999999754443333222 2
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..+|+++++||+|+.+++++..+....|+.+..++.+++++.....+-+.|.+++.
T Consensus 117 KEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 117 KEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred ccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHH
Confidence 36899999999999998999999999999999999999999999999999988764
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.4e-20 Score=136.09 Aligned_cols=155 Identities=23% Similarity=0.241 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc-----------ch
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI-----------TS 78 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~~ 78 (223)
+++|+++|.+|+|||||++++++....... .+..+.......+..++ ..+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 578999999999999999999987643222 22222223223333333 35789999996543110 01
Q ss_pred hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625 79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR 158 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (223)
..++.+|++++|+|..++.+..... +..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~----------------------------------------------------~~~ 107 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR----------------------------------------------------IAG 107 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH----------------------------------------------------HHH
Confidence 1344556666666655544432221 111
Q ss_pred HhhhccCCCceEEEeecccchhhccCCChHHHHH-HHHHc----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT-FAERN----NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+. ..+.|+++++||+|+.+.+....++... +.... +.+++++||+++.|++++++.+.++
T Consensus 108 ~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 108 LIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 111 1368999999999987532222222222 22222 3679999999999999999998764
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.1e-20 Score=155.44 Aligned_cols=156 Identities=23% Similarity=0.220 Sum_probs=96.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----------
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT---------- 77 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---------- 77 (223)
...++|+++|.+|+|||||+++|++....... .+..+.+.....+..++ ..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999987643222 23333333333333433 378999999975544322
Q ss_pred -hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625 78 -SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW 156 (223)
Q Consensus 78 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (223)
..+++.+|++++|+|.++..+..... +
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~----------------------------------------------------~ 275 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR----------------------------------------------------I 275 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH----------------------------------------------------H
Confidence 12355566666666665544433221 1
Q ss_pred HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-HH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-ER----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+..+.. .++|+++|+||+|+.. .....++..... .. .+++++++||++|.|++++|+++.+.
T Consensus 276 ~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 276 AGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred HHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 222221 3689999999999862 111112222221 11 24789999999999999999998764
No 172
>KOG0075|consensus
Probab=99.86 E-value=4.3e-21 Score=128.76 Aligned_cols=153 Identities=24% Similarity=0.417 Sum_probs=122.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
...+.++|..++|||||+|.+..+.+.+...|+.|.+... +....+.+.+||.+|+..++.+|..|.+++++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 5678999999999999999999988888888888866544 556778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
+|..+++........+..+ +....-.++|+
T Consensus 96 VDaad~~k~~~sr~EL~~L--------------------------------------------------L~k~~l~gip~ 125 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDL--------------------------------------------------LDKPSLTGIPL 125 (186)
T ss_pred eecCCcccchhhHHHHHHH--------------------------------------------------hcchhhcCCcE
Confidence 9999988776665333322 23333358999
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcC--------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNN--------LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|++||.|+++ ..+.. .+..+.| +..+.+|++...|++.+.+||++-
T Consensus 126 LVLGnK~d~~~--AL~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 126 LVLGNKIDLPG--ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred EEecccccCcc--cccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 99999999875 22222 2333334 358999999999999999999863
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=1.2e-20 Score=139.47 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=96.7
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----------c
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----------R 74 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~ 74 (223)
+...+..++|+++|.+|+|||||++++++..+.....++.+.+........ ...+.+|||||.... .
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 344556789999999999999999999987644444455444433332222 257899999995321 1
Q ss_pred ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625 75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154 (223)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (223)
.+...+++.++ .++++++++|.+.+.+....
T Consensus 95 ~~~~~~~~~~~------------------------------------------------~~~~~~~v~d~~~~~~~~~~- 125 (196)
T PRK00454 95 KLIEEYLRTRE------------------------------------------------NLKGVVLLIDSRHPLKELDL- 125 (196)
T ss_pred HHHHHHHHhCc------------------------------------------------cceEEEEEEecCCCCCHHHH-
Confidence 11122222221 12334444444433222210
Q ss_pred HHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.....+. ..++|+++++||+|+.+..+. ..+++.........+++++||++++|++++++.|.++
T Consensus 126 ~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 126 QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 1111111 136899999999998542211 1122333433346789999999999999999998765
No 174
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=2.8e-20 Score=156.94 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=102.9
Q ss_pred cCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc------chhhh--cCCcEEEE
Q psy15625 18 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI------TSAYY--RGAVGALL 89 (223)
Q Consensus 18 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~~i~ 89 (223)
|.+|||||||+|++++......+.+..+.+.....+..++ ..+.+||+||+.++... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999877555556655555555555544 46799999998766543 12222 35677777
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.++.+... .+...+. ..++|
T Consensus 79 VvDat~ler~l------------------------------------------------------~l~~ql~---~~~~P 101 (591)
T TIGR00437 79 VVDASNLERNL------------------------------------------------------YLTLQLL---ELGIP 101 (591)
T ss_pred EecCCcchhhH------------------------------------------------------HHHHHHH---hcCCC
Confidence 77766532210 1111111 23689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+. .+.+.+.++.|++++++||++++|++++++.+.+.
T Consensus 102 iIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 102 MILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999997654443 45678888889999999999999999999999764
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=6.2e-20 Score=131.72 Aligned_cols=156 Identities=20% Similarity=0.169 Sum_probs=96.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hhhhc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SAYYR 82 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~~ 82 (223)
..+|+++|.+|+|||||++++.+............... ............+.+||+||........ ...+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433322222211 1112233345678999999965433221 12355
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++++|..++.+ ... ..+...+..
T Consensus 82 ~~d~i~~v~d~~~~~~---------------------------------------------------~~~-~~~~~~~~~ 109 (168)
T cd04163 82 DVDLVLFVVDASEPIG---------------------------------------------------EGD-EFILELLKK 109 (168)
T ss_pred hCCEEEEEEECCCccC---------------------------------------------------chH-HHHHHHHHH
Confidence 5566666666655411 110 011122221
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++++||+|+........+....+.... ..+++++|++++.+++++++.|.+.
T Consensus 110 ---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 110 ---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 25799999999998742222233333443334 3679999999999999999999874
No 176
>KOG1673|consensus
Probab=99.85 E-value=1.2e-20 Score=127.75 Aligned_cols=160 Identities=29% Similarity=0.537 Sum_probs=136.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.-++||.++|.+..|||||+-++.++...+.+..+.|.++..+++.+.+..+.+.+||.+|+.++.++......++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34799999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+.||+++++++.++..|+++.+.... .-+
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~Nk---------------------------------------------------tAi 126 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNK---------------------------------------------------TAI 126 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCC---------------------------------------------------ccc
Confidence 99999999999999988887744211 235
Q ss_pred eEEEeecccchh-----hccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625 169 VIMLVGNKSDLR-----HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 169 p~ivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
|+ +|++|.|.- +.++....+.+..++..+++.++||+...-|+.++|..+.
T Consensus 127 Pi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 127 PI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred eE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHH
Confidence 65 579999963 2333344567777788899999999999999999997653
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=1e-20 Score=137.88 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=93.4
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc---------
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR--------- 74 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------- 74 (223)
.+.+.+...+|+++|.+|+|||||++++++..+.....++.+.+.....+..+. .+.+||+||.....
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence 345567788999999999999999999998864333334444444443333332 68999999953211
Q ss_pred -ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625 75 -AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV 153 (223)
Q Consensus 75 -~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 153 (223)
.+...+++.+ ..++++++++|++.+.+....
T Consensus 88 ~~~~~~~l~~~------------------------------------------------~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 88 QKLIEEYLEKR------------------------------------------------ENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHHHHHHhC------------------------------------------------hhhcEEEEEecCCCCCCHHHH
Confidence 0111111110 124555666665554443332
Q ss_pred HHHHHHhhhccCCCceEEEeecccchhhcc--CCChHHHHHHHHHcC--CeEEEeecCCCCCHH
Q psy15625 154 ERWLRELRDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERNN--LSFIETSALDSTNVE 213 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 213 (223)
..+..+.. .++|+++++||+|+.+.. ....++++......+ .+++++||++++|++
T Consensus 120 -~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 120 -EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 11222322 368999999999985421 122344555555543 479999999999974
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=6.5e-20 Score=158.21 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=105.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.++|+++|.||||||||+|++++........ .+.+...+...+......+.+||+||..++.....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~------------ 68 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS------------ 68 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccc------------
Confidence 4789999999999999999999887644444 44555555555566667899999999765442111
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
..+.++.. ..+.+ ....+|+++.++|+++..... .+...+.+ .++|+
T Consensus 69 -----~~s~~E~i-~~~~l---------------------~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPv 115 (772)
T PRK09554 69 -----QTSLDEQI-ACHYI---------------------LSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPC 115 (772)
T ss_pred -----cccHHHHH-HHHHH---------------------hccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCE
Confidence 00000000 00000 001344444444444322111 12222222 37899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++++||+|+.+.+.+ ..+.+++.++.|++++++||++++|++++++.+.+.
T Consensus 116 IvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 116 IVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 999999998764444 456778888899999999999999999999988653
No 179
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=6e-20 Score=143.78 Aligned_cols=157 Identities=22% Similarity=0.229 Sum_probs=96.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc--------chhhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI--------TSAYY 81 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 81 (223)
..-.|+++|.||||||||+|+|++...........++......+ .......+.+|||||....... ....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i-~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGI-VTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEE-EEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999999988755443332222222222 2223368999999996543211 11234
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
..+|++++++|.++.. +... ...+..+.
T Consensus 83 ~~~D~il~vvd~~~~~---------------------------------------------------~~~~-~~i~~~l~ 110 (292)
T PRK00089 83 KDVDLVLFVVDADEKI---------------------------------------------------GPGD-EFILEKLK 110 (292)
T ss_pred hcCCEEEEEEeCCCCC---------------------------------------------------ChhH-HHHHHHHh
Confidence 4555555555555421 1111 11112222
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..+.|+++|+||+|+........+....+....+ .+++++||+++.|++++++++.+.
T Consensus 111 ---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~ 169 (292)
T PRK00089 111 ---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKY 169 (292)
T ss_pred ---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 2368999999999986322222334444444333 579999999999999999998764
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=3e-20 Score=158.39 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=109.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeee--EEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
...+|+++|..++|||||+++|....+.....+.++.+. ....+..++....+.+|||||+..|..++..+++.+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 457899999999999999999998776544333333222 222233334557899999999999999998899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|..+....+....+ ..+ ...+
T Consensus 323 ILVVDA~dGv~~QT~E~I----------------------------------------------------~~~---k~~~ 347 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAI----------------------------------------------------NYI---QAAN 347 (742)
T ss_pred EEEEECcCCCChhhHHHH----------------------------------------------------HHH---HhcC
Confidence 999998775433222211 111 1236
Q ss_pred ceEEEeecccchhhccCCChHHHHHHH-------HHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFA-------ERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++++||+|+.+. ..+++.+.. ..++ ++++++||++|.|+++++++|...
T Consensus 348 iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 348 VPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 899999999998652 222222222 2223 689999999999999999998753
No 181
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=4.4e-20 Score=155.67 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=108.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc---ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
+.|+++|.+++|||||+++|++.. ++....+.++.+.....+..++ ..+.+||+||+..+.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999743 3334445555555555555544 68899999999888777777888999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++....+..+ . +..+.. .++
T Consensus 79 LVVDa~~G~~~qT~e----h------------------------------------------------l~il~~---lgi 103 (581)
T TIGR00475 79 LVVDADEGVMTQTGE----H------------------------------------------------LAVLDL---LGI 103 (581)
T ss_pred EEEECCCCCcHHHHH----H------------------------------------------------HHHHHH---cCC
Confidence 999998743211111 0 011111 256
Q ss_pred e-EEEeecccchhhccCC--ChHHHHHHHHHc----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 V-IMLVGNKSDLRHLRAV--PADEAKTFAERN----NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
| +++|+||+|+.+...+ ..++.+.+.... +++++++||++|.|++++++.+.+.
T Consensus 104 ~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 104 PHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 6 9999999998653322 233455555543 5789999999999999999988653
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.2e-19 Score=155.90 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=107.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
....|+++|..++|||||+++|.+..+.......++.+.....+..+ ...+.+|||||+..|..++...++.+|++++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35789999999999999999999877765444443333333333333 3578999999999999988888899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|..+....+.... +......++|
T Consensus 367 VVdAddGv~~qT~e~-------------------------------------------------------i~~a~~~~vP 391 (787)
T PRK05306 367 VVAADDGVMPQTIEA-------------------------------------------------------INHAKAAGVP 391 (787)
T ss_pred EEECCCCCCHhHHHH-------------------------------------------------------HHHHHhcCCc
Confidence 999877533222221 1111123689
Q ss_pred EEEeecccchhhccCCChHHHHH-------HHHHcC--CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKT-------FAERNN--LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++|++||+|+.+. ..+.... +...++ ++++++||++|.|++++|++|..
T Consensus 392 iIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 392 IIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 9999999998642 2222221 122233 67999999999999999999863
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.2e-19 Score=149.64 Aligned_cols=148 Identities=24% Similarity=0.205 Sum_probs=94.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchhhhc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSAYYR 82 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~ 82 (223)
.+|+++|.+|||||||+|+|.+..... ...+..+.+........++ ..+.+|||||+... ......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876532 2223333344444444444 68899999997651 111223455
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|+|..+..+..... +..|+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~-------------------------------------------------~~~~l~~--- 107 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE-------------------------------------------------IAKILRK--- 107 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH-------------------------------------------------HHHHHHH---
Confidence 666666666655433221111 1122221
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.++|+++|+||+|+.+. .+...++ ...++. ++++||+++.|++++++.+.+
T Consensus 108 ---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 108 ---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 26899999999996541 1222222 345654 899999999999999999875
No 184
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=7.8e-20 Score=135.65 Aligned_cols=157 Identities=21% Similarity=0.181 Sum_probs=95.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccc---ccccccceeeeEEEEEEEc---------------------------C----
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQVD---------------------------Q---- 57 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~---- 57 (223)
++|+++|+.|+|||||+.++.+.... .......+.......+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999765211 1111111111110000000 0
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV 136 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (223)
....+.+|||||+..+..........+|++++|+|..++. ......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~--------------------------------- 127 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE--------------------------------- 127 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH---------------------------------
Confidence 1157899999998777666666677788999999987631 111111
Q ss_pred eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecCCCCC
Q psy15625 137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSALDSTN 211 (223)
Q Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 211 (223)
.+..+... ...|+++|+||+|+.+.... ..++.+.+... .+++++++||+++.|
T Consensus 128 -------------------~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g 186 (203)
T cd01888 128 -------------------HLAALEIM--GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN 186 (203)
T ss_pred -------------------HHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence 01111111 12478999999998642111 11233333332 256799999999999
Q ss_pred HHHHHHHHHhh
Q psy15625 212 VETAFQNILTA 222 (223)
Q Consensus 212 i~~~~~~i~~~ 222 (223)
++++|++|.+.
T Consensus 187 i~~L~~~l~~~ 197 (203)
T cd01888 187 IDVLLEYIVKK 197 (203)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 185
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=134.97 Aligned_cols=164 Identities=21% Similarity=0.193 Sum_probs=106.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
++--|+++|.||||||||+|++.+.+....+....++......+.. ....++.++||||.+........++-
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~------- 76 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMN------- 76 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHH-------
Confidence 4567999999999999999999999998888766655554444433 34668999999996543322211100
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
. .....+..+|+++++.|+.++....+ +..++.+.. .+.|
T Consensus 77 -------------~-----------------------~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~p 116 (298)
T COG1159 77 -------------K-----------------------AARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTP 116 (298)
T ss_pred -------------H-----------------------HHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCC
Confidence 0 01122345666666666666555544 122333333 3679
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++++||+|...+..........+..... ..++++||+++.|++.+.+.+..
T Consensus 117 vil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 117 VILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKE 169 (298)
T ss_pred eEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHH
Confidence 99999999986543311222222222233 36999999999999999998765
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1.3e-19 Score=149.27 Aligned_cols=148 Identities=24% Similarity=0.208 Sum_probs=91.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchhhhcC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSAYYRG 83 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~ 83 (223)
+|+++|.+|||||||+|+|++...... ..+..+.+........+ ...+.+|||||.... ......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--GREFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC--CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998764322 22333333333333333 346899999996321 1222233445
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|.. .+.+..+. .+...+..
T Consensus 79 ad~vl~vvD~~---------------------------------------------------~~~~~~d~-~i~~~l~~- 105 (429)
T TIGR03594 79 ADVILFVVDGR---------------------------------------------------EGLTPEDE-EIAKWLRK- 105 (429)
T ss_pred CCEEEEEEeCC---------------------------------------------------CCCCHHHH-HHHHHHHH-
Confidence 55555555544 43333221 11111222
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.... ... ..+.++ +++++||+++.|+.++++.+.+.
T Consensus 106 --~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~ 158 (429)
T TIGR03594 106 --SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILEL 158 (429)
T ss_pred --hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence 26899999999998653321 112 335566 69999999999999999998753
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=4.2e-19 Score=126.32 Aligned_cols=151 Identities=20% Similarity=0.174 Sum_probs=96.7
Q ss_pred EEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch-------hhhcCCcEE
Q psy15625 16 LIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS-------AYYRGAVGA 87 (223)
Q Consensus 16 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~~~~~~~ 87 (223)
++|++|+|||||++++.+.... .......+............ ...+.+||+||......... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 22333323333333322221 45889999999776554333 356667777
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++++|..+........ + .... ...+
T Consensus 80 l~v~~~~~~~~~~~~~-~---------------------------------------------------~~~~---~~~~ 104 (163)
T cd00880 80 LFVVDADLRADEEEEK-L---------------------------------------------------LELL---RERG 104 (163)
T ss_pred EEEEeCCCCCCHHHHH-H---------------------------------------------------HHHH---HhcC
Confidence 7777776655543332 1 1111 1237
Q ss_pred ceEEEeecccchhhccCCChH---HHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPAD---EAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+......... .........+.+++++|++++.|++++++++.+.
T Consensus 105 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 105 KPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 899999999998653322111 1122223346789999999999999999999875
No 188
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=6.8e-20 Score=134.50 Aligned_cols=158 Identities=23% Similarity=0.293 Sum_probs=104.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccc------------------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
+.++|+++|+.++|||||+++|........ .....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999986542111 01112222222222212566789999999998
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE 151 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 151 (223)
++.......++.+|++++|+|..+........
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~------------------------------------------------ 113 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE------------------------------------------------ 113 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH------------------------------------------------
T ss_pred ceeecccceecccccceeeeeccccccccccc------------------------------------------------
Confidence 88877777788999999999988664432222
Q ss_pred hhHHHHHHhhhccCCCceEEEeecccchhhccC-CChHHHH-HHHHHc------CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRA-VPADEAK-TFAERN------NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+..+.. .++|+++|+||+|+...+. ...++.. .+.+.. .++++++||++|.|++++++.|.+.
T Consensus 114 ----~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 114 ----HLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp ----HHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----ccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 1112222 3788999999999863111 0111222 332322 2579999999999999999999864
No 189
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=3.5e-19 Score=132.05 Aligned_cols=93 Identities=24% Similarity=0.361 Sum_probs=68.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC-cEEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA-VGALLVY 91 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~~i~v~ 91 (223)
+|+++|++|||||||+++|....+.....+. +...........+....+.+||+||+..+......+++.+ +++++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998775554322 2222222221124456799999999999988888889998 9999999
Q ss_pred eCCCc-ccHHHHHHHH
Q psy15625 92 DIAKH-LTYENVERWL 106 (223)
Q Consensus 92 d~~~~-~~~~~~~~~~ 106 (223)
|..+. .++..+..++
T Consensus 81 D~~~~~~~~~~~~~~l 96 (203)
T cd04105 81 DSATFQKNLKDVAEFL 96 (203)
T ss_pred ECccchhHHHHHHHHH
Confidence 99987 5566555443
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3.4e-19 Score=146.89 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=93.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----------
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT---------- 77 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---------- 77 (223)
...++|+++|.+|+|||||++++++...... ..+. ++.......+......+.+|||||........
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999998754322 2233 33333222232334567899999964433221
Q ss_pred -hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625 78 -SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW 156 (223)
Q Consensus 78 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (223)
..+++.+|++++|+|.+ .+.+..+. ..
T Consensus 249 ~~~~~~~ad~~ilViD~~---------------------------------------------------~~~~~~~~-~i 276 (435)
T PRK00093 249 TLKAIERADVVLLVIDAT---------------------------------------------------EGITEQDL-RI 276 (435)
T ss_pred HHHHHHHCCEEEEEEeCC---------------------------------------------------CCCCHHHH-HH
Confidence 11334445555555544 44333332 11
Q ss_pred HHHhhhccCCCceEEEeecccchhhccCCChHHHH-HHHH----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK-TFAE----RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
...+.. .++|+++++||+|+.+... .++.. .+.. ...++++++||+++.|++++++.+.+
T Consensus 277 ~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 277 AGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred HHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 222222 3689999999999863211 11111 1111 23578999999999999999998875
No 191
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=6.2e-19 Score=148.99 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=108.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc-----cc------cccceeeeEEEEEEE-----cCeEEEEEEEeCCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL-----ES------KSTIGVEFATRSIQV-----DQKTIKAQIWDTAGQ 70 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~ 70 (223)
+...+++++|+.++|||||+.+|+...- .. .. ....+.++......+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3457899999999999999999986321 10 00 012233333333222 445788999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY 150 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 150 (223)
.++...+..+++.+|++++|+|.++..+.+....|
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~--------------------------------------------- 119 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV--------------------------------------------- 119 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH---------------------------------------------
Confidence 99988888899999999999999887655444322
Q ss_pred hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe---EEEeecCCCCCHHHHHHHHHhh
Q psy15625 151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS---FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.... ..++|+++|+||+|+.+.. ......++....++. ++++||++|.|+++++++|.+.
T Consensus 120 ------~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 120 ------YLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred ------HHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence 1111 1268999999999986421 122233444444543 8999999999999999999764
No 192
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=5.4e-19 Score=140.66 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=109.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
.-+|++++|.||||||||+|+|.+.......+ -.|++.+.....++-.++++.+.||+|..+..+..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~V------------ 282 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVV------------ 282 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEECCEEEEEEecCCcccCccHH------------
Confidence 45899999999999999999999988766653 23455555555555566789999999965443322
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
....+++.+..+ +.+|.+++++|++.+.+..+.... . ....++|
T Consensus 283 --------E~iGIeRs~~~i-----------------------~~ADlvL~v~D~~~~~~~~d~~~~----~-~~~~~~~ 326 (454)
T COG0486 283 --------ERIGIERAKKAI-----------------------EEADLVLFVLDASQPLDKEDLALI----E-LLPKKKP 326 (454)
T ss_pred --------HHHHHHHHHHHH-----------------------HhCCEEEEEEeCCCCCchhhHHHH----H-hcccCCC
Confidence 223333333333 347888888888887555442221 1 3345789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|.||+|+....... .+....+.+++.+|+++++|++.+.+.|.+.
T Consensus 327 ~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~ 374 (454)
T COG0486 327 IIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEGLDALREAIKQL 374 (454)
T ss_pred EEEEEechhcccccccc-----hhhccCCCceEEEEecCccCHHHHHHHHHHH
Confidence 99999999997633211 1122334468999999999999999988764
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=4.9e-19 Score=140.55 Aligned_cols=157 Identities=22% Similarity=0.169 Sum_probs=103.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
..|+++|.||||||||+|+|++.......+ ..|.+.+...-........|.++||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~----------------- 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-TPGVTRDRIYGDAEWLGREFILIDTGGLDDGD----------------- 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec-CCCCccCCccceeEEcCceEEEEECCCCCcCC-----------------
Confidence 579999999999999999999988765543 22344444433344444569999999954221
Q ss_pred eCCCcccHHHH--HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 92 DIAKHLTYENV--ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 92 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
.+.+... ++.+. ....+|++++|.|+..+.+..+. .....+. ..++|
T Consensus 66 ----~~~l~~~i~~Qa~~-----------------------Ai~eADvilfvVD~~~Git~~D~-~ia~~Lr---~~~kp 114 (444)
T COG1160 66 ----EDELQELIREQALI-----------------------AIEEADVILFVVDGREGITPADE-EIAKILR---RSKKP 114 (444)
T ss_pred ----chHHHHHHHHHHHH-----------------------HHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH---hcCCC
Confidence 1111111 11111 22458888888888888777662 1111222 23689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|-.. .++...-..++|+ +++.+||..|.|+.++++.+++.
T Consensus 115 viLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 115 VILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred EEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 999999999642 2233333345565 59999999999999999999865
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.1e-18 Score=150.92 Aligned_cols=151 Identities=25% Similarity=0.219 Sum_probs=94.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchhhhc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSAYYR 82 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~ 82 (223)
..+|+++|.+|||||||+|+|++....... ...+.+..............+.+|||||.... ......+++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 468999999999999999999987643222 23344444444334334457899999996531 112223455
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|+|..+.. +..+ ..+...+..
T Consensus 354 ~aD~iL~VvDa~~~~---------------------------------------------------~~~d-~~i~~~Lr~ 381 (712)
T PRK09518 354 LADAVVFVVDGQVGL---------------------------------------------------TSTD-ERIVRMLRR 381 (712)
T ss_pred hCCEEEEEEECCCCC---------------------------------------------------CHHH-HHHHHHHHh
Confidence 666666666654422 1111 022222222
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.... .....+ ...+. ..+++||+++.|+.+++++|++.
T Consensus 382 ---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 382 ---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred ---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 378999999999985421 111222 12333 36799999999999999998864
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=8e-19 Score=147.34 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccc----cceeeeEEEEE------------EEcCeEEEEEEEeCCCCccccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----TIGVEFATRSI------------QVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
.-|+++|.+|+|||||+++|.+..+...... +++..+..... .+......+.+|||||+..+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3599999999999999999998876433222 22222111110 0001112388999999999999
Q ss_pred cchhhhcCCcEEEEEEeCCCcc
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
++..+++.+|++++|+|.++..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~ 106 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGF 106 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCC
Confidence 9888999999999999998743
No 196
>KOG0076|consensus
Probab=99.80 E-value=1.2e-19 Score=125.21 Aligned_cols=156 Identities=22% Similarity=0.372 Sum_probs=116.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccc-------ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-------LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
..+.|+++|..++|||||+.++...... ..-.++.+... .+++++ ...+.+||..|+...+++|..|+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 4578999999999999999998654321 11224444333 333344 457899999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++++|.++++.++......+.+.. .
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~--------------------------------------------------~ 121 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVE--------------------------------------------------N 121 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHH--------------------------------------------------H
Confidence 99999999999999888888754443322 2
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHH------HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE------RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..-++.|+++.+||.|+.+. ...++++.... +...++.+|||.+|+||++...|++.
T Consensus 122 E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 122 EKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred HHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence 22248999999999999863 33444444333 23467999999999999999999875
No 197
>KOG1489|consensus
Probab=99.80 E-value=1.7e-18 Score=130.86 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch-------hhhcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS-------AYYRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~~~~~ 85 (223)
.|+++|.||+|||||++++++.+.....+++.+..+...++.+++.. .+.+-|+||..+-..+.+ ..++.|.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 58999999999999999999998776666776677766666665544 489999999655443332 2366788
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 86 GALLVYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 86 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+++|+|++.. +.++.++....+++-+. .
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye------------------------------------------------k 308 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYE------------------------------------------------K 308 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHh------------------------------------------------h
Confidence 88889998887 66666665544442211 1
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.-...|.+||+||+|+++. ....+.+++.+.+-+ ++++||++++++.++.+.|-+
T Consensus 309 -~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 309 -GLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred -hhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 1136799999999998641 222346777766544 999999999999999988754
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=137.80 Aligned_cols=168 Identities=25% Similarity=0.298 Sum_probs=112.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.||+|||||+|+|+++.....+ +..|++.+.....+......+.++||+|...-..+... +-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~--------~E 247 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES--------VE 247 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccc--------eE
Confidence 4699999999999999999999998876555 44456666666666655567899999996443322221 01
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
.|++.+ +...+ ..++.+++++|++.+-+.++.+ ....+.. .+.+
T Consensus 248 ~~Sv~r--t~~aI------------------------------~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~ 291 (444)
T COG1160 248 KYSVAR--TLKAI------------------------------ERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRG 291 (444)
T ss_pred EEeehh--hHhHH------------------------------hhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCC
Confidence 111111 11111 3478888888888887777732 2222222 3789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++||+||.|+.+......++.+..... ...+++++||+++.++.++|+.+.++
T Consensus 292 ~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 292 IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred eEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 999999999876433444444333332 24689999999999999999998753
No 199
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=2.2e-18 Score=123.91 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----------cccchhhhc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----------RAITSAYYR 82 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~~ 82 (223)
.|+++|.+|+|||||++++.+........++.+.+........+. .+.+||+||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996555444445554544444443433 8899999995432 111111222
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh--hHHHHHHh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN--VERWLREL 160 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~ 160 (223)
.. ...+.+++++|.....+... +..|+..
T Consensus 78 ~~------------------------------------------------~~~~~~~~v~d~~~~~~~~~~~~~~~l~~- 108 (170)
T cd01876 78 NR------------------------------------------------ENLKGVVLLIDSRHGPTEIDLEMLDWLEE- 108 (170)
T ss_pred hC------------------------------------------------hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-
Confidence 11 12333344444433321111 1122222
Q ss_pred hhccCCCceEEEeecccchhhccC--CChHHHHHHHH--HcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAE--RNNLSFIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
.+.|+++++||+|+..... ........... ....+++++|++++.++.+++++|.+.+
T Consensus 109 -----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 109 -----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred -----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 2579999999999843211 11122222222 2345799999999999999999998753
No 200
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=3.6e-18 Score=133.73 Aligned_cols=166 Identities=22% Similarity=0.181 Sum_probs=114.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
......|+++|.+|+|||||+|+|++.........+.+.++.++.+.+.+ +..+.+.||.|....-+-+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~---------- 257 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHP---------- 257 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChH----------
Confidence 34567899999999999999999999988888888888999888888876 3478999999954322111
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
-.+.....+++. ..+|.++.|.|++++...+.+......+.......
T Consensus 258 ----------LV~AFksTLEE~-----------------------~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~ 304 (411)
T COG2262 258 ----------LVEAFKSTLEEV-----------------------KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE 304 (411)
T ss_pred ----------HHHHHHHHHHHh-----------------------hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC
Confidence 111222222222 23555666666666655555555566666665567
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+|+|.||+|+..... .........+ ..+.+||+++.|++.+++.|...
T Consensus 305 ~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~ 354 (411)
T COG2262 305 IPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIEL 354 (411)
T ss_pred CCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHH
Confidence 99999999999754222 1111111112 58999999999999999988763
No 201
>KOG4423|consensus
Probab=99.79 E-value=3.1e-21 Score=134.53 Aligned_cols=167 Identities=34% Similarity=0.648 Sum_probs=137.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
+-.+++.|+|..|+|||+++.++....+...+..+++.++..+..+-+ ...+++.+||+.|+..++.+..-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 446899999999999999999999999988888888887766655544 3456789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||+++..+++.+..|.+++... +....+..
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk-----------------------------------------------~qLpng~P 135 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSK-----------------------------------------------LQLPNGTP 135 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCc-----------------------------------------------ccCCCCCc
Confidence 9999999999999999888877331 12222346
Q ss_pred ceEEEeecccchhhccCC-ChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++..||||....... ...+...+.+++|+. .+++|+|.+.++.|+...+++.
T Consensus 136 v~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 136 VPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred chheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHH
Confidence 899999999998652222 236778888888875 9999999999999998888753
No 202
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=125.55 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=124.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-------ccchhhhcC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-------AITSAYYRG 83 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 83 (223)
--+++++|.|++|||||+++|++.+......++.+.+..+..+.+. +..+++.|+||..+.. .......++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~--ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK--GAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec--CceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 3689999999999999999999998877777777777767666554 4578999999854322 334456899
Q ss_pred CcEEEEEEeCCCccc-HHHHHHHHHHHHH---hcCCceeEE--------EeCCCcc-------ccc---cccccceeEEE
Q psy15625 84 AVGALLVYDIAKHLT-YENVERWLRELRD---HADQNIVIM--------LVGPPSL-------LRR---YYRGAVGALLV 141 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~-------~~~---~~~~~~~~~~~ 141 (223)
||++++|+|...... .+.+.+.++..-- ...+++.+. +.++..+ .+. .++-..+.+++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999997665 4444433332211 112222222 2221111 111 11212222222
Q ss_pred eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
- ..-|.+++. ..+... ...+|.++|.||+|+.. .++...+.+.. ..+.+||+++.|++++.+.|.+
T Consensus 221 r---~dvTlDd~i---d~l~~n-rvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 221 R---EDVTLDDLI---DALEGN-RVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred e---cCCcHHHHH---HHHhhc-ceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHH
Confidence 1 223333332 222222 23689999999999854 45555555555 7799999999999999999876
Q ss_pred h
Q psy15625 222 A 222 (223)
Q Consensus 222 ~ 222 (223)
.
T Consensus 287 ~ 287 (365)
T COG1163 287 V 287 (365)
T ss_pred h
Confidence 4
No 203
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=3.5e-18 Score=147.89 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=95.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-c---------c-
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-I---------T- 77 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~---------~- 77 (223)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++. .+.+|||||..+... . .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 35899999999999999999999987532 22233344444444555544 467999999542111 0 0
Q ss_pred hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
..+++.+|++++|+|.++..+..... ++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~----------------------------------------------------i~ 554 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK----------------------------------------------------VM 554 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH----------------------------------------------------HH
Confidence 11234555555555555544433332 12
Q ss_pred HHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-HH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-ER----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..+.. .++|+++|+||+|+.+... .+...... .. ...+++++||++|.|++++|+.+.++
T Consensus 555 ~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 555 SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 22221 3689999999999864211 12222211 11 13467999999999999999998764
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=1.6e-18 Score=142.27 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=99.5
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----------------------------ccccceeeeEEEEEEEcCe
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDQK 58 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 58 (223)
+++.++|+++|++++|||||+++|+...-... .....+++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 56789999999999999999999984321110 0112344555555556666
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccccee
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGA 138 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (223)
...+.+|||||+.++.......++.+|++++|+|..+.........
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~---------------------------------- 128 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR---------------------------------- 128 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH----------------------------------
Confidence 7789999999987776544455678889999998876211111110
Q ss_pred EEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeecCCC
Q psy15625 139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSALDS 209 (223)
Q Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~ 209 (223)
.++...... ...|+++++||+|+.+... ...+++..+....+ ++++++||++|
T Consensus 129 ----------------~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g 190 (425)
T PRK12317 129 ----------------EHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEG 190 (425)
T ss_pred ----------------HHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccC
Confidence 011111111 1247999999999864111 12235555555554 46999999999
Q ss_pred CCHHH
Q psy15625 210 TNVET 214 (223)
Q Consensus 210 ~~i~~ 214 (223)
.|+++
T Consensus 191 ~gi~~ 195 (425)
T PRK12317 191 DNVVK 195 (425)
T ss_pred CCccc
Confidence 99986
No 205
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.1e-18 Score=140.58 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=109.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
..+|+++|+||||||||+|++++......++|..+.+.....+...++ .+++.|.||.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~-------------------- 60 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGT-------------------- 60 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCc--------------------
Confidence 456999999999999999999999988888888766666666555444 5899999994
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|+.+..+..+.+.+ +.+. ....|+++-+.|++.-+--- ...-+...-+.|+
T Consensus 61 YSL~~~S~DE~Var--~~ll---------------------~~~~D~ivnVvDAtnLeRnL------yltlQLlE~g~p~ 111 (653)
T COG0370 61 YSLTAYSEDEKVAR--DFLL---------------------EGKPDLIVNVVDATNLERNL------YLTLQLLELGIPM 111 (653)
T ss_pred CCCCCCCchHHHHH--HHHh---------------------cCCCCEEEEEcccchHHHHH------HHHHHHHHcCCCe
Confidence 33333222222221 0000 02344455555544432111 1112222237899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++.|++|....+. ..-+.+++.+..|+|++++||+++.|++++...+.+.
T Consensus 112 ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 112 ILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred EEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 99999999887443 4557778888999999999999999999999988764
No 206
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=1.3e-18 Score=142.81 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=102.6
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhC--ccccc---------------------------ccccceeeeEEEEEEEcC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLE---------------------------SKSTIGVEFATRSIQVDQ 57 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 57 (223)
.+++.++|+++|..++|||||+++|+.. ..... .....+.+.......+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 3567899999999999999999999852 11100 001223444455555666
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG 137 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
....+.+||+||+.++.......+..+|++++|+|.++.++.. ...+.+.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~----------------------------- 132 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREH----------------------------- 132 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHH-----------------------------
Confidence 6678999999998877655555678899999999998864321 1111110
Q ss_pred eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeecCC
Q psy15625 138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSALD 208 (223)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~ 208 (223)
+...... ...|+++++||+|+.+... ...+++..++...+ ++++++||++
T Consensus 133 -------------------~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~ 191 (426)
T TIGR00483 133 -------------------AFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWN 191 (426)
T ss_pred -------------------HHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccc
Confidence 1111111 1357999999999864111 11345556666555 5799999999
Q ss_pred CCCHHH
Q psy15625 209 STNVET 214 (223)
Q Consensus 209 ~~~i~~ 214 (223)
+.|+.+
T Consensus 192 g~ni~~ 197 (426)
T TIGR00483 192 GDNVIK 197 (426)
T ss_pred cccccc
Confidence 999986
No 207
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=4.4e-18 Score=124.97 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=98.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc------c--------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL------E--------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
+.++|+++|..++|||||+++|+...... . .....+++.......+......+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 35899999999999999999998641100 0 001234445555555656666889999999876655
Q ss_pred cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
.....+..+|++++|+|.......... .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~----------------------------------------------------~ 108 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTR----------------------------------------------------E 108 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH----------------------------------------------------H
Confidence 555566778888888877654221111 1
Q ss_pred HHHHhhhccCCCce-EEEeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCCCCH----------HHHH
Q psy15625 156 WLRELRDHADQNIV-IMLVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDSTNV----------ETAF 216 (223)
Q Consensus 156 ~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i----------~~~~ 216 (223)
.+..+.. .++| +++++||+|+...... ..+++.++....+ ++++++||++|.|+ ..++
T Consensus 109 ~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~ 185 (195)
T cd01884 109 HLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELL 185 (195)
T ss_pred HHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHH
Confidence 1122222 2555 7889999998531111 1234555554443 67999999999874 4666
Q ss_pred HHHHh
Q psy15625 217 QNILT 221 (223)
Q Consensus 217 ~~i~~ 221 (223)
+.|.+
T Consensus 186 ~~l~~ 190 (195)
T cd01884 186 DALDS 190 (195)
T ss_pred HHHHh
Confidence 66653
No 208
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=118.79 Aligned_cols=173 Identities=19% Similarity=0.213 Sum_probs=114.0
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
++-+++...-|+++|.+|||||||||+|++.+.......++|.+.....+.+++. +.++|.||..- ..
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGy-Ak-------- 84 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGY-AK-------- 84 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCccc-cc--------
Confidence 3445566789999999999999999999998755555566777766666666654 78999999421 10
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
. +-+..+.|-+.+.++-.. ..+..++++++|++++....+. ..+..+.
T Consensus 85 ----------v---~k~~~e~w~~~i~~YL~~----------------R~~L~~vvlliD~r~~~~~~D~-em~~~l~-- 132 (200)
T COG0218 85 ----------V---PKEVKEKWKKLIEEYLEK----------------RANLKGVVLLIDARHPPKDLDR-EMIEFLL-- 132 (200)
T ss_pred ----------C---CHHHHHHHHHHHHHHHhh----------------chhheEEEEEEECCCCCcHHHH-HHHHHHH--
Confidence 0 112333444444333221 1347788999999999888775 2222232
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHH----cCCe--EEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER----NNLS--FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~--~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|++|++||+|.....+.. ......+.. .... ++..|+.++.|++++.+.|.+.
T Consensus 133 -~~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 133 -ELGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred -HcCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHH
Confidence 3489999999999986532221 112222322 2222 7889999999999999888763
No 209
>KOG0074|consensus
Probab=99.78 E-value=3.8e-18 Score=113.96 Aligned_cols=157 Identities=22% Similarity=0.362 Sum_probs=115.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|..|+|||||+..|...... .-.|+.| +.++.+.+++. ..+++||.+|+..-++.|..|+.+.|+++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence 56799999999999999999999876643 3335544 44455545443 58999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++...++.+...+.++ ++...-...
T Consensus 91 yVIDS~D~krfeE~~~el~EL--------------------------------------------------leeeKl~~v 120 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVEL--------------------------------------------------LEEEKLAEV 120 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHH--------------------------------------------------hhhhhhhcc
Confidence 999988888888776444433 233333478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
|++|..||.|+... ...++.-.-+.- .-+.+.+||+.+++|+..-.+|+.+
T Consensus 121 pvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 121 PVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred ceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 99999999998641 222222111111 1345889999999999988888765
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.78 E-value=1.6e-17 Score=139.95 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=111.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC--cccccc------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN--EFNLES------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
...+|+++|..++|||||+++|+.. .+.... ....+.++......+.+....+.+|||||+.++..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4678999999999999999999972 222211 13445666666667777788999999999999998
Q ss_pred cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
.+..+++.+|++++|+|..+....+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~---------------------------------------------------- 111 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF---------------------------------------------------- 111 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH----------------------------------------------------
Confidence 8899999999999999987754322221
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccC-CChHHHHHHHH-------HcCCeEEEeecCCCC----------CHHHHHH
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRA-VPADEAKTFAE-------RNNLSFIETSALDST----------NVETAFQ 217 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~ 217 (223)
++..... .++|.++++||+|+.+.+. ...+++..+.. +..++++++||++|. ++..+++
T Consensus 112 ~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld 188 (607)
T PRK10218 112 VTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQ 188 (607)
T ss_pred HHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHH
Confidence 1111111 3688999999999864221 11233333331 234679999999998 5888998
Q ss_pred HHHhh
Q psy15625 218 NILTA 222 (223)
Q Consensus 218 ~i~~~ 222 (223)
.|+..
T Consensus 189 ~Ii~~ 193 (607)
T PRK10218 189 AIVDH 193 (607)
T ss_pred HHHHh
Confidence 88753
No 211
>KOG1423|consensus
Probab=99.77 E-value=1.5e-17 Score=125.29 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=106.3
Q ss_pred CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY 81 (223)
Q Consensus 2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 81 (223)
+-++.+..+.+.|+++|.||+|||||.|.+.+.++.+......+++....-+ +......+.++||||...-...+....
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHH
Confidence 4455566678999999999999999999999999988887666555444433 555666899999999543222221110
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
... -++ -.+....++|.++++.|+++..+.... ..+..+.
T Consensus 142 ~~s----------------~lq-----------------------~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~ 181 (379)
T KOG1423|consen 142 MMS----------------VLQ-----------------------NPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLE 181 (379)
T ss_pred HHH----------------hhh-----------------------CHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHH
Confidence 000 000 001112346666666666643332221 1222333
Q ss_pred hccCCCceEEEeecccchhhc-------------cCCCh---HHHHHHHHHc---------CC----eEEEeecCCCCCH
Q psy15625 162 DHADQNIVIMLVGNKSDLRHL-------------RAVPA---DEAKTFAERN---------NL----SFIETSALDSTNV 212 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~---~~~~~~~~~~---------~~----~~~~~Sa~~~~~i 212 (223)
.. .++|-++|.||.|.... ..+.. +-..++.... |+ .+|.+||++|+|+
T Consensus 182 ~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 182 EY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI 259 (379)
T ss_pred HH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence 33 26788999999996431 11111 1111111111 22 3899999999999
Q ss_pred HHHHHHHHhh
Q psy15625 213 ETAFQNILTA 222 (223)
Q Consensus 213 ~~~~~~i~~~ 222 (223)
+++.++|..-
T Consensus 260 kdlkqyLmsq 269 (379)
T KOG1423|consen 260 KDLKQYLMSQ 269 (379)
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=1.7e-18 Score=128.99 Aligned_cols=148 Identities=23% Similarity=0.202 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccc-----------------------------cccceeeeEEEEEEEcCeEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------------------KSTIGVEFATRSIQVDQKTIKAQ 63 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (223)
||+++|.+|+|||||+++|+...-.... ....+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999764321110 00122333333344445566889
Q ss_pred EEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEee
Q psy15625 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143 (223)
Q Consensus 64 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 143 (223)
+|||||+.++.......++.+|++++|+|.++........
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~---------------------------------------- 120 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR---------------------------------------- 120 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH----------------------------------------
Confidence 9999998776554555677888888888877643211111
Q ss_pred cccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC---CeEEEeecCCCCCHHH
Q psy15625 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN---LSFIETSALDSTNVET 214 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 214 (223)
....+... ...++++|+||+|+.+... ....+.+.+....+ .+++++||+++.|+.+
T Consensus 121 ------------~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 121 ------------HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred ------------HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 01111111 1245788999999864211 11234455555555 3589999999999864
No 213
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=115.11 Aligned_cols=155 Identities=25% Similarity=0.425 Sum_probs=114.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccc--------ccc--cceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--------SKS--TIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA 79 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 79 (223)
...||+|.|+-++||||++++++....... +.. ..+...+.....+++ ...+.+++||||.++.-++..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHHH
Confidence 467999999999999999999998764211 111 122223333333333 246899999999999999999
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
..+++.++++++|.+++..+ ..... +..
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~i---------------------------------------------------i~f 115 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEEI---------------------------------------------------IDF 115 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHHH---------------------------------------------------HHH
Confidence 99999999999999999887 22211 222
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+.... .+|++|++||.|+.+ ....+++++..... .+++++.+|..+++..+.++.+..
T Consensus 116 ~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 116 LTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred Hhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHh
Confidence 22221 289999999999986 45667777776655 789999999999999998887654
No 214
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=6.8e-18 Score=115.69 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc----cccccchhhhcCCcEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE----RYRAITSAYYRGAVGAL 88 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~~i 88 (223)
||+++|+.|||||||+++|.+.+. .+..+....+ .-.++||||-- .+..-.......+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998764 3323332222 12459999921 11111222234555555
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
++.|.+++.+ .-. ..+... .+.
T Consensus 69 ll~dat~~~~---------------------------------------------------~~p-----P~fa~~--f~~ 90 (143)
T PF10662_consen 69 LLQDATEPRS---------------------------------------------------VFP-----PGFASM--FNK 90 (143)
T ss_pred EEecCCCCCc---------------------------------------------------cCC-----chhhcc--cCC
Confidence 5555554332 111 111111 257
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHH
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~ 220 (223)
|+|=|+||+|+.. .....+..+++.+..|+. +|++|+.+++|++++.++|-
T Consensus 91 pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 91 PVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 9999999999983 134566778888888885 89999999999999999874
No 215
>KOG0072|consensus
Probab=99.76 E-value=9.2e-19 Score=117.22 Aligned_cols=156 Identities=23% Similarity=0.335 Sum_probs=113.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
...+|+++|..|+||||++-++.-.++. ...|+++.+... +..+..++++||..|+...++.|+.|+.+.+++++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 5689999999999999999888766653 334666655443 44477899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.++..........+ ...+.+..-++..
T Consensus 92 VVDssd~dris~a~~el--------------------------------------------------~~mL~E~eLq~a~ 121 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVEL--------------------------------------------------YSMLQEEELQHAK 121 (182)
T ss_pred EEeccchhhhhhhHHHH--------------------------------------------------HHHhccHhhcCce
Confidence 99999977654443211 1122222224577
Q ss_pred EEEeecccchhhccCCChHHH-----HHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEA-----KTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++++||.|..... ...+. ..-.+..-+.++++||.+++|+++.++|+.+.
T Consensus 122 llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 122 LLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred EEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHH
Confidence 89999999986521 12221 11112223679999999999999999999763
No 216
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=3.8e-17 Score=123.62 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccccc--------c--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLE--------S--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI 76 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 76 (223)
+|+++|.+|+|||||+++|+...-... . ....+.++......+.+....+.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986421100 0 012223344445555666778999999999988888
Q ss_pred chhhhcCCcEEEEEEeCCCcccH
Q psy15625 77 TSAYYRGAVGALLVYDIAKHLTY 99 (223)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~ 99 (223)
...+++.+|++++|+|..+....
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~ 103 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA 103 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH
Confidence 88899999999999999886543
No 217
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.76 E-value=1.4e-17 Score=140.37 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=108.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--cccccc------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN--EFNLES------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT 77 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 77 (223)
.+|+++|+.++|||||+++|+.. .+.... ....++++......+.+....+.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999863 221110 1223455555555566677899999999999998888
Q ss_pred hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
..+++.+|++++|+|..+.... ... .++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~-qT~---------------------------------------------------~~l 109 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMP-QTR---------------------------------------------------FVL 109 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcH-HHH---------------------------------------------------HHH
Confidence 8889999999999998764322 122 122
Q ss_pred HHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHH-------HcCCeEEEeecCCCC----------CHHHHHHHH
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAE-------RNNLSFIETSALDST----------NVETAFQNI 219 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~i 219 (223)
..... .++|+++|+||+|+.+.+.. ..++...+.. +..++++++||+++. |+..+|+.|
T Consensus 110 ~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~I 186 (594)
T TIGR01394 110 KKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAI 186 (594)
T ss_pred HHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHH
Confidence 22222 36899999999998642211 1233333332 235689999999996 799999998
Q ss_pred Hhh
Q psy15625 220 LTA 222 (223)
Q Consensus 220 ~~~ 222 (223)
++.
T Consensus 187 v~~ 189 (594)
T TIGR01394 187 VRH 189 (594)
T ss_pred HHh
Confidence 764
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=1.7e-17 Score=140.54 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc---ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
-|+++|..++|||||+++|++.. +++.....++++.....+...+ ...+.+||+||+..+.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58999999999999999999643 2333333444444333332222 2357999999998886666667888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|......-+..+ .+..+.. .++|
T Consensus 81 VVda~eg~~~qT~e----------------------------------------------------hl~il~~---lgi~ 105 (614)
T PRK10512 81 VVACDDGVMAQTRE----------------------------------------------------HLAILQL---TGNP 105 (614)
T ss_pred EEECCCCCcHHHHH----------------------------------------------------HHHHHHH---cCCC
Confidence 99987632211111 0111111 1344
Q ss_pred -EEEeecccchhhccCC--ChHHHHHHHHHcC---CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 -IMLVGNKSDLRHLRAV--PADEAKTFAERNN---LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 -~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.... ..+++..+....+ .+++++||++|.|++++++.|.+.
T Consensus 106 ~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 106 MLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred eEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 5799999998642211 1234445544444 679999999999999999998764
No 219
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.75 E-value=5.1e-17 Score=127.29 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=58.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE---------------------cC-eEEEEEEEeCCCC-
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---------------------DQ-KTIKAQIWDTAGQ- 70 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~D~~G~- 70 (223)
|+++|.||||||||+|++++........+..+.++......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998765444444443433332222 22 4478999999997
Q ss_pred ---ccccccchh---hhcCCcEEEEEEeCCC
Q psy15625 71 ---ERYRAITSA---YYRGAVGALLVYDIAK 95 (223)
Q Consensus 71 ---~~~~~~~~~---~~~~~~~~i~v~d~~~ 95 (223)
.++..+... .++.+|++++|+|+++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334444444 4999999999999984
No 220
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.75 E-value=3.2e-17 Score=138.23 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=58.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccc----cceeeeEEEEEEE--cCeE-----E-----EEEEEeCCCCcccc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----TIGVEFATRSIQV--DQKT-----I-----KAQIWDTAGQERYR 74 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~G~~~~~ 74 (223)
+..|+++|.+|+|||||+++|.+..+...... +++.++.+..... .+.. . .+.+|||||+..|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 45799999999999999999987654333222 2222211111000 0111 1 26899999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCCc
Q psy15625 75 AITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
.++...++.+|++++|+|.++.
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g 107 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEG 107 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCC
Confidence 8888888899999999998873
No 221
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=1.9e-17 Score=134.79 Aligned_cols=160 Identities=22% Similarity=0.204 Sum_probs=99.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccc---cccccceeeeEEEEE--------------EE----cC------eEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL---ESKSTIGVEFATRSI--------------QV----DQ------KTIK 61 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~--------------~~----~~------~~~~ 61 (223)
.+.++|+++|..++|||||+++|.+..... ......+........ .. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999997643211 111111111110000 00 11 1357
Q ss_pred EEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEE
Q psy15625 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLV 141 (223)
Q Consensus 62 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (223)
+.+||+||+.++..........+|++++|+|..+........
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-------------------------------------- 123 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-------------------------------------- 123 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH--------------------------------------
Confidence 899999999888776666777889999999987643111111
Q ss_pred eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHH
Q psy15625 142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERN---NLSFIETSALDSTNVETAF 216 (223)
Q Consensus 142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~ 216 (223)
..+..+... ...|+++++||+|+.+.... ..+++..+.... +++++++||+++.|+++++
T Consensus 124 -------------e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~ 188 (406)
T TIGR03680 124 -------------EHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALL 188 (406)
T ss_pred -------------HHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHH
Confidence 011111111 12478999999998642211 123344444332 5789999999999999999
Q ss_pred HHHHh
Q psy15625 217 QNILT 221 (223)
Q Consensus 217 ~~i~~ 221 (223)
++|..
T Consensus 189 e~L~~ 193 (406)
T TIGR03680 189 EAIEK 193 (406)
T ss_pred HHHHH
Confidence 99976
No 222
>KOG1707|consensus
Probab=99.74 E-value=8.7e-18 Score=136.07 Aligned_cols=168 Identities=26% Similarity=0.308 Sum_probs=123.4
Q ss_pred CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
|+.++....+||+++|..|+|||||+-++...++.+.-++... .-.....+....+...+.|++...+.......-++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence 3456677889999999999999999999999998766543321 11111333445567899999876666666667789
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.++++.++|++.++++.+.+.. +|+..+..
T Consensus 79 kA~vi~lvyavd~~~T~D~ist--------------------------------------------------~WLPlir~ 108 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRIST--------------------------------------------------KWLPLIRQ 108 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhh--------------------------------------------------hhhhhhhc
Confidence 9999999999999999888873 77777766
Q ss_pred ccC--CCceEEEeecccchhhccCCChHH-HHHHHHHcC-C-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HAD--QNIVIMLVGNKSDLRHLRAVPADE-AKTFAERNN-L-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..+ .++|+|+|+||+|.......+.+. ...+..+.. + ..++|||++..++.++|.....+
T Consensus 109 ~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 109 LFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred ccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhhe
Confidence 653 379999999999997655443343 333333332 1 26999999999999999886543
No 223
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.74 E-value=2.9e-17 Score=133.68 Aligned_cols=163 Identities=21% Similarity=0.201 Sum_probs=98.3
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCccc---ccccccceeeeEEEEEEE------------------c--C----e
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQV------------------D--Q----K 58 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~ 58 (223)
...++.++|+++|..++|||||+.+|.+.... .......+.......... + + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45667899999999999999999999663211 111112222211100000 0 0 0
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG 137 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
...+.+||+||+.++..........+|++++|+|..++. .......
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~--------------------------------- 130 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH--------------------------------- 130 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH---------------------------------
Confidence 257899999998766544444455568888888887643 1111110
Q ss_pred eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecCCCCCH
Q psy15625 138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSALDSTNV 212 (223)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i 212 (223)
+..+... ...|+++|+||+|+.+.... ..++++.+... .+.+++++||+++.|+
T Consensus 131 -------------------l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 131 -------------------LMALDII--GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred -------------------HHHHHHc--CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCH
Confidence 1111111 12468999999998653221 12334444433 2578999999999999
Q ss_pred HHHHHHHHhh
Q psy15625 213 ETAFQNILTA 222 (223)
Q Consensus 213 ~~~~~~i~~~ 222 (223)
+++++.|.+.
T Consensus 190 ~~L~~~L~~~ 199 (411)
T PRK04000 190 DALIEAIEEE 199 (411)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 224
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=5e-17 Score=131.83 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=103.6
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccc--------------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
....+.++|+++|+.++|||||+++|++..... ......+++.......+......+.++|+||+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 345568999999999999999999998632100 001133445555555565556678999999987
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE 151 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 151 (223)
+|..........+|++++|+|......-...+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~------------------------------------------------ 118 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE------------------------------------------------ 118 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHHH------------------------------------------------
Confidence 77655555567788888888876543221111
Q ss_pred hhHHHHHHhhhccCCCce-EEEeecccchhhccCCC---hHHHHHHHHHcC-----CeEEEeecCCCC--------CHHH
Q psy15625 152 NVERWLRELRDHADQNIV-IMLVGNKSDLRHLRAVP---ADEAKTFAERNN-----LSFIETSALDST--------NVET 214 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~--------~i~~ 214 (223)
.+..+.. .++| +++++||+|+.+..... .+++..+....+ ++++++||+++. ++.+
T Consensus 119 ----~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~ 191 (394)
T PRK12736 119 ----HILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIME 191 (394)
T ss_pred ----HHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHH
Confidence 1111221 2567 67899999986422211 234555555544 579999999983 6788
Q ss_pred HHHHHHh
Q psy15625 215 AFQNILT 221 (223)
Q Consensus 215 ~~~~i~~ 221 (223)
+++.+.+
T Consensus 192 Ll~~l~~ 198 (394)
T PRK12736 192 LMDAVDE 198 (394)
T ss_pred HHHHHHH
Confidence 8887754
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=7.3e-17 Score=130.99 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=103.1
Q ss_pred CCCCcc-ccceeEEEEEEcCCCCcHHHHHHHHhhCcc-------c-----c--cccccceeeeEEEEEEEcCeEEEEEEE
Q psy15625 1 MGTRED-EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------N-----L--ESKSTIGVEFATRSIQVDQKTIKAQIW 65 (223)
Q Consensus 1 ~~~~~~-~~~~~~~i~v~G~~~~GKStli~~l~~~~~-------~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
|+.+.. +..+.++|+++|.+++|||||+++|++... . . ......+++.......+......+.++
T Consensus 1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 344443 345579999999999999999999986210 0 0 011123444545555555555678999
Q ss_pred eCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecc
Q psy15625 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIA 145 (223)
Q Consensus 66 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 145 (223)
||||+.+|..........+|++++|+|..+.......
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~------------------------------------------- 117 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR------------------------------------------- 117 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHH-------------------------------------------
Confidence 9999876655455556677888888887653221111
Q ss_pred cccchhhhHHHHHHhhhccCCCceEE-EeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCCC------
Q psy15625 146 KHLTYENVERWLRELRDHADQNIVIM-LVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDST------ 210 (223)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~------ 210 (223)
..+..+.. .++|.+ +++||+|+.+.... ..+++..+....+ ++++++||+++.
T Consensus 118 ---------e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~ 185 (396)
T PRK12735 118 ---------EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDE 185 (396)
T ss_pred ---------HHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCC
Confidence 11111221 256755 57999998642211 1224555555543 679999999984
Q ss_pred ----CHHHHHHHHHh
Q psy15625 211 ----NVETAFQNILT 221 (223)
Q Consensus 211 ----~i~~~~~~i~~ 221 (223)
++.++++.|.+
T Consensus 186 ~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 186 EWEAKILELMDAVDS 200 (396)
T ss_pred cccccHHHHHHHHHh
Confidence 67788887764
No 226
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=9.3e-17 Score=122.38 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=107.5
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
......|+|.|.||||||||++++++.+......|+.+......++..+ ...++++||||.-+.-
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRP------------- 229 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRP------------- 229 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCC-------------
Confidence 3456789999999999999999999999887777776666666665444 4467999999932110
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc--cchhhhHHHHHHhhhccC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH--LTYENVERWLRELRDHAD 165 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~ 165 (223)
....+..+.. ....++. -.++|++++|++.. .+.+.....+..+.....
T Consensus 230 -----l~ErN~IE~q--Ai~AL~h----------------------l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~ 280 (346)
T COG1084 230 -----LEERNEIERQ--AILALRH----------------------LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK 280 (346)
T ss_pred -----hHHhcHHHHH--HHHHHHH----------------------hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence 0011111110 0011111 25567778887755 444666666777766553
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|....+. .++........ +.....+++..+.+++.+-..+..+
T Consensus 281 --~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 281 --APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred --CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 89999999999875322 23333333333 3447888999999998877666544
No 227
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=7.9e-17 Score=120.50 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=62.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccc-----------------cccceeeeEEEEEE--E---cCeEEEEEEEeCCCC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------KSTIGVEFATRSIQ--V---DQKTIKAQIWDTAGQ 70 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~~~D~~G~ 70 (223)
+|+++|..|+|||||+++|+........ ....+.++...... . ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 01112222222222 2 345678999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHLTY 99 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 99 (223)
.++......++..+|++++|+|..+..+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~ 110 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTS 110 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCH
Confidence 98888888889999999999998876544
No 228
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=7.5e-17 Score=130.98 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=100.1
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCccc------------c--cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN------------L--ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
++.++.++|+++|..++|||||+++|++.... . ......+++.......+......+.+|||||+.
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 44566899999999999999999999743110 0 001123445555556666666788999999988
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE 151 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 151 (223)
+|..........+|++++|+|..........+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e------------------------------------------------ 118 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTRE------------------------------------------------ 118 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH------------------------------------------------
Confidence 77654444556678888888877632221111
Q ss_pred hhHHHHHHhhhccCCCceE-EEeecccchhhccCCC---hHHHHHHHHHcC-----CeEEEeecCCCC--------CHHH
Q psy15625 152 NVERWLRELRDHADQNIVI-MLVGNKSDLRHLRAVP---ADEAKTFAERNN-----LSFIETSALDST--------NVET 214 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~--------~i~~ 214 (223)
.+..+.. .++|. ++++||+|+.+..... .++++.+....+ ++++++||+++. ++.+
T Consensus 119 ----~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ 191 (394)
T TIGR00485 119 ----HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILE 191 (394)
T ss_pred ----HHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHH
Confidence 1111221 24565 4689999986422211 235566666554 689999999875 3455
Q ss_pred HHHHHH
Q psy15625 215 AFQNIL 220 (223)
Q Consensus 215 ~~~~i~ 220 (223)
+++.+.
T Consensus 192 ll~~l~ 197 (394)
T TIGR00485 192 LMDAVD 197 (394)
T ss_pred HHHHHH
Confidence 665554
No 229
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=7.6e-17 Score=123.40 Aligned_cols=160 Identities=19% Similarity=0.129 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccch---hhhcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITS---AYYRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~---~~~~~~~ 85 (223)
.|+++|.||+|||||+++++..+.....+++.+..+.-..+.+ ...-+|.+-|+||..+-. .+-. ..+..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4889999999999999999999887777787777666666666 334478999999954432 2222 3366778
Q ss_pred EEEEEEeCCCccc---HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 86 GALLVYDIAKHLT---YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 86 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+++|+|++..+. .+..+...+++..+.. .+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--------------------------------------------~L-- 273 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--------------------------------------------KL-- 273 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhH--------------------------------------------Hh--
Confidence 8888888886553 4444444444422111 11
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|.+||+||+|+....+......+.+....+.. .+++||.+++|++++...+.+.
T Consensus 274 ---~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~ 331 (369)
T COG0536 274 ---AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAEL 331 (369)
T ss_pred ---ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHH
Confidence 36899999999996542222233334444444544 2239999999999998887653
No 230
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.70 E-value=6.1e-17 Score=121.50 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=57.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccc---------------------------c--ccccceeeeEEEEEEEcCeEEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNL---------------------------E--SKSTIGVEFATRSIQVDQKTIKAQ 63 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~ 63 (223)
+|+++|..++|||||+.+|+...-.. . .....+++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996421100 0 001223344444444555667899
Q ss_pred EEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 64 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
+||+||+..+.......++.+|++++|+|.++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999876665555566778888888888764
No 231
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.69 E-value=6.9e-16 Score=124.40 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE---------------------c-CeEEEEEEEeCCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---------------------D-QKTIKAQIWDTAG 69 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~D~~G 69 (223)
++|+++|.||||||||+|+|++..+.....+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999998876544454444444433221 1 2346789999999
Q ss_pred Cc----cccccchhh---hcCCcEEEEEEeCCC
Q psy15625 70 QE----RYRAITSAY---YRGAVGALLVYDIAK 95 (223)
Q Consensus 70 ~~----~~~~~~~~~---~~~~~~~i~v~d~~~ 95 (223)
.. ....+...+ ++.+|++++|+|+++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 53 233344444 899999999999983
No 232
>CHL00071 tufA elongation factor Tu
Probab=99.69 E-value=5e-16 Score=126.61 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=93.8
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccccc--------------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--------------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
+++.++|+++|.+++|||||+++|++...... .....+++.......+......+.++|+||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999997522100 0112344444444445555567889999998766
Q ss_pred cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625 74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV 153 (223)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 153 (223)
-......+..+|++++|+|......-...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~--------------------------------------------------- 117 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTK--------------------------------------------------- 117 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHH---------------------------------------------------
Confidence 55555556777888888887653321111
Q ss_pred HHHHHHhhhccCCCce-EEEeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCCCC
Q psy15625 154 ERWLRELRDHADQNIV-IMLVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDSTN 211 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 211 (223)
..+..+.. .++| +++++||+|+.+.... ..+++..+....+ ++++++||.++.+
T Consensus 118 -~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 118 -EHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred -HHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 11111221 2567 7789999998642221 1234555555443 6799999999863
No 233
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=9.2e-16 Score=113.32 Aligned_cols=154 Identities=13% Similarity=0.185 Sum_probs=85.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccccccccccee---eeEEEEEEEcCeEEEEEEEeCCCCccccccchhh-----hc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV---EFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY-----YR 82 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-----~~ 82 (223)
.+||+++|.+|+|||||+|+|++...........+. +.....+... ....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986554322222221 1111111111 12368999999965432222222 44
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
++|.++++.+. .+...+ ..++..+..
T Consensus 80 ~~d~~l~v~~~----~~~~~d--------------------------------------------------~~~~~~l~~ 105 (197)
T cd04104 80 EYDFFIIISST----RFSSND--------------------------------------------------VKLAKAIQC 105 (197)
T ss_pred CcCEEEEEeCC----CCCHHH--------------------------------------------------HHHHHHHHH
Confidence 55555554221 111111 133333333
Q ss_pred ccCCCceEEEeecccchhhccC-----------CChHHHHHHHH----HcC---CeEEEeecC--CCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRA-----------VPADEAKTFAE----RNN---LSFIETSAL--DSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~~---~~~~~~Sa~--~~~~i~~~~~~i~~~ 222 (223)
. +.|+++|+||+|+..... ...++.++... ..+ .+++.+|+. .++++..+.+.|+..
T Consensus 106 ~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 106 M---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred h---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 2 578999999999842111 01112222222 222 258899998 579999999988753
No 234
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=6e-16 Score=116.09 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNL 38 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~ 38 (223)
||+++|..++|||||++++....+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 68999999999999999999765543
No 235
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=1.3e-15 Score=117.17 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=62.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccccccc--------------------ccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--------------------STIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.+|+++|++|+|||||+++|+...-..... ...+.++......+.+....+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998531110000 011234445555667777899999999998
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcc
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
++.......++.+|++++|+|.++..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~ 108 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGV 108 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCc
Confidence 87776667788999999999987653
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=3.8e-16 Score=120.81 Aligned_cols=88 Identities=23% Similarity=0.280 Sum_probs=59.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccccccc------c----------cceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESK------S----------TIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI 76 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 76 (223)
+|+++|.+|+|||||+++|+......... . ..+.+.......+.+....+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532111000 0 0011222222334445568899999998877777
Q ss_pred chhhhcCCcEEEEEEeCCCcccHH
Q psy15625 77 TSAYYRGAVGALLVYDIAKHLTYE 100 (223)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~ 100 (223)
...+++.+|++++|+|.+......
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~ 104 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG 104 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH
Confidence 778888999999999988765543
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=2.4e-15 Score=122.06 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=99.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccc--------------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
..+.++|+++|..++|||||+++|++..... ......+++.......+......+.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 3457999999999999999999998732110 00113344555555555555667899999998766
Q ss_pred cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625 74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV 153 (223)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 153 (223)
..........+|++++|+|..........
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~--------------------------------------------------- 117 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTR--------------------------------------------------- 117 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHH---------------------------------------------------
Confidence 55455556777888888887654321111
Q ss_pred HHHHHHhhhccCCCceEE-EeecccchhhccCC---ChHHHHHHHHHc-----CCeEEEeecCCCC----------CHHH
Q psy15625 154 ERWLRELRDHADQNIVIM-LVGNKSDLRHLRAV---PADEAKTFAERN-----NLSFIETSALDST----------NVET 214 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~----------~i~~ 214 (223)
..+..+.. .++|.+ +++||+|+.+.... ...++..+.... +++++++||+++. ++.+
T Consensus 118 -~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ 193 (396)
T PRK00049 118 -EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILE 193 (396)
T ss_pred -HHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHH
Confidence 11122222 257876 58999998642111 112344444443 3679999999875 5678
Q ss_pred HHHHHHh
Q psy15625 215 AFQNILT 221 (223)
Q Consensus 215 ~~~~i~~ 221 (223)
+++.|.+
T Consensus 194 ll~~l~~ 200 (396)
T PRK00049 194 LMDAVDS 200 (396)
T ss_pred HHHHHHh
Confidence 8887764
No 238
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=8.2e-16 Score=118.38 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=60.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccc-----c-----------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNL-----E-----------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI 76 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 76 (223)
+|+++|.+|+|||||+++|+...-.. . .....+++.......+.+....+.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421100 0 0012234444444455556678999999998887777
Q ss_pred chhhhcCCcEEEEEEeCCCcc
Q psy15625 77 TSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~ 97 (223)
....++.+|++++|+|..+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~ 101 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV 101 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC
Confidence 777888888888888887644
No 239
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=2.9e-15 Score=111.95 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=62.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccccc----------------ccccceeeeEEEEEEEc--------CeEEEEEEEeCC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVD--------QKTIKAQIWDTA 68 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~ 68 (223)
+|+++|..++|||||+.+|+...-... ....+++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999976431100 00111111112222232 347789999999
Q ss_pred CCccccccchhhhcCCcEEEEEEeCCCcccHH
Q psy15625 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYE 100 (223)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 100 (223)
|+.++......+++.+|++++|+|..+.....
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~ 113 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQ 113 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHH
Confidence 99999998899999999999999998765443
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.65 E-value=3.4e-15 Score=123.10 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=96.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcc------cc--------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF------NL--------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
..++.++|+++|.+++|||||+++|+.... .. ......+++.......+......+.++|+||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 456789999999999999999999985211 11 1122234444444444555556889999999988
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
|..........+|++++|+|..+...-...+
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e------------------------------------------------- 187 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKE------------------------------------------------- 187 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-------------------------------------------------
Confidence 7666666677888888888877643222111
Q ss_pred hHHHHHHhhhccCCCce-EEEeecccchhhccCC---ChHHHHHHHHHc-----CCeEEEeecCCCC
Q psy15625 153 VERWLRELRDHADQNIV-IMLVGNKSDLRHLRAV---PADEAKTFAERN-----NLSFIETSALDST 210 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~ 210 (223)
++..+.. .++| +++++||+|+.+.... ..+++..+.... +++++++|+.++.
T Consensus 188 ---~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 188 ---HILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred ---HHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 1111221 2567 7789999998642211 122455555543 4679999998874
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.65 E-value=4.8e-15 Score=121.66 Aligned_cols=158 Identities=14% Similarity=0.133 Sum_probs=103.7
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCccc--------------c---------------cccccceeeeEEEEEEEcC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------L---------------ESKSTIGVEFATRSIQVDQ 57 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~---------------~~~~~~~~~~~~~~~~~~~ 57 (223)
.+.+.++|+++|..++|||||+.+|+...-. . .....-+.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 3567899999999999999999998742110 0 0011224455555556667
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG 137 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
....+.++|+||+.+|.......+..+|++++|+|..+.. ++....|..+.+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~--------------------------- 134 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTR--------------------------- 134 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHH---------------------------
Confidence 7778999999999999888888899999999999987631 211100000000
Q ss_pred eEEEeecccccchhhhHHHHHHhhhccCCCc-eEEEeecccchhhccCC-------ChHHHHHHHHHcC-----CeEEEe
Q psy15625 138 ALLVYDIAKHLTYENVERWLRELRDHADQNI-VIMLVGNKSDLRHLRAV-------PADEAKTFAERNN-----LSFIET 204 (223)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~-----~~~~~~ 204 (223)
..+.... ..++ ++++++||+|+.+. .+ ..++++.++.+.| ++++++
T Consensus 135 -----------------eh~~~~~---~~gi~~iIV~vNKmD~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipi 193 (447)
T PLN00043 135 -----------------EHALLAF---TLGVKQMICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPI 193 (447)
T ss_pred -----------------HHHHHHH---HcCCCcEEEEEEcccCCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 0111111 1255 57889999997521 11 1345666666665 569999
Q ss_pred ecCCCCCHH
Q psy15625 205 SALDSTNVE 213 (223)
Q Consensus 205 Sa~~~~~i~ 213 (223)
||++|.|+.
T Consensus 194 Sa~~G~ni~ 202 (447)
T PLN00043 194 SGFEGDNMI 202 (447)
T ss_pred ecccccccc
Confidence 999999985
No 242
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=7e-16 Score=115.07 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=105.7
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
+-.+..+++|+++|.+|+|||||||+|+.....+...-..+.+....... ......+.+||+||..+...-..
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~~~l~lwDtPG~gdg~~~D~------ 105 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDGENLVLWDTPGLGDGKDKDA------ 105 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccccceEEecCCCcccchhhhH------
Confidence 34466789999999999999999999998776666655555555444332 23335789999999654322111
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
+.-+.++ .++...|.+++++++.+..-..+...+..-+...
T Consensus 106 ---------------~~r~~~~-----------------------d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~- 146 (296)
T COG3596 106 ---------------EHRQLYR-----------------------DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG- 146 (296)
T ss_pred ---------------HHHHHHH-----------------------HHhhhccEEEEeccCCCccccCCHHHHHHHHHhc-
Confidence 0111111 1234466677777777665555543333333322
Q ss_pred CCCceEEEeecccchhhcc-------CCChHHHHHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLR-------AVPADEAKTFAER----------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++++|++|...+- ......++++.++ .--+++..+...++|++++...++++
T Consensus 147 -~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 147 -LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred -cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHh
Confidence 248999999999986531 0111122222211 12368888899999999999998875
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.65 E-value=1e-15 Score=126.51 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=59.7
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-------------------------------cccceeeeEEEEEEE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-------------------------------KSTIGVEFATRSIQV 55 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 55 (223)
.++..++|+++|..++|||||+++|+...-.... ...-+.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4567799999999999999999999754211100 001122333444445
Q ss_pred cCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 56 DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 56 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
......+.++||||+..+..........+|++++|+|....
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 55566889999999877654444456777888888887553
No 244
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.64 E-value=2.9e-15 Score=115.75 Aligned_cols=169 Identities=15% Similarity=0.214 Sum_probs=98.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccc----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
.++|+++|.+|+|||||+|+|++..+.... .++.+.+.....+..++..+.+.+|||||..+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~----- 78 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN----- 78 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-----
Confidence 589999999999999999999998765442 23434444444555567778999999999543321
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHh-cCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhHHHHH
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDH-ADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVERWLR 158 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~ 158 (223)
+...+..+..++++.-+. -.....+ .......-.++++++++++++.. ....++ ..+.
T Consensus 79 --------------~~~~~~~i~~yi~~q~~~~l~~e~~~-----~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~-~~lk 138 (276)
T cd01850 79 --------------NSDCWKPIVDYIDDQFDQYLREESRI-----KRNPRIPDTRVHACLYFIEPTGHGLKPLDI-EFMK 138 (276)
T ss_pred --------------chhhHHHHHHHHHHHHHHHHHHHhhh-----cccccCCCCceEEEEEEEeCCCCCCCHHHH-HHHH
Confidence 122333333322222110 0000000 00001112368888999887752 222222 2233
Q ss_pred HhhhccCCCceEEEeecccchhh--ccCCChHHHHHHHHHcCCeEEEeecCC
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRH--LRAVPADEAKTFAERNNLSFIETSALD 208 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 208 (223)
.+ .. ++|+++|+||+|+.. ......+.+++.+..++++++......
T Consensus 139 ~l---~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 139 RL---SK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HH---hc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 33 22 689999999999843 222344566677777888888766543
No 245
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.8e-15 Score=119.43 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=110.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC---eEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ---KTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
+.=|.++|+-.-|||||+.++.+..+...-.-. ++......++.. ..-.+.|+|||||..|..++..-.+-+|.+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGG--ITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGG--ITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCc--eeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 345889999999999999999998876554444 344444333332 334789999999999999999888889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|++..+.---+.++ .+......+
T Consensus 83 ILVVa~dDGv~pQTiE-------------------------------------------------------AI~hak~a~ 107 (509)
T COG0532 83 ILVVAADDGVMPQTIE-------------------------------------------------------AINHAKAAG 107 (509)
T ss_pred EEEEEccCCcchhHHH-------------------------------------------------------HHHHHHHCC
Confidence 9999988744333332 223333358
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcC---------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNN---------LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|++|++||+|.++ ........-..++| ..++++||++|+|++++++.+.-.
T Consensus 108 vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 108 VPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred CCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 99999999999874 33344444444444 369999999999999999987643
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=1.1e-14 Score=121.62 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=64.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccccc---------------c-----cccceeeeEEEEEEEcCeEEEEEEEeC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------S-----KSTIGVEFATRSIQVDQKTIKAQIWDT 67 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~ 67 (223)
.....+|+++|++++|||||.++|+...-... . ...-+.++......+.+..+.+.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 34567999999999999999999974111000 0 011133444444556666788999999
Q ss_pred CCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625 68 AGQERYRAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
||+.++......+++.+|++++|+|..+..
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv 116 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGV 116 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence 999888876777889999999999988754
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=2.2e-15 Score=129.21 Aligned_cols=155 Identities=23% Similarity=0.197 Sum_probs=91.7
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc--------------c-----------------ccceeeeEEEEEE
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------------K-----------------STIGVEFATRSIQ 54 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------~-----------------~~~~~~~~~~~~~ 54 (223)
....+.++|+++|.+++|||||+++|+...-.... . ..-+.+.......
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 34556789999999999999999999864321110 0 0012223333333
Q ss_pred EcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccc
Q psy15625 55 VDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRG 134 (223)
Q Consensus 55 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (223)
+......+.++||||+..+.......+..+|++++|+|......-
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~----------------------------------- 143 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT----------------------------------- 143 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-----------------------------------
Confidence 444555788999999876654444456677777777776543211
Q ss_pred cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC----ChHHHHHHHHHcC---CeEEEeecC
Q psy15625 135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV----PADEAKTFAERNN---LSFIETSAL 207 (223)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~---~~~~~~Sa~ 207 (223)
+.. .....+... ...|+++++||+|+.+.... ...++..+....+ ++++++||+
T Consensus 144 ----------------~t~-e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~ 204 (632)
T PRK05506 144 ----------------QTR-RHSFIASLL--GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISAL 204 (632)
T ss_pred ----------------cCH-HHHHHHHHh--CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecc
Confidence 110 001111111 13578999999998641111 1123333344444 359999999
Q ss_pred CCCCHHH
Q psy15625 208 DSTNVET 214 (223)
Q Consensus 208 ~~~~i~~ 214 (223)
+|.|+.+
T Consensus 205 ~g~ni~~ 211 (632)
T PRK05506 205 KGDNVVT 211 (632)
T ss_pred cCCCccc
Confidence 9999873
No 248
>KOG0462|consensus
Probab=99.62 E-value=9.9e-15 Score=117.81 Aligned_cols=162 Identities=23% Similarity=0.248 Sum_probs=113.0
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCccc---------------ccccccceeeeEEEEEE-EcCeEEEEEEEeCCC
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN---------------LESKSTIGVEFATRSIQ-VDQKTIKAQIWDTAG 69 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G 69 (223)
++.++..++.|+-.-.=|||||..+|+...-. ......+++--.+..+. .+++.+.++++||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 44566788999999999999999999864321 11122333322222222 236678999999999
Q ss_pred CccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc
Q psy15625 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT 149 (223)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 149 (223)
|.+|..-...-+..|+++++|+|.+.....+.+..++..+
T Consensus 135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf---------------------------------------- 174 (650)
T KOG0462|consen 135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF---------------------------------------- 174 (650)
T ss_pred cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----------------------------------------
Confidence 9999988888888888888888887766666665333322
Q ss_pred hhhhHHHHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+ .+.-+|.|+||+|++..+.- -..+.+.+....+.+++.+|||+|.|++++++.|++.
T Consensus 175 -----------e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 175 -----------E----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred -----------H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence 2 37788999999999862211 1123333333445679999999999999999999874
No 249
>KOG0077|consensus
Probab=99.62 E-value=1.5e-15 Score=104.40 Aligned_cols=157 Identities=15% Similarity=0.225 Sum_probs=112.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
++.-|++++|..|+|||||++.|....... +.||.-.+ ... +.-.++.++.+|.+|+...+..++.|+..+++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT--SE~--l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEE--LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC--hHH--heecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456799999999999999999998876533 33332211 111 2224568899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+.+|+.+.+.+......++.+.. .+ .-.+.
T Consensus 93 ~lvda~d~er~~es~~eld~ll~------------------------------------------------~e--~la~v 122 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLS------------------------------------------------DE--SLATV 122 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHh------------------------------------------------HH--HHhcC
Confidence 99999998888877754443311 11 11378
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH------cC-----------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER------NN-----------LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~-----------~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++.+||+|.+. ..++++.+....- .+ ++++.||...+.+..+.|.|+.+.
T Consensus 123 p~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 123 PFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 9999999999876 2344444333211 11 248889999988888888877653
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.61 E-value=1.2e-14 Score=119.30 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=66.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc---------------------------cccccceeeeEEEEEEEcCe
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL---------------------------ESKSTIGVEFATRSIQVDQK 58 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 58 (223)
+.+.++|+++|..++|||||+.+|+...- .. ......+.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 56789999999999999999999976211 00 00112244555555666777
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
...+.++|+||+.+|..........+|++++|+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 77899999999988877777778889999999998764
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.61 E-value=5.5e-15 Score=120.36 Aligned_cols=149 Identities=22% Similarity=0.206 Sum_probs=90.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccc-------------------------------cccceeeeEEEEEEEcCeEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-------------------------------KSTIGVEFATRSIQVDQKTI 60 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (223)
+||+++|+.++|||||+.+|+...-.... ...-+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999643211000 00112233444444555566
Q ss_pred EEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEE
Q psy15625 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALL 140 (223)
Q Consensus 61 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (223)
.+.++||||+.+|.......+..+|++++|+|......-+..+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~------------------------------------- 123 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR------------------------------------- 123 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-------------------------------------
Confidence 8899999998877655555677888888888876543211111
Q ss_pred EeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCC----hHHHHHHHHHcC---CeEEEeecCCCCCHH
Q psy15625 141 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP----ADEAKTFAERNN---LSFIETSALDSTNVE 213 (223)
Q Consensus 141 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~ 213 (223)
. +..+... ...++++++||+|+.+..... .++...+....+ ++++++||++|.|++
T Consensus 124 --------------~-~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 124 --------------H-SYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred --------------H-HHHHHHc--CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 0 1111111 124688999999986422111 123333334444 469999999999987
Q ss_pred H
Q psy15625 214 T 214 (223)
Q Consensus 214 ~ 214 (223)
+
T Consensus 187 ~ 187 (406)
T TIGR02034 187 S 187 (406)
T ss_pred c
Confidence 5
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.61 E-value=1.8e-14 Score=107.74 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccce--eeeEEEEEEEcCeEEEEEEEeCCCCccccc-----cchhhhcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAGQERYRA-----ITSAYYRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~ 85 (223)
||+++|+.++||||+.+.+..+..+... ...+ .+.....+. ....+.+++||+||+..+-. .....++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 7999999999999999999876543322 2222 333333332 23456899999999865433 4566799999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|+...+..+.+..+.+.+ ..+....
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i------------------------------------------------~~l~~~s- 109 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCI------------------------------------------------EALRQYS- 109 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHH------------------------------------------------HHHHHHS-
T ss_pred EEEEEEEcccccHHHHHHHHHHHH------------------------------------------------HHHHHhC-
Confidence 999999999666666666544433 2233333
Q ss_pred CCceEEEeecccchhh--ccCCC----hHHHHHHHHHcC---CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRH--LRAVP----ADEAKTFAERNN---LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~--~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++.+.|+++|+|+.. .+... .+.+.+.+...+ +.++.+|.-+ +.+-+.|..+++.
T Consensus 110 p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 110 PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQK 174 (232)
T ss_dssp TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHT
T ss_pred CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHH
Confidence 3789999999999843 11111 122333333445 6678877776 6888888888763
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.61 E-value=1.3e-14 Score=119.10 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=61.4
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcc------ccc--------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEF------NLE--------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
....+.++|+++|..++|||||+++|.+... ... .....+++.......+......+.++||||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 3456789999999999999999999973210 000 11123445555555566666688999999987
Q ss_pred cccccchhhhcCCcEEEEEEeCCCc
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
++-.........+|++++|+|....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCC
Confidence 6654444445567888888876553
No 254
>KOG1191|consensus
Probab=99.60 E-value=1e-14 Score=116.44 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=52.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
..++|+++|+||||||||+|+|.+....... +-.|++.+.....++-.++++.+.||+|..+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 3589999999999999999999999887666 5567777777777777888999999999544
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.60 E-value=4e-14 Score=95.73 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++. .+.++||||..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~ 58 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGIN 58 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCc
Confidence 6999999999999999999986432 222233333333333344444 45799999954
No 256
>PRK13351 elongation factor G; Reviewed
Probab=99.60 E-value=2.3e-14 Score=124.23 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=67.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccc--------cc-----cc---ccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------LE-----SK---STIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
+...+|+++|..|+|||||+++|+...-. .. +. ...+.+.......+.+....+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 35679999999999999999999853210 00 00 0112223333333445567899999999998
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
+......+++.+|++++|+|.++........
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~ 116 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET 116 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 8888888999999999999998876655443
No 257
>KOG1532|consensus
Probab=99.58 E-value=1.4e-14 Score=107.87 Aligned_cols=201 Identities=14% Similarity=0.247 Sum_probs=120.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
.+..|+++|..|+|||||+++|..........+- -++.++....+... .++.+.|+.. |+.....|--+.++.|+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppY-viNLDPAv~~vpy~-aniDIRDtVk---YkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPY-VINLDPAVRNVPYP-ANIDIRDTVK---YKEVMKQYQLGPNGGIV 92 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCe-EEeCCHHHhcCCCc-cCCchhhhhh---HHHHHHHhCCCCCcchh
Confidence 4578999999999999999999875543333211 12332322222222 2456666654 77777777777777763
Q ss_pred EEeCCCcccH-HHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce--------------eEEEeeccc---ccchh
Q psy15625 90 VYDIAKHLTY-ENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG--------------ALLVYDIAK---HLTYE 151 (223)
Q Consensus 90 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~~~---~~~~~ 151 (223)
+..+-| ..+.+..+-++++ .....-+++++|++...|.+.+.+ ++|++|... +.++.
T Consensus 93 ----TsLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM 167 (366)
T KOG1532|consen 93 ----TSLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM 167 (366)
T ss_pred ----hhHHHHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH
Confidence 222221 1222233333333 334778999999998888876655 345555433 33444
Q ss_pred hhHHHHHHhhhccCCCceEEEeecccchhhcc----CCC-hHHHHHHHH---------------------HcCCeEEEee
Q psy15625 152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLR----AVP-ADEAKTFAE---------------------RNNLSFIETS 205 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~-~~~~~~~~~---------------------~~~~~~~~~S 205 (223)
+ ..+........-+.|+|++.||+|+.+.. +.. .+.+++-.. ..++..+-+|
T Consensus 168 S--NMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VS 245 (366)
T KOG1532|consen 168 S--NMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVS 245 (366)
T ss_pred H--HHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEe
Confidence 3 44445555566789999999999986521 000 011111111 1246789999
Q ss_pred cCCCCCHHHHHHHHHhh
Q psy15625 206 ALDSTNVETAFQNILTA 222 (223)
Q Consensus 206 a~~~~~i~~~~~~i~~~ 222 (223)
+.+|.|.+++|..+-+.
T Consensus 246 s~tG~G~ddf~~av~~~ 262 (366)
T KOG1532|consen 246 SVTGEGFDDFFTAVDES 262 (366)
T ss_pred cccCCcHHHHHHHHHHH
Confidence 99999999999987653
No 258
>PTZ00258 GTP-binding protein; Provisional
Probab=99.58 E-value=7.9e-14 Score=111.49 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=64.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERY 73 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~ 73 (223)
...++|+++|.||||||||+|+|++........|..+.+.....+.+...+ ..+.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 345799999999999999999999988766666776666666666554332 34899999995432
Q ss_pred cc-------cchhhhcCCcEEEEEEeCC
Q psy15625 74 RA-------ITSAYYRGAVGALLVYDIA 94 (223)
Q Consensus 74 ~~-------~~~~~~~~~~~~i~v~d~~ 94 (223)
.. .....++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 1123478899999999985
No 259
>KOG1145|consensus
Probab=99.57 E-value=4.2e-14 Score=114.28 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=110.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+.-|-++|.-.=|||||+.+|.+..+...-.-.++-.+.-..+.++ .+-.+.|.||||+..|..++..-....|.+++|
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 4568899999999999999999988765543333222323333344 335889999999999999998888888999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
+...|.---+.++ .+......+.|+
T Consensus 232 VAadDGVmpQT~E-------------------------------------------------------aIkhAk~A~Vpi 256 (683)
T KOG1145|consen 232 VAADDGVMPQTLE-------------------------------------------------------AIKHAKSANVPI 256 (683)
T ss_pred EEccCCccHhHHH-------------------------------------------------------HHHHHHhcCCCE
Confidence 9876643322222 223333358999
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcC---------CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNN---------LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++++||+|.++ ...+...+-....| ++++++||++|.|++.+-+.+.-
T Consensus 257 VvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 257 VVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred EEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 99999999875 44555555554444 46999999999999999888764
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.57 E-value=8.8e-14 Score=102.72 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=89.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccccccc--ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
++|+++|.+|+|||||+|++++........ +..+.......... ....+.++||||..+.....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~viDTPG~~d~~~~~------------ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW--DGRRVNVIDTPGLFDTSVSP------------ 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE--CCeEEEEEECcCCCCccCCh------------
Confidence 479999999999999999999886543332 12222222222223 34578999999954432100
Q ss_pred EEeCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC--
Q psy15625 90 VYDIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-- 166 (223)
Q Consensus 90 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-- 166 (223)
..+.. ..+.+.. .....++++++.++.. .+..+ ...+..+....+.
T Consensus 67 ----------~~~~~~i~~~~~~-------------------~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~ 115 (196)
T cd01852 67 ----------EQLSKEIVRCLSL-------------------SAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKV 115 (196)
T ss_pred ----------HHHHHHHHHHHHh-------------------cCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHh
Confidence 00000 0000000 0123455555555544 23222 1223333322221
Q ss_pred CceEEEeecccchhhccCC------ChHHHHHHHHHcCCeEEEeec-----CCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAV------PADEAKTFAERNNLSFIETSA-----LDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~Sa-----~~~~~i~~~~~~i~~~ 222 (223)
-.++++++|+.|......+ ....++.+....+-.++..+. ..+.++.++++.|.++
T Consensus 116 ~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 116 LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 2478899999996542211 124455555665656655554 4577888888887654
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=7.3e-14 Score=120.92 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=64.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccc-----ccc-----------ccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----ESK-----------STIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.+...+|+++|.+|+|||||+++|+...-.. ... ...+++.......+.+....+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3446799999999999999999997422110 000 112334444444455556789999999998
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTY 99 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 99 (223)
++.......++.+|++++|+|..+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~ 114 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQP 114 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCCh
Confidence 8777777788888999999988775443
No 262
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=9.7e-15 Score=113.85 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=66.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC----------------eEEEEEEEeCCCCc---
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ----------------KTIKAQIWDTAGQE--- 71 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~G~~--- 71 (223)
.++++++|.||||||||+|+++.......+.|+.++++......+.. ....++++|++|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999998777778888877776655421 23468999999842
Q ss_pred -c---ccccchhhhcCCcEEEEEEeCCC
Q psy15625 72 -R---YRAITSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 72 -~---~~~~~~~~~~~~~~~i~v~d~~~ 95 (223)
+ .++.....+|.+|+++.|+++++
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2 23444455899999999999984
No 263
>KOG1490|consensus
Probab=99.55 E-value=2.9e-14 Score=114.11 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=113.3
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
+...++.-.++++|.||+|||||+|.++.......+.++.+....... ++.....+++.||||.-+.-.-
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plE-------- 231 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEE-------- 231 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchh--------
Confidence 344566788999999999999999999998887666666544444433 3556667899999994321110
Q ss_pred cEEEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc--cchhhhHHHHHHhh
Q psy15625 85 VGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH--LTYENVERWLRELR 161 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~ 161 (223)
+.+..+... .-+..+ -.+++|++|.+.. .+.....+.+..+.
T Consensus 232 ----------drN~IEmqsITALAHL-------------------------raaVLYfmDLSe~CGySva~QvkLfhsIK 276 (620)
T KOG1490|consen 232 ----------DRNIIEMQIITALAHL-------------------------RSAVLYFMDLSEMCGYSVAAQVKLYHSIK 276 (620)
T ss_pred ----------hhhHHHHHHHHHHHHh-------------------------hhhheeeeechhhhCCCHHHHHHHHHHhH
Confidence 011111110 111222 2347777787755 34455556666676
Q ss_pred hccCCCceEEEeecccchhhccCCChHH---HHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADE---AKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.... ++|+|+|+||+|+.....+..+. +..+....+++++++|+.+.+|+.++....++
T Consensus 277 pLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 277 PLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred HHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHH
Confidence 6654 78999999999998766665543 33333445689999999999999998877654
No 264
>PRK12739 elongation factor G; Reviewed
Probab=99.54 E-value=1.7e-13 Score=118.58 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=61.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccc-----ccc-----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-----LES-----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
+...+|+++|.+++|||||+++|+...-. ... ....+++.......+.+....+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 45678999999999999999999752110 000 01122333333333444566889999999887
Q ss_pred ccccchhhhcCCcEEEEEEeCCCccc
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLT 98 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~ 98 (223)
+.......++.+|++++|+|......
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~ 111 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVE 111 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence 77767777888888888888876543
No 265
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.54 E-value=6.9e-14 Score=100.26 Aligned_cols=80 Identities=29% Similarity=0.385 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchh---hhcCCcEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSA---YYRGAVGA 87 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~~~~ 87 (223)
-.|+++|++|+|||+|+.+|..+........- .. .....+ ......+.++|+||+...+..... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---EN-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SE-EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cC-CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998654333221 11 111212 223447899999999887754433 47788899
Q ss_pred EEEEeCCC
Q psy15625 88 LLVYDIAK 95 (223)
Q Consensus 88 i~v~d~~~ 95 (223)
++|+|.+.
T Consensus 80 IfvvDSs~ 87 (181)
T PF09439_consen 80 IFVVDSST 87 (181)
T ss_dssp EEEEETTT
T ss_pred EEEEeCcc
Confidence 99999874
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.53 E-value=1.5e-13 Score=114.20 Aligned_cols=103 Identities=14% Similarity=0.128 Sum_probs=68.5
Q ss_pred eeEEEeCCCcccc-----------ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC
Q psy15625 117 IVIMLVGPPSLLR-----------RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185 (223)
Q Consensus 117 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 185 (223)
.-++++++|+... +....+|++++++|+....+..+. .....+.... .+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 4456677776632 345789999999999886555542 2333333321 13599999999998542222
Q ss_pred ChHHHHHHHH----Hc---CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 186 PADEAKTFAE----RN---NLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 186 ~~~~~~~~~~----~~---~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..+....+.. +. ...++++||+.|.|++++++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3445555432 22 235999999999999999999875
No 267
>KOG3905|consensus
Probab=99.53 E-value=4e-13 Score=102.40 Aligned_cols=206 Identities=17% Similarity=0.238 Sum_probs=126.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc--CeEEEEEEEeCCCCccccccchhhhcCC----c
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD--QKTIKAQIWDTAGQERYRAITSAYYRGA----V 85 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~----~ 85 (223)
-+|+|+|..++|||||+.+|.+.+ ...+..+..|-...+.-+ +...++.+|-..|...+..+....+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 479999999999999999999876 333444555555544432 3345688999999877777777665543 4
Q ss_pred EEEEEEeCCCccc-HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecc-----------cccchhhh
Q psy15625 86 GALLVYDIAKHLT-YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIA-----------KHLTYENV 153 (223)
Q Consensus 86 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~~~~ 153 (223)
.++++.+++++.. +++++.|..-++++.+.--. -..+......++.+.-..++.+.+-. .....++.
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i-~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKI-PPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 7789999999965 88899999999888764210 00000000001111111111111000 00000000
Q ss_pred HHHHHHhhhccCCCceEEEeecccchhh----ccC-------CChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 154 ERWLRELRDHADQNIVIMLVGNKSDLRH----LRA-------VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.-.+..=......++|++||++|||... ..+ .....++.|+.++|...+++|+|...|++-+..+|.+
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 0000000001123789999999999832 222 2334678889999999999999999999999999875
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.52 E-value=2e-13 Score=89.72 Aligned_cols=140 Identities=23% Similarity=0.264 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
|++++|..|+|||||++++.++..... .+...++ +.+ -.+||||--
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve~-------~d~----~~IDTPGEy--------------------- 48 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVEF-------NDK----GDIDTPGEY--------------------- 48 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccceeec-------cCc----cccCCchhh---------------------
Confidence 799999999999999999998764322 2222222 111 147999821
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 172 (223)
-+-+.|+..+.. ....+|.++++-.+.++++...- .+... ...|+|=
T Consensus 49 -------~~~~~~Y~aL~t-------------------t~~dadvi~~v~~and~~s~f~p-----~f~~~--~~k~vIg 95 (148)
T COG4917 49 -------FEHPRWYHALIT-------------------TLQDADVIIYVHAANDPESRFPP-----GFLDI--GVKKVIG 95 (148)
T ss_pred -------hhhhHHHHHHHH-------------------HhhccceeeeeecccCccccCCc-----ccccc--cccceEE
Confidence 111112111111 11235556666666665544331 11111 2456999
Q ss_pred eecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625 173 VGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
|++|+|++++ ...+..++|..+-|.. +|++|+.++.|++++++.|..
T Consensus 96 vVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 96 VVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred EEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 9999999863 3446777888888874 999999999999999999875
No 269
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.52 E-value=1.2e-13 Score=113.30 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=96.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcc---cccccccceeeeEEEEE---------------EEcC------------
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFATRSI---------------QVDQ------------ 57 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~------------ 57 (223)
..+.++|+++|.-..|||||+.+|++... .......++.+...... .++.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35679999999999999999999997432 11111111111100000 0100
Q ss_pred ----eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccc
Q psy15625 58 ----KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132 (223)
Q Consensus 58 ----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (223)
-...+.++|+||+..|..........+|++++|+|.... ...+..+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e----------------------------- 161 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE----------------------------- 161 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-----------------------------
Confidence 023678999999887765555566788888888888753 1111111
Q ss_pred cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecC
Q psy15625 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSAL 207 (223)
Q Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~ 207 (223)
.+..+... .-.|+++|+||+|+.+.... ..++++.+... .+.+++++||+
T Consensus 162 -----------------------hl~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~ 216 (460)
T PTZ00327 162 -----------------------HLAAVEIM--KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQ 216 (460)
T ss_pred -----------------------HHHHHHHc--CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCC
Confidence 01111111 12468999999998642111 11233333322 35789999999
Q ss_pred CCCCHHHHHHHHHh
Q psy15625 208 DSTNVETAFQNILT 221 (223)
Q Consensus 208 ~~~~i~~~~~~i~~ 221 (223)
+|.|++++++.|.+
T Consensus 217 ~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 217 LKYNIDVVLEYICT 230 (460)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999874
No 270
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.52 E-value=2e-13 Score=101.95 Aligned_cols=183 Identities=17% Similarity=0.148 Sum_probs=112.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-----cccchh-hhcC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-----RAITSA-YYRG 83 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~-~~~~ 83 (223)
+.+.|+|.|+||+|||||+++|...... .+..+-+.-+|....... ...+.. ....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~------------------~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d 89 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRE------------------RGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRD 89 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHH------------------TT--EEEEEE-GGGGCC---SS--GGGCHHHHTS
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhh------------------cCCceEEEEECCCCCCCCCcccccHHHhcCcCCC
Confidence 5689999999999999999999765421 122334455564422111 112222 1223
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhc----CCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHA----DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
.. +|+.++....+...+.....+....+ -+.+.++.++..+..-.....+|.+++++-+..+...+.++..+-+
T Consensus 90 ~~--vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE 167 (266)
T PF03308_consen 90 PG--VFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIME 167 (266)
T ss_dssp TT--EEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH
T ss_pred CC--EEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhh
Confidence 33 44566666666666655444444433 3444456677777777888999999999999999999988887777
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+.+ ++|+||+|.+..+. ...+.+..... +..+++.+||.++.|++++++.|.+
T Consensus 168 iaD--------i~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 168 IAD--------IFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp H-S--------EEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred hcc--------EEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 755 89999999765222 22333333321 1357999999999999999998865
No 271
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=6.8e-13 Score=105.82 Aligned_cols=157 Identities=21% Similarity=0.252 Sum_probs=110.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcc---------------cccccccceeeeEEEEEEE---cCeEEEEEEEeCCC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---------------NLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAG 69 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G 69 (223)
.+...+..++-.-.=|||||..|+....- .......+++-.....+.+ ++..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34556788899999999999999976321 1122234444444444433 45778999999999
Q ss_pred CccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc
Q psy15625 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT 149 (223)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 149 (223)
|.+|..-....+..|.+.++++|.+-.-..+.+...+.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Yl------------------------------------------ 123 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL------------------------------------------ 123 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHH------------------------------------------
Confidence 99998877777888888888888877666666653322
Q ss_pred hhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHH-HHHHHcCCe---EEEeecCCCCCHHHHHHHHHhh
Q psy15625 150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK-TFAERNNLS---FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+. .+.-++-|+||+||+. ...+..+ +.....|++ .+.||||+|.|++++++.|++.
T Consensus 124 ---------Ale----~~LeIiPViNKIDLP~---Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 124 ---------ALE----NNLEIIPVLNKIDLPA---ADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred ---------HHH----cCcEEEEeeecccCCC---CCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 222 2677889999999986 2333333 333345653 8999999999999999999863
No 272
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=2.6e-13 Score=113.43 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=64.8
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCc--ccc---c---------------ccccceeeeEEEEEEEcCeEEEEEEEe
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FNL---E---------------SKSTIGVEFATRSIQVDQKTIKAQIWD 66 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 66 (223)
+.....+|+++|.+++|||||+++|+... ... . .....+.++......+++....+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 33456799999999999999999986311 100 0 001223445555566677778999999
Q ss_pred CCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 67 TAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
|||+.++.......++.+|++++|+|..+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 999987776666678899999999998764
No 273
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.50 E-value=2e-14 Score=113.62 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccccc-
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERYRA- 75 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~- 75 (223)
++|+++|.||||||||+|+|++........|..+.++....+.+.+.. ..+.+.|+||......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999988655555666666666666555432 2589999999543221
Q ss_pred ------cchhhhcCCcEEEEEEeCCC
Q psy15625 76 ------ITSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 76 ------~~~~~~~~~~~~i~v~d~~~ 95 (223)
.....++.+|++++|+|.+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 11224789999999999863
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.48 E-value=1.4e-12 Score=98.78 Aligned_cols=185 Identities=18% Similarity=0.136 Sum_probs=121.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch----hhhcCCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS----AYYRGAV 85 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~----~~~~~~~ 85 (223)
+...|+|+|.||+|||||+.+|...... .+..+-+.-+|.......+++.. +--...+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~------------------~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~ 111 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRE------------------RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVD 111 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHH------------------CCcEEEEEEECCCCCCCCccccccHhhHHhhccC
Confidence 3468999999999999999999765421 22334455566443222222222 2222234
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CceeE---EEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHAD-QNIVI---MLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
--+|+.++...-+...+....++....++ ...+. +.++..+........+|.+++++-+..+...+.+++.+-++.
T Consensus 112 ~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia 191 (323)
T COG1703 112 PGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA 191 (323)
T ss_pred CCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh
Confidence 45677788777777666555544444443 23444 445555666678889999999999999999999888887777
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHH-------HHc--CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-------ERN--NLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+ ++|+||.|..+.+ ....+..... ... ..+++.+||.+++|++++++.+.+
T Consensus 192 D--------i~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 192 D--------IIVINKADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred h--------eeeEeccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 6 8999999975421 1111111111 112 346999999999999999998865
No 275
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.47 E-value=1.7e-14 Score=110.61 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=60.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccccc---
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERYRA--- 75 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~--- 75 (223)
|+++|.||||||||+|+|++........+..+.+.....+.+.+.+ ..+.++|+||.....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999998866666666666666666665432 2589999999543221
Q ss_pred -c---chhhhcCCcEEEEEEeCCC
Q psy15625 76 -I---TSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 76 -~---~~~~~~~~~~~i~v~d~~~ 95 (223)
+ ....++.+|++++|+|.++
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 1 1223678999999999863
No 276
>PRK00007 elongation factor G; Reviewed
Probab=99.47 E-value=7e-13 Score=114.80 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=57.1
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccc--c---cc-----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--L---ES-----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.+...+|+++|.+|+|||||+++|+...-. . .. ....+++.......+.+....+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 345679999999999999999999741110 0 00 0122334434334444456689999999987
Q ss_pred cccccchhhhcCCcEEEEEEeCCCc
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
++.......++.+|++++|+|....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g 111 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGG 111 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCC
Confidence 6655445556667777777775544
No 277
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.47 E-value=8.5e-13 Score=94.08 Aligned_cols=179 Identities=14% Similarity=0.070 Sum_probs=105.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEE--EcC-eEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ--VDQ-KTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++|.|.|++|||||+|+.+++...........++.+..+..-. +.. ...++.-..|+. +||
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~-------------~CH-- 77 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGK-------------GCH-- 77 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCC-------------ccC--
Confidence 48999999999999999999988765443323333333221100 000 112222233321 111
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCc-cccccccc-cc-eeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS-LLRRYYRG-AV-GALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
.+.. ....-++++....+. .+++.+++.+ +...+... .+ ..++++|+..+..... +....+.
T Consensus 78 --------~da~-m~~~ai~~l~~~~~~-~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i~--- 142 (202)
T COG0378 78 --------LDAS-MNLEAIEELVLDFPD-LDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGIF--- 142 (202)
T ss_pred --------CcHH-HHHHHHHHHhhcCCc-CCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcc--cCCCcee---
Confidence 1111 112223333333332 4555544444 66665543 33 7889999998854433 2111111
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..-++|+||.|+.+.-..+.+...+-+++. +.+++++|+++|+|++++++++...
T Consensus 143 ---~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 143 ---KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred ---EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 134899999999987777667766666654 5789999999999999999998653
No 278
>KOG0090|consensus
Probab=99.47 E-value=2.3e-13 Score=97.76 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc---CCcEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR---GAVGAL 88 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~~i 88 (223)
-.|+++|+.++|||+|+-.|..+.+..... .+......+.++.. ...++|.||+.+.+.....++. .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 469999999999999999999886543331 12333334434333 3799999999888777776666 678888
Q ss_pred EEEeCCC
Q psy15625 89 LVYDIAK 95 (223)
Q Consensus 89 ~v~d~~~ 95 (223)
+|+|...
T Consensus 114 FVVDSa~ 120 (238)
T KOG0090|consen 114 FVVDSAT 120 (238)
T ss_pred EEEeccc
Confidence 8888764
No 279
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.5e-13 Score=104.93 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=68.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc---------------c------------ccccceeeeEEEEEEEcCe
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL---------------E------------SKSTIGVEFATRSIQVDQK 58 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------~------------~~~~~~~~~~~~~~~~~~~ 58 (223)
.++.++++++|+..+|||||+.+|+...- +. . ..+.-|.+++.....+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46789999999999999999999875210 00 0 0112355666666667777
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
.+.+.++|+||+.+|-.-...-...+|+.++|+|+.+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 778999999998888777777788899999999998764
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.46 E-value=1.7e-12 Score=100.28 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=43.9
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
++....++|+++|.+|+||||++|++++........ ...+....... ....+..+.++||||..+.
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~--~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS--RTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--EEECCeEEEEEECCCCCch
Confidence 445668999999999999999999999887533221 11122221222 2224568899999996543
No 281
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.45 E-value=2.8e-13 Score=110.92 Aligned_cols=208 Identities=21% Similarity=0.281 Sum_probs=126.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc--CeEEEEEEEeCCCCccccccchhhhcCC--
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD--QKTIKAQIWDTAGQERYRAITSAYYRGA-- 84 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~-- 84 (223)
...-.|+|+|..++|||||+.+|.+.+ ...++.+.+|....+.-+ .....+.+|-..|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345689999999999999999997654 233444555554443322 2334689999988777777777765543
Q ss_pred --cEEEEEEeCCCccc-HHHHHHHHHHHHHhcCCceeEEEeCC----Cccc---cccccccceeEEE-----eecccccc
Q psy15625 85 --VGALLVYDIAKHLT-YENVERWLRELRDHADQNIVIMLVGP----PSLL---RRYYRGAVGALLV-----YDIAKHLT 149 (223)
Q Consensus 85 --~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~-----~d~~~~~~ 149 (223)
-.+++|.|++.+.. ++.+..|+..++++.... .+..-.. ..++ ..|....+...-- ........
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L-~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKL-KSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 36788999999987 778899999999887642 1100000 0111 1111111111000 00000000
Q ss_pred hhhhHHHH--HHhhhccCCCceEEEeecccchhh----ccC-------CChHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q psy15625 150 YENVERWL--RELRDHADQNIVIMLVGNKSDLRH----LRA-------VPADEAKTFAERNNLSFIETSALDSTNVETAF 216 (223)
Q Consensus 150 ~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 216 (223)
.+.....+ ..+. ...++|++||++|+|... ... +....++.++.++|+..+++|++...+++.++
T Consensus 179 ~~~~~lpl~~g~l~--~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~ 256 (472)
T PF05783_consen 179 DESVLLPLGEGVLT--ENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLY 256 (472)
T ss_pred cccccCCCCCcccc--cccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHH
Confidence 00000000 0111 123789999999999742 111 22334788888999999999999999999999
Q ss_pred HHHHhh
Q psy15625 217 QNILTA 222 (223)
Q Consensus 217 ~~i~~~ 222 (223)
.+|.+.
T Consensus 257 ~yi~h~ 262 (472)
T PF05783_consen 257 KYILHR 262 (472)
T ss_pred HHHHHH
Confidence 887653
No 282
>PRK12740 elongation factor G; Reviewed
Probab=99.43 E-value=2.5e-12 Score=111.41 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=58.7
Q ss_pred EcCCCCcHHHHHHHHhhCccc--------ccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 17 IGDSGVGKSNLLSRFTRNEFN--------LES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 17 ~G~~~~GKStli~~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
+|++|+|||||+++|....-. ... ....+.+.......+.+....+.+|||||+.++......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999543211 000 0011223333333344456789999999998877777778
Q ss_pred hcCCcEEEEEEeCCCcccHHHH
Q psy15625 81 YRGAVGALLVYDIAKHLTYENV 102 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~ 102 (223)
++.+|++++++|.+........
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~ 102 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE 102 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH
Confidence 8999999999999886655444
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.42 E-value=3.3e-12 Score=97.16 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=44.9
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
.+.+..++|+|+|.+|||||||+|+|++........... .+...........+..+.+|||||..+.
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~-~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS-ETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-ceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 456678999999999999999999999987644432211 1111222222233457899999996543
No 284
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=5.7e-12 Score=111.55 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=51.4
Q ss_pred cHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe----------------EEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 23 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK----------------TIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 23 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+||||+.++.+..+...-...++-.+....+..+.. .-.+.+|||||+..+..+.......+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 399999999998775543333333333333333210 0127999999999998888778888999
Q ss_pred EEEEEeCCCc
Q psy15625 87 ALLVYDIAKH 96 (223)
Q Consensus 87 ~i~v~d~~~~ 96 (223)
+++|+|.++.
T Consensus 553 vlLVVDa~~G 562 (1049)
T PRK14845 553 AVLVVDINEG 562 (1049)
T ss_pred EEEEEECccc
Confidence 9999998763
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.41 E-value=1.9e-11 Score=90.09 Aligned_cols=80 Identities=20% Similarity=0.104 Sum_probs=54.2
Q ss_pred cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHH--cCCeEEEeecCCCCCH
Q psy15625 135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER--NNLSFIETSALDSTNV 212 (223)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 212 (223)
++.++.++|+....+... .....+ ...-++++||+|+.+......+...+..+. .+.+++++||++|+|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 688999999987765322 111111 122389999999975322233444444443 4678999999999999
Q ss_pred HHHHHHHHhh
Q psy15625 213 ETAFQNILTA 222 (223)
Q Consensus 213 ~~~~~~i~~~ 222 (223)
+++|+++.+.
T Consensus 185 ~el~~~i~~~ 194 (199)
T TIGR00101 185 DTVIDWIEHY 194 (199)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.40 E-value=1.7e-11 Score=96.48 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=99.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc--chhhhc--CC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI--TSAYYR--GA 84 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~--~~ 84 (223)
...+.|+|+|+||+|||||++++........ .. +.+.-.|.........+ +...+. ..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g------~~------------v~vi~~Dp~s~~~~gallgd~~r~~~~~~ 115 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQG------HK------------VAVLAVDPSSTRTGGSILGDKTRMERLSR 115 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCC------Ce------------EEEEEeCCCccccchhhhchHhHHHhhcC
Confidence 3568999999999999999999865432111 11 11122222111100011 000011 22
Q ss_pred cEEEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCcccc---ccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 85 VGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR---RYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
+..+++...........+ ....+.+......+.+++++++.+... .....+|.++++.++..+......+... +
T Consensus 116 ~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi--~ 193 (332)
T PRK09435 116 HPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGI--M 193 (332)
T ss_pred CCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhh--h
Confidence 222344444433333322 222222223333455666666655533 3456899999997766555554433211 1
Q ss_pred hhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...-++|+||+|+.+.... ...+++..... +..+++.+||+++.|++++++.|.+.
T Consensus 194 ------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~ 258 (332)
T PRK09435 194 ------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH 258 (332)
T ss_pred ------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 2233899999998642211 11222222221 22579999999999999999998763
No 287
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.39 E-value=3.7e-11 Score=89.46 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=59.1
Q ss_pred ceeEEEeCCCc-cc--cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHH
Q psy15625 116 NIVIMLVGPPS-LL--RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192 (223)
Q Consensus 116 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 192 (223)
..+++++++.+ .. ..+....+..+.+.|+..+..... .... . ...|.++++||+|+.+.......+...
T Consensus 102 ~~d~IiIEt~G~l~~~~~~~~~~~~~i~Vvd~~~~d~~~~--~~~~---~---~~~a~iiv~NK~Dl~~~~~~~~~~~~~ 173 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEGDDKPL--KYPG---M---FKEADLIVINKADLAEAVGFDVEKMKA 173 (207)
T ss_pred CCCEEEEecCCCcCCCcccccccCeEEEEEecCcccchhh--hhHh---H---HhhCCEEEEEHHHccccchhhHHHHHH
Confidence 34566664444 11 112223444566777765543211 1111 1 246789999999996532222334444
Q ss_pred HHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 193 FAERN--NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 193 ~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...+. ..+++++||+++.|++++|+++.+.
T Consensus 174 ~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 174 DAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44443 3789999999999999999999764
No 288
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.39 E-value=2.1e-12 Score=112.24 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=62.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc---------------cccc-ccc--cceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE---------------FNLE-SKS--TIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
+...+|+++|..++|||||+++|+... +... ... ++........+.+++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 346799999999999999999997521 1000 001 2211222223345677889999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
.++.......++.+|++++|+|....
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCC
Confidence 88877777788899999999987664
No 289
>KOG1486|consensus
Probab=99.38 E-value=1.3e-10 Score=85.99 Aligned_cols=193 Identities=23% Similarity=0.204 Sum_probs=119.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-------cchhhhcCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-------ITSAYYRGA 84 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~ 84 (223)
-+|+++|-|.+|||||+..++.-........+.+.+.-+..+.+++. .+++.|.||..+..+ ......+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeecc
Confidence 68999999999999999999876655444455455555555555544 679999999654433 333457889
Q ss_pred cEEEEEEeCCCcccHH-HHHHHHHHHHH---hcCCceeEEEeCCCcc---------------ccc---cccccce-eEEE
Q psy15625 85 VGALLVYDIAKHLTYE-NVERWLRELRD---HADQNIVIMLVGPPSL---------------LRR---YYRGAVG-ALLV 141 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~-~~~~ 141 (223)
|.+++|.|.+..+... .++..++..-- ...+++-+-.-...+. ... .++-..+ +++-
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 9999999999876544 44544444322 1122222222111111 000 1111111 2222
Q ss_pred eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
-| .+.+ .++..+.. ....+|++.|-||+|. ++.+++.+++++++- +-+|+....|++.+++.|.+
T Consensus 221 eD----~t~D---dfIDvi~g-nr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe 285 (364)
T KOG1486|consen 221 ED----CTVD---DFIDVIEG-NRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWE 285 (364)
T ss_pred cC----CChH---HHHHHHhc-cceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHH
Confidence 22 2222 23333322 2346899999999995 688999999988886 55677778899988887764
No 290
>KOG1144|consensus
Probab=99.38 E-value=2.6e-12 Score=107.26 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=63.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc----------------CeEEEEEEEeCCCCcccc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD----------------QKTIKAQIWDTAGQERYR 74 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~ 74 (223)
+.-|||+|.-.+|||-|+..+.+..+.......++-.+....+... ..---+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999999877655544433322222222221 111247899999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCCc
Q psy15625 75 AITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
+++......||.+|+|+|+...
T Consensus 555 nlRsrgsslC~~aIlvvdImhG 576 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHG 576 (1064)
T ss_pred hhhhccccccceEEEEeehhcc
Confidence 9999999999999999999764
No 291
>KOG1707|consensus
Probab=99.37 E-value=1.9e-11 Score=99.86 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=115.9
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
...+-+.+.++|+.++|||.+++.+.+..+...+..+....+....+...+....+.+.|.+-. ....+...- ..||.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3445689999999999999999999998887755555555555666666676667788887754 222222222 78999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
++++||.+++.+++.+...++. .... .
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~----------------------------------------------------~~~~-~ 525 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNK----------------------------------------------------YFDL-Y 525 (625)
T ss_pred EEEecccCCchHHHHHHHHHHH----------------------------------------------------hhhc-c
Confidence 9999999999998887643221 1111 4
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhhC
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTAN 223 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~ 223 (223)
+.|+++|++|+|+.+..+...-+..+++.+++++ .+.+|.+.... .++|..|..+|
T Consensus 526 ~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 526 KIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred CCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhh
Confidence 7899999999999874433333448899999985 67778775434 88999888765
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.36 E-value=3.8e-13 Score=101.63 Aligned_cols=57 Identities=23% Similarity=0.136 Sum_probs=32.7
Q ss_pred CCceEEEeecccchhhcc------C------C-------ChHHHHHHHH---HcC-C-eEEEeecCCCCCHHHHHHHHHh
Q psy15625 166 QNIVIMLVGNKSDLRHLR------A------V-------PADEAKTFAE---RNN-L-SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~------~------~-------~~~~~~~~~~---~~~-~-~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.+.|.+.|+||+|+.+.. . . .....++++. ..+ . +++++|+.+++++++++..+-+
T Consensus 155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~ 234 (238)
T PF03029_consen 155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK 234 (238)
T ss_dssp HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence 479999999999996511 0 0 0011111111 112 3 6999999999999999998876
Q ss_pred h
Q psy15625 222 A 222 (223)
Q Consensus 222 ~ 222 (223)
+
T Consensus 235 a 235 (238)
T PF03029_consen 235 A 235 (238)
T ss_dssp H
T ss_pred H
Confidence 4
No 293
>PRK13768 GTPase; Provisional
Probab=99.36 E-value=7e-12 Score=95.93 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=53.0
Q ss_pred cceeEEEeecccccchhhhHHHH-HHhhhccCCCceEEEeecccchhhccCCChHHHHH---------------------
Q psy15625 135 AVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT--------------------- 192 (223)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------- 192 (223)
.+++++++|++...+..+..... ..+......++|+++|+||+|+.+..+. ++...
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~ 206 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGL 206 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHH
Confidence 66778888877665554432211 1111111237899999999998653221 11111
Q ss_pred -------HHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 193 -------FAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 193 -------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...+.+ .+++++|++++.|+++++++|.+.
T Consensus 207 ~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 207 LSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 112223 478999999999999999998764
No 294
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=2.8e-11 Score=90.35 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccccccc--ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch-----------
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS----------- 78 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~----------- 78 (223)
++|+|+|.+|+||||++|.+++........ ...+..........++ ..+.++||||..+......
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987754432 2222333333333444 5679999999543221110
Q ss_pred hhhcCCcEEEEEEeCC
Q psy15625 79 AYYRGAVGALLVYDIA 94 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~ 94 (223)
....+.|++++|+...
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 1134566677776665
No 295
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.32 E-value=1e-10 Score=89.87 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=39.9
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHH--cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAER--NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..+-++|+||+|+.+......+...+..++ .+.+++++|+++++|++++.+||.+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456699999999965222223334444433 3578999999999999999999875
No 296
>KOG0458|consensus
Probab=99.31 E-value=2.6e-11 Score=99.08 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=103.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc--------------------cc---------ccccccceeeeEEEEEEEcCeEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE--------------------FN---------LESKSTIGVEFATRSIQVDQKTI 60 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~ 60 (223)
..+..+++|.-.+|||||+.+++... .. ....+..|.+.+.....++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 46899999999999999999987511 00 01112335666677777777788
Q ss_pred EEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG 137 (223)
Q Consensus 61 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
.+.+.|.||+..|-+-...-...+|..++|+|++..+ .|+.-.+..+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh----------------------------- 306 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH----------------------------- 306 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-----------------------------
Confidence 9999999998888887777888899999999997643 12211111111
Q ss_pred eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHH-------HH-HHcC-----CeEEEe
Q psy15625 138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT-------FA-ERNN-----LSFIET 204 (223)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~-~~~~-----~~~~~~ 204 (223)
...++.+. -.-++|++||+|+.+ ++.+.++. |. +..| +.|++|
T Consensus 307 ----------------a~llr~Lg-----i~qlivaiNKmD~V~---Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPi 362 (603)
T KOG0458|consen 307 ----------------ALLLRSLG-----ISQLIVAINKMDLVS---WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPI 362 (603)
T ss_pred ----------------HHHHHHcC-----cceEEEEeecccccC---ccHHHHHHHHHHHHHHHHHhcCcccCCcceEec
Confidence 12233333 345789999999976 44443333 33 2233 469999
Q ss_pred ecCCCCCHHHH
Q psy15625 205 SALDSTNVETA 215 (223)
Q Consensus 205 Sa~~~~~i~~~ 215 (223)
|+.+|+|+-..
T Consensus 363 SGl~GeNL~k~ 373 (603)
T KOG0458|consen 363 SGLSGENLIKI 373 (603)
T ss_pred ccccCCccccc
Confidence 99999998643
No 297
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.29 E-value=7.6e-11 Score=94.13 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=105.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccc--cc----------c--cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN--LE----------S--KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
+.-+|+++-.-.=|||||+..|+.+.-. +. . ...-|+++-.+.-.+.+....++++|||||.+|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 4568999999999999999999875321 10 0 12235566666666778888999999999999998
Q ss_pred cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
-.+..+...|++++++|..... -++. +
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp---------------------------------------------------MPQT--r 110 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP---------------------------------------------------MPQT--R 110 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC---------------------------------------------------CCch--h
Confidence 8888888888888887776522 1111 0
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHH-------HcCCeEEEeecCCCC----------CHHHHHH
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAE-------RNNLSFIETSALDST----------NVETAFQ 217 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~ 217 (223)
+ -+......+.+-|+|+||+|.+..+.- -.++...+.. +..+++++.|++.|. ++..+|+
T Consensus 111 F--VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe 188 (603)
T COG1217 111 F--VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFE 188 (603)
T ss_pred h--hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHH
Confidence 0 011111236667889999998763321 1233333332 456789999999875 6778888
Q ss_pred HHHh
Q psy15625 218 NILT 221 (223)
Q Consensus 218 ~i~~ 221 (223)
.|++
T Consensus 189 ~I~~ 192 (603)
T COG1217 189 TILD 192 (603)
T ss_pred HHHH
Confidence 8875
No 298
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.29 E-value=2e-11 Score=83.18 Aligned_cols=114 Identities=32% Similarity=0.398 Sum_probs=75.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
+||+++|..|+|||+|+.++....+...+. ++.+ +..+...+.++.+.++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998777653332 2222 222334456778888888
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
|+....+++..+ |...+ ........|.
T Consensus 54 ~~~~~~~s~~~~--~~~~i---------------------------------------------------~~~~k~dl~~ 80 (124)
T smart00010 54 WRVDDRDSADNK--NVPEV---------------------------------------------------LVGNKSDLPI 80 (124)
T ss_pred EEccCHHHHHHH--hHHHH---------------------------------------------------HhcCCCCCcE
Confidence 888887776544 33222 2222335788
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
++++||.|+.....+..++. .+++++|++++.|+.
T Consensus 81 ~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 81 LVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 99999999855333333222 245677888888874
No 299
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.28 E-value=1.8e-11 Score=93.14 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=72.9
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT 149 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 149 (223)
+++..+.+.+++++|.+++|+|+.++. ++..+.+|+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~---------------------------------------- 63 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA---------------------------------------- 63 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH----------------------------------------
Confidence 456677778899999999999999877 788888554422
Q ss_pred hhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.. .++|+++|+||+|+.+.+....+..+.+ ...+.+++++||+++.|++++|+.+..
T Consensus 64 -----------~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 64 -----------EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -----------HH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 22 3689999999999965443333334433 357889999999999999999998753
No 300
>KOG0410|consensus
Probab=99.28 E-value=1.1e-11 Score=94.60 Aligned_cols=157 Identities=20% Similarity=0.143 Sum_probs=94.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
...-|.++|..|+|||||+++|+.....+...-+.+.++.......+... .+.+.||.|...--+...
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~L----------- 244 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQL----------- 244 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHH-----------
Confidence 34579999999999999999999888777777777788777766665544 778999999432221111
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
....+..++++ ..+|.++-+.|.+++...+.....+..+....-...|
T Consensus 245 ---------vaAF~ATLeeV-----------------------aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~p 292 (410)
T KOG0410|consen 245 ---------VAAFQATLEEV-----------------------AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEP 292 (410)
T ss_pred ---------HHHHHHHHHHH-----------------------hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHH
Confidence 11111122222 2245555555555554444433444444333222222
Q ss_pred ----EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625 170 ----IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 170 ----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
++=|=||+|+.+...- .+.++ .+.+||++|+|++++.+.+-
T Consensus 293 kl~~mieVdnkiD~e~~~~e--------~E~n~--~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 293 KLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHhHHHhhccccccccccCc--------cccCC--ccccccccCccHHHHHHHHH
Confidence 3445577776542111 11222 58899999999999988764
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.28 E-value=7.2e-11 Score=93.71 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=42.1
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccccccccc---ceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh----
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST---IGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY---- 80 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---- 80 (223)
.+..++|+|+|.+|+|||||+|+|.+-......... .+++..+..+..... -++.+||.||.....-....|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 456799999999999999999999874332222111 122222222222222 258999999964332222222
Q ss_pred -hcCCcEEEEEEe
Q psy15625 81 -YRGAVGALLVYD 92 (223)
Q Consensus 81 -~~~~~~~i~v~d 92 (223)
+..-|.++++.+
T Consensus 111 ~~~~yD~fiii~s 123 (376)
T PF05049_consen 111 KFYRYDFFIIISS 123 (376)
T ss_dssp TGGG-SEEEEEES
T ss_pred cccccCEEEEEeC
Confidence 445565555443
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.27 E-value=8e-11 Score=102.74 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------------ccccceeeeEE--EEEEEcCeEEEEEEEeCCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFAT--RSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~ 70 (223)
+...+|+++|+.++|||||+.+|+...-... ....+++.... ..+..++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3456899999999999999999975321100 00111111111 12223445678999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
.++.......++.+|++++|+|.....
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~ 124 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGV 124 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCC
Confidence 888777777788888888888876543
No 303
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=7.7e-11 Score=88.75 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=46.8
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
..+...|+++|.+|+|||||++.+.+...........+ .+ ++ .......+.++|+||.. ..+ ....+.+|.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 34567899999999999999999987532211111111 11 11 11244577899999843 111 1224556666
Q ss_pred EEEEeCCC
Q psy15625 88 LLVYDIAK 95 (223)
Q Consensus 88 i~v~d~~~ 95 (223)
++++|...
T Consensus 108 llviDa~~ 115 (225)
T cd01882 108 LLLIDASF 115 (225)
T ss_pred EEEEecCc
Confidence 66666544
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.26 E-value=1.4e-11 Score=108.73 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=61.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccc----------------ccccccceeeeEEEEEEE--------------cC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN----------------LESKSTIGVEFATRSIQV--------------DQ 57 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~ 57 (223)
.+...+|+|+|+.++|||||+++|+...-. ......+++......+.. ..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445679999999999999999999854311 000011111111111212 12
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 98 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 98 (223)
....++++||||+.+|.......++.+|++++|+|....-.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~ 136 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc
Confidence 35678999999999988877888899999999999876544
No 305
>PTZ00416 elongation factor 2; Provisional
Probab=99.26 E-value=3.3e-11 Score=106.26 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=58.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------------ccccceeeeEEEEEEEc--------CeEEEEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVD--------QKTIKAQI 64 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~ 64 (223)
+...+|+++|+.++|||||+++|+...-... ....+++......+... ++...+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4457999999999999999999986321100 00111111111122222 22567899
Q ss_pred EeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 98 (223)
Q Consensus 65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 98 (223)
+||||+.++.......++.+|++++|+|....-.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~ 130 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC 130 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence 9999998877767777888888888888766443
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.25 E-value=1.8e-10 Score=90.46 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=58.6
Q ss_pred CceeEEEeCCCccccc---cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCCh--H-
Q psy15625 115 QNIVIMLVGPPSLLRR---YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--D- 188 (223)
Q Consensus 115 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~- 188 (223)
...+++++++++.... ....+|.++++.....+ ..+......+ .++|.++++||+|+.+...... .
T Consensus 125 ~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~~ 196 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARLM 196 (300)
T ss_pred CCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHHH
Confidence 4667777776655433 34566777777544333 3322222222 2578899999999865221100 0
Q ss_pred ---HHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 189 ---EAKTFAER---NNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 189 ---~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
....+... ++.+++++||+++.|++++++++.+
T Consensus 197 ~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 197 LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 00111111 2235899999999999999999875
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.24 E-value=1.8e-09 Score=83.66 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=81.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccc----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
.++|+|+|.+|+|||||+|.|++....... ..+..+......+.-++..+.+.++||||..+.-+.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n---- 79 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN---- 79 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH----
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc----
Confidence 589999999999999999999987654442 122223333334444677889999999995432211
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHH----HHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhHH
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLR----ELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVER 155 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~ 155 (223)
...+..+..+++ ........ .......-.+.++.+|+++++.+ ....++.
T Consensus 80 ---------------~~~~~~I~~yI~~qf~~~l~eE~~---------~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~- 134 (281)
T PF00735_consen 80 ---------------SDCWEPIVDYIESQFDSYLEEESK---------INRPRIEDTRVHACLYFIPPTGHGLKPLDIE- 134 (281)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHTS---------SS-TTS----EEEEEEEE-TTSSSS-HHHHH-
T ss_pred ---------------hhhhHHHHHHHHHHHHHHHHHhhc---------ccccCcCCCCcceEEEEEcCCCccchHHHHH-
Confidence 112222222221 11111110 01112234689999999998754 4555543
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHHcCCeEEEe
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAERNNLSFIET 204 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 204 (223)
.+..+.. ..++|-|+.|+|.-...+ .....+..-...++++++..
T Consensus 135 ~mk~Ls~----~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 135 FMKRLSK----RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHTT----TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHhcc----cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 3334433 578899999999743111 11223344444567665553
No 308
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.4e-10 Score=89.62 Aligned_cols=152 Identities=25% Similarity=0.260 Sum_probs=100.8
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccccc-------------------------------ccccceeeeEEEEEEEc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-------------------------------SKSTIGVEFATRSIQVD 56 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 56 (223)
+...+|.+-+|.-.=||||||-+|+....... .....|++++...-.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45579999999999999999999986321100 11234566666655565
Q ss_pred CeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625 57 QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV 136 (223)
Q Consensus 57 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (223)
-...+|.+-||||++.|....-.-...||+.++++|.-.. - +++-++|
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G----v----l~QTrRH------------------------ 130 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG----V----LEQTRRH------------------------ 130 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh----h----HHHhHHH------------------------
Confidence 5666899999999998887766667778888888886221 1 1111111
Q ss_pred eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC----ChHHHHHHHHHcCC---eEEEeecCCC
Q psy15625 137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV----PADEAKTFAERNNL---SFIETSALDS 209 (223)
Q Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~---~~~~~Sa~~~ 209 (223)
.++..+-. =.-+++++||+||.+..+- ...+...|+.+.++ .++++||+.|
T Consensus 131 ------------------s~I~sLLG----IrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~G 188 (431)
T COG2895 131 ------------------SFIASLLG----IRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLG 188 (431)
T ss_pred ------------------HHHHHHhC----CcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccC
Confidence 11111111 1357888999999874332 23456677777776 4999999999
Q ss_pred CCHH
Q psy15625 210 TNVE 213 (223)
Q Consensus 210 ~~i~ 213 (223)
.|+.
T Consensus 189 DNV~ 192 (431)
T COG2895 189 DNVV 192 (431)
T ss_pred Cccc
Confidence 9885
No 309
>KOG1487|consensus
Probab=99.20 E-value=2.1e-10 Score=85.20 Aligned_cols=192 Identities=21% Similarity=0.199 Sum_probs=120.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-------cccchhhhcCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-------RAITSAYYRGA 84 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~ 84 (223)
-+|.++|-|.+||||++..|.+...+.......+.+.-+....+ ..-.+++.|.||..+. +.+.....+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 48999999999999999999987655444343333333333333 3447899999995432 23444557889
Q ss_pred cEEEEEEeCCCcccHHHH-HHHHHHHHH---hcCCc--------eeEEEeCC-------CccccccccccceeEEEeecc
Q psy15625 85 VGALLVYDIAKHLTYENV-ERWLRELRD---HADQN--------IVIMLVGP-------PSLLRRYYRGAVGALLVYDIA 145 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~-~~~~~~~~~---~~~~~--------~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~ 145 (223)
+.+++|.|+..+-+-..+ +..++.+-- ..+++ ..+-+.++ .+...++.-++..+.+-+|++
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 999999999998775544 333332211 11111 12222221 122445666777888888877
Q ss_pred cccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHh
Q psy15625 146 KHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.... +..++.. ...+|.+++.||+|... .++..-. ..+ ..+++||.+++|++++++.+.+
T Consensus 218 ~DdL-------IdvVegn-r~yVp~iyvLNkIdsIS-----iEELdii---~~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 218 ADDL-------IDVVEGN-RIYVPCIYVLNKIDSIS-----IEELDII---YTIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred hhhh-------hhhhccC-ceeeeeeeeecccceee-----eecccee---eeccceeecccccccchHHHHHHHhh
Confidence 6633 3333332 23689999999999643 3333222 222 3689999999999999988754
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.18 E-value=3.5e-10 Score=90.01 Aligned_cols=185 Identities=13% Similarity=0.155 Sum_probs=98.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC----cccc----------cccccce---eeeEEEE-----EE---EcCeEEEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN----EFNL----------ESKSTIG---VEFATRS-----IQ---VDQKTIKAQI 64 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~----~~~~----------~~~~~~~---~~~~~~~-----~~---~~~~~~~~~~ 64 (223)
..+-|+|+|+.++|||||+|++.+. .... -.....| +++.++. +. .++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3578999999999999999999998 3220 1112333 3333333 11 2345568999
Q ss_pred EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEe-e
Q psy15625 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVY-D 143 (223)
Q Consensus 65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d 143 (223)
+||+|...-+.+-........ .+-.-+...+-.|..... =+.-.....+++..+++. |
T Consensus 96 IDcvG~~v~GalG~~r~~k~R-mV~TPW~d~~IPF~~AAe--------------------iGT~kVI~dhstIgivVtTD 154 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPR-MVSTPWYDYEIPFEEAAE--------------------IGTRKVIQEHSTIGVVVTTD 154 (492)
T ss_pred EECCCcccCCCccceeccccc-cccCCcccccCchhhhhh--------------------hhHHHHHHhcCcEEEEEEcC
Confidence 999995432221111100000 000000001111222211 011111223677777777 7
Q ss_pred cccc-----cchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeec--CCCCCHHHHH
Q psy15625 144 IAKH-----LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSA--LDSTNVETAF 216 (223)
Q Consensus 144 ~~~~-----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~~ 216 (223)
.+-. .....-..++..+.. .++|+++++||+|.... -..+....+..+++++++.+|+ .+...+..++
T Consensus 155 gsi~dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il 229 (492)
T TIGR02836 155 GTITDIPREDYVEAEERVIEELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVL 229 (492)
T ss_pred CCccccccccchHHHHHHHHHHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHH
Confidence 6522 112222345555544 58999999999994321 1344455666677888777665 4456777777
Q ss_pred HHHH
Q psy15625 217 QNIL 220 (223)
Q Consensus 217 ~~i~ 220 (223)
+.+.
T Consensus 230 ~~vL 233 (492)
T TIGR02836 230 EEVL 233 (492)
T ss_pred HHHH
Confidence 7654
No 311
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.18 E-value=1.2e-09 Score=86.27 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=35.7
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
..+.+.+||++|+...+..|..++.+++++++|+|+++.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence 456789999999999999999999999999999999975
No 312
>KOG1491|consensus
Probab=99.10 E-value=7.3e-11 Score=90.75 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=68.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC---------------eEEEEEEEeCCCCcc--
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ---------------KTIKAQIWDTAGQER-- 72 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~-- 72 (223)
..++++++|.||+|||||+|+|++....+...|..++++....+.+.. ....++++|++|...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 457999999999999999999999999988889888888777666532 234689999998432
Q ss_pred --c---cccchhhhcCCcEEEEEEeCCCc
Q psy15625 73 --Y---RAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 73 --~---~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
. ++-....++.+|+++.|+++...
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 2 33334458899999999988764
No 313
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.6e-09 Score=86.07 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=65.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC----------------ccccccc----ccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN----------------EFNLESK----STIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
..-..+|+-.|.+|||||-.+|+-- ......+ ..-|+...+..+++++....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 3456899999999999999998641 0000010 1235666677778888888999999999
Q ss_pred CccccccchhhhcCCcEEEEEEeCCCcccHHHH
Q psy15625 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENV 102 (223)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 102 (223)
+.+|..-.-.-+..+|.+++|+|....-.-+.+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~ 123 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL 123 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH
Confidence 998876555556777888888887765554444
No 314
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.07 E-value=3.8e-09 Score=79.70 Aligned_cols=45 Identities=20% Similarity=0.075 Sum_probs=30.7
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhh
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 181 (223)
..+.++++.|+....+..+.....+.+. +.+.|+++|+||+|..+
T Consensus 162 ~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 162 EECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITKLDLMD 206 (240)
T ss_pred ccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEECCCCCC
Confidence 3457888888877666555434443333 34789999999999865
No 315
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.07 E-value=5.4e-09 Score=83.37 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
...+.+||++|+...+..|..++.+++++++|+|+++.+
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d 221 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYD 221 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccc
Confidence 346899999999999999999999999999999999743
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.5e-09 Score=90.13 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=69.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccc-----cc-----------cccceeeeEEEEEEEcCe-EEEEEEEeCCCC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----ES-----------KSTIGVEFATRSIQVDQK-TIKAQIWDTAGQ 70 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~ 70 (223)
.....+|+++|+-.+|||||..+++...-.. .. ...-++++......+.+. ...++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567889999999999999999987521110 00 012244555555555555 489999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
.+|..-....++-+|++++|+|....-..+.-.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt 119 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET 119 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH
Confidence 999998888899999999999887755444333
No 317
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=7.6e-09 Score=74.39 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=33.7
Q ss_pred cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeeccc
Q psy15625 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKS 177 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 177 (223)
.++...+|.+++|.++....+..+...+....... ...+++|.||+
T Consensus 123 ~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 123 EEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp HHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred HHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 35668999999999999988877766666555544 33488888985
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.02 E-value=8e-09 Score=86.90 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=41.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
+..++|+|+|.+|+||||++|+|++......... ..++.........+ +..+.++||||..+
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~d 178 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKS 178 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCc
Confidence 4568999999999999999999999865433322 22222222222222 35789999999654
No 319
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.02 E-value=1.2e-09 Score=86.79 Aligned_cols=84 Identities=17% Similarity=0.029 Sum_probs=64.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccc--
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERY-- 73 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~-- 73 (223)
++++++|.||+|||||+++|++... ...+.|..+.++....+.+.+.+ ..+.+.|+||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999987 65555666667777766665532 36899999995432
Q ss_pred -----cccchhhhcCCcEEEEEEeCCC
Q psy15625 74 -----RAITSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 74 -----~~~~~~~~~~~~~~i~v~d~~~ 95 (223)
+......++.+|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2234456899999999999974
No 320
>KOG0461|consensus
Probab=98.98 E-value=1.2e-08 Score=79.03 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=51.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcc-------cccccccceeeeEEEEEEE-------cCeEEEEEEEeCCCCccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEF-------NLESKSTIGVEFATRSIQV-------DQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~G~~~~~~ 75 (223)
-.++++++|.-.+|||||.++|..-.. +......++.+..-..+.+ .+....+.++|+||+. +
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---s 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---S 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---H
Confidence 358999999999999999999975221 1112233333433333332 2344678999999954 4
Q ss_pred cchhhhcCC---cEEEEEEeCCCc
Q psy15625 76 ITSAYYRGA---VGALLVYDIAKH 96 (223)
Q Consensus 76 ~~~~~~~~~---~~~i~v~d~~~~ 96 (223)
+.+..+.++ |..++|+|+...
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcc
Confidence 444444443 455667776653
No 321
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=4.7e-09 Score=74.71 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=38.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
...+|+++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999987654333 3333443333333322 368999999
No 322
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.91 E-value=3.4e-09 Score=74.04 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=39.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
+++++|.+|+|||||+|++.+....... ...+.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988765333 2333444444454543 5699999994
No 323
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=8.3e-09 Score=82.32 Aligned_cols=150 Identities=20% Similarity=0.115 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccc---ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
-|+-.|.---|||||++++++.... +......+++..... .+.....+.++|.||+.++-.-......+.|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y--~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY--RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe--ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 3677888899999999999886432 233344444443333 43333478999999988776666666677888888
Q ss_pred EEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 90 VYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 90 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
|++..+. .+.+.+. .+..+.
T Consensus 80 vV~~deGl~~qtgEhL~----------------------------------------------------iLdllg----- 102 (447)
T COG3276 80 VVAADEGLMAQTGEHLL----------------------------------------------------ILDLLG----- 102 (447)
T ss_pred EEeCccCcchhhHHHHH----------------------------------------------------HHHhcC-----
Confidence 8888543 2333322 112222
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHH---HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE---RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..-.++|+||+|+.++.. ..+..+++.. -...+++.+|+++++|++++.+.|..+
T Consensus 103 i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L 160 (447)
T COG3276 103 IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDL 160 (447)
T ss_pred CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHh
Confidence 233489999999875321 1122222222 234678999999999999999999875
No 324
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.89 E-value=1e-07 Score=74.69 Aligned_cols=160 Identities=15% Similarity=0.238 Sum_probs=90.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccccc----------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
.++|+++|+.|.|||||+|.|++...... ..++..+......+.-++..+.+.++||||..++-.
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id----- 97 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID----- 97 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc-----
Confidence 58999999999999999999998743222 123333444444444567788899999999554321
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHH----HHHhcCCceeEEEeCCCccc-cccccccceeEEEeeccc-ccchhhhH
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRE----LRDHADQNIVIMLVGPPSLL-RRYYRGAVGALLVYDIAK-HLTYENVE 154 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~~ 154 (223)
+...++.+..+++. ....... ..-. .-.-.+.++.+|.+.++. +-...+++
T Consensus 98 --------------Ns~~we~I~~yI~~q~d~yl~~E~~---------~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe 154 (373)
T COG5019 98 --------------NSKCWEPIVDYIDDQFDQYLDEEQK---------IKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE 154 (373)
T ss_pred --------------ccccHHHHHHHHHHHHHHHHHHhhc---------cccccccccCceEEEEEEecCCCCCCCHHHHH
Confidence 12223333322221 1111110 0001 112257899999998764 45555543
Q ss_pred HHHHHhhhccCCCceEEEeecccchhh--ccCCChHHHHHHHHHcCCeEEE
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRH--LRAVPADEAKTFAERNNLSFIE 203 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (223)
. +..+.. .+-+|=|+.|+|.-. +.....+.+++...++++++|.
T Consensus 155 ~-Mk~ls~----~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 155 A-MKRLSK----RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred H-HHHHhc----ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 3 223332 445677788999642 1122334455555667777663
No 325
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.89 E-value=4.8e-09 Score=75.54 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=39.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
.++++++|.||+|||||+|+|.+....... +..+++.....+..+ ..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence 479999999999999999999987654333 333444443343333 2578999999
No 326
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.3e-08 Score=75.88 Aligned_cols=86 Identities=24% Similarity=0.228 Sum_probs=54.2
Q ss_pred cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCC
Q psy15625 135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDS 209 (223)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~ 209 (223)
.|+.+++++++.+......+..+..+.... -+-++++=||+|+...+. -..+++++|.+- .+.+++++||..+
T Consensus 110 MDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~ 187 (415)
T COG5257 110 MDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHK 187 (415)
T ss_pred hcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhc
Confidence 455555555555443333333333343332 246788999999964221 133455555542 3678999999999
Q ss_pred CCHHHHHHHHHhh
Q psy15625 210 TNVETAFQNILTA 222 (223)
Q Consensus 210 ~~i~~~~~~i~~~ 222 (223)
.|++.+++.|...
T Consensus 188 ~NIDal~e~i~~~ 200 (415)
T COG5257 188 ANIDALIEAIEKY 200 (415)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999998753
No 327
>KOG0468|consensus
Probab=98.82 E-value=3.8e-08 Score=82.12 Aligned_cols=91 Identities=23% Similarity=0.280 Sum_probs=65.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-----------------cceeeeEEEEEE---EcCeEEEEEEEeCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-----------------TIGVEFATRSIQ---VDQKTIKAQIWDTA 68 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~D~~ 68 (223)
+...+++++|+-..|||+|+..|.....+..+.. ..++...+.++- ..++.+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3457899999999999999999988766444211 111111122222 24567779999999
Q ss_pred CCccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTY 99 (223)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 99 (223)
|+..+.+-....++.+|++++++|+...-.+
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml 236 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML 236 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCcee
Confidence 9998888888888888999988888765543
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.6e-08 Score=74.81 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=62.0
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCccc--------------ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
...+.++|+.+|.-+-|||||..+++..... ......-++++.+..+.+.........+|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 3456799999999999999999998753210 11123446677777777776777889999999877
Q ss_pred ccccchhhhcCCcEEEEEEeCCC
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~ 95 (223)
|-.....-..+.|+.|+|+...+
T Consensus 88 YvKNMItgAaqmDgAILVVsA~d 110 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCC
Confidence 75544444455566666666555
No 329
>KOG2655|consensus
Probab=98.81 E-value=1e-07 Score=75.04 Aligned_cols=166 Identities=15% Similarity=0.203 Sum_probs=87.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccccc---------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY 81 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 81 (223)
.++++++|..|.|||||+|.|+...+... ...+.........+.-++..+.++++||||..+.-+...
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~--- 97 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN--- 97 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc---
Confidence 48999999999999999999988744322 112333333333444467778899999999554322111
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhHHHHHHh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVERWLREL 160 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~ 160 (223)
+|+. -...+....++....... ..-....-.+.++.+|.+.+..+ ....++.. +..+
T Consensus 98 --------~w~p----i~~yi~~q~~~yl~~E~~---------~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~-Mk~l 155 (366)
T KOG2655|consen 98 --------CWRP----IVNYIDSQFDQYLDEESR---------LNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF-MKKL 155 (366)
T ss_pred --------cchh----hhHHHHHHHHHHHhhhcc---------CCcccccCCceEEEEEEeCCCCCCCcHhhHHH-HHHH
Confidence 0000 011121111111111000 00111222488999999987755 55555422 2222
Q ss_pred hhccCCCceEEEeecccchhhcc--CCChHHHHHHHHHcCCeEEEee
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERNNLSFIETS 205 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~S 205 (223)
.. ++.+|=|+.|+|.-... ......+.+.....+++++...
T Consensus 156 ~~----~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp 198 (366)
T KOG2655|consen 156 SK----KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFP 198 (366)
T ss_pred hc----cccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCC
Confidence 22 56677788899964311 1122334444455566655433
No 330
>KOG3886|consensus
Probab=98.81 E-value=8.7e-09 Score=75.45 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-----cccchhhhcCC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-----RAITSAYYRGA 84 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~~~~ 84 (223)
.-||+++|.+|+||||+-..+..+...-. .-+..++++....+.+-| ...+.+||.+|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999998777664432211 123333444444443332 357899999998742 23444568889
Q ss_pred cEEEEEEeCCCcccHHHHH
Q psy15625 85 VGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~ 103 (223)
+++++|||++..+-...+.
T Consensus 83 ~vli~vFDves~e~~~D~~ 101 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFH 101 (295)
T ss_pred eeeeeeeeccchhhhhhHH
Confidence 9999999988765444444
No 331
>KOG0082|consensus
Probab=98.80 E-value=3.1e-08 Score=77.90 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=37.8
Q ss_pred EcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625 55 VDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 98 (223)
Q Consensus 55 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 98 (223)
+.-+..++.++|++||...+..|.-++.+++++++|.++++.+.
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq 233 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ 233 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh
Confidence 34445689999999999999999999999999999999987543
No 332
>KOG2486|consensus
Probab=98.78 E-value=1.7e-08 Score=75.99 Aligned_cols=58 Identities=24% Similarity=0.190 Sum_probs=39.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
+...+++++|.+|+|||||+|-+...+....... ..+.+. .++.-..+-++.+.|.||
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG 192 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPG 192 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCC
Confidence 4458999999999999999999988665433322 333222 222222334678999999
No 333
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.78 E-value=2.1e-08 Score=72.36 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=41.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
+..++++++|.+|+|||||+|++.+..+.... ...+.+.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34579999999999999999999987764332 333344444444443 35789999994
No 334
>KOG1954|consensus
Probab=98.77 E-value=1.2e-07 Score=74.18 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=34.2
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEE
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRS 52 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~ 52 (223)
+...+....|+++|+-..||||+++.|+.+.++.... +..+++++...
T Consensus 52 d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~v 100 (532)
T KOG1954|consen 52 DPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAV 100 (532)
T ss_pred CcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEE
Confidence 3445566789999999999999999999998874432 33334444443
No 335
>KOG1547|consensus
Probab=98.77 E-value=2.6e-07 Score=68.26 Aligned_cols=162 Identities=18% Similarity=0.226 Sum_probs=85.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccccccc-------ccceeeeEEEEEEE--cCeEEEEEEEeCCCCccccccchhhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGVEFATRSIQV--DQKTIKAQIWDTAGQERYRAITSAYY 81 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~ 81 (223)
.++|+|+|.+|.|||||+|.+..+.+..... -+.++++...+..+ ++...++.++||||..++-+.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN----- 120 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN----- 120 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc-----
Confidence 5899999999999999999998765543211 11123333333333 566778899999995443211
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHH---------HHHHHhcCCceeEEEeCCCccccccccccceeEEEeeccccc-chh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWL---------RELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHL-TYE 151 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 151 (223)
..-++-+.++. +++....... ..-.+.++.++.+.++.+. ..-
T Consensus 121 --------------~ncWePI~kyIneQye~yL~eElni~R~kr-------------ipDTRVHcclyFi~ptGhsLrpl 173 (336)
T KOG1547|consen 121 --------------DNCWEPIEKYINEQYEQYLREELNIAREKR-------------IPDTRVHCCLYFIPPTGHSLRPL 173 (336)
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHHhHHhhhc-------------CCCceEEEEEEEeCCCCCccCcc
Confidence 11122221111 1111111111 1224677888888776553 334
Q ss_pred hhHHHHHHhhhccCCCceEEEeecccchh--hccCCChHHHHHHHHHcCCeEEEeecCCC
Q psy15625 152 NVERWLRELRDHADQNIVIMLVGNKSDLR--HLRAVPADEAKTFAERNNLSFIETSALDS 209 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 209 (223)
+++...+ +.. -.-++-|+.|+|-. +++....+.++.-...+++.+++--+.+.
T Consensus 174 Dieflkr-Lt~----vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 174 DIEFLKR-LTE----VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred cHHHHHH-Hhh----hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 4332222 222 23456667799953 22333344455555567777776544443
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.76 E-value=3.1e-08 Score=77.40 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=42.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
...++++++|.||||||||+|+|.+....... +..+.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 34689999999999999999999987753332 3334444444444433 47899999953
No 337
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=2.9e-08 Score=77.18 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=41.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
..++++++|.||+|||||+|+|.+....... ...+.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999987654333 2334444444444432 4689999996
No 338
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=2.2e-08 Score=73.58 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=38.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccc-------cccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
..+++++|.+|+|||||+|+|.+..... ......+++.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3579999999999999999999864321 1122234555555554543 469999999
No 339
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=5.7e-08 Score=71.38 Aligned_cols=87 Identities=24% Similarity=0.108 Sum_probs=58.6
Q ss_pred cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-----HHcCC---e
Q psy15625 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNL---S 200 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~---~ 200 (223)
..+...+|++++++|+++...... ..+... ..++|+++|+||+|+.+. ....++...+. ...+. +
T Consensus 29 ~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 29 SSISPKKALVVHVVDIFDFPGSLI-----PRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred HhcccCCcEEEEEEECccCCCccc-----hhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCCCccc
Confidence 345678999999999987643221 222111 236899999999998642 22333344333 22333 5
Q ss_pred EEEeecCCCCCHHHHHHHHHhh
Q psy15625 201 FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 201 ~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++++||++++|++++++.|.+.
T Consensus 102 i~~vSA~~~~gi~eL~~~l~~~ 123 (190)
T cd01855 102 VILISAKKGWGVEELINAIKKL 123 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998763
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=2.4e-08 Score=70.97 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=57.9
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
....+|.+++++|++.+....+. .....+. ..++|+++|+||+|+.+... ......+....+.+++.+||+++.
T Consensus 9 i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSa~~~~ 82 (156)
T cd01859 9 IIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYVSAKERL 82 (156)
T ss_pred HHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEEEccccc
Confidence 44569999999999876554431 2222221 23689999999999853211 111112333456789999999999
Q ss_pred CHHHHHHHHHhh
Q psy15625 211 NVETAFQNILTA 222 (223)
Q Consensus 211 ~i~~~~~~i~~~ 222 (223)
|++++++.+.+.
T Consensus 83 gi~~L~~~l~~~ 94 (156)
T cd01859 83 GTKILRRTIKEL 94 (156)
T ss_pred cHHHHHHHHHHH
Confidence 999999998764
No 341
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=5e-08 Score=69.34 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=39.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
...+++++|.+|+|||||+|++.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999976533 2334555443333232322 589999999
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=3.5e-08 Score=78.07 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=44.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
..++++|+|.||||||||||+|.+....... +.+|.+.....+..+.. +.++||||..
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCcC
Confidence 3588999999999999999999998874333 44466666666655543 7999999943
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.66 E-value=9.6e-08 Score=74.60 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=65.8
Q ss_pred cccccccceeEEEeeccccc-chhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC
Q psy15625 129 RRYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL 207 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 207 (223)
.....++|.+++++|+..+. ++..+.+|+..+.. .++|+++|+||+|+.+.. ............+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 33467899999999999887 77777778776654 368999999999996521 1112223334578899999999
Q ss_pred CCCCHHHHHHHHH
Q psy15625 208 DSTNVETAFQNIL 220 (223)
Q Consensus 208 ~~~~i~~~~~~i~ 220 (223)
++.|+++++..+.
T Consensus 148 ~g~gi~~L~~~L~ 160 (287)
T cd01854 148 TGEGLDELREYLK 160 (287)
T ss_pred CCccHHHHHhhhc
Confidence 9999999998764
No 344
>PRK12289 GTPase RsgA; Reviewed
Probab=98.65 E-value=9.1e-08 Score=76.39 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred cccccccceeEEEeeccccc-chhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC
Q psy15625 129 RRYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL 207 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 207 (223)
+....++|.+++|+|+..+. ....+..|+..... .++|+++|+||+|+..... .+.........|.+++.+||+
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEEcC
Confidence 34567899999999998654 33445666655532 4789999999999853211 122223334678899999999
Q ss_pred CCCCHHHHHHHHH
Q psy15625 208 DSTNVETAFQNIL 220 (223)
Q Consensus 208 ~~~~i~~~~~~i~ 220 (223)
++.|++++++.+.
T Consensus 159 tg~GI~eL~~~L~ 171 (352)
T PRK12289 159 TGIGLEALLEQLR 171 (352)
T ss_pred CCCCHHHHhhhhc
Confidence 9999999998875
No 345
>KOG0464|consensus
Probab=98.65 E-value=6.2e-08 Score=76.92 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=70.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC--------cccccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN--------EFNLES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
+..+|+++..-.+||||.-.+++.- .+.... ...-|+++....+.+++++..++++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3467999999999999999998642 111111 123367788888889999999999999999998
Q ss_pred cccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 74 RAITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
+--...+.+--|+++.|||.+..-..+.+.
T Consensus 116 ~leverclrvldgavav~dasagve~qtlt 145 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT 145 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceee
Confidence 887777777777777777776655544444
No 346
>KOG0705|consensus
Probab=98.64 E-value=1.2e-07 Score=77.60 Aligned_cols=156 Identities=19% Similarity=0.330 Sum_probs=111.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
-+.+|++|+|..++|||.|+.+++...+.....+ . ...+.+.+.++++..-+.+.|.+|. ....|..-.|+++
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e-~~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-E-GGRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCC-c-CccceeeEEeeccceEeeeecccCC-----chhhhhhhccceE
Confidence 3568999999999999999999988776443322 2 3344556667888878888888883 3445677889999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+||.+.+.++++.+....-.+.. ......+
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~--------------------------------------------------~r~r~~i 130 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSS--------------------------------------------------YRNISDL 130 (749)
T ss_pred EEEEeccccCHHHHHHHHhhccc--------------------------------------------------ccccccc
Confidence 99999999999999854443321 1112357
Q ss_pred eEEEeecccchh--hccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 169 VIMLVGNKSDLR--HLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 169 p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
|+++++++--.. ..+.+...+.++++... .+.+|+.++.+|.++..+|+.+++
T Consensus 131 ~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~ 186 (749)
T KOG0705|consen 131 PLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQ 186 (749)
T ss_pred hHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHH
Confidence 777777765443 23344445555555444 567999999999999999998765
No 347
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.2e-05 Score=56.12 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=41.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 68 (223)
....||++.|+||+||||++.++.+.-....+ .+ .-+.+..+.-+++..-|.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kv-gGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KV-GGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--ee-eeEEeeeeecCCeEeeeEEEEcc
Confidence 34689999999999999999998765433222 12 13334455568888899999988
No 348
>PRK00098 GTPase RsgA; Reviewed
Probab=98.59 E-value=1.8e-07 Score=73.52 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=62.0
Q ss_pred ccccceeEEEeecccccchhh-hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 132 YRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 132 ~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
-.++|.+++++|+..+..... +..|+..+.. .++|+++|+||+|+.+... ...+........+.+++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 478999999999987755433 3566655543 4789999999999963211 1223344455678899999999999
Q ss_pred CHHHHHHHHH
Q psy15625 211 NVETAFQNIL 220 (223)
Q Consensus 211 ~i~~~~~~i~ 220 (223)
|++++++.+.
T Consensus 154 gi~~L~~~l~ 163 (298)
T PRK00098 154 GLDELKPLLA 163 (298)
T ss_pred cHHHHHhhcc
Confidence 9999998764
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=1.6e-07 Score=66.85 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=55.3
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
....+|.++++.|++.+....+ ......+... ..++|+++|+||+|+.+... .......+........+.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence 3467999999999998744322 1222233222 33589999999999854221 1111222222222335789999999
Q ss_pred CHHHHHHHHHh
Q psy15625 211 NVETAFQNILT 221 (223)
Q Consensus 211 ~i~~~~~~i~~ 221 (223)
|++++++.+.+
T Consensus 82 ~~~~L~~~l~~ 92 (157)
T cd01858 82 GKGSLIQLLRQ 92 (157)
T ss_pred cHHHHHHHHHH
Confidence 99999998865
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=1.7e-07 Score=66.49 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=37.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
...+++++|.||+|||||+|++.+...... ..+. ++........+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~--~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPG--TTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCC--cccceEEEEec---CCEEEEECCC
Confidence 457899999999999999999998764222 2222 22223333332 2579999999
No 351
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.57 E-value=6.7e-08 Score=68.16 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccccccc------ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK------STIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
-.++++|++|||||||+|.|.......... ..--++.....+.++.. ..++||||..++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 368999999999999999999874322211 11111222333444333 378999995443
No 352
>PRK12288 GTPase RsgA; Reviewed
Probab=98.57 E-value=2.8e-07 Score=73.56 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=64.9
Q ss_pred cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLSFIETSALDSTN 211 (223)
Q Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~ 211 (223)
.++|.+++|++.....++..+..|+..... .++|.++|+||+|+.+.... ...+........+.+++++||+++.|
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 579999999998888888888888765543 36899999999999642210 11222233345688999999999999
Q ss_pred HHHHHHHHHh
Q psy15625 212 VETAFQNILT 221 (223)
Q Consensus 212 i~~~~~~i~~ 221 (223)
++++++.|..
T Consensus 196 ideL~~~L~~ 205 (347)
T PRK12288 196 LEELEAALTG 205 (347)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 353
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.56 E-value=2.5e-07 Score=74.57 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=41.0
Q ss_pred CceEEEeecccchhhccCCChHHHHH----HHHHcCC---eEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKT----FAERNNL---SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+.|+++|+||+|+.+ +....++... ++.+.++ .++.+||++++|++++++.|.+
T Consensus 90 ~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 90 GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 579999999999965 2333444443 3455666 4899999999999999999864
No 354
>PRK12288 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.9e-07 Score=74.53 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=36.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccc------eeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTI------GVEFATRSIQVDQKTIKAQIWDTAGQERYR 74 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 74 (223)
++|+|.+|||||||+|+|.+........-.. -++.....+.+++.. .++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999999765432221110 122333334444332 589999965544
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=3e-07 Score=65.28 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=53.4
Q ss_pred ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q psy15625 136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETA 215 (223)
Q Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 215 (223)
|.++++.|++.+.+... .++.. ......++|+++|+||+|+.+.... .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 57899999988766554 22321 1222247899999999998532110 01111222233567899999999999999
Q ss_pred HHHHHh
Q psy15625 216 FQNILT 221 (223)
Q Consensus 216 ~~~i~~ 221 (223)
++.+.+
T Consensus 77 ~~~i~~ 82 (155)
T cd01849 77 ESAFTK 82 (155)
T ss_pred HHHHHH
Confidence 998754
No 356
>KOG0448|consensus
Probab=98.52 E-value=1.6e-06 Score=72.93 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=27.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK 41 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~ 41 (223)
-..||+|.|..++||||++|+++..+..+...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~ 139 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGI 139 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccc
Confidence 45799999999999999999999988766654
No 357
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.51 E-value=7.6e-07 Score=70.17 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=97.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE---cCeEEEEEEEeCCCCc--cc-ccc----c
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAGQE--RY-RAI----T 77 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~--~~-~~~----~ 77 (223)
-+..+.+++.|.-+.|||||+..|.........-.+-+. .....+.+ -...+++.++-..+.. .. .++ .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~-ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSY-LDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhh-hhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 345789999999999999999999877654443221110 00000111 0112233333333211 00 111 1
Q ss_pred hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
...++.+|-++..+|....+.+-.. .++-+ .-...|=.+++..++++.+...- .
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrT--tirGL---------------------~gqk~dYglLvVaAddG~~~~tk--E- 246 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRT--TIRGL---------------------LGQKVDYGLLVVAADDGVTKMTK--E- 246 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHH--HHHHH---------------------hccccceEEEEEEccCCcchhhh--H-
Confidence 2235677777777777766543221 11111 11235556666666666555441 1
Q ss_pred HHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHH----------------------Hc---CCeEEEeecCCCC
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAE----------------------RN---NLSFIETSALDST 210 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~----------------------~~---~~~~~~~Sa~~~~ 210 (223)
-+.....-..|+++++||+|+.+...+ ..+++.++.+ +. -+|++.+|+.+|+
T Consensus 247 -HLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~ 325 (527)
T COG5258 247 -HLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE 325 (527)
T ss_pred -hhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc
Confidence 122222237899999999998542110 1112222211 11 2579999999999
Q ss_pred CHHHHHHHHH
Q psy15625 211 NVETAFQNIL 220 (223)
Q Consensus 211 ~i~~~~~~i~ 220 (223)
|++-+.+.+.
T Consensus 326 GldlL~e~f~ 335 (527)
T COG5258 326 GLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHH
Confidence 9987666544
No 358
>PRK12289 GTPase RsgA; Reviewed
Probab=98.47 E-value=3.1e-07 Score=73.40 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccce-------eeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG-------VEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
.++|+|++|||||||+|+|.+......... .+ ++.....+.+++.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~v-s~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKV-SGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccc-cCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 379999999999999999997654332211 11 23333444443332 68999995443
No 359
>KOG3887|consensus
Probab=98.41 E-value=1.2e-06 Score=64.86 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc---chhhhcCCcEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI---TSAYYRGAVGAL 88 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~~~~~~~~~~~i 88 (223)
.+|+++|...+||||+......... +...-..+.+-....-.+.+..+.+.+||.||+-.+..- ....++++.+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5699999999999998776654432 222111111111111223345678999999998655332 245689999999
Q ss_pred EEEeCCC
Q psy15625 89 LVYDIAK 95 (223)
Q Consensus 89 ~v~d~~~ 95 (223)
+|+|..+
T Consensus 107 fvIDaQd 113 (347)
T KOG3887|consen 107 FVIDAQD 113 (347)
T ss_pred EEEechH
Confidence 9999754
No 360
>PRK13796 GTPase YqeH; Provisional
Probab=98.41 E-value=5.3e-07 Score=72.79 Aligned_cols=57 Identities=25% Similarity=0.368 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc----cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL----ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.++.++|.+|||||||+|+|.+..... ...+..+++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 479999999999999999998643111 11233445555555545433 3799999953
No 361
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.40 E-value=7.5e-07 Score=67.98 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccc------cceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKS------TIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
.++++|.+|||||||+|+|.+........- ...++.....+.+.+ -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 689999999999999999998644322111 111233333343432 27899999543
No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=4.3e-06 Score=69.17 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=48.0
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
+...++++-++|+|+||+|||||++.|....... ++.--..+.++ +.++...+.++.+|.+ ...+ ....+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp~D--l~~m-iDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECPSD--LHQM-IDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeChHH--HHHH-HhHHHhh
Confidence 3455668889999999999999999987643211 11111112222 4556668899999852 1111 1123344
Q ss_pred cEEEEEEeCCC
Q psy15625 85 VGALLVYDIAK 95 (223)
Q Consensus 85 ~~~i~v~d~~~ 95 (223)
|.+++.+|-+-
T Consensus 135 DLVlLlIdgnf 145 (1077)
T COG5192 135 DLVLLLIDGNF 145 (1077)
T ss_pred heeEEEecccc
Confidence 55555555443
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.39 E-value=3.6e-06 Score=63.40 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=51.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEEc---CeEEEEEEEeCCCCccccc------cc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVD---QKTIKAQIWDTAGQERYRA------IT 77 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~G~~~~~~------~~ 77 (223)
.+..-|+|+|++++|||||+|.|.+. .+....... .++.....+... +....+.++||+|..+... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~-~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQ-QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCC-CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 45667999999999999999999998 665443211 122222222222 2346899999999654322 12
Q ss_pred hhhhcC--CcEEEEEEeCCC
Q psy15625 78 SAYYRG--AVGALLVYDIAK 95 (223)
Q Consensus 78 ~~~~~~--~~~~i~v~d~~~ 95 (223)
...+.. ++.+++..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 223333 666665555443
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.37 E-value=1.1e-06 Score=61.28 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=50.8
Q ss_pred cccccceeEEEeecccccchhh--hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYEN--VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD 208 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 208 (223)
....+|.+++++|++.+.+..+ +..++... . .++|+++|+||+|+.+... ..+..+...+.+.+++++||++
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecC
Confidence 3467999999999998876553 33333322 1 3689999999999854221 2233444556677899999998
Q ss_pred CCC
Q psy15625 209 STN 211 (223)
Q Consensus 209 ~~~ 211 (223)
+.+
T Consensus 82 ~~~ 84 (141)
T cd01857 82 ENA 84 (141)
T ss_pred CCc
Confidence 764
No 365
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=1e-06 Score=71.02 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc----cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL----ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.++.++|.+|||||||+|+|.+..... ......+++.....+.++. .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 489999999999999999999854211 1112233444444444422 24799999954
No 366
>KOG1143|consensus
Probab=98.36 E-value=1.1e-07 Score=74.54 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=28.4
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES 40 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~ 40 (223)
+.+.-.++++++|...+|||||+..|+..+.....
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~ 196 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGN 196 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCC
Confidence 34445799999999999999999999988765443
No 367
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.36 E-value=8.4e-07 Score=68.38 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc------cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF------NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR 74 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 74 (223)
..+++|.+|||||||+|+|..+.. .......--++.....+.+++.+ .+.||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578999999999999999986322 11221111234445556565444 679999965443
No 368
>KOG1424|consensus
Probab=98.33 E-value=8.1e-07 Score=72.36 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=41.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
.+.|+++|.|||||||+||+|.+.+.-... .|+|-+-.-.++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc
Confidence 589999999999999999999998864443 5555544444443332 5689999994
No 369
>KOG4273|consensus
Probab=98.32 E-value=1.5e-05 Score=59.57 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=58.6
Q ss_pred EEEEEEcCCCC--cHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 12 FKVVLIGDSGV--GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 12 ~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..++|+|.+|+ ||-+|+.+|....+.........+.+...++...+....+.+.=.+--.++.-..........++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 46889999999 9999999999888766655444444444443322211122222211111111111122344568899
Q ss_pred EEeCCCcccHHHHHHHHH
Q psy15625 90 VYDIAKHLTYENVERWLR 107 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~ 107 (223)
+||.+..+.+..++.|+-
T Consensus 85 vfdlse~s~l~alqdwl~ 102 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLP 102 (418)
T ss_pred EEeccchhhhHHHHhhcc
Confidence 999999999999998754
No 370
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.30 E-value=5.1e-06 Score=76.49 Aligned_cols=129 Identities=25% Similarity=0.304 Sum_probs=71.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccc----c--ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLES----K--STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
-+|+|++|+||||+++.- +-.++-.. . ...+.+. ...+.+.. ...++||+|.--...
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~------------ 176 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQD------------ 176 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCC------------
Confidence 579999999999999886 33332211 0 1111111 12222333 346899999311000
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc---------hhhhHHHHH
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT---------YENVERWLR 158 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~~~~~~ 158 (223)
......-.....++..+.++... +..+++|+++++.+-.+ ...++.-+.
T Consensus 177 -----~~~~~~~~~W~~fL~~L~k~R~r-----------------~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~ 234 (1169)
T TIGR03348 177 -----SDPEEDAAAWLGFLGLLRKHRRR-----------------QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQ 234 (1169)
T ss_pred -----CcccccHHHHHHHHHHHHHhCCC-----------------CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 00011122233344444443322 34778888888774422 134556667
Q ss_pred HhhhccCCCceEEEeecccchhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRH 181 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~ 181 (223)
++....+.+.|+.|++||+|+..
T Consensus 235 el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 235 ELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCEEEEEecchhhc
Confidence 77777777999999999999853
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.30 E-value=2.1e-06 Score=61.92 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=55.0
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
..+.+|.+++++|++.+....+. .....+ .++|+++|+||+|+.+... .....+.....+..++.+||+++.
T Consensus 16 ~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iSa~~~~ 87 (171)
T cd01856 16 KLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVNAKSGK 87 (171)
T ss_pred HHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEECCCcc
Confidence 33579999999999877554332 111111 2478999999999853211 111212223345578999999999
Q ss_pred CHHHHHHHHHh
Q psy15625 211 NVETAFQNILT 221 (223)
Q Consensus 211 ~i~~~~~~i~~ 221 (223)
|++++.+.+.+
T Consensus 88 gi~~L~~~l~~ 98 (171)
T cd01856 88 GVKKLLKAAKK 98 (171)
T ss_pred cHHHHHHHHHH
Confidence 99999988765
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.29 E-value=2.4e-06 Score=66.43 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=56.2
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
....+|.++++.|++.+.+... ..+.... .++|+++|+||+|+.+... .....+...+.+.+++.+||+++.
T Consensus 18 ~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 18 KLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEECCCcc
Confidence 3457999999999988766544 1111111 2579999999999853211 111111223346678999999999
Q ss_pred CHHHHHHHHHhh
Q psy15625 211 NVETAFQNILTA 222 (223)
Q Consensus 211 ~i~~~~~~i~~~ 222 (223)
|++++.+.+.+.
T Consensus 90 gi~~L~~~i~~~ 101 (276)
T TIGR03596 90 GVKKIIKAAKKL 101 (276)
T ss_pred cHHHHHHHHHHH
Confidence 999998887653
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.27 E-value=4.4e-05 Score=60.45 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=41.6
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
..+.+++|+|++.+..... . ....... -.+.-+++||.|... ..-.........+.|+.+++ +|++++
T Consensus 232 ~p~~~~LVl~a~~g~~~~~--~-a~~f~~~---~~~~giIlTKlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~ 299 (318)
T PRK10416 232 APHEVLLVLDATTGQNALS--Q-AKAFHEA---VGLTGIILTKLDGTA----KGGVVFAIADELGIPIKFIG--VGEGID 299 (318)
T ss_pred CCceEEEEEECCCChHHHH--H-HHHHHhh---CCCCEEEEECCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChh
Confidence 3566889999986532211 1 1111111 123468899999543 12244555667799988888 677776
Q ss_pred HH
Q psy15625 214 TA 215 (223)
Q Consensus 214 ~~ 215 (223)
++
T Consensus 300 Dl 301 (318)
T PRK10416 300 DL 301 (318)
T ss_pred hC
Confidence 54
No 374
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.26 E-value=1.7e-05 Score=62.66 Aligned_cols=176 Identities=21% Similarity=0.215 Sum_probs=87.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (223)
.++.|-=|||||||++.++.+... . .+-. +..+...+.+ |- | ............-.+++++|- +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g-~-------kiAV--IVNEfGEvgI---D~-~-~~l~~~~e~~~El~nGCICCT-~ 67 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDG-K-------KIAV--IVNEFGEVGI---DG-G-ALLSDTGEEVVELTNGCICCT-V 67 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCC-C-------cEEE--EEecCccccc---cC-C-CccccCCccEEEeCCceEEEe-c
Confidence 578899999999999999987641 1 1101 1011111111 10 0 000011111334445555433 2
Q ss_pred CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcc---cc--------ccccccceeEEEeecccccchhh-hHHHHHHhh
Q psy15625 94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSL---LR--------RYYRGAVGALLVYDIAKHLTYEN-VERWLRELR 161 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~ 161 (223)
. .+-...+....+ .+.. .+.+.|+..+-... .. ...-..|+++-++|+.+-....+ +.......-
T Consensus 68 r-~dl~~~~~~L~~-~~~~-~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi 144 (323)
T COG0523 68 R-DDLLPALERLLR-RRDR-PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL 144 (323)
T ss_pred c-chhHHHHHHHHh-ccCC-CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH
Confidence 1 122333333333 2222 44455554443222 11 12247788999999998766544 323322222
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHH
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAF 216 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~ 216 (223)
... =+|++||+|+.+... .+..+....+. .++++.++. .+.+..+++
T Consensus 145 a~A-----D~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 145 AFA-----DVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred HhC-----cEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 222 288999999976442 44445555544 456888776 344444433
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=2.8e-05 Score=61.80 Aligned_cols=71 Identities=11% Similarity=-0.027 Sum_probs=42.5
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
..+.+++|+|+..+........ .+.... .+--+++||.|... ..=....++...+.|+.+++ +|++++
T Consensus 252 ~pd~~iLVl~a~~g~d~~~~a~---~f~~~~---~~~giIlTKlD~~~----~~G~~ls~~~~~~~Pi~~i~--~Gq~v~ 319 (336)
T PRK14974 252 KPDLVIFVGDALAGNDAVEQAR---EFNEAV---GIDGVILTKVDADA----KGGAALSIAYVIGKPILFLG--VGQGYD 319 (336)
T ss_pred CCceEEEeeccccchhHHHHHH---HHHhcC---CCCEEEEeeecCCC----CccHHHHHHHHHCcCEEEEe--CCCChh
Confidence 4677889999877643332211 111111 12367899999754 12234455556788888887 688887
Q ss_pred HHH
Q psy15625 214 TAF 216 (223)
Q Consensus 214 ~~~ 216 (223)
++.
T Consensus 320 Dl~ 322 (336)
T PRK14974 320 DLI 322 (336)
T ss_pred hcc
Confidence 653
No 376
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.23 E-value=2.9e-06 Score=66.38 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccccccccc------ceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKST------IGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
-.++++|++|+|||||+|.|.+.......... ..++.....+..... ..++|+||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46999999999999999999986543322111 112232333334322 268999996544
No 377
>PRK00098 GTPase RsgA; Reviewed
Probab=98.23 E-value=2.9e-06 Score=66.67 Aligned_cols=57 Identities=25% Similarity=0.238 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccc------eeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI------GVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
.++++|++|||||||+|+|.+........-.. .++.....+.+++. ..++||||..+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 58999999999999999998765432221110 02222333333332 37899999543
No 378
>KOG0465|consensus
Probab=98.22 E-value=4.7e-06 Score=69.32 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=67.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----c-----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----S-----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
++.-+|++.-.-.+||||+-++++...-... . ...-+++.......+.++...++++||||+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3456799999999999999999765321110 0 01223444444444566788999999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 105 (223)
|.--....++--|+++++++....-..+....|
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~ 149 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW 149 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHH
Confidence 988888888888888888887776555555433
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.21 E-value=4.4e-06 Score=65.37 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=56.9
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
....+|.++++.|++.+.+... .++.... . ++|+++|+||+|+.+... .+.......+.+.+++.+|++++.
T Consensus 21 ~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 21 NLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCcc
Confidence 3457999999999988766554 2222221 1 579999999999853210 111222223446778999999999
Q ss_pred CHHHHHHHHHhh
Q psy15625 211 NVETAFQNILTA 222 (223)
Q Consensus 211 ~i~~~~~~i~~~ 222 (223)
|++++.+.+.+.
T Consensus 93 gi~~L~~~l~~~ 104 (287)
T PRK09563 93 GVKKILKAAKKL 104 (287)
T ss_pred cHHHHHHHHHHH
Confidence 999999887653
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.19 E-value=0.00011 Score=56.90 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=42.1
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
..+.+++|+|+..+..... . ...+.... .+--+++||.|... ..-....+....+.|+.+++ +|++++
T Consensus 190 ~~~~~~LVl~a~~~~~~~~--~-~~~f~~~~---~~~g~IlTKlDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~ 257 (272)
T TIGR00064 190 APDEVLLVLDATTGQNALE--Q-AKVFNEAV---GLTGIILTKLDGTA----KGGIILSIAYELKLPIKFIG--VGEKID 257 (272)
T ss_pred CCceEEEEEECCCCHHHHH--H-HHHHHhhC---CCCEEEEEccCCCC----CccHHHHHHHHHCcCEEEEe--CCCChH
Confidence 3788999999975532221 1 12222111 13478899999754 22244455556688888888 677776
Q ss_pred HH
Q psy15625 214 TA 215 (223)
Q Consensus 214 ~~ 215 (223)
++
T Consensus 258 dl 259 (272)
T TIGR00064 258 DL 259 (272)
T ss_pred hC
Confidence 54
No 381
>KOG0467|consensus
Probab=98.14 E-value=9.2e-06 Score=69.19 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=68.9
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCccccc--------------ccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--------------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
+......-+|+++..-.=|||||...|....--.. ..-+-+++.....+..-...+.++++|.|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 34455677899999999999999999976432111 1122344444444444456678999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHLTY 99 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 99 (223)
.+|.+......+-+|++++.+|+...--.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~ 111 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCS 111 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccch
Confidence 99999999999999999988888765443
No 382
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.12 E-value=3.7e-05 Score=61.90 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=49.7
Q ss_pred eeEEEeecccccch--hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC--CCCCH
Q psy15625 137 GALLVYDIAKHLTY--ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL--DSTNV 212 (223)
Q Consensus 137 ~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i 212 (223)
++++..|.+-..-. .++...-+.+.....-++|+++++|-.+... .-..+...++..+++++++++++. +...+
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI 225 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDI 225 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHH
Confidence 34444555533222 2333333444444445899999999988533 234456677777889998887754 45677
Q ss_pred HHHHHHHH
Q psy15625 213 ETAFQNIL 220 (223)
Q Consensus 213 ~~~~~~i~ 220 (223)
..+++.+.
T Consensus 226 ~~Il~~vL 233 (492)
T PF09547_consen 226 TRILEEVL 233 (492)
T ss_pred HHHHHHHH
Confidence 77776654
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.10 E-value=1.7e-05 Score=64.06 Aligned_cols=79 Identities=25% Similarity=0.372 Sum_probs=54.4
Q ss_pred ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHH----HHHcCC---eEEEeecCC
Q psy15625 136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF----AERNNL---SFIETSALD 208 (223)
Q Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~ 208 (223)
+.+++++|+.+.. ..|...+..... +.|+++|+||+|+.+ +....++...+ +...|+ .++.+||++
T Consensus 71 ~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~ 143 (365)
T PRK13796 71 ALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK 143 (365)
T ss_pred cEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC
Confidence 3788899987643 233444444332 678999999999964 23333444333 445565 589999999
Q ss_pred CCCHHHHHHHHHh
Q psy15625 209 STNVETAFQNILT 221 (223)
Q Consensus 209 ~~~i~~~~~~i~~ 221 (223)
+.|++++++.|.+
T Consensus 144 g~gI~eL~~~I~~ 156 (365)
T PRK13796 144 GHGIDELLEAIEK 156 (365)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999865
No 384
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.09 E-value=1.5e-05 Score=56.71 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
+.++|..|+|||||++++....
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 6799999999999999998763
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=98.08 E-value=1.3e-05 Score=64.60 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=58.8
Q ss_pred ccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCC
Q psy15625 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDST 210 (223)
Q Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 210 (223)
-.+.|.++++.++........+..++...... ++|.++|+||+|+.+.. .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 46899999999997555555555666555543 66778899999996521 111222222 357789999999999
Q ss_pred CHHHHHHHHH
Q psy15625 211 NVETAFQNIL 220 (223)
Q Consensus 211 ~i~~~~~~i~ 220 (223)
|++++.+++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999998874
No 386
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.08 E-value=5.8e-05 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
|+++|.+|+||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998754
No 387
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.07 E-value=0.00021 Score=51.93 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=32.2
Q ss_pred cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc
Q psy15625 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN 197 (223)
Q Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 197 (223)
-..+.++.+.|+..-.........+...-... =++++||+|+.+.. ...+..++..++.
T Consensus 112 ~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 112 FRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-QKIERVREMIREL 170 (178)
T ss_dssp ESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH---HHHHHHHHHHH
T ss_pred ccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-hHHHHHHHHHHHH
Confidence 46788999999966433333322222222222 27899999998744 2235555555544
No 388
>KOG2484|consensus
Probab=98.01 E-value=5.1e-06 Score=65.85 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=41.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
..+++++|+|.||+||||+||+|.....-... +..|.+.....+.++. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 45799999999999999999999988763333 2333433333333332 5789999994
No 389
>PRK13695 putative NTPase; Provisional
Probab=98.01 E-value=0.00019 Score=51.92 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
...+......+.|++++.+|.... .....+....+..++++ +.+|-+++.+.+.+
T Consensus 116 ~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~ 170 (174)
T PRK13695 116 VKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---TPENRDSLPFEILN 170 (174)
T ss_pred HHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---cchhhhhHHHHHHH
Confidence 344433334578999999985432 23344555566677776 55566677776654
No 390
>KOG0463|consensus
Probab=98.00 E-value=6.1e-05 Score=59.61 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
..+|+++|.-.+|||||+..|+..+.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeL 158 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGEL 158 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeeccc
Confidence 68999999999999999988876544
No 391
>KOG0447|consensus
Probab=97.95 E-value=0.00036 Score=57.96 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=37.4
Q ss_pred cccccceeEEEe-ecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHH
Q psy15625 131 YYRGAVGALLVY-DIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER 196 (223)
Q Consensus 131 ~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 196 (223)
++.+..+||+|+ |.+-.+....+.. .+....+.+...|+|++|.|+.+....+...++++..-
T Consensus 445 yM~NPNAIILCIQDGSVDAERSnVTD---LVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 445 YMQNPNAIILCIQDGSVDAERSIVTD---LVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred HhcCCCeEEEEeccCCcchhhhhHHH---HHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 445566666666 2221111111122 23444445677899999999998667777777777654
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.95 E-value=0.00015 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
..|+++|++||||||.+-+|....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 358999999999999999987543
No 393
>KOG2485|consensus
Probab=97.93 E-value=1.6e-05 Score=61.25 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=39.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccc----cccceeeeEEEE-EEEcCeEEEEEEEeCCCC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----KSTIGVEFATRS-IQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G~ 70 (223)
.+..+++.|+|.||+|||||+|++......... -+.+|.+..... +.+.... .+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 345789999999999999999998764432221 122233333332 3333333 5889999994
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.93 E-value=0.00012 Score=59.87 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
+..|+++|++||||||++.+|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 395
>KOG0460|consensus
Probab=97.91 E-value=4.2e-05 Score=59.67 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=62.6
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcc----------c----ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF----------N----LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
...+.++|+-+|.-.=|||||-.+++.-.. . ..-...-|+++...++.+.......-=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 345679999999999999999999875211 0 01113446677777777766666677789999887
Q ss_pred ccccchhhhcCCcEEEEEEeCCC
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~ 95 (223)
|-.....-....|+.++|+..++
T Consensus 130 YIKNMItGaaqMDGaILVVaatD 152 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATD 152 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCC
Confidence 76555444556677777777766
No 396
>KOG3859|consensus
Probab=97.86 E-value=3.9e-05 Score=58.27 Aligned_cols=61 Identities=26% Similarity=0.468 Sum_probs=45.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccc----cccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----KSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.++|+.+|..|.|||||+..|.+-.+.... .+.+.....+..++-.+..+.+.++||.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 689999999999999999999998775432 2344444444444446677889999999954
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.85 E-value=0.00029 Score=58.13 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.+..|+++|++|+||||++.+|...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999998753
No 398
>KOG1534|consensus
Probab=97.84 E-value=3.3e-05 Score=56.29 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+-+.|+|++|+||||+++.+...
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHH
Confidence 56889999999999999998753
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.84 E-value=0.00083 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-++++|++|+||||+...+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888654
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.77 E-value=7.5e-05 Score=53.58 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 67 (223)
+|+++|+||+|||||++++....... ..+.. -+.+..+.-++...-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEEC
Confidence 68999999999999999988654211 11221 233333445677778888888
No 401
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=7.8e-05 Score=67.66 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=33.2
Q ss_pred cccceeEEEeecccccchhh---------hHHHHHHhhhccCCCceEEEeecccchhh
Q psy15625 133 RGAVGALLVYDIAKHLTYEN---------VERWLRELRDHADQNIVIMLVGNKSDLRH 181 (223)
Q Consensus 133 ~~~~~~~~~~d~~~~~~~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 181 (223)
+..++|++.+++++-.+... ++.=+.++.....-..|+.+++||.|+..
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 44778888888775433322 23334555555666899999999999854
No 402
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.3e-05 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 403
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.69 E-value=0.00081 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.+|.|.-|||||||+|++...
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999865
No 404
>KOG0466|consensus
Probab=97.68 E-value=6.5e-05 Score=57.85 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=39.7
Q ss_pred ceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+-++++-||+|+..+.+. ..+++..|... .+.+++++||.-.+|++-+.++|+..
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk 239 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK 239 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence 457888999999753322 12344444432 36789999999999999999998753
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0018 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..+|+|+|++||||||++.+|...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999753
No 406
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.63 E-value=0.00012 Score=41.89 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=28.4
Q ss_pred ccceeEEEeecccc--cchhhhHHHHHHhhhccCCCceEEEeecccc
Q psy15625 134 GAVGALLVYDIAKH--LTYENVERWLRELRDHADQNIVIMLVGNKSD 178 (223)
Q Consensus 134 ~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 178 (223)
-.+++++++|++.. .+.+.....+..++.... ++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 36789999999976 445666667777766654 799999999998
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.61 E-value=0.0067 Score=45.36 Aligned_cols=93 Identities=23% Similarity=0.149 Sum_probs=56.3
Q ss_pred CCcEEEEEEeCCC--ccc-HHHHHHHHHHHHHhc-CCceeEEEeCCCc----cccccccccceeEEEeecccc--cchhh
Q psy15625 83 GAVGALLVYDIAK--HLT-YENVERWLRELRDHA-DQNIVIMLVGPPS----LLRRYYRGAVGALLVYDIAKH--LTYEN 152 (223)
Q Consensus 83 ~~~~~i~v~d~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~--~~~~~ 152 (223)
..+.=++|.-... .+. +=....|++.+.++- .+.....++++.. ..+.....+|.++.|.|++.. .+...
T Consensus 96 ~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~vivVvDpS~~sl~taer 175 (255)
T COG3640 96 NGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDLVIVVVDPSYKSLRTAER 175 (255)
T ss_pred cCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhccccccCCCEEEEEeCCcHHHHHHHHH
Confidence 3344455554443 222 112344555555543 3346666666654 456777899999999999855 44455
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchh
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLR 180 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 180 (223)
+++..+.+. =+++.+|+||.|-.
T Consensus 176 i~~L~~elg-----~k~i~~V~NKv~e~ 198 (255)
T COG3640 176 IKELAEELG-----IKRIFVVLNKVDEE 198 (255)
T ss_pred HHHHHHHhC-----CceEEEEEeeccch
Confidence 555554443 26899999999953
No 408
>KOG3929|consensus
Probab=97.59 E-value=2.3e-05 Score=58.85 Aligned_cols=185 Identities=17% Similarity=0.191 Sum_probs=98.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe--EEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK--TIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
......|++.|..+. ||+|++.....-... .++...+|....- ..+. .--.++|+.+|......+..-.++.-.
T Consensus 42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~-~ptlaLEYtygRR-~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~ 117 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGGK--TTIILRCFDRDEPPK-PPTLALEYTYGRR-AKGHNPKDIANFWELGGGTSLLDLLSVPITGDT 117 (363)
T ss_pred ccceeEEEEecCCce--eEeehhhcCcccCCC-CCceeeeeehhhh-ccCCCchhHHHHHHhcCCccHHHHhcCcccccc
Confidence 344677888886654 899988876543222 2333333322221 2222 223578999986655444443333322
Q ss_pred ----EEEEEEeCCCccc-HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH--
Q psy15625 86 ----GALLVYDIAKHLT-YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR-- 158 (223)
Q Consensus 86 ----~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-- 158 (223)
.+|++.|++.++. +..++..+..++.+.+...- .+....... .+....
T Consensus 118 l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~-----------------------~~~k~~~~L--~E~mrqR~ 172 (363)
T KOG3929|consen 118 LRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIM-----------------------KLGKTNAKL--VEEMRQRI 172 (363)
T ss_pred hhhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhcCHHH--HHHHHHHH
Confidence 5688999999876 66666666666654432100 000000000 001111
Q ss_pred ---------HhhhccCCCceEEEeecccchhh-----ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 159 ---------ELRDHADQNIVIMLVGNKSDLRH-----LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 159 ---------~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..+...+..+|++||+.|.|.-. .+.....-++.++..+|...+..|++-..-.+.+.+.+..
T Consensus 173 ~~rvgqd~~d~e~~dP~P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~H 249 (363)
T KOG3929|consen 173 WNRVGQDHPDHELIDPFPVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINH 249 (363)
T ss_pred HHhcccCCCchhhcCCCCCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHH
Confidence 11222344789999999999742 1222233455666677777777777765555555554443
No 409
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.58 E-value=7.9e-05 Score=43.69 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
..+|.|+.|+|||||+.++...-+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 488999999999999999876544
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0019 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.|+|+|++|+||||++.+|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
No 411
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=7e-05 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
||+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 412
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=7.5e-05 Score=53.86 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+|+|++|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.50 E-value=9.3e-05 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.764 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
||+|+|+|||||||+.++|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 414
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.49 E-value=0.00012 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
|++.|.+|+||||+.+++...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998653
No 415
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=9e-05 Score=55.66 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-|+++|++|||||||++.+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999987543
No 416
>KOG0085|consensus
Probab=97.48 E-value=5.3e-05 Score=56.05 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~ 32 (223)
..+|.+++|...+||||++..+.
T Consensus 38 relkllllgtgesgkstfikqmr 60 (359)
T KOG0085|consen 38 RELKLLLLGTGESGKSTFIKQMR 60 (359)
T ss_pred hhheeeeecCCCcchhhHHHHHH
Confidence 36899999999999999998864
No 417
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.44 E-value=0.00032 Score=57.44 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=35.7
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
....+.++|++|+...+..|..++.+++++++|+++++.+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd 273 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD 273 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchh
Confidence 5568899999999999999999999999999999998643
No 418
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.44 E-value=0.00011 Score=51.14 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
|+++|+|||||||+.+.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.44 E-value=0.0022 Score=52.94 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
++..|+++|++|+||||++.+|..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999998888765
No 420
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.42 E-value=0.0001 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 421
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.41 E-value=0.00089 Score=51.99 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=58.3
Q ss_pred cccceeEEEeecccc-cchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625 133 RGAVGALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTN 211 (223)
Q Consensus 133 ~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 211 (223)
.+.|-+++++.+..+ .+...+.+++-..+. .++.-+|++||+|+.+......++........|.+++.+|++++.+
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence 345556666655555 444444455544444 3566677799999986444333456667778899999999999999
Q ss_pred HHHHHHHHH
Q psy15625 212 VETAFQNIL 220 (223)
Q Consensus 212 i~~~~~~i~ 220 (223)
++++.+.+.
T Consensus 155 ~~~l~~~l~ 163 (301)
T COG1162 155 LEELAELLA 163 (301)
T ss_pred HHHHHHHhc
Confidence 999988764
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.41 E-value=0.0023 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.-.|+++|++||||||-+-+|-....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45699999999999999999876554
No 423
>KOG0459|consensus
Probab=97.40 E-value=0.0002 Score=57.21 Aligned_cols=86 Identities=19% Similarity=0.101 Sum_probs=52.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccc--------------c---ccc------------ccceeeeEEEEEEEcCeE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------L---ESK------------STIGVEFATRSIQVDQKT 59 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~---~~~------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+++.|+|.-.+||||+-..+....-. + ..+ ..-+.+.....-.+.-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 34689999999999999987665431000 0 000 000112222222223333
Q ss_pred EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC
Q psy15625 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA 94 (223)
Q Consensus 60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (223)
..+.+.|.||+..|.+....-..++|..++|.+..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar 191 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISAR 191 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhh
Confidence 47899999999888776666667777777777653
No 424
>KOG2423|consensus
Probab=97.39 E-value=8.3e-05 Score=59.22 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
...+-+.|+++|.||+||||+||.|...++-...+-.-+ ++.+++----..+-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE----TKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE----TKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc----chHHHHHHHHhceeEecCCC
No 425
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.38 E-value=0.00015 Score=50.06 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-.++|+|+.|+|||||++.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3689999999999999999987653
No 426
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.37 E-value=0.00073 Score=46.34 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.|++.|+.|+|||||++.+....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998864
No 427
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.36 E-value=0.00015 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-++|+|++|||||||++-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 489999999999999999876443
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00012 Score=52.46 Aligned_cols=24 Identities=42% Similarity=0.702 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-+++.|++|||||||+++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999876
No 429
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.34 E-value=0.002 Score=48.22 Aligned_cols=172 Identities=11% Similarity=0.100 Sum_probs=93.7
Q ss_pred EcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc--CCcEEEEEEeCC
Q psy15625 17 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDIA 94 (223)
Q Consensus 17 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~ 94 (223)
=...|+||||++-.|...-.... -++.++|.........-+....+ ..+..+.|++..
T Consensus 8 s~KGGaGKTT~~~~LAs~la~~G--------------------~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~ 67 (231)
T PF07015_consen 8 SSKGGAGKTTAAMALASELAARG--------------------ARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD 67 (231)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCC--------------------CeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc
Confidence 35678999999999876543111 15577887665443322121111 223334455543
Q ss_pred CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccc----cccccceeEEEeecccccc--hhhhHHHHHHhhhccCCCc
Q psy15625 95 KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR----YYRGAVGALLVYDIAKHLT--YENVERWLRELRDHADQNI 168 (223)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 168 (223)
. ...++..++.... ...++.++++++.... ....+|.++..+-.+.... ....-+|+..+.......+
T Consensus 68 e---~~~l~~~~e~a~~---~~~d~VlvDleG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~i 141 (231)
T PF07015_consen 68 E---LTILEDAYEAAEA---SGFDFVLVDLEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDI 141 (231)
T ss_pred c---hhhHHHHHHHHHh---cCCCEEEEeCCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3 3333433333322 2356777777655433 3358999999887774422 2333455666655556689
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQ 217 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 217 (223)
|.-|+.|++.-.. .........++.. +++++.+.-....-..++|.
T Consensus 142 p~~Vl~Tr~~~~~-~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 142 PAAVLFTRVPAAR-LTRAQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred CeeEEEecCCcch-hhHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 9999999997431 1111112223222 46777766665555555544
No 430
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00024 Score=52.27 Aligned_cols=24 Identities=50% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++++|++|||||||++.+.+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 689999999999999999976543
No 431
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.34 E-value=0.0015 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-+++.||+|+||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999998754
No 432
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.33 E-value=0.002 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.++|+|++||||||++.+|...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999888654
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00018 Score=50.93 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~ 32 (223)
+|++.|.||+||||+.++|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 79999999999999999997
No 434
>PRK01889 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00027 Score=57.02 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-+++++|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999997544
No 435
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.32 E-value=0.00019 Score=48.83 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 436
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.30 E-value=0.00027 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.....|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 437
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.30 E-value=0.0003 Score=52.35 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
++..-|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34577999999999999999999864
No 438
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.28 E-value=0.0038 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678899999999999999864
No 439
>KOG1970|consensus
Probab=97.27 E-value=0.0012 Score=54.97 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=41.7
Q ss_pred eEEEeecccccchhhhHHHHHHhhhccC-CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q psy15625 138 ALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAF 216 (223)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 216 (223)
++++-|........+.+.+.+.+..+.. ...|+|++++-+-..+.......-...+....++..+........-+++.+
T Consensus 197 liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L 276 (634)
T KOG1970|consen 197 LILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFL 276 (634)
T ss_pred EEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHH
Confidence 4555555555444343344444433332 357888888777654322111222223334556666666655555555555
Q ss_pred HHHH
Q psy15625 217 QNIL 220 (223)
Q Consensus 217 ~~i~ 220 (223)
..|+
T Consensus 277 ~ric 280 (634)
T KOG1970|consen 277 KRIC 280 (634)
T ss_pred HHHH
Confidence 5544
No 440
>PRK06217 hypothetical protein; Validated
Probab=97.26 E-value=0.00026 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 441
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.016 Score=47.00 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.++++|+.||||||++.++...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999754
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00033 Score=48.06 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFN 37 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~ 37 (223)
-.++++|++|+||||+++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 443
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.21 E-value=0.00031 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999664
No 444
>PRK03839 putative kinase; Provisional
Probab=97.21 E-value=0.00032 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+++|.|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999765
No 445
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.21 E-value=0.00033 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.|+|+|+.|+|||||++.|.+.-.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987654
No 446
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.21 E-value=0.00032 Score=48.63 Aligned_cols=21 Identities=57% Similarity=0.858 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 447
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00033 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+|+|+|||||||+.+.|...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999653
No 448
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.19 E-value=0.00033 Score=46.02 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~ 32 (223)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999985
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.19 E-value=0.00032 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998775
No 450
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.19 E-value=0.00035 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
|++.|+||+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998753
No 451
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.18 E-value=0.00044 Score=49.61 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++|+|++|+|||||+|-+.+=..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999999977544
No 452
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.18 E-value=0.0049 Score=39.33 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=42.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc-chhhhcCCcEEEEEEe
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD 92 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d 92 (223)
+++.|.+|+||||+...+...-..... . . ..++ .+.++|+++....... .......++.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK-R-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-e-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999988765432111 1 1 1112 6788999985432221 1345566777777666
Q ss_pred CCC
Q psy15625 93 IAK 95 (223)
Q Consensus 93 ~~~ 95 (223)
...
T Consensus 68 ~~~ 70 (99)
T cd01983 68 PEA 70 (99)
T ss_pred Cch
Confidence 543
No 453
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00062 Score=50.64 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
..-|+|+|++|||||||+++|....
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhcC
Confidence 4568899999999999999997643
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.17 E-value=0.00034 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
|+|.|++|||||||.+.|.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997753
No 455
>KOG3347|consensus
Probab=97.16 E-value=0.00028 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
....+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4567899999999999999999974
No 456
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.15 E-value=0.0039 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+..++++|++|+||||++-.|...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 567999999999999998887654
No 457
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.14 E-value=0.00056 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
..-++|+|.+|+|||||++++....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 3468999999999999999998654
No 458
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00038 Score=51.89 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999977
No 459
>PRK10646 ADP-binding protein; Provisional
Probab=97.13 E-value=0.0028 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-|++-|.-|+|||||.+.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998764
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.13 E-value=0.00045 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++++|++|+|||||++.+.+.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999998753
No 461
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.12 E-value=0.00044 Score=50.06 Aligned_cols=21 Identities=43% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~ 32 (223)
-.++++|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999885
No 462
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00045 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998753
No 463
>PRK13949 shikimate kinase; Provisional
Probab=97.12 E-value=0.00047 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+|+|++|+||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988764
No 464
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.11 E-value=0.0004 Score=52.98 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=30.2
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhcc-CCCceEEEeecccch
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQNIVIMLVGNKSDL 179 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl 179 (223)
.+..--.+++...++..-+.......+..+.... ..+.-++++..-.++
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~ 201 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL 201 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 3344455677777777777766666666665555 335677777655544
No 465
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.11 E-value=0.00044 Score=50.08 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
--.++++|+.|+|||||++.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478999999999999999998764
No 466
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00039 Score=51.16 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.+++|++|||||||++.+.+-
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 3689999999999999998654
No 467
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.10 E-value=0.00043 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.|+|+|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998753
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.10 E-value=0.00042 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.|+++|++||||||+++++...
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
No 469
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.09 E-value=0.00047 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998764
No 470
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.07 E-value=0.00046 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
|+|.|++|||||||++.|.+.-
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998643
No 471
>PRK08233 hypothetical protein; Provisional
Probab=97.07 E-value=0.00058 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999865
No 472
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.00052 Score=51.90 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+.+++++|+|++|||||+|+..++...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 346899999999999999999988653
No 473
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.06 E-value=0.00062 Score=51.51 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
..+..-|+|.|++|+|||||++.+.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678899999999999999999987543
No 474
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.00046 Score=54.75 Aligned_cols=23 Identities=52% Similarity=0.641 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~ 36 (223)
++++|++|||||||++.+.+-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999987543
No 475
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.06 E-value=0.00054 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 476
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.06 E-value=0.00053 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 477
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.00078 Score=50.51 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
+|+++|..|+|||||++-+.+-..
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccC
Confidence 799999999999999999987543
No 478
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.05 E-value=0.0011 Score=44.80 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
--|++-|+-|+|||||.+.+....
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999998754
No 479
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.05 E-value=0.00054 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 480
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.04 E-value=0.00056 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 481
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.04 E-value=0.00057 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 482
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00058 Score=51.86 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 483
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.02 E-value=0.00062 Score=50.57 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|+.|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 484
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00054 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998754
No 485
>PRK04040 adenylate kinase; Provisional
Probab=97.02 E-value=0.00067 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+|+|.||+||||+.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 486
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.02 E-value=0.00062 Score=50.88 Aligned_cols=23 Identities=48% Similarity=0.678 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 487
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.01 E-value=0.00061 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
|+|+|++|+||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 488
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.00 E-value=0.00067 Score=48.07 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.|+++|++|+|||||++.+..-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 6899999999999999998754
No 489
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.00 E-value=0.0015 Score=47.12 Aligned_cols=44 Identities=27% Similarity=0.127 Sum_probs=28.8
Q ss_pred ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhh
Q psy15625 136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181 (223)
Q Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 181 (223)
|.++++.|++.+.+..+- .....+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~-~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCP-QVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCH-HHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 678999999987555431 2222211 1223689999999999854
No 490
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00065 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 491
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00066 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 492
>PRK14531 adenylate kinase; Provisional
Probab=97.00 E-value=0.0007 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.+|+++|+|||||||+.++|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998654
No 493
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.99 E-value=0.00068 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00066 Score=50.99 Aligned_cols=23 Identities=48% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 495
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.99 E-value=0.00067 Score=50.64 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
No 496
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00071 Score=49.08 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998753
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00068 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 498
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.98 E-value=0.00065 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999987643
No 499
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.98 E-value=0.00071 Score=51.10 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998864
No 500
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.98 E-value=0.00072 Score=47.29 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
Done!