Query psy15625
Match_columns 223
No_of_seqs 133 out of 1473
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 17:30:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.7E-38 3E-42 232.6 18.7 161 11-222 13-173 (216)
2 3tkl_A RAS-related protein RAB 100.0 4.9E-33 1.7E-37 204.4 21.1 168 4-222 9-176 (196)
3 2ew1_A RAS-related protein RAB 100.0 4.5E-33 1.5E-37 205.6 20.2 166 6-222 21-186 (201)
4 2hup_A RAS-related protein RAB 100.0 3.1E-33 1.1E-37 206.6 19.2 168 4-222 22-190 (201)
5 2gf9_A RAS-related protein RAB 100.0 1.3E-32 4.5E-37 201.2 21.9 167 5-222 16-182 (189)
6 2a5j_A RAS-related protein RAB 100.0 8.8E-33 3E-37 202.5 20.8 168 4-222 14-181 (191)
7 2fg5_A RAB-22B, RAS-related pr 100.0 1.1E-32 3.8E-37 202.1 21.3 166 6-222 18-183 (192)
8 1r2q_A RAS-related protein RAB 100.0 1.8E-32 6.1E-37 196.6 21.8 163 9-222 4-166 (170)
9 2bme_A RAB4A, RAS-related prot 100.0 1.2E-32 4.2E-37 200.6 20.8 165 7-222 6-170 (186)
10 2oil_A CATX-8, RAS-related pro 100.0 1.9E-32 6.6E-37 200.9 21.8 167 5-222 19-185 (193)
11 1z08_A RAS-related protein RAB 100.0 8.6E-33 3E-37 198.5 19.5 164 8-222 3-166 (170)
12 1z0f_A RAB14, member RAS oncog 100.0 1.3E-32 4.4E-37 199.1 20.2 167 5-222 9-175 (179)
13 1z0j_A RAB-22, RAS-related pro 100.0 3.1E-32 1.1E-36 195.5 21.9 164 8-222 3-166 (170)
14 2fu5_C RAS-related protein RAB 100.0 3E-33 1E-37 203.4 16.7 164 8-222 5-168 (183)
15 2efe_B Small GTP-binding prote 100.0 2.9E-32 1E-36 197.7 21.6 165 7-222 8-172 (181)
16 1ek0_A Protein (GTP-binding pr 100.0 3.6E-32 1.2E-36 195.1 21.5 162 10-222 2-166 (170)
17 3tw8_B RAS-related protein RAB 100.0 3.2E-32 1.1E-36 197.4 21.3 164 7-222 5-168 (181)
18 2bcg_Y Protein YP2, GTP-bindin 100.0 3.1E-32 1.1E-36 201.8 21.2 165 7-222 4-168 (206)
19 2il1_A RAB12; G-protein, GDP, 100.0 1.4E-32 4.7E-37 201.6 18.4 168 4-222 19-187 (192)
20 1zbd_A Rabphilin-3A; G protein 100.0 3.2E-32 1.1E-36 201.2 20.2 165 7-222 4-168 (203)
21 2y8e_A RAB-protein 6, GH09086P 100.0 5.3E-32 1.8E-36 195.8 21.0 162 10-222 13-174 (179)
22 2o52_A RAS-related protein RAB 100.0 2.1E-32 7.2E-37 201.9 18.9 166 6-222 20-185 (200)
23 3dz8_A RAS-related protein RAB 100.0 3.3E-33 1.1E-37 204.7 13.6 166 6-222 18-183 (191)
24 3kkq_A RAS-related protein M-R 100.0 6E-32 2.1E-36 196.5 20.0 166 6-222 13-179 (183)
25 2g6b_A RAS-related protein RAB 100.0 6.3E-32 2.1E-36 195.8 20.0 167 5-222 4-171 (180)
26 3cpj_B GTP-binding protein YPT 100.0 6.1E-32 2.1E-36 202.7 20.5 164 8-222 10-173 (223)
27 3t5g_A GTP-binding protein RHE 100.0 4E-32 1.4E-36 197.1 18.8 164 8-222 3-166 (181)
28 1z2a_A RAS-related protein RAB 100.0 6.3E-32 2.2E-36 193.5 19.1 162 9-222 3-164 (168)
29 3bc1_A RAS-related protein RAB 100.0 6.4E-32 2.2E-36 197.9 19.3 169 3-222 3-182 (195)
30 1g16_A RAS-related protein SEC 100.0 4.5E-32 1.5E-36 194.6 17.9 161 10-222 2-162 (170)
31 2fn4_A P23, RAS-related protei 100.0 1.6E-31 5.5E-36 193.6 20.8 166 6-222 4-169 (181)
32 2hxs_A RAB-26, RAS-related pro 100.0 5.5E-32 1.9E-36 195.8 18.2 166 9-222 4-170 (178)
33 3cbq_A GTP-binding protein REM 100.0 3.3E-32 1.1E-36 200.1 16.7 169 4-222 16-185 (195)
34 2p5s_A RAS and EF-hand domain 100.0 5.8E-32 2E-36 199.4 17.2 165 7-222 24-194 (199)
35 1z06_A RAS-related protein RAB 100.0 1E-31 3.5E-36 196.5 18.4 166 7-222 16-185 (189)
36 3c5c_A RAS-like protein 12; GD 100.0 1.1E-31 3.7E-36 196.1 18.5 165 8-222 18-183 (187)
37 3q3j_B RHO-related GTP-binding 100.0 1.1E-31 3.7E-36 200.1 18.7 164 6-222 22-200 (214)
38 3q85_A GTP-binding protein REM 100.0 1.5E-31 5.2E-36 191.8 17.8 162 11-222 2-164 (169)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.2E-31 7.6E-36 192.4 18.6 168 7-222 3-171 (177)
40 3l0i_B RAS-related protein RAB 100.0 1.7E-33 6E-38 207.5 7.3 169 3-222 25-193 (199)
41 2f7s_A C25KG, RAS-related prot 100.0 1.5E-31 5.2E-36 199.6 17.7 167 5-222 19-196 (217)
42 2nzj_A GTP-binding protein REM 100.0 2.4E-31 8.2E-36 191.8 18.2 163 9-222 2-166 (175)
43 3oes_A GTPase rhebl1; small GT 100.0 1.5E-31 5E-36 197.5 17.4 165 7-222 20-184 (201)
44 2atx_A Small GTP binding prote 100.0 3.8E-31 1.3E-35 194.1 19.3 167 3-222 10-190 (194)
45 3reg_A RHO-like small GTPase; 100.0 6.4E-31 2.2E-35 192.9 20.4 163 7-222 19-185 (194)
46 1c1y_A RAS-related protein RAP 100.0 5E-31 1.7E-35 188.6 18.9 162 10-222 2-164 (167)
47 1x3s_A RAS-related protein RAB 100.0 1.1E-30 3.7E-35 191.6 20.8 162 9-222 13-175 (195)
48 1kao_A RAP2A; GTP-binding prot 100.0 4.8E-31 1.7E-35 188.5 18.2 162 10-222 2-163 (167)
49 3cph_A RAS-related protein SEC 100.0 5.3E-31 1.8E-35 196.0 19.0 164 7-222 16-179 (213)
50 1m7b_A RND3/RHOE small GTP-bin 100.0 4.8E-31 1.6E-35 192.1 18.1 162 8-222 4-180 (184)
51 1u8z_A RAS-related protein RAL 100.0 8.3E-31 2.9E-35 187.5 19.1 162 10-222 3-164 (168)
52 3q72_A GTP-binding protein RAD 100.0 5.2E-31 1.8E-35 188.5 17.3 160 11-222 2-161 (166)
53 2iwr_A Centaurin gamma 1; ANK 100.0 1.2E-30 4.1E-35 188.8 19.4 159 9-222 5-166 (178)
54 3clv_A RAB5 protein, putative; 100.0 1.3E-30 4.4E-35 192.5 19.8 161 8-222 4-201 (208)
55 1gwn_A RHO-related GTP-binding 100.0 6.8E-31 2.3E-35 194.5 17.9 163 7-222 24-201 (205)
56 2atv_A RERG, RAS-like estrogen 100.0 1E-30 3.4E-35 192.3 18.7 165 6-222 23-188 (196)
57 3ihw_A Centg3; RAS, centaurin, 100.0 1.9E-30 6.5E-35 189.0 19.7 160 6-222 15-177 (184)
58 2a9k_A RAS-related protein RAL 100.0 1.9E-30 6.3E-35 189.0 19.5 165 7-222 14-178 (187)
59 2g3y_A GTP-binding protein GEM 100.0 8.9E-31 3.1E-35 194.3 18.1 165 7-222 33-200 (211)
60 1vg8_A RAS-related protein RAB 100.0 1.2E-30 4.1E-35 193.3 18.5 167 8-222 5-172 (207)
61 2bov_A RAla, RAS-related prote 100.0 2.2E-30 7.5E-35 191.6 19.6 164 8-222 11-174 (206)
62 1ky3_A GTP-binding protein YPT 100.0 8.2E-31 2.8E-35 190.1 16.5 169 7-222 4-175 (182)
63 2erx_A GTP-binding protein DI- 100.0 2.3E-30 7.9E-35 185.9 18.4 163 10-222 2-164 (172)
64 2q3h_A RAS homolog gene family 100.0 3.2E-30 1.1E-34 190.2 19.7 163 7-222 16-192 (201)
65 2gco_A H9, RHO-related GTP-bin 100.0 4E-30 1.4E-34 189.8 20.0 164 6-222 20-197 (201)
66 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-30 3.9E-35 194.2 17.0 162 8-222 6-177 (212)
67 2yc2_C IFT27, small RAB-relate 100.0 2E-31 6.7E-36 197.5 12.4 163 9-222 18-189 (208)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 8E-30 2.7E-34 185.5 20.7 160 10-222 4-177 (186)
69 2fv8_A H6, RHO-related GTP-bin 100.0 9.6E-30 3.3E-34 188.6 20.2 163 7-222 21-197 (207)
70 4dsu_A GTPase KRAS, isoform 2B 100.0 1E-29 3.5E-34 185.4 20.0 162 9-222 2-163 (189)
71 4djt_A GTP-binding nuclear pro 100.0 6.9E-31 2.4E-35 196.2 13.7 165 7-222 7-172 (218)
72 2j1l_A RHO-related GTP-binding 100.0 4E-30 1.4E-34 191.6 17.8 161 9-222 32-206 (214)
73 3gj0_A GTP-binding nuclear pro 100.0 1.2E-30 4E-35 195.4 13.6 166 3-222 7-172 (221)
74 4gzl_A RAS-related C3 botulinu 100.0 1.4E-29 4.7E-34 187.4 18.4 161 9-222 28-202 (204)
75 3t1o_A Gliding protein MGLA; G 100.0 5.3E-30 1.8E-34 188.2 15.9 170 5-222 8-189 (198)
76 2cjw_A GTP-binding protein GEM 100.0 2.6E-29 8.9E-34 184.2 19.2 163 9-222 4-169 (192)
77 3bwd_D RAC-like GTP-binding pr 100.0 1.2E-30 4.2E-35 189.3 11.6 161 9-222 6-178 (182)
78 1oix_A RAS-related protein RAB 100.0 9.7E-29 3.3E-33 181.0 21.6 170 2-222 20-189 (191)
79 2gf0_A GTP-binding protein DI- 100.0 1.5E-29 5.2E-34 186.1 17.2 164 8-222 5-168 (199)
80 3con_A GTPase NRAS; structural 100.0 4.6E-29 1.6E-33 182.4 19.3 161 10-222 20-180 (190)
81 2ce2_X GTPase HRAS; signaling 100.0 4.9E-29 1.7E-33 177.8 18.8 160 11-222 3-162 (166)
82 2f9l_A RAB11B, member RAS onco 100.0 1E-28 3.5E-33 181.9 21.0 164 8-222 2-165 (199)
83 4bas_A ADP-ribosylation factor 100.0 2.7E-29 9.3E-34 184.8 13.2 166 6-222 12-186 (199)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.4E-28 4.7E-33 181.2 16.8 157 9-222 23-196 (198)
85 1m2o_B GTP-binding protein SAR 100.0 4.5E-28 1.5E-32 177.3 18.2 157 9-222 21-189 (190)
86 1zd9_A ADP-ribosylation factor 100.0 3.9E-28 1.3E-32 177.3 16.9 158 9-222 20-182 (188)
87 2h57_A ADP-ribosylation factor 100.0 5.5E-28 1.9E-32 176.7 16.9 161 8-222 18-184 (190)
88 2h17_A ADP-ribosylation factor 100.0 4.4E-28 1.5E-32 175.9 15.6 159 7-222 17-180 (181)
89 1upt_A ARL1, ADP-ribosylation 100.0 2.2E-28 7.5E-33 175.6 13.8 157 9-222 5-166 (171)
90 1r8s_A ADP-ribosylation factor 100.0 5.3E-29 1.8E-33 177.7 10.4 154 12-222 1-159 (164)
91 1ksh_A ARF-like protein 2; sma 100.0 1E-27 3.4E-32 174.6 17.3 157 9-222 16-177 (186)
92 1zj6_A ADP-ribosylation factor 100.0 8.1E-28 2.8E-32 175.4 16.2 157 9-222 14-175 (187)
93 2b6h_A ADP-ribosylation factor 100.0 2.1E-28 7.2E-33 179.3 12.3 158 8-222 26-188 (192)
94 1fzq_A ADP-ribosylation factor 100.0 8.5E-28 2.9E-32 174.5 15.3 157 9-222 14-175 (181)
95 3llu_A RAS-related GTP-binding 100.0 2.5E-28 8.6E-33 179.5 11.7 161 6-222 15-194 (196)
96 2zej_A Dardarin, leucine-rich 100.0 1.1E-28 3.7E-33 179.6 9.0 160 11-222 2-175 (184)
97 2wkq_A NPH1-1, RAS-related C3 100.0 6.9E-27 2.4E-31 184.9 20.0 161 9-222 153-327 (332)
98 2x77_A ADP-ribosylation factor 100.0 2.9E-28 9.9E-33 178.0 9.8 157 9-222 20-181 (189)
99 2wji_A Ferrous iron transport 100.0 4.1E-27 1.4E-31 168.4 15.5 152 11-222 3-162 (165)
100 3th5_A RAS-related C3 botulinu 99.9 4.8E-30 1.7E-34 189.7 0.0 161 9-222 28-202 (204)
101 1moz_A ARL1, ADP-ribosylation 99.9 3.9E-27 1.3E-31 171.0 14.4 157 9-222 16-177 (183)
102 2fh5_B SR-beta, signal recogni 99.9 5.6E-27 1.9E-31 174.4 11.2 162 9-223 5-214 (214)
103 3c5h_A Glucocorticoid receptor 99.9 1.1E-27 3.7E-32 182.9 7.1 166 5-222 13-252 (255)
104 2lkc_A Translation initiation 99.9 2.1E-26 7.3E-31 166.3 12.9 155 8-222 5-168 (178)
105 3a1s_A Iron(II) transport prot 99.9 9.8E-26 3.3E-30 172.1 16.7 154 9-222 3-164 (258)
106 2qu8_A Putative nucleolar GTP- 99.9 1.1E-25 3.9E-30 169.1 16.9 162 9-222 27-202 (228)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 8E-26 2.8E-30 176.9 16.5 160 10-222 2-178 (307)
108 2wjg_A FEOB, ferrous iron tran 99.9 1.5E-25 5E-30 163.4 16.0 153 10-222 6-166 (188)
109 3iby_A Ferrous iron transport 99.9 5.7E-26 1.9E-30 173.2 13.1 151 12-222 2-164 (256)
110 1svi_A GTP-binding protein YSX 99.9 2.5E-26 8.5E-31 168.4 10.6 161 4-222 16-192 (195)
111 3b1v_A Ferrous iron uptake tra 99.9 4.2E-26 1.4E-30 175.2 11.7 152 10-222 2-161 (272)
112 2gj8_A MNME, tRNA modification 99.9 1.5E-25 5E-30 161.4 13.2 152 10-222 3-163 (172)
113 3o47_A ADP-ribosylation factor 99.9 1.9E-25 6.3E-30 176.3 14.6 156 10-222 164-324 (329)
114 3lvq_E ARF-GAP with SH3 domain 99.9 8.3E-25 2.8E-29 181.9 18.1 157 9-222 320-481 (497)
115 2dyk_A GTP-binding protein; GT 99.9 6.5E-25 2.2E-29 155.8 14.0 149 12-222 2-159 (161)
116 3iev_A GTP-binding protein ERA 99.9 1.3E-24 4.4E-29 170.1 16.9 162 6-222 5-179 (308)
117 3i8s_A Ferrous iron transport 99.9 2.4E-25 8.3E-30 171.5 11.9 152 11-222 3-166 (274)
118 3dpu_A RAB family protein; roc 99.9 7.4E-26 2.5E-30 189.6 8.8 160 8-222 38-205 (535)
119 3r7w_B Gtpase2, GTP-binding pr 99.9 7.9E-26 2.7E-30 175.7 8.1 154 13-222 1-171 (331)
120 3k53_A Ferrous iron transport 99.9 1.7E-24 5.7E-29 166.8 14.7 153 11-222 3-163 (271)
121 2cxx_A Probable GTP-binding pr 99.9 1.2E-25 4.1E-30 164.0 7.9 160 12-222 2-181 (190)
122 3pqc_A Probable GTP-binding pr 99.9 3.7E-24 1.3E-28 156.6 13.3 160 4-222 16-191 (195)
123 4dhe_A Probable GTP-binding pr 99.9 1.5E-24 5.3E-29 162.2 9.4 167 4-222 22-208 (223)
124 1nrj_B SR-beta, signal recogni 99.9 3.2E-25 1.1E-29 165.4 5.4 155 1-211 2-170 (218)
125 3qq5_A Small GTP-binding prote 99.9 8E-25 2.7E-29 177.0 7.0 162 1-222 24-193 (423)
126 1wf3_A GTP-binding protein; GT 99.9 5.8E-23 2E-27 159.9 12.4 155 9-222 5-170 (301)
127 2hjg_A GTP-binding protein ENG 99.9 4.1E-23 1.4E-27 168.9 11.5 157 9-222 173-346 (436)
128 3gee_A MNME, tRNA modification 99.9 1.8E-22 6.1E-27 165.8 14.3 155 10-222 232-395 (476)
129 4dcu_A GTP-binding protein ENG 99.9 9E-23 3.1E-27 167.8 12.1 158 8-222 192-366 (456)
130 2e87_A Hypothetical protein PH 99.9 4.2E-22 1.4E-26 159.0 15.3 158 9-222 165-333 (357)
131 1lnz_A SPO0B-associated GTP-bi 99.9 6.3E-23 2.1E-27 162.0 9.2 156 13-222 160-327 (342)
132 1mky_A Probable GTP-binding pr 99.9 1.2E-21 4.1E-26 160.4 14.5 149 12-221 2-162 (439)
133 1xzp_A Probable tRNA modificat 99.9 7.2E-22 2.4E-26 162.4 12.4 150 11-222 243-402 (482)
134 2xtp_A GTPase IMAP family memb 99.9 1.4E-21 4.7E-26 149.6 10.8 161 7-222 18-205 (260)
135 3lxx_A GTPase IMAP family memb 99.9 2.2E-21 7.6E-26 146.7 11.5 163 6-221 24-210 (239)
136 1ega_A Protein (GTP-binding pr 99.9 2.2E-21 7.6E-26 151.2 11.8 156 9-222 6-172 (301)
137 3sjy_A Translation initiation 99.9 3.9E-20 1.3E-24 149.8 18.5 162 6-221 3-188 (403)
138 2hjg_A GTP-binding protein ENG 99.9 8.3E-22 2.8E-26 161.2 8.4 150 12-222 4-162 (436)
139 3cb4_D GTP-binding protein LEP 99.9 9.9E-21 3.4E-25 159.0 15.0 156 10-222 3-179 (599)
140 3geh_A MNME, tRNA modification 99.9 9.8E-22 3.4E-26 160.9 8.6 150 10-222 223-381 (462)
141 3lxw_A GTPase IMAP family memb 99.9 1.1E-20 3.9E-25 143.3 13.5 165 8-222 18-205 (247)
142 3t5d_A Septin-7; GTP-binding p 99.8 3.2E-21 1.1E-25 148.6 10.3 180 9-222 6-201 (274)
143 2ywe_A GTP-binding protein LEP 99.8 2.2E-20 7.4E-25 156.7 16.0 157 9-222 4-181 (600)
144 3izy_P Translation initiation 99.8 8.2E-23 2.8E-27 169.3 1.4 157 10-222 3-165 (537)
145 1mky_A Probable GTP-binding pr 99.8 1.2E-20 4.1E-25 154.4 13.6 157 9-222 178-352 (439)
146 1wb1_A Translation elongation 99.8 5.1E-21 1.7E-25 157.9 10.6 156 10-222 18-186 (482)
147 2qtf_A Protein HFLX, GTP-bindi 99.8 3.2E-20 1.1E-24 147.9 14.8 157 13-222 181-351 (364)
148 1s0u_A EIF-2-gamma, translatio 99.8 3.2E-20 1.1E-24 150.5 14.8 161 7-221 4-194 (408)
149 3tr5_A RF-3, peptide chain rel 99.8 6.1E-21 2.1E-25 158.6 10.4 96 8-103 10-125 (528)
150 1cip_A Protein (guanine nucleo 99.8 2.4E-20 8.3E-25 147.7 12.7 114 59-222 192-341 (353)
151 1kk1_A EIF2gamma; initiation o 99.8 3.8E-20 1.3E-24 150.3 14.0 162 6-221 5-196 (410)
152 3j2k_7 ERF3, eukaryotic polype 99.8 1E-19 3.5E-24 148.6 14.6 160 7-217 13-217 (439)
153 3p26_A Elongation factor 1 alp 99.8 7.8E-21 2.7E-25 157.2 8.0 157 9-214 31-227 (483)
154 2qag_A Septin-2, protein NEDD5 99.8 2.2E-21 7.4E-26 154.8 4.2 173 9-221 35-229 (361)
155 1d2e_A Elongation factor TU (E 99.8 3.9E-20 1.3E-24 149.5 10.7 157 10-221 2-191 (397)
156 1g7s_A Translation initiation 99.8 1.4E-19 4.9E-24 152.1 14.0 88 10-97 4-107 (594)
157 2c78_A Elongation factor TU-A; 99.8 2.3E-20 7.8E-25 151.3 8.8 159 8-221 8-208 (405)
158 4dcu_A GTP-binding protein ENG 99.8 1.2E-20 4E-25 155.2 6.8 150 11-221 23-181 (456)
159 2ged_A SR-beta, signal recogni 99.8 5.4E-20 1.8E-24 134.4 9.1 93 8-109 45-145 (193)
160 2elf_A Protein translation elo 99.8 5.4E-20 1.8E-24 146.9 9.8 143 13-222 23-177 (370)
161 1zun_B Sulfate adenylate trans 99.8 1.4E-19 4.7E-24 147.9 12.0 155 7-215 20-214 (434)
162 1zo1_I IF2, translation initia 99.8 1.7E-21 6E-26 160.1 0.5 155 10-221 3-163 (501)
163 2xtz_A Guanine nucleotide-bind 99.8 4.7E-19 1.6E-23 140.3 14.4 115 58-222 181-342 (354)
164 1jny_A EF-1-alpha, elongation 99.8 2E-20 6.8E-25 152.9 6.7 160 8-215 3-203 (435)
165 3ohm_A Guanine nucleotide-bind 99.8 2.6E-19 9E-24 139.8 11.9 115 58-222 165-315 (327)
166 1zcb_A G alpha I/13; GTP-bindi 99.8 1.2E-18 4.2E-23 138.4 15.3 114 59-222 200-350 (362)
167 2aka_B Dynamin-1; fusion prote 99.8 7.3E-20 2.5E-24 142.7 6.0 56 166-221 191-249 (299)
168 3izq_1 HBS1P, elongation facto 99.8 6.1E-20 2.1E-24 155.1 5.8 157 9-215 165-362 (611)
169 1pui_A ENGB, probable GTP-bind 99.8 5E-19 1.7E-23 130.9 9.7 157 8-222 23-196 (210)
170 3mca_A HBS1, elongation factor 99.8 5.2E-20 1.8E-24 155.1 4.4 90 7-96 173-291 (592)
171 1r5b_A Eukaryotic peptide chai 99.8 3.7E-20 1.3E-24 152.4 2.6 158 8-216 40-243 (467)
172 3avx_A Elongation factor TS, e 99.8 4.7E-19 1.6E-23 155.9 9.5 159 8-221 293-482 (1289)
173 2dy1_A Elongation factor G; tr 99.8 4.2E-18 1.4E-22 145.5 14.4 93 7-99 5-113 (665)
174 1f60_A Elongation factor EEF1A 99.8 1.7E-19 5.9E-24 148.1 5.6 155 9-214 5-201 (458)
175 1udx_A The GTP-binding protein 99.8 3.7E-18 1.3E-22 137.7 12.9 157 13-222 159-322 (416)
176 1wxq_A GTP-binding protein; st 99.8 5.8E-19 2E-23 142.1 7.5 99 12-110 1-139 (397)
177 3def_A T7I23.11 protein; chlor 99.8 1.4E-17 4.8E-22 127.4 13.8 86 10-97 35-130 (262)
178 4fid_A G protein alpha subunit 99.8 2.7E-18 9.1E-23 134.7 9.7 118 55-222 156-325 (340)
179 1dar_A EF-G, elongation factor 99.7 1.3E-17 4.6E-22 142.9 14.0 98 8-105 9-122 (691)
180 2h5e_A Peptide chain release f 99.7 8.7E-18 3E-22 139.8 12.3 98 1-98 1-120 (529)
181 2j69_A Bacterial dynamin-like 99.7 3.5E-17 1.2E-21 140.4 14.5 31 9-39 67-97 (695)
182 1h65_A Chloroplast outer envel 99.7 1.6E-17 5.3E-22 127.7 11.1 86 9-95 37-131 (270)
183 3t34_A Dynamin-related protein 99.7 2.6E-18 8.7E-23 137.3 6.5 59 159-217 195-253 (360)
184 2qnr_A Septin-2, protein NEDD5 99.7 2E-18 6.8E-23 134.4 5.0 178 8-221 15-210 (301)
185 1jwy_B Dynamin A GTPase domain 99.7 2.3E-17 8E-22 129.4 9.7 28 9-36 22-49 (315)
186 1jal_A YCHF protein; nucleotid 99.7 2.7E-16 9.3E-21 124.3 14.8 187 12-208 3-240 (363)
187 2qag_C Septin-7; cell cycle, c 99.7 1.8E-17 6E-22 133.9 8.2 182 8-221 28-223 (418)
188 2rdo_7 EF-G, elongation factor 99.7 7E-16 2.4E-20 132.5 16.6 96 8-103 7-125 (704)
189 2xex_A Elongation factor G; GT 99.7 2.5E-16 8.6E-21 135.1 13.6 98 8-105 7-120 (693)
190 2wsm_A Hydrogenase expression/ 99.7 1.5E-16 5.2E-21 118.5 9.0 56 167-222 154-211 (221)
191 1u0l_A Probable GTPase ENGC; p 99.7 3.8E-17 1.3E-21 127.3 5.8 133 26-220 32-168 (301)
192 4a9a_A Ribosome-interacting GT 99.7 1.3E-15 4.3E-20 121.2 14.1 193 11-221 72-296 (376)
193 2dby_A GTP-binding protein; GD 99.7 6.1E-18 2.1E-22 134.5 -0.6 84 12-95 2-111 (368)
194 2x2e_A Dynamin-1; nitration, h 99.7 2.3E-17 7.9E-22 131.4 2.5 57 165-221 195-254 (353)
195 3p32_A Probable GTPase RV1496/ 99.6 1.4E-16 5E-21 126.8 5.7 56 167-222 217-281 (355)
196 2hf9_A Probable hydrogenase ni 99.6 3.9E-15 1.3E-19 111.2 12.0 56 167-222 164-221 (226)
197 1azs_C GS-alpha; complex (lyas 99.6 4.8E-15 1.6E-19 118.7 12.2 114 59-222 216-382 (402)
198 3vqt_A RF-3, peptide chain rel 99.6 6.5E-15 2.2E-19 123.1 12.5 96 10-105 30-145 (548)
199 1n0u_A EF-2, elongation factor 99.6 2E-14 6.7E-19 125.8 14.4 95 9-103 17-141 (842)
200 2ohf_A Protein OLA1, GTP-bindi 99.6 1.1E-14 3.8E-19 116.2 10.1 88 11-98 22-131 (396)
201 2www_A Methylmalonic aciduria 99.6 8.5E-15 2.9E-19 116.2 8.4 55 167-222 212-276 (349)
202 2qpt_A EH domain-containing pr 99.5 1.8E-14 6.2E-19 120.5 9.7 31 7-37 61-91 (550)
203 2p67_A LAO/AO transport system 99.5 2.2E-15 7.6E-20 119.3 3.9 55 167-221 194-257 (341)
204 3j25_A Tetracycline resistance 99.5 1.7E-14 5.9E-19 122.8 5.3 92 12-103 3-110 (638)
205 1yrb_A ATP(GTP)binding protein 99.5 3.7E-13 1.3E-17 102.7 10.2 24 199-222 231-254 (262)
206 4fn5_A EF-G 1, elongation fact 99.4 3.6E-12 1.2E-16 109.9 16.3 98 8-105 10-130 (709)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 5.3E-13 1.8E-17 106.8 10.2 85 11-95 20-127 (392)
208 3zvr_A Dynamin-1; hydrolase, D 99.4 2.6E-13 9E-18 116.2 8.1 84 133-221 186-274 (772)
209 2qm8_A GTPase/ATPase; G protei 99.4 1.5E-13 5.2E-18 108.5 5.8 55 168-222 194-258 (337)
210 2yv5_A YJEQ protein; hydrolase 99.4 4.5E-12 1.5E-16 98.6 10.2 110 57-220 47-164 (302)
211 3l82_B F-box only protein 4; T 99.1 1.6E-10 5.6E-15 83.6 7.6 105 68-222 110-220 (227)
212 3ec1_A YQEH GTPase; atnos1, at 99.1 1.3E-10 4.4E-15 92.8 6.7 149 12-211 163-317 (369)
213 3h2y_A GTPase family protein; 99.1 5.3E-11 1.8E-15 95.0 3.2 58 12-72 161-223 (368)
214 2j37_W Signal recognition part 98.9 7.2E-10 2.5E-14 91.4 5.2 24 9-32 99-122 (504)
215 3l2o_B F-box only protein 4; s 98.9 1.5E-09 5E-14 82.4 6.3 106 67-222 194-305 (312)
216 2qag_B Septin-6, protein NEDD5 98.9 3.7E-09 1.3E-13 85.3 8.8 60 12-71 43-106 (427)
217 3sop_A Neuronal-specific septi 98.9 1E-08 3.5E-13 78.3 9.0 27 11-37 2-28 (270)
218 1tq4_A IIGP1, interferon-induc 98.8 1.3E-07 4.3E-12 76.3 15.2 26 10-35 68-93 (413)
219 3h2y_A GTPase family protein; 98.8 1.6E-08 5.4E-13 80.7 7.6 54 167-221 96-156 (368)
220 1puj_A YLQF, conserved hypothe 98.7 1.2E-08 4E-13 78.5 5.1 59 9-71 118-176 (282)
221 3cnl_A YLQF, putative uncharac 98.6 1.1E-08 3.8E-13 77.8 2.6 57 12-72 100-156 (262)
222 3ec1_A YQEH GTPase; atnos1, at 98.6 6.4E-08 2.2E-12 77.3 7.1 54 167-221 98-158 (369)
223 1puj_A YLQF, conserved hypothe 98.5 2.4E-07 8.3E-12 71.2 6.0 81 131-221 20-102 (282)
224 1f5n_A Interferon-induced guan 98.4 2.1E-07 7E-12 78.2 4.7 65 8-72 35-103 (592)
225 3dm5_A SRP54, signal recogniti 98.4 3.7E-06 1.3E-10 68.2 11.5 68 134-213 212-279 (443)
226 2v3c_C SRP54, signal recogniti 98.2 2.2E-06 7.6E-11 69.6 5.7 24 11-34 99-122 (432)
227 3kl4_A SRP54, signal recogniti 98.1 1.4E-05 4.7E-10 64.8 9.9 67 134-212 211-277 (433)
228 3cnl_A YLQF, putative uncharac 98.1 2E-06 6.7E-11 65.4 4.7 81 130-221 17-97 (262)
229 1j8m_F SRP54, signal recogniti 98.1 1.4E-05 4.7E-10 61.8 9.3 86 115-213 179-279 (297)
230 3e70_C DPA, signal recognition 97.9 0.00013 4.3E-09 57.2 11.3 68 134-213 241-308 (328)
231 1t9h_A YLOQ, probable GTPase E 97.9 2.6E-06 9.1E-11 66.0 1.8 88 128-218 80-170 (307)
232 3szr_A Interferon-induced GTP- 97.9 1.8E-05 6.2E-10 67.2 6.4 25 13-37 47-71 (608)
233 3q5d_A Atlastin-1; G protein, 97.8 3.5E-05 1.2E-09 62.7 6.5 27 8-34 64-90 (447)
234 2rcn_A Probable GTPase ENGC; Y 97.7 0.0001 3.5E-09 58.2 6.9 85 131-219 127-213 (358)
235 1ye8_A Protein THEP1, hypothet 97.7 2.9E-05 9.9E-10 55.4 3.3 23 13-35 2-24 (178)
236 1bif_A 6-phosphofructo-2-kinas 97.6 2.3E-06 7.8E-11 70.5 -3.1 102 9-112 37-148 (469)
237 1t9h_A YLOQ, probable GTPase E 97.6 2.5E-05 8.5E-10 60.5 2.1 25 12-36 174-198 (307)
238 1kgd_A CASK, peripheral plasma 97.5 4.8E-05 1.6E-09 54.2 3.1 22 13-34 7-28 (180)
239 1zp6_A Hypothetical protein AT 97.5 5E-05 1.7E-09 54.5 3.2 24 11-34 9-32 (191)
240 2rcn_A Probable GTPase ENGC; Y 97.5 7.2E-05 2.5E-09 59.1 4.0 24 13-36 217-240 (358)
241 1lvg_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 54.7 3.1 23 12-34 5-27 (198)
242 2yv5_A YJEQ protein; hydrolase 97.4 0.00027 9.2E-09 54.7 6.4 24 12-36 166-189 (302)
243 3tr0_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 54.1 3.1 22 13-34 9-30 (205)
244 3a00_A Guanylate kinase, GMP k 97.4 7.8E-05 2.7E-09 53.4 3.0 22 14-35 4-25 (186)
245 3ney_A 55 kDa erythrocyte memb 97.4 0.0001 3.5E-09 53.2 3.3 24 11-34 19-42 (197)
246 1zu4_A FTSY; GTPase, signal re 97.4 0.0042 1.4E-07 48.4 12.6 26 10-35 104-129 (320)
247 1znw_A Guanylate kinase, GMP k 97.4 9.6E-05 3.3E-09 53.9 3.0 24 12-35 21-44 (207)
248 3c8u_A Fructokinase; YP_612366 97.4 0.00011 3.8E-09 53.6 3.3 27 9-35 20-46 (208)
249 1z6g_A Guanylate kinase; struc 97.3 0.00011 3.8E-09 54.1 3.0 23 13-35 25-47 (218)
250 1s96_A Guanylate kinase, GMP k 97.3 0.00012 3.9E-09 54.0 3.1 24 12-35 17-40 (219)
251 3tau_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 53.1 3.4 26 10-35 7-32 (208)
252 4gp7_A Metallophosphoesterase; 97.3 0.00011 3.7E-09 52.0 2.7 21 12-32 10-30 (171)
253 3asz_A Uridine kinase; cytidin 97.3 0.00015 5.2E-09 52.8 3.3 25 10-34 5-29 (211)
254 1kag_A SKI, shikimate kinase I 97.3 0.00015 5.2E-09 51.0 3.1 22 13-34 6-27 (173)
255 1htw_A HI0065; nucleotide-bind 97.2 0.00017 5.8E-09 50.3 3.0 24 12-35 34-57 (158)
256 3tif_A Uncharacterized ABC tra 97.2 0.00016 5.3E-09 53.9 2.9 23 13-35 33-55 (235)
257 2bdt_A BH3686; alpha-beta prot 97.2 0.00018 6.1E-09 51.5 3.0 21 13-33 4-24 (189)
258 2j41_A Guanylate kinase; GMP, 97.2 0.00018 6.2E-09 52.1 3.0 25 11-35 6-30 (207)
259 2i3b_A HCR-ntpase, human cance 97.2 0.00017 5.9E-09 51.8 2.8 23 13-35 3-25 (189)
260 4eun_A Thermoresistant glucoki 97.2 0.0002 6.9E-09 51.8 3.1 24 11-34 29-52 (200)
261 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.9E-09 52.0 3.1 24 12-35 13-36 (204)
262 2grj_A Dephospho-COA kinase; T 97.2 0.00027 9.3E-09 50.9 3.7 34 1-34 1-35 (192)
263 1ex7_A Guanylate kinase; subst 97.2 0.00021 7.3E-09 51.2 3.1 21 14-34 4-24 (186)
264 3kb2_A SPBC2 prophage-derived 97.2 0.00023 7.7E-09 50.0 3.2 22 13-34 3-24 (173)
265 2pcj_A ABC transporter, lipopr 97.2 0.00018 6.3E-09 53.1 2.8 23 13-35 32-54 (224)
266 1knq_A Gluconate kinase; ALFA/ 97.2 0.00027 9.3E-09 49.8 3.6 24 11-34 8-31 (175)
267 2onk_A Molybdate/tungstate ABC 97.2 0.00022 7.6E-09 53.3 3.1 23 13-35 26-48 (240)
268 2bbw_A Adenylate kinase 4, AK4 97.2 0.00025 8.5E-09 53.1 3.3 22 11-32 27-48 (246)
269 1ly1_A Polynucleotide kinase; 97.1 0.00029 1E-08 49.8 3.5 22 12-33 3-24 (181)
270 3lw7_A Adenylate kinase relate 97.1 0.00024 8.1E-09 49.9 2.9 19 13-31 3-21 (179)
271 1sgw_A Putative ABC transporte 97.1 0.00024 8.1E-09 52.1 3.0 23 13-35 37-59 (214)
272 2cbz_A Multidrug resistance-as 97.1 0.00025 8.7E-09 52.8 3.1 23 13-35 33-55 (237)
273 3aez_A Pantothenate kinase; tr 97.1 0.00041 1.4E-08 53.9 4.4 28 8-35 87-114 (312)
274 2v9p_A Replication protein E1; 97.1 0.00026 9E-09 54.7 3.2 24 12-35 127-150 (305)
275 3gfo_A Cobalt import ATP-bindi 97.1 0.00024 8.1E-09 54.2 3.0 23 13-35 36-58 (275)
276 1b0u_A Histidine permease; ABC 97.1 0.00024 8.3E-09 53.8 3.0 23 13-35 34-56 (262)
277 1jjv_A Dephospho-COA kinase; P 97.1 0.00033 1.1E-08 50.9 3.5 22 12-33 3-24 (206)
278 2if2_A Dephospho-COA kinase; a 97.1 0.00029 9.9E-09 51.0 3.2 22 12-33 2-23 (204)
279 3b85_A Phosphate starvation-in 97.1 0.00025 8.4E-09 51.8 2.8 22 13-34 24-45 (208)
280 1mv5_A LMRA, multidrug resista 97.1 0.00028 9.7E-09 52.8 3.2 23 13-35 30-52 (243)
281 2ff7_A Alpha-hemolysin translo 97.1 0.00028 9.5E-09 53.0 3.1 23 13-35 37-59 (247)
282 1g6h_A High-affinity branched- 97.1 0.00026 9E-09 53.4 2.9 23 13-35 35-57 (257)
283 2pze_A Cystic fibrosis transme 97.1 0.00031 1E-08 52.1 3.2 23 13-35 36-58 (229)
284 2eyu_A Twitching motility prot 97.1 0.00032 1.1E-08 53.1 3.3 24 11-34 25-48 (261)
285 1cke_A CK, MSSA, protein (cyti 97.1 0.00032 1.1E-08 51.6 3.3 23 12-34 6-28 (227)
286 4g1u_C Hemin import ATP-bindin 97.1 0.00029 1E-08 53.4 3.1 23 13-35 39-61 (266)
287 3vaa_A Shikimate kinase, SK; s 97.1 0.00035 1.2E-08 50.5 3.3 23 12-34 26-48 (199)
288 3t61_A Gluconokinase; PSI-biol 97.1 0.00031 1.1E-08 50.8 3.0 23 12-34 19-41 (202)
289 2olj_A Amino acid ABC transpor 97.1 0.00033 1.1E-08 53.1 3.2 23 13-35 52-74 (263)
290 2xxa_A Signal recognition part 97.1 0.0051 1.8E-07 49.9 10.4 25 10-34 99-123 (433)
291 1ji0_A ABC transporter; ATP bi 97.1 0.0003 1E-08 52.6 2.9 23 13-35 34-56 (240)
292 1np6_A Molybdopterin-guanine d 97.1 0.00035 1.2E-08 49.5 3.1 23 12-34 7-29 (174)
293 3cm0_A Adenylate kinase; ATP-b 97.0 0.00046 1.6E-08 49.1 3.8 23 11-33 4-26 (186)
294 2qi9_C Vitamin B12 import ATP- 97.0 0.00035 1.2E-08 52.5 3.2 23 13-35 28-50 (249)
295 2ghi_A Transport protein; mult 97.0 0.00034 1.1E-08 53.0 3.1 22 13-34 48-69 (260)
296 1via_A Shikimate kinase; struc 97.0 0.00032 1.1E-08 49.5 2.9 22 13-34 6-27 (175)
297 1vpl_A ABC transporter, ATP-bi 97.0 0.00035 1.2E-08 52.7 3.2 23 13-35 43-65 (256)
298 1u0l_A Probable GTPase ENGC; p 97.0 0.00035 1.2E-08 54.1 3.2 25 13-37 171-195 (301)
299 3uie_A Adenylyl-sulfate kinase 97.0 0.00044 1.5E-08 50.0 3.6 27 9-35 23-49 (200)
300 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00038 1.3E-08 52.4 3.3 22 13-34 31-52 (250)
301 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 50.9 3.3 21 13-33 2-22 (216)
302 2qt1_A Nicotinamide riboside k 97.0 0.00046 1.6E-08 50.1 3.7 24 11-34 21-44 (207)
303 3ec2_A DNA replication protein 97.0 0.00032 1.1E-08 49.8 2.8 25 11-35 38-62 (180)
304 2zu0_C Probable ATP-dependent 97.0 0.00039 1.3E-08 52.8 3.4 22 13-34 48-69 (267)
305 2ihy_A ABC transporter, ATP-bi 97.0 0.00036 1.2E-08 53.3 3.2 23 13-35 49-71 (279)
306 4dzz_A Plasmid partitioning pr 97.0 0.0027 9.1E-08 45.8 7.8 82 116-202 75-162 (206)
307 2ixe_A Antigen peptide transpo 97.0 0.00037 1.3E-08 53.1 3.1 23 13-35 47-69 (271)
308 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.4E-09 52.9 1.8 22 13-34 29-51 (231)
309 3dl0_A Adenylate kinase; phosp 97.0 0.00041 1.4E-08 50.7 3.3 21 13-33 2-22 (216)
310 1nks_A Adenylate kinase; therm 97.0 0.00041 1.4E-08 49.6 3.2 22 13-34 3-24 (194)
311 1qhx_A CPT, protein (chloramph 97.0 0.00039 1.4E-08 49.1 3.1 22 13-34 5-26 (178)
312 2jaq_A Deoxyguanosine kinase; 97.0 0.00044 1.5E-08 49.9 3.3 22 13-34 2-23 (205)
313 2f1r_A Molybdopterin-guanine d 97.0 0.00022 7.4E-09 50.4 1.5 23 13-35 4-26 (171)
314 2nq2_C Hypothetical ABC transp 97.0 0.00041 1.4E-08 52.2 3.1 23 13-35 33-55 (253)
315 2jeo_A Uridine-cytidine kinase 97.0 0.00047 1.6E-08 51.6 3.5 25 10-34 24-48 (245)
316 2cdn_A Adenylate kinase; phosp 97.0 0.00048 1.6E-08 49.8 3.4 24 10-33 19-42 (201)
317 3tlx_A Adenylate kinase 2; str 97.0 0.0005 1.7E-08 51.4 3.6 24 10-33 28-51 (243)
318 1y63_A LMAJ004144AAA protein; 97.0 0.00048 1.6E-08 49.1 3.3 24 11-34 10-33 (184)
319 3tqc_A Pantothenate kinase; bi 97.0 0.00062 2.1E-08 53.0 4.1 27 8-34 89-115 (321)
320 1uf9_A TT1252 protein; P-loop, 97.0 0.00051 1.7E-08 49.5 3.5 26 9-34 6-31 (203)
321 1kht_A Adenylate kinase; phosp 97.0 0.00049 1.7E-08 49.1 3.3 22 12-33 4-25 (192)
322 2yz2_A Putative ABC transporte 97.0 0.00043 1.5E-08 52.5 3.1 23 13-35 35-57 (266)
323 2rhm_A Putative kinase; P-loop 97.0 0.00052 1.8E-08 49.1 3.4 23 11-33 5-27 (193)
324 2pjz_A Hypothetical protein ST 97.0 0.00046 1.6E-08 52.3 3.2 23 13-35 32-54 (263)
325 4a74_A DNA repair and recombin 96.9 0.00044 1.5E-08 50.9 2.9 24 12-35 26-49 (231)
326 3trf_A Shikimate kinase, SK; a 96.9 0.0005 1.7E-08 48.9 3.1 24 11-34 5-28 (185)
327 2ehv_A Hypothetical protein PH 96.9 0.00047 1.6E-08 51.4 3.1 22 12-33 31-52 (251)
328 1aky_A Adenylate kinase; ATP:A 96.9 0.00052 1.8E-08 50.4 3.2 23 11-33 4-26 (220)
329 1tev_A UMP-CMP kinase; ploop, 96.9 0.00061 2.1E-08 48.7 3.5 23 11-33 3-25 (196)
330 2kjq_A DNAA-related protein; s 96.9 0.00039 1.3E-08 47.9 2.3 23 13-35 38-60 (149)
331 3nh6_A ATP-binding cassette SU 96.9 0.00035 1.2E-08 54.1 2.2 23 13-35 82-104 (306)
332 1lw7_A Transcriptional regulat 96.9 0.00049 1.7E-08 54.7 3.1 25 11-35 170-194 (365)
333 1nn5_A Similar to deoxythymidy 96.9 0.00059 2E-08 49.7 3.1 25 10-34 8-32 (215)
334 2plr_A DTMP kinase, probable t 96.9 0.00072 2.5E-08 49.1 3.5 24 11-34 4-27 (213)
335 3iij_A Coilin-interacting nucl 96.9 0.00058 2E-08 48.4 2.9 24 11-34 11-34 (180)
336 1e4v_A Adenylate kinase; trans 96.9 0.00063 2.2E-08 49.7 3.2 21 13-33 2-22 (214)
337 1rz3_A Hypothetical protein rb 96.9 0.0007 2.4E-08 49.0 3.4 25 10-34 21-45 (201)
338 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00055 1.9E-08 54.1 2.9 24 13-36 32-55 (359)
339 2pt5_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 47.2 3.3 21 13-33 2-22 (168)
340 1ukz_A Uridylate kinase; trans 96.8 0.0009 3.1E-08 48.3 3.9 24 11-34 15-38 (203)
341 2bbs_A Cystic fibrosis transme 96.8 0.0006 2.1E-08 52.4 3.0 23 13-35 66-88 (290)
342 3jvv_A Twitching mobility prot 96.8 0.00065 2.2E-08 53.7 3.3 22 13-34 125-146 (356)
343 3sr0_A Adenylate kinase; phosp 96.8 0.00072 2.5E-08 49.2 3.3 22 13-34 2-23 (206)
344 1odf_A YGR205W, hypothetical 3 96.8 0.00084 2.9E-08 51.6 3.7 27 9-35 29-55 (290)
345 3tui_C Methionine import ATP-b 96.8 0.00064 2.2E-08 53.8 3.1 23 13-35 56-78 (366)
346 2bwj_A Adenylate kinase 5; pho 96.8 0.0003 1E-08 50.6 1.1 24 11-34 12-35 (199)
347 2x8a_A Nuclear valosin-contain 96.8 0.00065 2.2E-08 51.8 3.0 21 14-34 47-67 (274)
348 1uj2_A Uridine-cytidine kinase 96.8 0.00079 2.7E-08 50.6 3.5 24 10-33 21-44 (252)
349 1sq5_A Pantothenate kinase; P- 96.8 0.00084 2.9E-08 52.0 3.7 26 9-34 78-103 (308)
350 2vp4_A Deoxynucleoside kinase; 96.8 0.00073 2.5E-08 50.0 3.2 26 9-34 18-43 (230)
351 1z47_A CYSA, putative ABC-tran 96.8 0.00068 2.3E-08 53.6 3.1 23 13-35 43-65 (355)
352 2z0h_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 48.4 3.0 22 13-34 2-23 (197)
353 2v54_A DTMP kinase, thymidylat 96.8 0.00081 2.8E-08 48.5 3.3 24 11-34 4-27 (204)
354 2yyz_A Sugar ABC transporter, 96.8 0.00071 2.4E-08 53.5 3.1 23 13-35 31-53 (359)
355 2yvu_A Probable adenylyl-sulfa 96.8 0.0011 3.8E-08 47.2 3.9 25 10-34 12-36 (186)
356 1rj9_A FTSY, signal recognitio 96.8 0.00073 2.5E-08 52.3 3.0 25 11-35 102-126 (304)
357 3rlf_A Maltose/maltodextrin im 96.8 0.00074 2.5E-08 53.8 3.1 23 13-35 31-53 (381)
358 2c95_A Adenylate kinase 1; tra 96.8 0.00074 2.5E-08 48.4 2.9 23 11-33 9-31 (196)
359 2it1_A 362AA long hypothetical 96.8 0.00075 2.5E-08 53.5 3.1 23 13-35 31-53 (362)
360 1gvn_B Zeta; postsegregational 96.8 0.00092 3.1E-08 51.3 3.5 24 10-33 32-55 (287)
361 1xjc_A MOBB protein homolog; s 96.8 0.0009 3.1E-08 47.1 3.2 23 12-34 5-27 (169)
362 1ixz_A ATP-dependent metallopr 96.8 0.00079 2.7E-08 50.5 3.1 21 14-34 52-72 (254)
363 2wwf_A Thymidilate kinase, put 96.8 0.001 3.5E-08 48.3 3.6 24 11-34 10-33 (212)
364 1zd8_A GTP:AMP phosphotransfer 96.8 0.00086 2.9E-08 49.5 3.2 23 11-33 7-29 (227)
365 2ffh_A Protein (FFH); SRP54, s 96.7 0.014 4.6E-07 47.3 10.3 25 11-35 98-122 (425)
366 2pbr_A DTMP kinase, thymidylat 96.7 0.00095 3.3E-08 47.7 3.3 21 13-33 2-22 (195)
367 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.9E-08 47.2 3.7 22 12-33 7-28 (194)
368 4e22_A Cytidylate kinase; P-lo 96.7 0.00087 3E-08 50.4 3.2 22 11-32 27-48 (252)
369 3b9q_A Chloroplast SRP recepto 96.7 0.00083 2.8E-08 51.9 3.1 26 10-35 99-124 (302)
370 1g29_1 MALK, maltose transport 96.7 0.00081 2.8E-08 53.5 3.1 23 13-35 31-53 (372)
371 1v43_A Sugar-binding transport 96.7 0.00083 2.8E-08 53.4 3.1 23 13-35 39-61 (372)
372 2ewv_A Twitching motility prot 96.7 0.00087 3E-08 53.4 3.2 23 12-34 137-159 (372)
373 2xb4_A Adenylate kinase; ATP-b 96.7 0.00095 3.2E-08 49.2 3.2 21 13-33 2-22 (223)
374 2gza_A Type IV secretion syste 96.7 0.00079 2.7E-08 53.4 2.9 24 12-35 176-199 (361)
375 1vht_A Dephospho-COA kinase; s 96.7 0.0012 4.1E-08 48.3 3.6 23 11-33 4-26 (218)
376 1gtv_A TMK, thymidylate kinase 96.7 0.00038 1.3E-08 50.7 0.9 22 13-34 2-23 (214)
377 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00076 2.6E-08 52.8 2.6 23 13-35 173-195 (330)
378 3be4_A Adenylate kinase; malar 96.7 0.001 3.5E-08 48.8 3.1 24 11-34 5-28 (217)
379 1e6c_A Shikimate kinase; phosp 96.7 0.0011 3.7E-08 46.5 3.1 21 13-33 4-24 (173)
380 3umf_A Adenylate kinase; rossm 96.7 0.0015 5E-08 48.0 3.9 22 13-34 31-52 (217)
381 2pez_A Bifunctional 3'-phospho 96.7 0.0013 4.5E-08 46.5 3.5 24 11-34 5-28 (179)
382 3d31_A Sulfate/molybdate ABC t 96.7 0.00068 2.3E-08 53.4 2.2 23 13-35 28-50 (348)
383 2p5t_B PEZT; postsegregational 96.7 0.00084 2.9E-08 50.5 2.6 26 9-34 30-55 (253)
384 1zuh_A Shikimate kinase; alpha 96.6 0.0012 4.2E-08 46.1 3.2 26 8-33 4-29 (168)
385 1zak_A Adenylate kinase; ATP:A 96.6 0.001 3.5E-08 48.8 2.9 23 12-34 6-28 (222)
386 2iyv_A Shikimate kinase, SK; t 96.6 0.0012 4E-08 46.9 3.0 21 13-33 4-24 (184)
387 1p9r_A General secretion pathw 96.6 0.001 3.5E-08 53.8 3.0 23 13-35 169-191 (418)
388 3gd7_A Fusion complex of cysti 96.6 0.0011 3.6E-08 53.2 2.9 22 13-34 49-70 (390)
389 1iy2_A ATP-dependent metallopr 96.6 0.0012 4E-08 50.3 3.1 21 14-34 76-96 (278)
390 1jbk_A CLPB protein; beta barr 96.6 0.0014 4.8E-08 46.3 3.3 24 12-35 44-67 (195)
391 2f6r_A COA synthase, bifunctio 96.6 0.0017 5.8E-08 49.6 3.9 24 10-33 74-97 (281)
392 1in4_A RUVB, holliday junction 96.6 0.0012 3.9E-08 51.9 3.0 23 12-34 52-74 (334)
393 2ze6_A Isopentenyl transferase 96.6 0.0013 4.3E-08 49.6 3.1 22 13-34 3-24 (253)
394 2vli_A Antibiotic resistance p 96.6 0.00088 3E-08 47.4 2.2 22 12-33 6-27 (183)
395 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0013 4.3E-08 49.7 3.1 23 12-34 5-27 (260)
396 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.6E-08 48.7 3.2 24 10-33 8-31 (233)
397 3end_A Light-independent proto 96.6 0.045 1.6E-06 42.1 12.0 81 115-203 155-242 (307)
398 2oap_1 GSPE-2, type II secreti 96.6 0.0011 3.9E-08 54.9 3.0 23 13-35 262-284 (511)
399 3gmt_A Adenylate kinase; ssgci 96.5 0.0015 5.1E-08 48.3 3.2 27 7-33 4-30 (230)
400 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0013 4.6E-08 48.2 3.0 23 13-35 25-47 (235)
401 1oxx_K GLCV, glucose, ABC tran 96.5 0.00067 2.3E-08 53.6 1.4 23 13-35 33-55 (353)
402 1ak2_A Adenylate kinase isoenz 96.5 0.0015 5.1E-08 48.4 3.3 24 11-34 16-39 (233)
403 2og2_A Putative signal recogni 96.5 0.0014 4.8E-08 51.9 3.1 26 10-35 156-181 (359)
404 3nwj_A ATSK2; P loop, shikimat 96.5 0.0013 4.3E-08 49.4 2.7 22 12-33 49-70 (250)
405 2obl_A ESCN; ATPase, hydrolase 96.5 0.0015 5.3E-08 51.4 3.2 24 12-35 72-95 (347)
406 3kta_A Chromosome segregation 96.5 0.0015 5.3E-08 46.2 3.0 22 13-34 28-49 (182)
407 4eaq_A DTMP kinase, thymidylat 96.5 0.0024 8.2E-08 47.3 4.0 26 10-35 25-50 (229)
408 2yhs_A FTSY, cell division pro 96.5 0.0015 5.2E-08 53.7 3.1 25 11-35 293-317 (503)
409 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0012 4.2E-08 54.0 2.6 24 12-35 139-162 (460)
410 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6E-08 48.1 3.2 24 10-33 15-38 (236)
411 1m7g_A Adenylylsulfate kinase; 96.4 0.0022 7.5E-08 46.7 3.5 24 11-34 25-48 (211)
412 1lv7_A FTSH; alpha/beta domain 96.4 0.0018 6.2E-08 48.6 3.1 23 12-34 46-68 (257)
413 1cr0_A DNA primase/helicase; R 96.4 0.0017 5.7E-08 49.9 2.9 24 13-36 37-60 (296)
414 1nij_A Hypothetical protein YJ 96.4 0.0014 4.8E-08 51.0 2.5 24 12-35 5-28 (318)
415 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0097 3.3E-07 48.3 7.3 25 8-32 64-88 (457)
416 2p65_A Hypothetical protein PF 96.4 0.0016 5.6E-08 45.9 2.4 24 12-35 44-67 (187)
417 2w58_A DNAI, primosome compone 96.4 0.0024 8.1E-08 46.0 3.3 24 12-35 55-78 (202)
418 1n0w_A DNA repair protein RAD5 96.3 0.0022 7.5E-08 47.5 3.1 22 13-34 26-47 (243)
419 3bos_A Putative DNA replicatio 96.3 0.0024 8.1E-08 47.1 3.3 25 11-35 52-76 (242)
420 2cvh_A DNA repair and recombin 96.3 0.0022 7.5E-08 46.7 3.0 21 13-33 22-42 (220)
421 4i1u_A Dephospho-COA kinase; s 96.3 0.0029 9.8E-08 46.1 3.5 31 4-34 2-32 (210)
422 1svm_A Large T antigen; AAA+ f 96.3 0.0022 7.4E-08 51.1 3.0 23 11-33 169-191 (377)
423 1yqt_A RNAse L inhibitor; ATP- 96.3 0.003 1E-07 52.8 3.9 25 12-36 48-72 (538)
424 3euj_A Chromosome partition pr 96.3 0.0023 7.9E-08 52.6 3.1 22 12-33 30-51 (483)
425 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0025 8.5E-08 43.8 2.8 20 14-33 26-45 (149)
426 2dpy_A FLII, flagellum-specifi 96.3 0.0025 8.5E-08 51.9 3.2 24 12-35 158-181 (438)
427 1ltq_A Polynucleotide kinase; 96.2 0.003 1E-07 48.6 3.5 22 12-33 3-24 (301)
428 1tue_A Replication protein E1; 96.2 0.0022 7.4E-08 46.5 2.4 23 12-34 59-81 (212)
429 3ake_A Cytidylate kinase; CMP 96.2 0.0032 1.1E-07 45.4 3.3 21 13-33 4-24 (208)
430 3b60_A Lipid A export ATP-bind 96.2 0.0026 9E-08 53.7 3.1 23 13-35 371-393 (582)
431 3ozx_A RNAse L inhibitor; ATP 96.2 0.0026 9E-08 53.1 3.0 24 13-36 27-50 (538)
432 3b5x_A Lipid A export ATP-bind 96.1 0.0031 1E-07 53.3 3.2 23 13-35 371-393 (582)
433 3n70_A Transport activator; si 96.1 0.0039 1.3E-07 42.5 3.2 24 12-35 25-48 (145)
434 1a7j_A Phosphoribulokinase; tr 96.1 0.0017 5.7E-08 49.9 1.4 23 11-33 5-27 (290)
435 1njg_A DNA polymerase III subu 96.1 0.0033 1.1E-07 46.1 3.0 22 13-34 47-68 (250)
436 3b9p_A CG5977-PA, isoform A; A 96.1 0.0033 1.1E-07 48.2 3.0 24 11-34 54-77 (297)
437 3t15_A Ribulose bisphosphate c 96.1 0.0044 1.5E-07 47.6 3.6 26 10-35 35-60 (293)
438 3uc9_A Increased recombination 96.1 0.019 6.6E-07 42.1 6.7 26 10-35 26-53 (233)
439 2chg_A Replication factor C sm 96.1 0.0037 1.3E-07 45.3 3.0 21 14-34 41-61 (226)
440 3j16_B RLI1P; ribosome recycli 96.1 0.0041 1.4E-07 52.7 3.7 24 13-36 105-128 (608)
441 3h4m_A Proteasome-activating n 96.0 0.0035 1.2E-07 47.7 3.0 25 10-34 50-74 (285)
442 2yl4_A ATP-binding cassette SU 96.0 0.0027 9.2E-08 53.8 2.5 23 13-35 372-394 (595)
443 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.0036 1.2E-07 49.7 3.1 20 14-33 26-45 (365)
444 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0038 1.3E-07 46.8 3.1 24 11-34 39-62 (262)
445 3qf4_B Uncharacterized ABC tra 96.0 0.003 1E-07 53.5 2.7 23 13-35 383-405 (598)
446 3cf0_A Transitional endoplasmi 96.0 0.0039 1.3E-07 48.1 3.0 24 11-34 49-72 (301)
447 3bk7_A ABC transporter ATP-bin 96.0 0.0048 1.6E-07 52.3 3.8 25 12-36 118-142 (607)
448 2px0_A Flagellar biosynthesis 96.0 0.0043 1.5E-07 47.8 3.2 25 11-35 105-129 (296)
449 1l8q_A Chromosomal replication 96.0 0.004 1.4E-07 48.4 3.0 24 12-35 38-61 (324)
450 1nlf_A Regulatory protein REPA 96.0 0.004 1.4E-07 47.4 2.9 22 13-34 32-53 (279)
451 1vma_A Cell division protein F 95.9 0.0043 1.5E-07 48.0 3.1 25 11-35 104-128 (306)
452 3ozx_A RNAse L inhibitor; ATP 95.9 0.0042 1.4E-07 51.9 3.2 24 13-36 296-319 (538)
453 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0057 1.9E-07 51.2 3.9 24 13-36 314-337 (538)
454 3zvl_A Bifunctional polynucleo 95.9 0.0042 1.4E-07 50.2 3.0 24 11-34 258-281 (416)
455 3syl_A Protein CBBX; photosynt 95.9 0.0053 1.8E-07 47.3 3.4 26 9-34 65-90 (309)
456 4fcw_A Chaperone protein CLPB; 95.9 0.0064 2.2E-07 46.8 3.9 25 11-35 47-71 (311)
457 1d2n_A N-ethylmaleimide-sensit 95.9 0.0069 2.4E-07 45.8 4.0 26 9-34 62-87 (272)
458 4a82_A Cystic fibrosis transme 95.8 0.0026 8.9E-08 53.7 1.6 23 13-35 369-391 (578)
459 3bk7_A ABC transporter ATP-bin 95.8 0.0065 2.2E-07 51.5 3.9 24 13-36 384-407 (607)
460 2qby_A CDC6 homolog 1, cell di 95.8 0.0049 1.7E-07 48.7 3.0 24 11-34 45-68 (386)
461 1p5z_B DCK, deoxycytidine kina 95.8 0.0035 1.2E-07 47.3 2.0 25 10-34 23-47 (263)
462 3qf4_A ABC transporter, ATP-bi 95.8 0.0034 1.2E-07 53.1 2.0 23 13-35 371-393 (587)
463 2qmh_A HPR kinase/phosphorylas 95.8 0.0062 2.1E-07 43.8 3.1 24 12-35 35-58 (205)
464 2ga8_A Hypothetical 39.9 kDa p 95.8 0.007 2.4E-07 47.6 3.6 23 11-33 24-46 (359)
465 1sxj_E Activator 1 40 kDa subu 95.7 0.0046 1.6E-07 48.6 2.5 21 14-34 39-59 (354)
466 2dr3_A UPF0273 protein PH0284; 95.7 0.0058 2E-07 45.3 2.9 22 13-34 25-46 (247)
467 1fnn_A CDC6P, cell division co 95.7 0.0064 2.2E-07 48.3 3.3 23 13-35 46-68 (389)
468 1pzn_A RAD51, DNA repair and r 95.7 0.0055 1.9E-07 48.3 2.9 24 12-35 132-155 (349)
469 3j16_B RLI1P; ribosome recycli 95.7 0.0057 2E-07 51.8 3.1 24 14-37 381-404 (608)
470 1ofh_A ATP-dependent HSL prote 95.7 0.0063 2.2E-07 46.7 3.1 24 11-34 50-73 (310)
471 2ocp_A DGK, deoxyguanosine kin 95.7 0.0075 2.6E-07 44.8 3.4 23 12-34 3-25 (241)
472 1sxj_C Activator 1 40 kDa subu 95.7 0.0062 2.1E-07 47.7 3.0 22 14-35 49-70 (340)
473 2h92_A Cytidylate kinase; ross 95.6 0.0058 2E-07 44.6 2.6 22 12-33 4-25 (219)
474 1qhl_A Protein (cell division 95.6 0.0014 4.7E-08 48.5 -0.8 23 14-36 30-52 (227)
475 3cr8_A Sulfate adenylyltranfer 95.6 0.005 1.7E-07 51.6 2.4 26 10-35 368-393 (552)
476 3a8t_A Adenylate isopentenyltr 95.6 0.0091 3.1E-07 46.7 3.7 23 12-34 41-63 (339)
477 3ch4_B Pmkase, phosphomevalona 95.6 0.013 4.4E-07 42.3 4.2 32 2-33 2-33 (202)
478 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.007 2.4E-07 47.2 3.0 24 11-34 45-68 (322)
479 4edh_A DTMP kinase, thymidylat 95.6 0.0078 2.7E-07 43.9 3.0 24 11-34 6-29 (213)
480 3eie_A Vacuolar protein sortin 95.6 0.0076 2.6E-07 46.9 3.2 25 10-34 50-74 (322)
481 3crm_A TRNA delta(2)-isopenten 95.6 0.0094 3.2E-07 46.3 3.6 23 12-34 6-28 (323)
482 4b4t_K 26S protease regulatory 95.6 0.0074 2.5E-07 48.8 3.1 24 11-34 206-229 (428)
483 3qks_A DNA double-strand break 95.5 0.0082 2.8E-07 43.5 3.1 21 13-33 25-45 (203)
484 3d3q_A TRNA delta(2)-isopenten 95.5 0.0076 2.6E-07 47.2 3.0 23 12-34 8-30 (340)
485 3co5_A Putative two-component 95.5 0.0038 1.3E-07 42.5 1.1 23 12-34 28-50 (143)
486 3v9p_A DTMP kinase, thymidylat 95.5 0.0065 2.2E-07 44.8 2.4 24 11-34 25-48 (227)
487 2iw3_A Elongation factor 3A; a 95.5 0.009 3.1E-07 53.2 3.6 24 13-36 463-486 (986)
488 1sxj_D Activator 1 41 kDa subu 95.5 0.0082 2.8E-07 47.0 3.0 21 14-34 61-81 (353)
489 2r62_A Cell division protease 95.5 0.0037 1.3E-07 47.2 1.0 22 13-34 46-67 (268)
490 2v1u_A Cell division control p 95.4 0.0073 2.5E-07 47.8 2.7 25 11-35 44-68 (387)
491 2qgz_A Helicase loader, putati 95.4 0.0097 3.3E-07 46.1 3.3 25 11-35 152-176 (308)
492 4f4c_A Multidrug resistance pr 95.4 0.005 1.7E-07 56.9 1.9 22 13-34 1107-1128(1321)
493 4b4t_M 26S protease regulatory 95.4 0.0095 3.2E-07 48.3 3.3 25 10-34 214-238 (434)
494 3m6a_A ATP-dependent protease 95.4 0.0083 2.8E-07 50.2 3.0 24 12-35 109-132 (543)
495 3ld9_A DTMP kinase, thymidylat 95.4 0.012 4.2E-07 43.2 3.6 25 10-34 20-44 (223)
496 2iw3_A Elongation factor 3A; a 95.4 0.0053 1.8E-07 54.7 1.9 23 13-35 701-723 (986)
497 2dhr_A FTSH; AAA+ protein, hex 95.4 0.0088 3E-07 49.4 3.0 22 13-34 66-87 (499)
498 3uk6_A RUVB-like 2; hexameric 95.4 0.0088 3E-07 47.2 2.9 23 12-34 71-93 (368)
499 2z4s_A Chromosomal replication 95.3 0.0091 3.1E-07 48.6 3.0 23 12-34 131-153 (440)
500 3lv8_A DTMP kinase, thymidylat 95.3 0.0099 3.4E-07 44.1 2.9 23 12-34 28-50 (236)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.7e-38 Score=232.63 Aligned_cols=161 Identities=37% Similarity=0.725 Sum_probs=139.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+|+|.+|||||||++++..+.+...+.++++.++.......++..+.+.+|||+|++++..++..++++++++++|
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv 92 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVV 92 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEE
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEE
Confidence 58999999999999999999999999999999999999898998999999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||+++.++++.+..|++.+. .....++|+
T Consensus 93 ~di~~~~Sf~~i~~~~~~i~---------------------------------------------------~~~~~~~pi 121 (216)
T 4dkx_A 93 YDITNVNSFQQTTKWIDDVR---------------------------------------------------TERGSDVII 121 (216)
T ss_dssp EETTCHHHHHTHHHHHHHHH---------------------------------------------------HHHTTSSEE
T ss_pred eecchhHHHHHHHHHHHHHH---------------------------------------------------HhcCCCCeE
Confidence 99999999999997666553 333347899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+.++.++.++++.++++++++|||++|.||+++|+.|++.
T Consensus 122 ilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 122 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 173 (216)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHH
Confidence 9999999999989999999999999999999999999999999999999864
No 2
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=204.38 Aligned_cols=168 Identities=51% Similarity=0.844 Sum_probs=148.8
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
.+...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 34455678999999999999999999999999888888888888888888899988999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|.++..+++.+..|+..+ ...
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~ 117 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEI---------------------------------------------------DRY 117 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence 99999999999999888888555544 333
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 118 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 118 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 33478999999999998888888899999999999999999999999999999999864
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=205.64 Aligned_cols=166 Identities=43% Similarity=0.789 Sum_probs=146.6
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
...+..+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..+...+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||.++..+++.+..|+..+ .....
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~ 129 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREI---------------------------------------------------EQYAS 129 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence 999999999999988888665544 33333
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 130 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 130 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 478999999999998877888889999999999999999999999999999998764
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=206.57 Aligned_cols=168 Identities=48% Similarity=0.834 Sum_probs=137.6
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
.+...+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 34566778999999999999999999999999877777888778878888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|||++++.+++.+..|++.+. ..
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~---------------------------------------------------~~ 130 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVR---------------------------------------------------KY 130 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHH---------------------------------------------------HH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------Hh
Confidence 999999999999998888886655542 22
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+.+.+..++.++++...++ +++++||+++.|++++|++|++.
T Consensus 131 ~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 131 AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 234789999999999988778888999999999999 99999999999999999999764
No 5
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.3e-32 Score=201.18 Aligned_cols=167 Identities=42% Similarity=0.770 Sum_probs=147.0
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
+...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 44566789999999999999999999999998878778888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|++++|+|.++..+++.+..|+..+ ....
T Consensus 96 d~ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~ 124 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQDWATQI---------------------------------------------------KTYS 124 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhc
Confidence 9999999999998888887665544 3333
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.+.+..++.++++...+++++++||+++.|++++|++|.+.
T Consensus 125 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 125 WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999998877888889999999999999999999999999999999864
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=8.8e-33 Score=202.46 Aligned_cols=168 Identities=51% Similarity=0.825 Sum_probs=143.9
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
.+...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 34556678999999999999999999999999888887888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
++++++|+|.++..+++.+..|+..+ ...
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i---------------------------------------------------~~~ 122 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDA---------------------------------------------------RQH 122 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence 99999999999998888887655544 333
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...+.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 123 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 123 SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33478999999999998877888889999999999999999999999999999998764
No 7
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=202.12 Aligned_cols=166 Identities=40% Similarity=0.726 Sum_probs=145.7
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
...++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++....+.+||+||+..+......+++.++
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 44567899999999999999999999999987778888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|++++.++..+..|+..+ .....
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~ 126 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKEL---------------------------------------------------KEHGP 126 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHH---------------------------------------------------HHHSC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHH---------------------------------------------------HHhCC
Confidence 999999999999998888665544 33333
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 127 ~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 127 ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183 (192)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 478999999999998777888899999999999999999999999999999999875
No 8
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.8e-32 Score=196.64 Aligned_cols=163 Identities=46% Similarity=0.759 Sum_probs=144.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||+++|++..+...+.++.+.++......+++..+.+.+||+||+..+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+ ......++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~ 112 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKEL---------------------------------------------------QRQASPNI 112 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTTC
T ss_pred EEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCC
Confidence 999999999888888665544 32333478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 113 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999998777788889999999999999999999999999999999875
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.2e-32 Score=200.59 Aligned_cols=165 Identities=53% Similarity=0.832 Sum_probs=146.3
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..+..+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 45778999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.+++.++..+..|+..+ ......
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~ 114 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDA---------------------------------------------------RMLASQ 114 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence 99999999998888887665544 323334
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.
T Consensus 115 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 115 NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 78999999999998777888889999999999999999999999999999998764
No 10
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=200.89 Aligned_cols=167 Identities=68% Similarity=1.091 Sum_probs=146.7
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34566789999999999999999999999998888888888888888888888899999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
+++++|+|.+++.++..+..|+..+ ....
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i---------------------------------------------------~~~~ 127 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKEL---------------------------------------------------YDHA 127 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhc
Confidence 9999999999988888887555544 3333
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 128 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3478999999999998877788889999999999999999999999999999998764
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=8.6e-33 Score=198.48 Aligned_cols=164 Identities=38% Similarity=0.689 Sum_probs=138.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999988877888888888778888888889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|+++..++..+..|+..+.. ....+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------~~~~~ 111 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRK---------------------------------------------------MLGNE 111 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HHGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hcCCC
Confidence 999999999988888866655422 22236
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1z08_A 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR 166 (170)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 8999999999998877888899999999999999999999999999999999864
No 12
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.3e-32 Score=199.10 Aligned_cols=167 Identities=52% Similarity=0.857 Sum_probs=146.1
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
+...++.+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34566789999999999999999999999998887888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|++++|+|.++..++..+..|+..+ ....
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~ 117 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDA---------------------------------------------------RNLT 117 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHS
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHH---------------------------------------------------HHhc
Confidence 9999999999998888887555544 3333
Q ss_pred CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.+.+..++.++++...+++++++||+++.|++++|++|++.
T Consensus 118 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3478999999999998877888889999999999999999999999999999999864
No 13
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.1e-32 Score=195.50 Aligned_cols=164 Identities=41% Similarity=0.715 Sum_probs=145.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+++|.+|||||||++++.+..+...+.++.+.++......+.+....+.+||+||+..+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.+++.++..+..|++.+ ......+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l---------------------------------------------------~~~~~~~ 111 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVREL---------------------------------------------------RQHGPPS 111 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCC
Confidence 9999999999888887555544 3333357
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 112 ~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 8999999999998877888889999999999999999999999999999999875
No 14
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3e-33 Score=203.44 Aligned_cols=164 Identities=48% Similarity=0.861 Sum_probs=116.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 56789999999999999999999999888777778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||++++.++..+..|+..+ ......+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~ 113 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNI---------------------------------------------------EEHASAD 113 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCC
Confidence 9999999999888888665544 3333347
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999998777788899999999999999999999999999999999764
No 15
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.9e-32 Score=197.70 Aligned_cols=165 Identities=42% Similarity=0.749 Sum_probs=145.3
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
.....+||+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.+++.+++.+..|+..+ ......
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~ 116 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQEL---------------------------------------------------QAQGNP 116 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence 99999999999888888665544 333334
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 117 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 117 NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172 (181)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHT
T ss_pred CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999998777788899999999999999999999999999999999875
No 16
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-32 Score=195.06 Aligned_cols=162 Identities=40% Similarity=0.706 Sum_probs=143.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
+.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888788888888888888888889999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.+++.++..+..|+..+. .....+.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~~~~p 110 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELH---------------------------------------------------EQASKDII 110 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHH---------------------------------------------------HHSCTTCE
T ss_pred EEecCChHHHHHHHHHHHHHH---------------------------------------------------HhcCCCCc
Confidence 999999999888886655542 22234789
Q ss_pred EEEeecccchhhc---cCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHL---RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+. +.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 111 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 111 IALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred EEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999765 6677888899999999999999999999999999999864
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=197.36 Aligned_cols=164 Identities=45% Similarity=0.797 Sum_probs=143.9
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..++.+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.+++.++..+..|+..+.. .. .
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------~~-~ 112 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQ---------------------------------------------------NC-D 112 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HC-T
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-C
Confidence 9999999999999888866555422 22 2
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999888888899999999999999999999999999999999864
No 18
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.1e-32 Score=201.78 Aligned_cols=165 Identities=52% Similarity=0.890 Sum_probs=146.8
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.+++.++..+..|+..+ ......
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~ 112 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEI---------------------------------------------------DRYATS 112 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence 99999999999998888665544 333334
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 113 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 78999999999998877788889999999999999999999999999999998764
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=201.62 Aligned_cols=168 Identities=39% Similarity=0.729 Sum_probs=138.3
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
.+.+.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 34556778999999999999999999999998887888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|.++..+++.+..|++.+ ...
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i---------------------------------------------------~~~ 127 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMI---------------------------------------------------DKY 127 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence 99999999999998888887555444 333
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+.+.+..++.+.++... +.+++++||+++.|++++|++|.+.
T Consensus 128 ~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 128 ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3347899999999999887788888888888874 8899999999999999999999764
No 20
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-32 Score=201.25 Aligned_cols=165 Identities=39% Similarity=0.765 Sum_probs=146.0
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+.++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45678999999999999999999999999888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.+++.++..+..|+..+ ......
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~ 112 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQI---------------------------------------------------KTYSWD 112 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence 99999999998888888665544 333334
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 113 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999998877788889999999999999999999999999999998764
No 21
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.3e-32 Score=195.84 Aligned_cols=162 Identities=36% Similarity=0.720 Sum_probs=144.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+......+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.+++.++..+..|+..+ ......++|
T Consensus 93 v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~p 121 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDV---------------------------------------------------RTERGSDVI 121 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHHTTSSE
T ss_pred EEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCCc
Confidence 99999988888887665544 222234789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 122 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred EEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999998877888889999999999999999999999999999999874
No 22
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=201.90 Aligned_cols=166 Identities=52% Similarity=0.815 Sum_probs=135.2
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
...+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 34567899999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|++++.++..+..|+..+ .....
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~ 128 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDA---------------------------------------------------RTLAS 128 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence 999999999999888888665544 22233
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 129 PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 478999999999998877888889999999999999999999999999999999764
No 23
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-33 Score=204.71 Aligned_cols=166 Identities=40% Similarity=0.779 Sum_probs=147.3
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 34567799999999999999999999999888888788888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||.+++.+++.+..|++.+ .....
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~ 126 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQI---------------------------------------------------KTYSW 126 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence 999999999999988888665544 33333
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999998888889999999999999999999999999999999999864
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=6e-32 Score=196.52 Aligned_cols=166 Identities=33% Similarity=0.540 Sum_probs=144.7
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
....+.+||+|+|.+|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||+..+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4455689999999999999999999999988888878877666 667778888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||.+++.+++.+..|+..+... ...
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~ 121 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRV--------------------------------------------------KDR 121 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HTS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCC
Confidence 999999999999998888766655221 122
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC-CCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL-DSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+ ++.|++++|++|.+.
T Consensus 122 ~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 478999999999998878889999999999999999999999 999999999999864
No 25
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-32 Score=195.80 Aligned_cols=167 Identities=43% Similarity=0.753 Sum_probs=136.4
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 83 (223)
.+..++.+||+++|.+|||||||++++.+..+. ..+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345677899999999999999999999998875 3556777778777777788888999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|.+++.++..+..|+..+ ...
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~ 112 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEI---------------------------------------------------HEY 112 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence 99999999999998888887665544 333
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 113 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (180)
T 2g6b_A 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171 (180)
T ss_dssp SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 33478999999999998877788889999999999999999999999999999998764
No 26
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-32 Score=202.69 Aligned_cols=164 Identities=71% Similarity=1.127 Sum_probs=137.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.++++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 45679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||++++.++..+..|+..+. .....+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~---------------------------------------------------~~~~~~ 118 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELR---------------------------------------------------ENADDN 118 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHH---------------------------------------------------HHCC--
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---------------------------------------------------HhCCCC
Confidence 99999999999988886655552 222347
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999998877888889999999999999999999999999999998764
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4e-32 Score=197.14 Aligned_cols=164 Identities=32% Similarity=0.448 Sum_probs=142.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
..+.+||+++|.+|||||||++++.+..+...+.++.+.++ ......++..+.+.+||+||+..+..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999998888888878877666 66777888889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||.+++.+++.+..|+..+... ....+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~ 111 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDM--------------------------------------------------VGKVQ 111 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------C----
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCC
Confidence 9999999999999998776655321 11236
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166 (181)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 8999999999998888899999999999999999999999999999999999864
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=6.3e-32 Score=193.50 Aligned_cols=162 Identities=35% Similarity=0.627 Sum_probs=143.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
+..+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..+...+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.+++.+..|+..+.. .. .+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~~ 110 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVA---------------------------------------------------EV-GDI 110 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------------------------------------HH-CSC
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCC
Confidence 99999999888888766655522 11 368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 111 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 111 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp CEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred CEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 999999999998877788889999999999999999999999999999999864
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=6.4e-32 Score=197.91 Aligned_cols=169 Identities=40% Similarity=0.737 Sum_probs=143.2
Q ss_pred CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeE-EEEEEEcCe---------EEEEEEEeCCCCcc
Q psy15625 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA-TRSIQVDQK---------TIKAQIWDTAGQER 72 (223)
Q Consensus 3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~G~~~ 72 (223)
|+....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||+..
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 45556778899999999999999999999999888777788877776 555656655 78999999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
+......+++.+|++++|+|.+++.++..+..|+..+..
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----------------------------------------- 121 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM----------------------------------------- 121 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHH-----------------------------------------
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 999999999999999999999999888888766555432
Q ss_pred hHHHHHHhhhccC-CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 153 VERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 153 ~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 122 ----------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 122 ----------HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp ----------HSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----------hcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 221 478999999999998877888889999999999999999999999999999999764
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=4.5e-32 Score=194.63 Aligned_cols=161 Identities=45% Similarity=0.835 Sum_probs=135.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999999887777888878878888888888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.+++.++..+..|+..+ ......++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~p 110 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTV---------------------------------------------------NEHANDEAQ 110 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTTCE
T ss_pred EEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCCc
Confidence 99999988888887555544 333334789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+. .+....++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 111 iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 111 LLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp EEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999994 45677888899999999999999999999999999998764
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.6e-31 Score=193.62 Aligned_cols=166 Identities=31% Similarity=0.509 Sum_probs=142.9
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
.+....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||+..+..++..+++.++
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34456799999999999999999999999887777777766654 56667888889999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||+++..++..+..|+..+.. ....
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~ 112 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILR--------------------------------------------------VKDR 112 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHH--------------------------------------------------HHTS
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHH--------------------------------------------------hcCC
Confidence 99999999999999888866655422 1223
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 113 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 478999999999998878888899999999999999999999999999999999864
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.5e-32 Score=195.77 Aligned_cols=166 Identities=32% Similarity=0.547 Sum_probs=141.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-eEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+.+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||+..+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999999988777778887778788887876 678999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.+++.+++.+..|+..+..... .....
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~~~~~ 115 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSE------------------------------------------------ESETQ 115 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHH------------------------------------------------HHTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhc------------------------------------------------ccCCC
Confidence 999999999999888877666533110 01123
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 116 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 4589999999998877788889999999999999999999999999999999864
No 33
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=200.08 Aligned_cols=169 Identities=27% Similarity=0.372 Sum_probs=136.5
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-cchhhhc
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-ITSAYYR 82 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~ 82 (223)
.+.+.++.+||+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|+..+.. ++..+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 344556789999999999999999999986554444445555666677777888899999999999987664 7778899
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.++++++|||++++.++..+..|+..+....
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------------------------------------- 126 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGR------------------------------------------------- 126 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 9999999999999999998887666553211
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 127 -~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 127 -PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp -TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 11368999999999998777788889999999999999999999999999999999864
No 34
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=199.39 Aligned_cols=165 Identities=38% Similarity=0.669 Sum_probs=131.5
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..++.+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+......+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34557999999999999999999999998877777888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||.++..++..+..|++.+ ......
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~ 132 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMI---------------------------------------------------EDAAHE 132 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHC--
T ss_pred EEEEEECCChHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence 99999999998888887665544 333334
Q ss_pred CceEEEeecccchhh------ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRH------LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+ .+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus 133 ~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp -CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999963 46677888899999999999999999999999999999864
No 35
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1e-31 Score=196.45 Aligned_cols=166 Identities=38% Similarity=0.706 Sum_probs=142.8
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-ccchhhhcCCc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-AITSAYYRGAV 85 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~ 85 (223)
+..+.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+. .+...+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34457999999999999999999999999888888888888888888888888999999999998888 88889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|.++..++..+..|+..+... ...
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~ 125 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQH--------------------------------------------------LLA 125 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------CCC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------------------------cCC
Confidence 999999999999988888666655331 112
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCC---CCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS---TNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++ .|++++|++|++.
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 126 NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC--
T ss_pred CCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHH
Confidence 46899999999999887788889999999999999999999999 9999999998764
No 36
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=196.11 Aligned_cols=165 Identities=26% Similarity=0.408 Sum_probs=136.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
....+||+++|.+|||||||++++.+..+...+.++.+..+ .....+++..+.+.+||++|+..+..+ ..+++.++++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34579999999999999999999999998877778877655 455667888899999999999888775 5689999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||+++..++..+..|+..+..... ....+
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~~~~~ 127 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAK------------------------------------------------ETQRS 127 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHH------------------------------------------------HHCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhh------------------------------------------------ccCCC
Confidence 999999999999999877766633110 01137
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeec-CCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSA-LDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+.+..++.++++...+++++++|| +++.|++++|+.|++.
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred CCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHH
Confidence 899999999999887888899999999999999999999 8999999999999864
No 37
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.1e-31 Score=200.14 Aligned_cols=164 Identities=22% Similarity=0.435 Sum_probs=137.8
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
......+||+|+|.+|||||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||++|+..+..++..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445579999999999999999999999999888888887665 456667788889999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHH-HHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 86 GALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
++++|||++++.++.. +..|++.+.. ..
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~---------------------------------------------------~~ 129 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILD---------------------------------------------------YC 129 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHH---------------------------------------------------HC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHH---------------------------------------------------hC
Confidence 9999999999999988 5766555522 22
Q ss_pred CCCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+. +.+..++...++...++ ++++|||+++.| ++++|++|++.
T Consensus 130 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 130 -PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp -TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 37899999999999763 67889999999999999 999999999998 99999999874
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.5e-31 Score=191.84 Aligned_cols=162 Identities=27% Similarity=0.391 Sum_probs=126.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-cchhhhcCCcEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-ITSAYYRGAVGALL 89 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~ 89 (223)
.+||+++|.+|||||||++++.+........++.+.+.....+.+++..+.+.+||++|+..+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777766666667777788888899999999999999988876 77778999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||+++++++..+..|+..+... ....++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p 111 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAG--------------------------------------------------RPHHDLP 111 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------STTSCCC
T ss_pred EEECCChHHHHHHHHHHHHHHhc--------------------------------------------------ccCCCCC
Confidence 99999999999888666655321 1113689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus 112 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 112 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999864
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.2e-31 Score=192.39 Aligned_cols=168 Identities=38% Similarity=0.700 Sum_probs=140.6
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+.++.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35568999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|+++..++..+..|+..+..... .....
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~ 115 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYAD-----------------------------------------------VKEPE 115 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-----------------------------------------------CSCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHcc-----------------------------------------------ccccC
Confidence 9999999999998888877766633211 11124
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+. .+....++.+.++. ..+++++++||+++.|++++|++|++.
T Consensus 116 ~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 116 SFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp TSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 78999999999997 45677888888888 567899999999999999999999864
No 40
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=207.54 Aligned_cols=169 Identities=51% Similarity=0.842 Sum_probs=138.4
Q ss_pred CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
..+...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++
T Consensus 25 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 104 (199)
T 3l0i_B 25 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 104 (199)
T ss_dssp CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred ccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence 34455677899999999999999999999999888887888888888888888998899999999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|||.++..+++.+..|+..+ ..
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~ 133 (199)
T 3l0i_B 105 GAHGIIVVYDVTDQESFNNVKQWLQEI---------------------------------------------------DR 133 (199)
T ss_dssp CCSEEEECC-CCCSHHHHHHHHHHHHH---------------------------------------------------HS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HH
Confidence 999999999999999998888555444 44
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
....++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 134 ~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~ 193 (199)
T 3l0i_B 134 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 193 (199)
T ss_dssp CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTT
T ss_pred hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444578999999999998877777788889999999999999999999999999999864
No 41
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.5e-31 Score=199.64 Aligned_cols=167 Identities=39% Similarity=0.756 Sum_probs=141.4
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe----------EEEEEEEeCCCCcccc
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK----------TIKAQIWDTAGQERYR 74 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~G~~~~~ 74 (223)
....+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++. .+.+.+||+||+..+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 345567899999999999999999999999887777777777777777777665 7889999999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625 75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154 (223)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (223)
..+..+++.+|++++|||.++..++..+..|+.
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~----------------------------------------------- 131 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS----------------------------------------------- 131 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999888888875444
Q ss_pred HHHHHhhhccC-CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 155 RWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 155 ~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+..... .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 132 ----~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 132 ----QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp ----TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3333222 478999999999998877888899999999999999999999999999999999864
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=191.80 Aligned_cols=163 Identities=31% Similarity=0.444 Sum_probs=128.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--ccccchhhhcCCcE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--YRAITSAYYRGAVG 86 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~~~ 86 (223)
++.+||+++|.+|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||+.. +..+...+++.+++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45799999999999999999999998876554 4566677777788888889999999999877 56667788999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||++++.+++.+..|+..+... ....
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~--------------------------------------------------~~~~ 110 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRT--------------------------------------------------HQAD 110 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHC--------------------------------------------------C---
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hccC
Confidence 99999999999998888666555321 0123
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|.+.
T Consensus 111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999998877788888889999999999999999999999999999763
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=197.49 Aligned_cols=165 Identities=27% Similarity=0.471 Sum_probs=138.1
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+....+||+|+|.+|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345679999999999999999999999998888878777665 5566667778899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||.++..++..+..|+..+... ....
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~ 128 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEG--------------------------------------------------HGKT 128 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCC
Confidence 99999999999999988666655321 1123
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 129 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 129 RVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 68999999999999888889999999999999999999999999999999999864
No 44
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.8e-31 Score=194.14 Aligned_cols=167 Identities=26% Similarity=0.472 Sum_probs=140.0
Q ss_pred CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
|...+..+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 3444556789999999999999999999999988777777765554 455667778889999999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
++|++++|||++++.++..+. .|+..+ .
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~ 117 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPEL---------------------------------------------------K 117 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------H
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------H
Confidence 999999999999999988886 455544 2
Q ss_pred hccCCCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|+++|+||+|+.+. +.+..++...++...++ +++++||+++.|++++|++|++.
T Consensus 118 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 118 EYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 222 26899999999999753 46778899999999887 89999999999999999999864
No 45
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.98 E-value=6.4e-31 Score=192.94 Aligned_cols=163 Identities=25% Similarity=0.469 Sum_probs=138.7
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
...+.+||+++|.+|||||||++++.+..+...+.++.+.++. ....+++..+.+.+||+||+..+..++..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456799999999999999999999999988777788776654 456678888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 87 ALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
+++|||.+++.++..+ ..|+..+ ....
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~- 125 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEI---------------------------------------------------KHYI- 125 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-
Confidence 9999999999998887 5444433 3222
Q ss_pred CCceEEEeecccchhh--ccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRH--LRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+ .+.+..++.+.++...++. ++++||+++.|++++|++|++.
T Consensus 126 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 126 DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 3689999999999975 3667889999999999998 9999999999999999999864
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=5e-31 Score=188.63 Aligned_cols=162 Identities=29% Similarity=0.506 Sum_probs=138.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
+.+||+++|.+|||||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 368999999999999999999999988777777776554 4556677788899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||.+++.++..+..|++.+... ....++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p 110 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRV--------------------------------------------------KDTEDVP 110 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HCCSCCC
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hCcCCCc
Confidence 99999999888888666555221 1124789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++... +.+++++||+++.|++++|++|.+.
T Consensus 111 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 111 MILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999887788888999999887 7899999999999999999999864
No 47
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.1e-30 Score=191.57 Aligned_cols=162 Identities=45% Similarity=0.776 Sum_probs=142.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999988888888888888888888999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc-CCC
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (223)
+|+|.+++.++..+..|+..+ .... ..+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~ 121 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNEL---------------------------------------------------ETYCTRND 121 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHH---------------------------------------------------TTCCSCSC
T ss_pred EEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCcCC
Confidence 999999998888887665544 2222 236
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+ +.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 122 ~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (195)
T 1x3s_A 122 IVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 175 (195)
T ss_dssp CEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999954 5677788999999999999999999999999999999764
No 48
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=4.8e-31 Score=188.53 Aligned_cols=162 Identities=30% Similarity=0.485 Sum_probs=139.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
+.+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++....+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 36899999999999999999999998877777776543 36667788888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|++++.++..+..|+..+... ....+.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p 110 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRV--------------------------------------------------KRYEKVP 110 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTTSCCC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCC
Confidence 99999999988888666655221 1123689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 111 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 111 VILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence 99999999998877888889999999999999999999999999999999764
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=5.3e-31 Score=195.99 Aligned_cols=164 Identities=45% Similarity=0.842 Sum_probs=140.7
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..+..++|+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34557999999999999999999999998887888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||.+++.++..+..|+..+ ......
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~ 124 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTV---------------------------------------------------NEHAND 124 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence 99999999988888887665544 333334
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+ ..+....++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 125 ~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 125 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp CSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 7899999999999 445677888889999999999999999999999999998764
No 50
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.98 E-value=4.8e-31 Score=192.09 Aligned_cols=162 Identities=30% Similarity=0.519 Sum_probs=136.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..++++++++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45689999999999999999999999988877777776555 44566788888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 88 LLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 88 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
++|||++++.++..+ ..|+..+ .... .
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i---------------------------------------------------~~~~-~ 110 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEI---------------------------------------------------QEFC-P 110 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-T
T ss_pred EEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHHC-C
Confidence 999999999998888 5454443 2222 3
Q ss_pred CceEEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecC-CCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSAL-DSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~ 222 (223)
+.|+++|+||+|+.+. +.+..++.+.++.+.+ +++++|||+ ++.|++++|+.+++.
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 6899999999999752 5678888999998887 689999999 689999999999875
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=8.3e-31 Score=187.47 Aligned_cols=162 Identities=34% Similarity=0.567 Sum_probs=136.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+.++..++..+++.++++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999988777767765544 4456678888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.+++.++..+..|+..+.... ...++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~p 111 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVK--------------------------------------------------EDENVP 111 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------CCTTSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCCCc
Confidence 999999999888886666553311 123689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 112 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 112 FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 99999999998877888899999999999999999999999999999999864
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.98 E-value=5.2e-31 Score=188.53 Aligned_cols=160 Identities=31% Similarity=0.432 Sum_probs=116.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|||||||++++.+...... .++.+.++ .....+++..+.+.+||++|+..+..++..+++.++++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997765433 34444444 45566888999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
||++++.+++.+..|+..+... ....++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p~ 109 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRA--------------------------------------------------RQTDDVPI 109 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHC--------------------------------------------------C---CCCE
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence 9999999999998766655331 11246899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 110 ILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp EEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred EEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence 9999999998878889999999999999999999999999999999999864
No 53
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=1.2e-30 Score=188.82 Aligned_cols=159 Identities=23% Similarity=0.374 Sum_probs=131.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||++++.+..+.. +.++.+..+ ...+.+++..+.+.+||++|+.. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998876 567766444 56677888889999999999865 46788999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||++++.++..+..|++.+.. +......++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~------------------------------------------------~~~~~~~~~ 109 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSS------------------------------------------------LRGEGRGGL 109 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH------------------------------------------------HHCSSSCCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHH------------------------------------------------HHhcCCCCC
Confidence 99999999999999876554422 222223478
Q ss_pred eEEEeecccchh--hccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLR--HLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+. ..+.+..++.+.++... +++++++||+++.|++++|++|++.
T Consensus 110 piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp EEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence 999999999994 45677888899888876 6899999999999999999999764
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.98 E-value=1.3e-30 Score=192.54 Aligned_cols=161 Identities=39% Similarity=0.663 Sum_probs=137.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE----------------------------
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------------------- 59 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 59 (223)
.++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4568999999999999999999999999888888888877777777766654
Q ss_pred ---------EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccc
Q psy15625 60 ---------IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130 (223)
Q Consensus 60 ---------~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (223)
..+.+||+||+..+......+++.+|++++|+|.+++.++..+..|+..+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i--------------------- 142 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL--------------------- 142 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHH---------------------
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH---------------------
Confidence 78999999999999999999999999999999999998888887555544
Q ss_pred cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 210 (223)
.... +.|+++|+||+| ...+....++.+.++...+++++++||+++.
T Consensus 143 ------------------------------~~~~--~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 189 (208)
T 3clv_A 143 ------------------------------KISS--NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGT 189 (208)
T ss_dssp ------------------------------HHHS--CCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ------------------------------HhhC--CCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 2222 389999999999 5456778899999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q psy15625 211 NVETAFQNILTA 222 (223)
Q Consensus 211 ~i~~~~~~i~~~ 222 (223)
|++++|++|.+.
T Consensus 190 ~i~~l~~~l~~~ 201 (208)
T 3clv_A 190 NIKNIFYMLAEE 201 (208)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 55
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=6.8e-31 Score=194.53 Aligned_cols=163 Identities=30% Similarity=0.523 Sum_probs=136.1
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..+..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..+++++++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345679999999999999999999999998877778776655 4456677888899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 87 ALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
+++|||+++..++..+ ..|+..+ ....
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i---------------------------------------------------~~~~- 130 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEI---------------------------------------------------QEFC- 130 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHHC-
Confidence 9999999999998888 5554444 2222
Q ss_pred CCceEEEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecC-CCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSAL-DSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+ .+.+..++.+.++...+ +++++|||+ ++.|++++|+.|++.
T Consensus 131 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 3689999999999974 25677888999998887 689999999 689999999999875
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=192.25 Aligned_cols=165 Identities=30% Similarity=0.449 Sum_probs=138.4
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
....+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..+++.++
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 3445679999999999999999999999988877777776554 45566788889999999999887 777788899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||.+++.+++.+..|++.+... ...
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~ 130 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEI--------------------------------------------------KKP 130 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------------------------hCC
Confidence 999999999999988888666655321 112
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST-NVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++. |++++|++|++.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence 378999999999998877888899999999999999999999999 999999999764
No 57
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1.9e-30 Score=189.02 Aligned_cols=160 Identities=20% Similarity=0.339 Sum_probs=133.3
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
....+.+||+|+|.+|||||||++++++..+...+.++. ..+ ...+.+++..+.+.+||++|+..+. +++.++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 344557999999999999999999999999887776663 333 4777788999999999999987766 788999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||++++.+++.+..|+..+..... .
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------------------------------------------------~ 117 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRN--------------------------------------------------A 117 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSC--------------------------------------------------G
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC--------------------------------------------------C
Confidence 99999999999999998866665533211 1
Q ss_pred CCceEEEeecccchh--hccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLR--HLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+. ..+.+..++.+.++...+ +++++|||+++.|++++|++|++.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 368999999999994 456788899999999987 899999999999999999999864
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1.9e-30 Score=188.98 Aligned_cols=165 Identities=34% Similarity=0.548 Sum_probs=139.5
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
...+.+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 344579999999999999999999999988777767765544 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||+++..++..+..|+..+.... ...
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~ 122 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVK--------------------------------------------------EDE 122 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------CCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCC
Confidence 999999999999888886666553211 123
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 68999999999998877888899999999999999999999999999999999864
No 59
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.9e-31 Score=194.29 Aligned_cols=165 Identities=29% Similarity=0.408 Sum_probs=132.4
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcc--cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-ccccchhhhcC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER-YRAITSAYYRG 83 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~ 83 (223)
..++.+||+++|.+|||||||++++.+... ...+ ++++.++....+.+++..+.+.+|||+|... +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445679999999999999999999996443 2222 3455666677777888889999999999776 45566778899
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
++++++|||+++..+++.+..|+..+... .
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~--------------------------------------------------~ 141 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRA--------------------------------------------------R 141 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTS--------------------------------------------------G
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHH--------------------------------------------------h
Confidence 99999999999999999988665544221 1
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+.+.+.+..++.+.++...++++++|||++|.|++++|++|++.
T Consensus 142 ~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 12368999999999998777888888888888999999999999999999999999763
No 60
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=1.2e-30 Score=193.26 Aligned_cols=167 Identities=38% Similarity=0.700 Sum_probs=141.5
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45789999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.+++.++..+..|+..+..... .....+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~ 117 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQAS-----------------------------------------------PRDPEN 117 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHC-----------------------------------------------CSSGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcc-----------------------------------------------cccCCC
Confidence 999999999998888877665533211 111136
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+. .+....++...++. ..+++++++||+++.|++++|++|.+.
T Consensus 118 ~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 118 FPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp SCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999997 35667788888887 668899999999999999999999864
No 61
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=191.61 Aligned_cols=164 Identities=34% Similarity=0.550 Sum_probs=140.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
..+.++|+|+|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++.++++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34569999999999999999999999988777777765544 45666788888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||+++..++..+..|+..+.... ...+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~ 119 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVK--------------------------------------------------EDEN 119 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHT--------------------------------------------------TCSC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCC
Confidence 99999999999988886666553211 1236
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999998877888899999999999999999999999999999999864
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=8.2e-31 Score=190.05 Aligned_cols=169 Identities=36% Similarity=0.674 Sum_probs=128.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
..++.++|+++|.+|||||||++++.+..+...+.++.+.++....+.++ +....+.+||+||+..+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34568999999999999999999999999888888888888877777776 56789999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|.+++.++..+..|+..+.... .....
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------------------------------------------~~~~~ 116 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHA-----------------------------------------------NVNSP 116 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-----------------------------------------------CCSCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHh-----------------------------------------------cccCc
Confidence 9999999999999988887766553321 11112
Q ss_pred CCceEEEeecccchh-hccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLR-HLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+. ..+.+..++.+.++. ..+.+++++||+++.|++++|++|.+.
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 478999999999995 445567888888887 567889999999999999999999864
No 63
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-30 Score=185.94 Aligned_cols=163 Identities=30% Similarity=0.433 Sum_probs=136.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|||||||++++.+..+...+.++.+.++ ......++..+.+.+||+||+..+..+...+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888777767765544 3445567788899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.+++.+++.+..|++.+.+... ...+.|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~-------------------------------------------------~~~~~p 111 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKG-------------------------------------------------DVESIP 111 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC----------------------------------------------------CCC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-------------------------------------------------CCCCCC
Confidence 9999998888888766655533110 113689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus 112 ii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 164 (172)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred EEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 99999999998877888888889999999999999999999999999999875
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=190.17 Aligned_cols=163 Identities=33% Similarity=0.542 Sum_probs=129.0
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
.....+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 455679999999999999999999999887777777765444 5566678888899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 87 ALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
+++|||++++.++..+. .|+..+ ....
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~- 122 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEI---------------------------------------------------RCHC- 122 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-
Confidence 99999999999988885 454444 2222
Q ss_pred CCceEEEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+ .+.+..++...++...+. ++++|||+++.|++++|++|++.
T Consensus 123 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 2789999999999975 256778889999998887 89999999999999999999764
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=4e-30 Score=189.83 Aligned_cols=164 Identities=31% Similarity=0.510 Sum_probs=137.3
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
.+....+||+++|.+|||||||++++.+..+...+.++.+.++. ..+.+++..+.+.+||+||+..+..++..+++++|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 34456799999999999999999999999988777777766664 34667888889999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 86 GALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
++++|||++++.++..+ ..|...+ ....
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~ 127 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEV---------------------------------------------------KHFC 127 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC
Confidence 99999999999888888 4444333 3222
Q ss_pred CCCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+. +.+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus 128 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 128 -PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp -TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 36899999999999753 45777888999999888 89999999999999999999874
No 66
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.1e-30 Score=194.22 Aligned_cols=162 Identities=32% Similarity=0.568 Sum_probs=134.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
..+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 45689999999999999999999999988777777776544 45566788888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 88 LLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
++|||++++.++..+. .|+..+ .... .
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~ 112 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPEL---------------------------------------------------RRFA-P 112 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-T
T ss_pred EEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-C
Confidence 9999999999988885 455544 2222 2
Q ss_pred CceEEEeecccchhhccC--------CChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRA--------VPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+.+. +..++...++...+. +++++||+++.|++++|++|++.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHH
Confidence 689999999999976432 467888899998886 89999999999999999999864
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=2e-31 Score=197.48 Aligned_cols=163 Identities=30% Similarity=0.507 Sum_probs=103.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEEcCe--EEEEEEEeCCCCccccccchhhhcCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVDQK--TIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
...++|+|+|.+|||||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||+..+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 776667677776777777777776 88999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|++++|||.+++.++..+..|+..+.. ..
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~ 126 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKS---------------------------------------------------AR 126 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hh
Confidence 999999999999998888866655533 22
Q ss_pred C---CCceEEEeecccchhh-ccCCChHHHHHHHHHcCCeEEEeecCC-CCCHHHHHHHHHhh
Q psy15625 165 D---QNIVIMLVGNKSDLRH-LRAVPADEAKTFAERNNLSFIETSALD-STNVETAFQNILTA 222 (223)
Q Consensus 165 ~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~i~~~ 222 (223)
. .++|+++|+||+|+.+ .+.+..++.+.++...+++++++||++ +.|++++|++|.+.
T Consensus 127 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp SCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred cccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence 2 4789999999999987 678888999999999999999999999 99999999999764
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=8e-30 Score=185.54 Aligned_cols=160 Identities=32% Similarity=0.540 Sum_probs=135.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|||||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 579999999999999999999999888777767765444 4556678888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 90 VYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 90 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
|||.+++.++..+. .|+..+ ..... +.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~~-~~ 110 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEV---------------------------------------------------RHHCP-NT 110 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHST-TS
T ss_pred EEECCChhhHHHHHHHHHHHH---------------------------------------------------HHhCC-CC
Confidence 99999998888876 444433 22222 68
Q ss_pred eEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+. +.+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus 111 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 111 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence 99999999999753 46778888899999987 89999999999999999999864
No 69
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.6e-30 Score=188.60 Aligned_cols=163 Identities=31% Similarity=0.510 Sum_probs=131.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
+....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 3456789999999999999999999999888777777665553 346678888899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 87 ALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
+++|||++++.++..+ ..|+..+ ....
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~- 127 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEV---------------------------------------------------KHFC- 127 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHS-
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-
Confidence 9999999999888888 4444433 2222
Q ss_pred CCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+. +.+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus 128 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 128 PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 36899999999999753 45777888889988888 89999999999999999999864
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1e-29 Score=185.44 Aligned_cols=162 Identities=32% Similarity=0.533 Sum_probs=135.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|.+|||||||+++|.+..+...+.++.+ +.......+++..+.+.+||+||+..+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999988777766664 444566678888889999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||+++..++..+..|+..+... ....+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~ 110 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRV--------------------------------------------------KDSEDV 110 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTCSCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCC
Confidence 999999999998888666655331 112478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+ +....++...++...+++++++||+++.|++++|++|.+.
T Consensus 111 p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 111 PMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp CEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999974 5667888999999999999999999999999999999864
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=6.9e-31 Score=196.18 Aligned_cols=165 Identities=28% Similarity=0.531 Sum_probs=135.9
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
.....+||+|+|.+|||||||+++|++..+...+.++.+.+......... +..+.+.+||+||+..+..++..+++++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34567999999999999999999999988877777777766666655444 34488999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|+|+++..++..+..|+..+ .....
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~ 115 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEF---------------------------------------------------QAVVG 115 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHHC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence 999999999999988888665555 33333
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 468999999999998877788888989999999999999999999999999999864
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=191.62 Aligned_cols=161 Identities=31% Similarity=0.523 Sum_probs=115.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3579999999999999999999999888777767665443 556667888889999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+|||.+++.++..+. .|++.+ .... .+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~ 138 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEV---------------------------------------------------NHFC-KK 138 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-SS
T ss_pred EEEECcCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CC
Confidence 999999998888875 454444 2222 36
Q ss_pred ceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+. +.+..++.+.++...++ +++++||+++.|++++|++|++.
T Consensus 139 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 899999999999753 36777888999999997 89999999999999999999864
No 73
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.2e-30 Score=195.39 Aligned_cols=166 Identities=33% Similarity=0.599 Sum_probs=141.4
Q ss_pred CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
+.+......+||+++|.+|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||+||+..+..++..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 44556667899999999999999999998777777777788888888888888999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
+++++++|||.++..++..+..|+..+..
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------- 115 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVR--------------------------------------------------- 115 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHH---------------------------------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 99999999999999999888866665532
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.. .++|+++|+||+|+.+.+. ..+...++...+++++++||+++.|++++|++|.+.
T Consensus 116 ~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 116 VC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp HS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred hC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22 2689999999999976332 235667788889999999999999999999998764
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.4e-29 Score=187.40 Aligned_cols=161 Identities=31% Similarity=0.516 Sum_probs=133.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||+++++++.+...+.++.+ +.....+.+++..+.+.+||+||+..+..+...+++++|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4579999999999999999999999988777767664 444556667888889999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+|||.++..++..+. .|+..+ .... .+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~ 134 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEV---------------------------------------------------RHHC-PN 134 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-SS
T ss_pred EEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CC
Confidence 999999999988886 454444 2222 37
Q ss_pred ceEEEeecccchhhcc------------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLR------------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+ .+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus 135 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999997533 3777888899998886 59999999999999999999875
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=5.3e-30 Score=188.19 Aligned_cols=170 Identities=21% Similarity=0.247 Sum_probs=128.8
Q ss_pred ccccceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------ccccceeeeEEEEE-EEcCeEEEEEEEeCCCCccc
Q psy15625 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------SKSTIGVEFATRSI-QVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~ 73 (223)
....++.+||+++|.+|||||||++.+.+...... ..++.+.++....+ .+++..+.+.+|||||+..+
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 34556789999999999999999987776543321 22344444443333 45677889999999999999
Q ss_pred cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625 74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV 153 (223)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 153 (223)
..++..+++++|++++|||.+++.+......+.. +
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~---------------------------------------------l 122 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRN---------------------------------------------M 122 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHH---------------------------------------------H
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHH---------------------------------------------H
Confidence 9999999999999999999995543333322111 1
Q ss_pred HHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 154 ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..|+..+. ....++|+++|+||+|+.+ ....++.++++...++ +++++||+++.|++++|++|++.
T Consensus 123 ~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 123 RENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp HHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence 14444442 2235799999999999976 4788899999999999 99999999999999999999864
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.6e-29 Score=184.18 Aligned_cols=163 Identities=29% Similarity=0.430 Sum_probs=129.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc--ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-ccccchhhhcCCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER-YRAITSAYYRGAV 85 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~ 85 (223)
++.+||+++|.+|||||||++++.+.. +...+ ++++.++....+.+++..+.+.+||++|... +..+...+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 22222 3455666667777888888999999999766 5567778899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
++++|||+++..+++.+..|+..+... ...
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~--------------------------------------------------~~~ 112 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRA--------------------------------------------------RQT 112 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hCC
Confidence 999999999999999988665544221 112
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+...+.+..++.+.++...++++++|||++|.|++++|+++++.
T Consensus 113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHH
Confidence 368999999999998777788888888888889999999999999999999998763
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.2e-30 Score=189.28 Aligned_cols=161 Identities=32% Similarity=0.551 Sum_probs=119.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4579999999999999999999999887766666654333 223345666778899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+|+|.+++.+++.+. .|+..+ .... .+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~ 112 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPEL---------------------------------------------------KHYA-PG 112 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-TT
T ss_pred EEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CC
Confidence 999999999888886 454444 2222 26
Q ss_pred ceEEEeecccchhhccC----------CChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRA----------VPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+. +..++...++...+. +++++||+++.|++++|++|.+.
T Consensus 113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999975433 477888899988886 89999999999999999999864
No 78
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=9.7e-29 Score=180.98 Aligned_cols=170 Identities=92% Similarity=1.320 Sum_probs=145.2
Q ss_pred CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY 81 (223)
Q Consensus 2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 81 (223)
++.+.+.+..++|+++|++|||||||++++.+..+...+.++++.++....+.+++..+.+.+||++|...+..+...++
T Consensus 20 ~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~ 99 (191)
T 1oix_A 20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 99 (191)
T ss_dssp ----CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred CCcccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh
Confidence 44555667789999999999999999999999998888889998888888888999888999999999999989999999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+.++++++|+|.++..+++.+..|+..+ .
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~ 128 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKEL---------------------------------------------------R 128 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------H
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------H
Confidence 9999999999999988887777554433 2
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.....+.|+++++||+|+.+.+....++.+.++.+.++.++++||+++.+++++|+.|.+.
T Consensus 129 ~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 129 DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp HHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222368999999999998877778888999999999999999999999999999998763
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-29 Score=186.09 Aligned_cols=164 Identities=30% Similarity=0.425 Sum_probs=136.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
....++|+++|.+|||||||+++|.+..+...+.++.+.++ ......++..+.+.+||+||+..+..++..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34579999999999999999999999888777767766444 34556778888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|||.+++.++..+..|++.+..... . ..+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~-~~~ 114 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKG------------------------------------------------S-VED 114 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHS------------------------------------------------C-GGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhc------------------------------------------------C-CCC
Confidence 999999998888888766554432111 0 126
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+.+ +.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 115 ~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (199)
T 2gf0_A 115 IPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTL 168 (199)
T ss_dssp SCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 89999999999975 5567788888999999999999999999999999999875
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=4.6e-29 Score=182.36 Aligned_cols=161 Identities=32% Similarity=0.530 Sum_probs=126.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..+++.++++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 468999999999999999999999888776666655443 4566678888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|+++..++..+..|+..+.... ...++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~p 128 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVK--------------------------------------------------DSDDVP 128 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------TCSCCC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--------------------------------------------------CCCCCe
Confidence 999999999888886666552211 113689
Q ss_pred EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+ +....++.++++...+++++++||+++.|++++|++|.+.
T Consensus 129 ~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 129 MVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp EEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999976 5677889999999999999999999999999999999864
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=4.9e-29 Score=177.77 Aligned_cols=160 Identities=33% Similarity=0.555 Sum_probs=135.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 90 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (223)
.+||+++|.+|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999888776666665433 55666788888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 170 (223)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 170 (223)
+|.++..++..+..|+..+.... ...++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~--------------------------------------------------~~~~~p~ 111 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVK--------------------------------------------------DSDDVPM 111 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------TCSCCCE
T ss_pred EECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCCCcE
Confidence 99999988888886666553211 1136899
Q ss_pred EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+||+|+.+ +....++.++++...+++++++||+++.|++++|++|.+.
T Consensus 112 iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 112 VLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp EEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred EEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999876 5567888999999999999999999999999999999864
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1e-28 Score=181.94 Aligned_cols=164 Identities=93% Similarity=1.330 Sum_probs=140.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+..+...+++.++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 46789999999999999999999999988888888888888888888999989999999999999988999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.++..++..+..|+..+ ......+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~ 110 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKEL---------------------------------------------------RDHADSN 110 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCC
Confidence 9999999988887777554433 2222246
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++++||+|+.+.+....++.+.++...++.++++||+++.|++++|++|.+.
T Consensus 111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999998877778888999999999999999999999999999998763
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=2.7e-29 Score=184.76 Aligned_cols=166 Identities=17% Similarity=0.336 Sum_probs=123.5
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA 84 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 84 (223)
.+..+..||+|+|.+|||||||+++|++..+.. .+.++.+.... . +++..+.+.+||+||+..+..++..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--T--FEKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--E--EEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--E--EEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 455567999999999999999999999999887 66677664432 2 345567899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|++++|||.++..++..+..|+..+.... .+....
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~---------------------------------------------~~~~~~ 122 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHE---------------------------------------------DIRREL 122 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSH---------------------------------------------HHHSBC
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhCh---------------------------------------------hhhhcc
Confidence 99999999999999999987776553310 111111
Q ss_pred --CCCceEEEeecccchhhccCCChHHHHHH------HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 165 --DQNIVIMLVGNKSDLRHLRAVPADEAKTF------AERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 165 --~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.. ..++.... +...++++++|||+++.|++++|++|.+.
T Consensus 123 ~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 123 PGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET 186 (199)
T ss_dssp TTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHH
Confidence 1378999999999997632 22222221 13467789999999999999999999864
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=1.4e-28 Score=181.17 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=118.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.++|+++|++|||||||++++.+..+. .+.++.+.+. ..+.+++ +.+.+|||||+..+..++..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 3445554443 3444554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+... ....++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~ 127 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTD--------------------------------------------------ETIANV 127 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC--------------------------------------------------GGGTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC--------------------------------------------------cccCCC
Confidence 999999999999888666544221 112378
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH-----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+ .+..+++++++.. .++++++|||++|+|++++|++|.+.
T Consensus 128 piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 128 PILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999975 4567777776542 34579999999999999999999864
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=4.5e-28 Score=177.28 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=123.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|++|||||||++++.+..+. .+.++.+.+ ...+.+++ +.+.+||+||+..+..++..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999998875 344555443 44555555 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+.. .....++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 125 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFN--------------------------------------------------IAELKDV 125 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred EEEECCChHHHHHHHHHHHHHHc--------------------------------------------------chhhcCC
Confidence 99999999999988866654422 1112468
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+ ....+++.+.... .++++++|||++++|++++|++|.+.
T Consensus 126 piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 126 PFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 9999999999975 4556666665432 35679999999999999999999864
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=3.9e-28 Score=177.27 Aligned_cols=158 Identities=22% Similarity=0.383 Sum_probs=123.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+|+|.+|||||||+++|.+..+...+.++.+.++.. +....+.+.+||+||+..+...+..+++++|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE----EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 456999999999999999999999998877777777665533 2334578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++..++..+..|+..+.. .....++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 125 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLD--------------------------------------------------KPQLQGI 125 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------CcccCCC
Confidence 99999999999888766554422 1112478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+. ...++...... ..+++++++||+++.|++++|++|.+.
T Consensus 126 piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 126 PVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp CEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999752 22233222211 234579999999999999999999875
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.5e-28 Score=176.69 Aligned_cols=161 Identities=20% Similarity=0.349 Sum_probs=123.4
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCc-ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
..+.+||+++|.+|||||||+++|.+.. +...+.++.+ +....+.++ ...+.+||+||+..+...+..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3456899999999999999999999887 4455555554 334444444 3689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.++..++..+..|+..+..... ....
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------------------~~~~ 125 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPD------------------------------------------------IKHR 125 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTT------------------------------------------------TTTS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChh------------------------------------------------hccC
Confidence 9999999999888888766554422110 0013
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+ ....++...... ..+++++++||+++.|++++|++|.+.
T Consensus 126 ~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 126 RIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp CCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 789999999999975 344556665553 236789999999999999999999875
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=4.4e-28 Score=175.92 Aligned_cols=159 Identities=19% Similarity=0.346 Sum_probs=121.1
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG 86 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 86 (223)
...+.+||+++|.+|||||||+++|.+..+ ..+.++.+... ..+.++ ...+.+||+||+..+..++..+++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 344569999999999999999999999887 44446655443 333343 3789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|+|.++..++..+..|+..+.. .....
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~ 121 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLA--------------------------------------------------HEDLR 121 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHT--------------------------------------------------CGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------ChhhC
Confidence 9999999999999888766554422 11124
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++|+||+|+.+ ....++...... ..+++++++||+++.|++++|++|.+.
T Consensus 122 ~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 122 KAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 789999999999965 233444444331 235689999999999999999999864
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.2e-28 Score=175.58 Aligned_cols=157 Identities=19% Similarity=0.342 Sum_probs=120.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||++++.+..+.. +.++.+.. ...+.++ ...+.+||+||+..+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999888743 44555433 3344444 568999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+.. .....++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 109 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLE--------------------------------------------------EEELRKA 109 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------chhhCCC
Confidence 99999999998888765554422 1112478
Q ss_pred eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++++|++|.+.
T Consensus 110 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 110 ILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp EEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence 999999999997632 223332222 2345689999999999999999999864
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=5.3e-29 Score=177.70 Aligned_cols=154 Identities=19% Similarity=0.363 Sum_probs=117.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (223)
+||+++|.+|||||||++++.+..+.. +.++.+.. ...+ ......+.+||+||+..+..++..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887754 44555532 2333 334578999999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
|.+++.++..+..|+..+.. .....+.|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~pii 105 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLA--------------------------------------------------EDELRDAVLL 105 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTCEEE
T ss_pred ECCCHHHHHHHHHHHHHHHh--------------------------------------------------chhhcCCeEE
Confidence 99999999888866554422 1122468999
Q ss_pred EeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+. ...++...... ..+++++++||+++.|++++|++|.+.
T Consensus 106 lv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 106 VFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp EEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred EEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999652 22233222211 134579999999999999999999864
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1e-27 Score=174.64 Aligned_cols=157 Identities=19% Similarity=0.360 Sum_probs=121.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||++++.+.. ...+.++.+.. ...+.++ ...+.+||+||+..+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888 55566666543 3344443 468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+.. .....+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 120 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLV--------------------------------------------------EERLAGA 120 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHh--------------------------------------------------ChhcCCC
Confidence 99999999999888866554422 1112468
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+. ...++..+... ..+++++++||+++.|++++|++|.+.
T Consensus 121 piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 121 TLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp EEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999763 23334333322 245689999999999999999999864
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.1e-28 Score=175.39 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=119.1
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|.+|||||||++++.++.+. .+.++.+... ..+.++ ...+.+||+||+..+..++..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988776 4455655433 333343 378999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++++++..+..|+..+... ....+.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~ 118 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAH--------------------------------------------------EDLRKA 118 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTS--------------------------------------------------GGGTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhc--------------------------------------------------hhhCCC
Confidence 999999999999888666544221 112368
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+ ....++..+... ..+++++++||+++.|++++|++|++.
T Consensus 119 piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (187)
T 1zj6_A 119 GLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 175 (187)
T ss_dssp EEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred eEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHH
Confidence 9999999999975 234445444432 245689999999999999999999874
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.1e-28 Score=179.34 Aligned_cols=158 Identities=19% Similarity=0.357 Sum_probs=114.8
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
..+.+||+++|.+|||||||++++.++.+.. +.++.+ +....+.. ..+.+.+||+||+..+..++..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999887653 344544 33333333 447899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.+++.++..+..|+..+.. .....+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~--------------------------------------------------~~~~~~ 130 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQ--------------------------------------------------EDELRD 130 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhc--------------------------------------------------ccccCC
Confidence 999999999999888866554422 111236
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+++|+||+|+.+. ...++...... ..++++++|||+++.|++++|++|++.
T Consensus 131 ~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 131 AVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHH
Confidence 899999999999653 22233222211 234579999999999999999999874
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=8.5e-28 Score=174.48 Aligned_cols=157 Identities=23% Similarity=0.364 Sum_probs=119.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
++.++|+++|++|||||||++++.+..+. .+.++.+.. ...+.++ .+.+.+||+||+..+...+..+++++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999988653 334555533 3344444 568999999999999988999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+. ......++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~--------------------------------------------------~~~~~~~~ 118 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELL--------------------------------------------------EEEKLSCV 118 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHT--------------------------------------------------TCGGGTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHH--------------------------------------------------hChhhcCC
Confidence 9999999999988876555431 11122468
Q ss_pred eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.. ..++..+.. ...++++++|||+++.|++++|++|++.
T Consensus 119 piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 119 PVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (181)
T ss_dssp CEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHH
Confidence 999999999997632 233332221 1235679999999999999999999865
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=2.5e-28 Score=179.46 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=115.8
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEE--EE-cCeEEEEEEEeCCCCccccccc---hh
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QV-DQKTIKAQIWDTAGQERYRAIT---SA 79 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~D~~G~~~~~~~~---~~ 79 (223)
.+.++.+||+++|.+|||||||++++.+.... . ++.+.++..... .+ ++..+.+.+||++|+..+.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 44556799999999999999999988875432 2 333333333322 23 2566789999999999987776 89
Q ss_pred hhcCCcEEEEEEeCCCc--ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 80 YYRGAVGALLVYDIAKH--LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
++++++++++|||.++. +++..+..|+.
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~-------------------------------------------------- 121 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVS-------------------------------------------------- 121 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHH--------------------------------------------------
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHH--------------------------------------------------
Confidence 99999999999999987 33444443332
Q ss_pred HHhhhccCCCceEEEeecccchhh-------ccCCChHHHHHHHH----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRH-------LRAVPADEAKTFAE----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.. ...+.|+++|+||+|+.+ .+.+..++.+.++. ..++++++|||++ .|++++|+.+++.
T Consensus 122 -~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 122 -KAYK-VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp -HHHH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred -HHHh-cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 2211 123789999999999643 34455566677777 6788999999999 9999999999874
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=1.1e-28 Score=179.64 Aligned_cols=160 Identities=19% Similarity=0.415 Sum_probs=113.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEE---cCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
.+||+++|++|||||||++++.+. .+...+.++.+.++....+.+ ++..+.+.+||++|+..+..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444455677776665555443 235678999999999999999999999999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625 86 GALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA 164 (223)
Q Consensus 86 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (223)
++++|||++++ .++..+..|+..+ ....
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~ 110 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNI---------------------------------------------------KARA 110 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHH---------------------------------------------------HHHC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHH---------------------------------------------------HhhC
Confidence 99999999887 4677777565544 2221
Q ss_pred CCCceEEEeecccchhhccCCC---hHHHHHHHHHcCCe----EEEeecCCCC-CHHHHHHHHHhh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVP---ADEAKTFAERNNLS----FIETSALDST-NVETAFQNILTA 222 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+.+... .+....++...+++ ++++||+++. +++++++.|.+.
T Consensus 111 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 111 -SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp -TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 268999999999986533221 22344555556776 9999999997 999999998753
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=6.9e-27 Score=184.90 Aligned_cols=161 Identities=30% Similarity=0.518 Sum_probs=135.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||+..+......+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3468999999999999999999999988777777765444 556667888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+|||++++.++..+. .|+..+ ..... +
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~~-~ 259 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEV---------------------------------------------------RHHCP-N 259 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHCT-T
T ss_pred EEEeCCCHHHHHHHHHHHHHHH---------------------------------------------------HhhCC-C
Confidence 999999999888875 344333 32222 7
Q ss_pred ceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+. +.+..++...++...++ ++++|||+++.|++++|+.|.+.
T Consensus 260 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 260 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 899999999999653 56788899999999997 89999999999999999999864
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=2.9e-28 Score=177.99 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=119.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||++++.+..+.. +.++.+.. ...+..+ ...+.+||+||+..+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999998877653 44555433 3333343 568999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.++++++..+..|+..+.. .....+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 124 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLD--------------------------------------------------EDELRKS 124 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHT--------------------------------------------------CSTTTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHh--------------------------------------------------hhhcCCC
Confidence 99999999998888755544321 1122478
Q ss_pred eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++++|++|.+.
T Consensus 125 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 125 LLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp EEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence 999999999997532 223332221 2235579999999999999999999764
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.1e-27 Score=168.36 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=110.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhhc--
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYYR-- 82 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~-- 82 (223)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776555445444444455555544 5789999999877653 2344554
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
+++++++|+|.++.+ ....| +..+..
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~---------------------------------------------------~~~~~~ 106 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYL---------------------------------------------------TLQLME 106 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHH---------------------------------------------------HHHHHH
T ss_pred CCCEEEEEecCCchh---HhHHH---------------------------------------------------HHHHHh
Confidence 788999999987633 22222 222222
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+...+.+.. +.+.++...+++++++||+++.|++++|++|.+.
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 107 ---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred ---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 2689999999999976555543 4677888889999999999999999999999864
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=4.8e-30 Score=189.73 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=130.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
...+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999998888766666654333 445556777788899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
+|+|++++.++..+. .|+..+ ..... +
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l---------------------------------------------------~~~~~-~ 134 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEV---------------------------------------------------RHHCP-N 134 (204)
Confidence 999999988887775 443333 22222 6
Q ss_pred ceEEEeecccchhhcc------------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLR------------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+.+ .+..++...++...++ +++++||+++.|++++|++|++.
T Consensus 135 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 8999999999997532 4556677778888887 89999999999999999999875
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=3.9e-27 Score=170.98 Aligned_cols=157 Identities=20% Similarity=0.387 Sum_probs=117.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|++|||||||++++.+..+ ..+.++.+... ..+.++ ...+.+||+||+..+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998877 44456655433 333343 378999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|+|.+++.++..+..|+..+.. .....+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 120 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQ--------------------------------------------------EEELQDA 120 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTT--------------------------------------------------SSTTSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHc--------------------------------------------------ChhhCCC
Confidence 99999999998888755554421 1112478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+. ...++....... .+++++++||+++.|++++|++|.+.
T Consensus 121 piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 121 ALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177 (183)
T ss_dssp EEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 99999999999752 334444433321 24579999999999999999999864
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=5.6e-27 Score=174.44 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=110.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe-EEEEEEEeCCCCccccc-cchhhhcCCcE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-TIKAQIWDTAGQERYRA-ITSAYYRGAVG 86 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ 86 (223)
...+||+++|.+|||||||+++|++..+...+.+ .+.+.. .+.+++. .+.+.+|||||+..+.. ++..+++++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4578999999999999999999999887766643 333333 3555543 67899999999998887 78888999999
Q ss_pred EEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh--c
Q psy15625 87 ALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD--H 163 (223)
Q Consensus 87 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~ 163 (223)
+++|+|.++.. ++.....++..+ +.. .
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~ 111 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQV--------------------------------------------------LIDSMA 111 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHH--------------------------------------------------HHHHHT
T ss_pred EEEEEECCCcCHHHHHHHHHHHHH--------------------------------------------------Hhhhhh
Confidence 99999998743 344443322211 111 1
Q ss_pred cCCCceEEEeecccchhhccCC----------------------------------ChHHHHHHHHHc---CCeEEEeec
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAV----------------------------------PADEAKTFAERN---NLSFIETSA 206 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~----------------------------------~~~~~~~~~~~~---~~~~~~~Sa 206 (223)
...++|+++|+||+|+.+.+.. ..++.+.++... ++++++|||
T Consensus 112 ~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SA 191 (214)
T 2fh5_B 112 LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSA 191 (214)
T ss_dssp STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBC
T ss_pred cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeec
Confidence 2346899999999999753321 000111111111 667999999
Q ss_pred CCC------CCHHHHHHHHHhhC
Q psy15625 207 LDS------TNVETAFQNILTAN 223 (223)
Q Consensus 207 ~~~------~~i~~~~~~i~~~~ 223 (223)
+++ .|++++|++|.+.+
T Consensus 192 k~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 192 KGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp C-------CCBCHHHHHHHHHHC
T ss_pred cCCCccccccChHHHHHHHHHhC
Confidence 999 99999999998864
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-27 Score=182.93 Aligned_cols=166 Identities=28% Similarity=0.395 Sum_probs=116.4
Q ss_pred ccccceeEEEEEEcCC---------CCcHHHHHHHHhh---Ccccccccccc-eeeeEEEE--------------EEEcC
Q psy15625 5 EDEYDYLFKVVLIGDS---------GVGKSNLLSRFTR---NEFNLESKSTI-GVEFATRS--------------IQVDQ 57 (223)
Q Consensus 5 ~~~~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~ 57 (223)
+....+.+||+|+|.+ |||||||+++|++ ..+...+.++. +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 4455667999999999 9999999999998 44544444443 22222111 11355
Q ss_pred eEEEEEEEe-----------------------CCCCccccccchhhhc---------------------CCcEEEEEEeC
Q psy15625 58 KTIKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVYDI 93 (223)
Q Consensus 58 ~~~~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~ 93 (223)
..+.+.+|| ++|+..+..++..+++ ++|++++|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 677899999 5666666667777766 78999999999
Q ss_pred CCc--ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625 94 AKH--LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 171 (223)
Q Consensus 94 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i 171 (223)
+++ .+++.+..|+..+... ....++|++
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~--------------------------------------------------~~~~~~pii 202 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQ--------------------------------------------------LAKTKKPIV 202 (255)
T ss_dssp BC----CHHHHHHHHHHHHHH--------------------------------------------------HHHTTCCEE
T ss_pred CCCchhhHHHHHHHHHHHHHH--------------------------------------------------hccCCCCEE
Confidence 988 8888888766655321 012368999
Q ss_pred EeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 172 LVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 172 vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+||+|+.+.+.+ ++.+.++.. .+++++++||+++.|++++|++|++.
T Consensus 203 lV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 203 VVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp EEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999654333 567777766 48899999999999999999999864
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=2.1e-26 Score=166.25 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=116.5
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA 87 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 87 (223)
.+..++|+++|.+|||||||++++.+..+...+.++.+.++....+.+++. .+.+||+||+..+..++..+++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 456789999999999999999999998887766666655555555556554 568999999999999998999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 167 (223)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
++|+|.++......... +..+ ...+
T Consensus 83 i~v~d~~~~~~~~~~~~----------------------------------------------------l~~~---~~~~ 107 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEA----------------------------------------------------INHA---KAAN 107 (178)
T ss_dssp EEEEETTCCCCHHHHHH----------------------------------------------------HHHH---GGGS
T ss_pred EEEEECCCCCcHHHHHH----------------------------------------------------HHHH---HhCC
Confidence 99999887544333221 1111 1136
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHHc-------C--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAERN-------N--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+|+++|+||+|+.+. ..++........ + ++++++||+++.|++++|++|++.
T Consensus 108 ~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 108 VPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp CCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 899999999998652 223333333222 2 579999999999999999999864
No 105
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=9.8e-26 Score=172.14 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=115.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc------hhhh-
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT------SAYY- 81 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------~~~~- 81 (223)
.+.++|+++|.+|||||||+++|++..+.....+..+.+.....+.. ....+.+||+||+..+.... ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35789999999999999999999998776555555444444444433 34689999999987776532 4444
Q ss_pred -cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 82 -RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 82 -~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
..+|++++|+|.++.++... | ...+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~---~---------------------------------------------------~~~l 106 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY---L---------------------------------------------------LLEI 106 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH---H---------------------------------------------------HHHH
T ss_pred hcCCCEEEEEeCCCchhhHHH---H---------------------------------------------------HHHH
Confidence 57888888888887543221 2 1222
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.. .++|+++|+||+|+...+.+.. +...++...|++++++||+++.|++++|+++.+.
T Consensus 107 ~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 107 LE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp HT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred Hh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 22 2689999999999987655553 5788888999999999999999999999998764
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=1.1e-25 Score=169.05 Aligned_cols=162 Identities=20% Similarity=0.173 Sum_probs=108.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc---------ccchh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR---------AITSA 79 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~ 79 (223)
...++|+|+|.+|||||||+++|++..+.....+..+.+......... ...+.+|||||+.... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 457999999999999999999999987753333332333333333233 3678999999984311 11123
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
++..+|++++|+|.++..++... .+. .|+..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~-~~~------------------------------------------------~~~~~ 135 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIK-EQI------------------------------------------------NLFYS 135 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHH-HHH------------------------------------------------HHHHH
T ss_pred hhccccEEEEEEecccccCcchH-HHH------------------------------------------------HHHHH
Confidence 46777888888888877665311 111 22333
Q ss_pred hhhccCCCceEEEeecccchhhccCCChH---HHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPAD---EAKTFAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.... .++|+++|+||+|+.+.+.+..+ ....++...+ ++++++||+++.|++++|++|++.
T Consensus 136 l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 136 IKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp HHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence 33221 26899999999999876666554 4566666777 889999999999999999998764
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=8e-26 Score=176.90 Aligned_cols=160 Identities=21% Similarity=0.303 Sum_probs=123.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc---cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-----cccchhhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL---ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-----RAITSAYY 81 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~ 81 (223)
..+||+++|.+|||||||++++.++.... .+.++.+ .....+.+.+ .+.+.+||+||+..+ ..+...++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999998873322 2334443 3334444444 678999999999888 77888899
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+++|++++|||.++..+++.+..|.+.+.. +.
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~------------------------------------------------l~ 110 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQ------------------------------------------------LR 110 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHH------------------------------------------------HH
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHH------------------------------------------------HH
Confidence 999999999999999999998866554422 22
Q ss_pred hccCCCceEEEeecccchhh--ccC----CChHHHHHHHHHcC---CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRH--LRA----VPADEAKTFAERNN---LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.. ..++|+++|+||+|+.+ .+. +..++.++++...| ++++++||++ .++.++|..+++.
T Consensus 111 ~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 111 KY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp HH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred Hh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 22 23689999999999975 333 55577888888887 7899999999 8999999888763
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.5e-25 Score=163.36 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=114.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhhc-
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYYR- 82 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~- 82 (223)
+.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+.. +...+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999999776555556655565555555543 6789999999877642 3444443
Q ss_pred -CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 83 -GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 83 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
.++++++++|.++ ++... .|+..+.
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~---------------------------------------------------~~~~~~~ 109 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNL---------------------------------------------------YLTLQLM 109 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHH---------------------------------------------------HHHHHHH
T ss_pred cCCCEEEEEecchh---HHHHH---------------------------------------------------HHHHHHH
Confidence 4788888888754 33333 2333332
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. .+.|+++|+||+|+.+.+.+. .+.+.++...+++++++||+++.|++++|+++++.
T Consensus 110 ~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 166 (188)
T 2wjg_A 110 E---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 166 (188)
T ss_dssp T---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred h---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 2 368999999999998755544 46778888889999999999999999999999764
No 109
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=5.7e-26 Score=173.19 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=112.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----------cchhhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----------ITSAYY 81 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 81 (223)
.+|+++|.+|||||||+|+|++........+..+.+.....+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998876666677666666666666554 789999999876654 333445
Q ss_pred --cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 82 --RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 82 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
+.+|++++|+|.++.+....+. . .
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~---------------------------------------------------~---~ 105 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT---------------------------------------------------S---Q 105 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH---------------------------------------------------H---H
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH---------------------------------------------------H---H
Confidence 6777777777776643322222 1 1
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+. ..++|+++|+||+|+.+.+... .....+....+++++++||+++.|++++|++|.+.
T Consensus 106 l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 106 LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 11 2278999999999998755433 34566778889999999999999999999999763
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=2.5e-26 Score=168.42 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=101.5
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC----------Cccc
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG----------QERY 73 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~ 73 (223)
.+.+.+..++|+++|.+|||||||+++|.+..+.....++.+.+........+. .+.+||||| +..+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHH
Confidence 334455679999999999999999999999876555555555554444444443 589999999 4444
Q ss_pred cccchhhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625 74 RAITSAYYRGA---VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY 150 (223)
Q Consensus 74 ~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 150 (223)
..+...+++.+ +++++|+|.++..+.....-
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------------------------------------------- 126 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQM---------------------------------------------- 126 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH----------------------------------------------
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHH----------------------------------------------
Confidence 44555555555 67777777766555443320
Q ss_pred hhhHHHHHHhhhccCCCceEEEeecccchhhccCCCh--HHHHH-HHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--DEAKT-FAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..|+. . .+.|+++|+||+|+.+.+.+.. +++.+ +....+.+++++||+++.|++++|++|.+.
T Consensus 127 ---~~~~~---~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 127 ---YEFLK---Y---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp ---HHHHH---H---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ---HHHHH---H---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 02221 1 3689999999999976433221 22322 222346789999999999999999999764
No 111
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=4.2e-26 Score=175.17 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=111.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhhc-
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYYR- 82 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~- 82 (223)
..++|+++|.+|||||||+|+|++........+.. +.......+.. ...+.+|||||+..+.. +...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35799999999999999999999876544444443 33333334454 56789999999877652 3445554
Q ss_pred -CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 83 -GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 83 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
.+|++++|+|.++.+.. . .|...+.
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~---------------------------------------------------~~~~~l~ 104 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---L---------------------------------------------------YLTTQLI 104 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---H---------------------------------------------------HHHHHHH
T ss_pred CCCCEEEEEecCCchHhH---H---------------------------------------------------HHHHHHH
Confidence 58888888888764322 2 1222222
Q ss_pred hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. .++|+++|+||+|+...+.+. .+...++...+++++++||+++.|++++|+++.+.
T Consensus 105 ~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 105 E---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp H---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred h---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2 378999999999998655554 46778888889999999999999999999999874
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=1.5e-25 Score=161.36 Aligned_cols=152 Identities=21% Similarity=0.205 Sum_probs=104.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SAY 80 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~ 80 (223)
+..+|+++|.+|||||||+++|.+..... ...+..+.++....+.+++. .+.+|||||+..+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45799999999999999999999876432 22344445555666666653 57999999976532211 124
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++.+|++++|+|.++..++.. . .|+..+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~---------------------------------------------------~~~~~~ 108 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-A---------------------------------------------------EIWPEF 108 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-H---------------------------------------------------HHCHHH
T ss_pred HHhCCEEEEEEECCCCCCHHH-H---------------------------------------------------HHHHHH
Confidence 677788888888777666442 2 233333
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
......++|+++|+||+|+.+... .++...+.+++++||+++.|++++|++|.+.
T Consensus 109 ~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 109 IARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp HHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 333334789999999999964211 1122346789999999999999999999864
No 113
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=176.33 Aligned_cols=156 Identities=20% Similarity=0.332 Sum_probs=113.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
..+||+|+|.+|||||||+++|.+..+.... ++.+..+ .. +....+.+.+|||||+..+..++..+++.+|++++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EE--EEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EE--EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999988865433 4444333 22 33345789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|||.++..++..+..++..+. ......++|
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~--------------------------------------------------~~~~~~~~p 268 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRML--------------------------------------------------AEDELRDAV 268 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHH--------------------------------------------------TCGGGTTCE
T ss_pred EEECCchHHHHHHHHHHHHHH--------------------------------------------------hhhccCCCe
Confidence 999999999988876554331 222234789
Q ss_pred EEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++|+||+|+.+.. ..+++...... .+++++++||+++.|++++|++|++.
T Consensus 269 iilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 269 LLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp EEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred EEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 99999999997532 23333322221 24579999999999999999999864
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=8.3e-25 Score=181.94 Aligned_cols=157 Identities=20% Similarity=0.377 Sum_probs=120.7
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 88 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 88 (223)
.+.+||+++|.+|||||||+++|++..+.. +.++.+.++. . +....+.+.+|||+|+..+..++..+++.+|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--E--EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--E--EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988543 3455554433 2 3345578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625 89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 168 (223)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
+|||.+++.++..+..|+..+.. .....++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 424 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIIN--------------------------------------------------DREMRDA 424 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------SGGGTTC
T ss_pred EEEECcchhHHHHHHHHHHHHhh--------------------------------------------------hhhcCCC
Confidence 99999999999999866554422 1112478
Q ss_pred eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
|+++|+||+|+.+. ...++...... ..++++++|||++|.|++++|++|.+.
T Consensus 425 p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 481 (497)
T 3lvq_E 425 IILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 481 (497)
T ss_dssp EEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999652 23333332221 123469999999999999999999874
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=6.5e-25 Score=155.84 Aligned_cols=149 Identities=20% Similarity=0.227 Sum_probs=101.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-------cccchhhhcC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-------RAITSAYYRG 83 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~ 83 (223)
.||+++|.+|+|||||++++.+..+.. ...+..+.+.....+..++. .+.+||+||+..+ ......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 589999999999999999999887532 22233334444445555443 7899999998763 3334456788
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|.++..+.... ++. .++..
T Consensus 80 ~~~~i~v~d~~~~~~~~~~--~~~-----------------------------------------------~~~~~---- 106 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADY--EVA-----------------------------------------------EYLRR---- 106 (161)
T ss_dssp CSEEEEEEESSSCCCHHHH--HHH-----------------------------------------------HHHHH----
T ss_pred CCEEEEEEECCCcccHhHH--HHH-----------------------------------------------HHHHh----
Confidence 9999999998875443221 111 11111
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.|+++|+||+|+.+.+ ++..+++ +.++ +++++||+++.|++++|++|.+.
T Consensus 107 --~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 107 --KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp --HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred --cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 268999999999997642 3344444 5677 79999999999999999999874
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.3e-24 Score=170.06 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=111.5
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----------
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYR---------- 74 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------- 74 (223)
.+..+.-.|+++|.+|||||||+|+|++..+..... +..+..........+ ....+.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 455667899999999999999999999988764432 222222222222222 15688999999986544
Q ss_pred ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625 75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154 (223)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (223)
.....+++.+|++++|+|.++..+.....
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~--------------------------------------------------- 112 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEE--------------------------------------------------- 112 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHH---------------------------------------------------
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHH---------------------------------------------------
Confidence 23344556666666666666655554444
Q ss_pred HHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+..+.. .+.|+++|+||+|+...+....+....+....+ .+++++||+++.|++++|+.|.+.
T Consensus 113 ~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 113 IYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKY 179 (308)
T ss_dssp HHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence 33444443 268999999999997334445666777777765 789999999999999999999864
No 117
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=2.4e-25 Score=171.50 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=109.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc----------chhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI----------TSAY 80 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~~ 80 (223)
.++|+++|.+|||||||+|+|++..+.....+..+.+.....+...+ ..+.+|||||+..+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999887666666655555555555443 46789999998776532 1112
Q ss_pred --hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625 81 --YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR 158 (223)
Q Consensus 81 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (223)
.+.+|++++|+|.++.+....+. .
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~------------------------------------------------------~ 106 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLT------------------------------------------------------L 106 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHH------------------------------------------------------H
T ss_pred HhhcCCCEEEEEecCCChHHHHHHH------------------------------------------------------H
Confidence 25677777777766533222221 1
Q ss_pred HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.. .++|+++|+||+|+.+.+.. ......+....+++++++||++|.|++++|++|.+.
T Consensus 107 ~l~~---~~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 107 QLLE---LGIPCIVALNMLDIAEKQNI-RIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp HHHH---HTCCEEEEEECHHHHHHTTE-EECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHHh---cCCCEEEEEECccchhhhhH-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 1221 16899999999999764443 234567788889999999999999999999999865
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=7.4e-26 Score=189.61 Aligned_cols=160 Identities=23% Similarity=0.287 Sum_probs=116.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEE------EE--cCeEEEEEEEeCCCCccccccchh
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI------QV--DQKTIKAQIWDTAGQERYRAITSA 79 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~D~~G~~~~~~~~~~ 79 (223)
....+||+++|.+|||||||++++++..+...+.++++.++..... .+ ++..+.+.+||+||+..+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4557999999999999999999999998887777887777665421 11 234678999999999999999999
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
+++.++++++|+|.++.+ .+..|+ ..
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~~~~~---------------------------------------------------~~ 143 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NKHYWL---------------------------------------------------RH 143 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GHHHHH---------------------------------------------------HH
T ss_pred HccCCcEEEEEEeCCCch---hHHHHH---------------------------------------------------HH
Confidence 999999999999987653 334333 33
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+..... +.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+.|.+.
T Consensus 144 l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 144 IEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp HHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHH
T ss_pred HHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHH
Confidence 333322 68999999999998777788888888888899999999999999999999998764
No 119
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=7.9e-26 Score=175.71 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=112.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccccc---ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc---cchhhhcCCcE
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLE---SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA---ITSAYYRGAVG 86 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~ 86 (223)
||+++|..|||||||++++.+...+.. ..++++.++.. ++ ..+.+++|||+|++++.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 689999999999999999886654332 34666655543 22 347899999999999964 35789999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625 87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 166 (223)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
+++|||+++. ..+....|.+ |+..+.... +
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~------------------------------------------------~l~~~~~~~-~ 105 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAM------------------------------------------------IIEYAYKVN-P 105 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHH------------------------------------------------HHHHHHHHC-T
T ss_pred EEEEEECCch-HHHHHHHHHH------------------------------------------------HHHHHhhcC-C
Confidence 9999999987 3333332222 222222222 3
Q ss_pred CceEEEeecccchhhc-------cCCChHHHHHHHHH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHL-------RAVPADEAKTFAER----NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++|+++++||+|+.+. +.+..++.++++.. .++.|+++||++ .++.+.|..+++.
T Consensus 106 ~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 106 SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence 7899999999999642 34555666677765 578999999997 6999999998864
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=1.7e-24 Score=166.76 Aligned_cols=153 Identities=22% Similarity=0.190 Sum_probs=113.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhh--c
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYY--R 82 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~ 82 (223)
.++|+++|++|||||||+++|++..+.....+..+.+.....+...+. .+.+||+||+..+.. +...++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 579999999999999999999998876666676666666666555543 589999999877665 344444 5
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|+|.++.+. .. .+...+..
T Consensus 81 ~~d~vi~v~D~~~~~~---~~---------------------------------------------------~~~~~~~~ 106 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NL---------------------------------------------------FLTLELFE 106 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HH---------------------------------------------------HHHHHHHH
T ss_pred CCcEEEEEecCCcchh---hH---------------------------------------------------HHHHHHHh
Confidence 7888888888766421 11 11222222
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. ..+|+++|+||+|+.+.+.... +...+....+++++++||+++.|++++|+.+.+.
T Consensus 107 ~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 107 M--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp T--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred c--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 1 1289999999999876544443 3777888889999999999999999999998764
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.92 E-value=1.2e-25 Score=163.97 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=110.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC-----------Cccccccchhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG-----------QERYRAITSAY 80 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~ 80 (223)
+||+++|.+|||||||++++.+..+...+.++.+... ..+... .+.+||+|| +..+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999987766666544333 223233 679999999 44455555566
Q ss_pred hcC-CcEEEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625 81 YRG-AVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR 158 (223)
Q Consensus 81 ~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (223)
++. ++++++++++.+..++..+ ..|...-.. . ....
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~--------------------------------------~----~~~~ 113 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI--------------------------------------P----IDVE 113 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCC--------------------------------------C----HHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCcc--------------------------------------H----HHHH
Confidence 666 6766666777666666665 434321000 0 0000
Q ss_pred HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-------EEEeecCCCCCHHHHHHHHHhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-------FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
........++|+++|+||+|+...+ .++.+.++.+.+.+ ++++||+++.|++++|++|.+.
T Consensus 114 ~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 114 FYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp HHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence 1111122478999999999997633 56778888888864 6999999999999999999864
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=3.7e-24 Score=156.60 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=104.3
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC----------Cccc
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG----------QERY 73 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~ 73 (223)
++.+....+||+++|.+|||||||++++++.... ...++.+.+........+. .+.+||+|| +..+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 3444556789999999999999999999998743 3334444444333333332 468999999 3334
Q ss_pred cccchhhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625 74 RAITSAYYRGA---VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY 150 (223)
Q Consensus 74 ~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 150 (223)
..+...+++.+ +++++|+|.++..+.....
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~----------------------------------------------- 124 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM----------------------------------------------- 124 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----------------------------------------------
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-----------------------------------------------
Confidence 44445555544 6666666665543322221
Q ss_pred hhhHHHHHHhhhccCCCceEEEeecccchhhcc--CCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+..|+... ++|+++|+||+|+.+.. ....++.+.++.. .+++++++||+++.|++++|++|.+.
T Consensus 125 --~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 125 --MVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191 (195)
T ss_dssp --HHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 01222221 68999999999986422 2233445555555 34789999999999999999999864
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.5e-24 Score=162.17 Aligned_cols=167 Identities=18% Similarity=0.134 Sum_probs=99.9
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccc---------
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERY--------- 73 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~--------- 73 (223)
.+.+....++|+|+|.+|||||||+++|++...........+.+......... .....+.+|||||....
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 34445567899999999999999999999986322222333333333333343 44567899999995332
Q ss_pred -cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 74 -RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 74 -~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
..+...+++.. ..+|++++++|++.+.+...
T Consensus 102 ~~~~~~~~~~~~------------------------------------------------~~~d~vi~v~d~~~~~~~~~ 133 (223)
T 4dhe_A 102 WEQLLSSYLQTR------------------------------------------------PQLCGMILMMDARRPLTELD 133 (223)
T ss_dssp HHHHHHHHHHHC------------------------------------------------TTEEEEEEEEETTSCCCHHH
T ss_pred HHHHHHHHHhcC------------------------------------------------cCcCEEEEEEeCCCCCCHHH
Confidence 22222222220 12344445555444322221
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++..+.. .++|+++|+||+|+.+.+.. ..++..+.... .+.+++++||+++.|++++|++|.+.
T Consensus 134 -~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 134 -RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp -HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 122333332 36899999999998642221 11222222222 46789999999999999999999764
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.2e-25 Score=165.37 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=101.4
Q ss_pred CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCccccc---ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc
Q psy15625 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT 77 (223)
Q Consensus 1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 77 (223)
|+|........++|+++|++|+|||||+++|.+..+... +.++.+.+ .....+.+||+||+..+...+
T Consensus 2 ~~~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~ 72 (218)
T 1nrj_B 2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKL 72 (218)
T ss_dssp --------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHH
T ss_pred CCCCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHH
Confidence 456666677789999999999999999999999876542 22322221 144578999999999998888
Q ss_pred hhhhcC----CcEEEEEEeCC-CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 78 SAYYRG----AVGALLVYDIA-KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 78 ~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
..+++. ++++++|+|.+ +..++.....|+..+..
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~----------------------------------------- 111 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS----------------------------------------- 111 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHH-----------------------------------------
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHh-----------------------------------------
Confidence 888877 89999999999 78888888766654422
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchhhccCCC------hHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP------ADEAKTFAERNNLSFIETSALDSTN 211 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 211 (223)
........++|+++|+||+|+.+.+... .+++..++...+++++++||+++.+
T Consensus 112 ------~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 112 ------ITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp ------HHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ------cccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 1111123478999999999997654433 3455666655566667777776643
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=8e-25 Score=177.00 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=111.4
Q ss_pred CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--
Q psy15625 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT-- 77 (223)
Q Consensus 1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-- 77 (223)
|+|++......++|+|+|.+|+|||||+++|++..+.. ...+..+.+.....+.+.+.. .+.+|||||+.++..+.
T Consensus 24 msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~ 102 (423)
T 3qq5_A 24 YTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRL 102 (423)
T ss_dssp CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCC
T ss_pred CccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHH
Confidence 66777777788999999999999999999999887632 233444445555555555443 78999999988776553
Q ss_pred -----hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 78 -----SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 78 -----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
..+++.+|++++|+|.... ....
T Consensus 103 ~~~~~~~~l~~aD~vllVvD~~~~---~~~~------------------------------------------------- 130 (423)
T 3qq5_A 103 RVEKARRVFYRADCGILVTDSAPT---PYED------------------------------------------------- 130 (423)
T ss_dssp CHHHHHHHHTSCSEEEEECSSSCC---HHHH-------------------------------------------------
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCh---HHHH-------------------------------------------------
Confidence 3467788888888887222 1222
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+..+... ++|+++|+||+|+.+.+.. +..+.+....+++++++||+++.|++++|++|.+.
T Consensus 131 --~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 131 --DVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp --HHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred --HHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 233333332 7899999999999864443 56666667778999999999999999999999864
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=5.8e-23 Score=159.94 Aligned_cols=155 Identities=22% Similarity=0.188 Sum_probs=101.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSA 79 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~ 79 (223)
....+|+++|.+|||||||+|+|++..+..... +..+....... +......+.+|||||.... ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999988754332 22222221222 2233568899999997753 233345
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE 159 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (223)
+++.+|++++|+|.++..+... .|+ +..
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i--------------------------------------------------~~~ 110 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELV--------------------------------------------------ARA 110 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHH--------------------------------------------------HHH
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHH--------------------------------------------------HHH
Confidence 6778888888888776544321 111 122
Q ss_pred hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.... .+.|+++|+||+|+.+.+. +........ ..+++++||+++.|++++++.|.+.
T Consensus 111 l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 111 LKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp HGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred HHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 22221 3689999999999864221 022333332 3478999999999999999999764
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=4.1e-23 Score=168.91 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=101.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----------ccc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----------AIT 77 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~ 77 (223)
+..+||+++|.+|||||||+|+|++.... ....+..+.+.....+..++. .+.+|||||+.... .++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999988754 223343334433344445544 58999999974322 222
Q ss_pred h-hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625 78 S-AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW 156 (223)
Q Consensus 78 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (223)
. .+++.+|++++|+|.++..+.+.. .|
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~----------------------------------------------------~~ 278 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK----------------------------------------------------RI 278 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH----------------------------------------------------HH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH----------------------------------------------------HH
Confidence 2 256667777777777666554443 22
Q ss_pred HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-H----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-E----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...+.. .++|+++|+||+|+.+.+....++..... . ..+++++++||++|.|++++|+.+.+.
T Consensus 279 ~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 279 AGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp HHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 332322 37899999999999765544333332222 2 236789999999999999999988754
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=1.8e-22 Score=165.82 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=90.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch--------hh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS--------AY 80 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~--------~~ 80 (223)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||+.++..... .+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3579999999999999999999987543 22334444444444555544 5789999999876554332 25
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++.+|++++|+|.+++.++..+..+. .++..+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~------------------------------------------------~~l~~l 341 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIR------------------------------------------------ELKAAH 341 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHH------------------------------------------------HHHHHC
T ss_pred cccCCEEEEEEECCCCcchhhhHHHH------------------------------------------------HHHHhc
Confidence 67777777777777766654322111 222222
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. ++|+++|+||+|+.+.... +.+.+......+++++||+++.|++++|++|.+.
T Consensus 342 ~-----~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 342 P-----AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp T-----TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred C-----CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 2 6899999999999753322 2233444334689999999999999999998763
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=9e-23 Score=167.77 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=107.5
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCC----------Ccccccc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAG----------QERYRAI 76 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~ 76 (223)
.+..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++. .+.+||||| ++.+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 345799999999999999999999977532 233333333333344445444 789999999 3444444
Q ss_pred chh-hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 77 TSA-YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 77 ~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
... +++.+|++++|+|.++..+.... .
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~----------------------------------------------------~ 297 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDK----------------------------------------------------R 297 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH----------------------------------------------------H
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHH----------------------------------------------------H
Confidence 442 56777777777777664432221 2
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc-----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-----NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+...+.. .++|+++|+||+|+.+.+....++..+.+.+. +++++++||++|.|++++|+.+.+.
T Consensus 298 ~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 298 IAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp HHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 2222222 36899999999999876666666766666654 5789999999999999999998764
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=4.2e-22 Score=158.96 Aligned_cols=158 Identities=21% Similarity=0.232 Sum_probs=107.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc---------cchh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA---------ITSA 79 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~ 79 (223)
...++|+++|.+|||||||+++|.+........+..+.......+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999887543333333334433333333 45789999999754321 0112
Q ss_pred hhcCCcEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625 80 YYRGAVGALLVYDIAKHL--TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL 157 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (223)
+...+|++++|+|.++.. ++.... .|+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~---------------------------------------------------~~~ 271 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQI---------------------------------------------------HLF 271 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHH---------------------------------------------------HHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHH---------------------------------------------------HHH
Confidence 334567777777766654 444444 334
Q ss_pred HHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 158 RELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..+..... ++|+++|+||+|+..... .++...++...+++++++||++|+|++++|++|.+.
T Consensus 272 ~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~ 333 (357)
T 2e87_A 272 EEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKT 333 (357)
T ss_dssp HHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHH
Confidence 44433322 689999999999865332 245566666788999999999999999999998764
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=6.3e-23 Score=161.95 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=111.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc----ccccchhhhc---CCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER----YRAITSAYYR---GAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~~~---~~~ 85 (223)
+|+|+|.+|||||||+++|++........+..+.......+.+++. ..+.+||+||..+ +..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6899999999999999999987654444444444444444555432 4789999999543 3334444544 488
Q ss_pred EEEEEEeCCC---cccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 86 GALLVYDIAK---HLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 86 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
++++|+|+++ ..+++.+..|.+++.....
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~------------------------------------------------ 270 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNL------------------------------------------------ 270 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS------------------------------------------------
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhh------------------------------------------------
Confidence 9999999887 6677777755555533211
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...++|+++|+||+|+... .++.+.+....+ .+++++||++++|+++++++|.+.
T Consensus 271 -~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 271 -RLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ 327 (342)
T ss_dssp -STTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred -hhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 0136899999999998642 245566666666 689999999999999999999764
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=1.2e-21 Score=160.39 Aligned_cols=149 Identities=23% Similarity=0.302 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc---------cccchhhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY---------RAITSAYY 81 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 81 (223)
.+|+++|.||||||||+|+|++..... ...+..+.+.....+..++. .+.+|||||.... ..+...++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 379999999999999999999887532 33344444444445555544 6799999997542 23344567
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625 82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161 (223)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (223)
+++|++++|+|..+..+..... + ..|+..
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~--i-----------------------------------------------~~~l~~-- 108 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDES--L-----------------------------------------------ADFLRK-- 108 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHH--H-----------------------------------------------HHHHHH--
T ss_pred HhCCEEEEEEECCCCCCHHHHH--H-----------------------------------------------HHHHHH--
Confidence 8888888888877654432211 1 122221
Q ss_pred hccCCCceEEEeecccchhhccCCChHHH-HHHHHHcCC-eEEEeecCCCCCHHHHHHHHHh
Q psy15625 162 DHADQNIVIMLVGNKSDLRHLRAVPADEA-KTFAERNNL-SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.++|+++|+||+|+.... ..+. .++. +.++ +++++||++|.|++++++++.+
T Consensus 109 ----~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 162 (439)
T 1mky_A 109 ----STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIK 162 (439)
T ss_dssp ----HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred ----cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 268999999999986421 1222 3333 4566 6899999999999999999875
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=7.2e-22 Score=162.36 Aligned_cols=150 Identities=24% Similarity=0.291 Sum_probs=107.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc-ccccc--------chhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE-RYRAI--------TSAY 80 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~~~--------~~~~ 80 (223)
.++|+++|.||||||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||.. ++... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999998643 33335445555555666654 468999999987 54421 2346
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++.+|++++|+|.+++.+.+... .+..+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~----------------------------------------------------il~~l 348 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK----------------------------------------------------ILERI 348 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH----------------------------------------------------HHHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH----------------------------------------------------HHHHh
Confidence 77788888888887766654322 11112
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+. ...++...+. ..+.+++++||+++.|++++|++|.+.
T Consensus 349 -----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 349 -----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp -----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred -----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 26799999999999652 3444554443 244689999999999999999999764
No 134
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=1.4e-21 Score=149.58 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=97.3
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-ccccc-ceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch------
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKST-IGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS------ 78 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~------ 78 (223)
.....++|+|+|.+|||||||+++|++..... ...++ .+.+........+ ...+.+|||||+..+.....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34457999999999999999999999887433 33333 3334433344343 34789999999776543222
Q ss_pred -----hhhcCCcEEEEEEeCCCcccH-HHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 79 -----AYYRGAVGALLVYDIAKHLTY-ENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 79 -----~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
.+++++|++++|+|.++.... ..+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~------------------------------------------------- 126 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA------------------------------------------------- 126 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHH-------------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHH-------------------------------------------------
Confidence 256788888888888752211 1111
Q ss_pred hHHHHHHhhhccCCCceEEEeec-ccchhhccCCCh-------HHHHHHHHHcCCe---E--EEeecCCCCCHHHHHHHH
Q psy15625 153 VERWLRELRDHADQNIVIMLVGN-KSDLRHLRAVPA-------DEAKTFAERNNLS---F--IETSALDSTNVETAFQNI 219 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~~~~i 219 (223)
.++....... ...|.++++| |+|+.+. .+.. ++++.+....+.. + +++||+++.|++++|++|
T Consensus 127 --~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i 202 (260)
T 2xtp_A 127 --QRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCI 202 (260)
T ss_dssp --HHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHH
Confidence 1111111111 1235555555 9999742 1111 2244455555532 2 789999999999999998
Q ss_pred Hhh
Q psy15625 220 LTA 222 (223)
Q Consensus 220 ~~~ 222 (223)
.+.
T Consensus 203 ~~~ 205 (260)
T 2xtp_A 203 EDL 205 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=146.65 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=98.6
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc--cceeeeEEEEEEEcCeEEEEEEEeCCCCcc-----------
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS--TIGVEFATRSIQVDQKTIKAQIWDTAGQER----------- 72 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------- 72 (223)
......++|+|+|.+|||||||+|+|++..+.....+ +.+..........++ ..+.+|||||...
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3445679999999999999999999999887655544 333444444444444 4789999999543
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
+......+++++|++++|+|.++.... ...++..+
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~------------------------------------------- 136 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKI------------------------------------------- 136 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHH-------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHH-------------------------------------------
Confidence 222223345567788888877654331 11122211
Q ss_pred hHHHHHHhhhccCCCceEEEeecccchhhccCCC------hHHHHHHHHHcCCeEEEeecCCC-----CCHHHHHHHHHh
Q psy15625 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP------ADEAKTFAERNNLSFIETSALDS-----TNVETAFQNILT 221 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~ 221 (223)
...+... ...|+++|+||+|+.+.+.+. .+.++.+..+.+..++.+++..+ .++.++|+.+.+
T Consensus 137 ----~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~ 210 (239)
T 3lxx_A 137 ----LKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQR 210 (239)
T ss_dssp ----HHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHH
Confidence 1111111 135899999999986543332 24677888888888888877643 688888887754
No 136
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=2.2e-21 Score=151.23 Aligned_cols=156 Identities=20% Similarity=0.206 Sum_probs=98.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCc-c--------ccccch
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQE-R--------YRAITS 78 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~--------~~~~~~ 78 (223)
....+|+++|++|||||||+|+|++..+..... +..+....... +......+.+|||||+. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999987653322 22212211222 22334578999999976 2 222233
Q ss_pred hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625 79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR 158 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (223)
.+++.+|++++|+|.++ -+ ....+ ...
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~--------------------------------------------------i~~ 110 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEM--------------------------------------------------VLN 110 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHH--------------------------------------------------HHH
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHH--------------------------------------------------HHH
Confidence 44566667777777654 21 11111 111
Q ss_pred HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+. ..+.|+++++||+|+.+.+....+....+....++ .++++||+++.|++++++.+.+.
T Consensus 111 ~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 111 KLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp HHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred HHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHh
Confidence 121 23689999999999864212223344555555665 69999999999999999998764
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=3.9e-20 Score=149.84 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=108.7
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEE-------EE---------EE---cCeEEEEEEEe
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-------SI---------QV---DQKTIKAQIWD 66 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~~~D 66 (223)
.+..+.++|+++|.+|+|||||+++|++.......... ..+.... .. .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 45567899999999999999999999985433211000 0000000 00 00 11236899999
Q ss_pred CCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeeccc
Q psy15625 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAK 146 (223)
Q Consensus 67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 146 (223)
|||+..+.......+..+|++++|+|..+..+......++..+
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~------------------------------------- 124 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL------------------------------------- 124 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHH-------------------------------------
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHH-------------------------------------
Confidence 9999999988888999999999999998876555554333222
Q ss_pred ccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 147 HLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERN---NLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
... ...|+++|+||+|+.+.... ..++..++.... +++++++||+++.|+++++++|.+
T Consensus 125 --------------~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~ 188 (403)
T 3sjy_A 125 --------------GII--GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE 188 (403)
T ss_dssp --------------HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred --------------HHc--CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence 211 12589999999998653211 112233333222 568999999999999999999976
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=8.3e-22 Score=161.18 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc--------cccccchhhhcC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE--------RYRAITSAYYRG 83 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~ 83 (223)
.+|+++|.+|||||||+|+|++...... ..+.+.+..............+.+|||||+. .+......+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998776432 2344555555555555555689999999975 233444455666
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 163 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (223)
+|++++|+|..+..+.... .+...+.
T Consensus 83 ad~il~vvD~~~~~~~~d~----------------------------------------------------~~~~~l~-- 108 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADE----------------------------------------------------EVAKILY-- 108 (436)
T ss_dssp CSEEEEEEETTTCSCHHHH----------------------------------------------------HHHHHHT--
T ss_pred CCEEEEEEeCCCCCCHHHH----------------------------------------------------HHHHHHH--
Confidence 6666666666554443221 1111122
Q ss_pred cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..++|+++|+||+|+.+.+.. ..++. +.++ +++++||++|.|++++++++.+.
T Consensus 109 -~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 109 -RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEH 162 (436)
T ss_dssp -TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred -HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence 247899999999998653211 11122 3455 68999999999999999998763
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=9.9e-21 Score=159.02 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=106.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcc--cc-----c----c--cccceeeeEEEEEEE-----cCeEEEEEEEeCCCCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEF--NL-----E----S--KSTIGVEFATRSIQV-----DQKTIKAQIWDTAGQE 71 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~----~--~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~ 71 (223)
...+|+++|+.++|||||+++|+.... .. . . ....+.++......+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 467999999999999999999986321 00 0 0 012233333222222 4456899999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE 151 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 151 (223)
++.......++.+|++++|+|.++..+.+....|..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~-------------------------------------------- 118 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT-------------------------------------------- 118 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH--------------------------------------------
Confidence 999888888999999999999988777666653322
Q ss_pred hhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe---EEEeecCCCCCHHHHHHHHHhh
Q psy15625 152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS---FIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|+++|+||+|+.+.+ ..+...++....+.. ++++||+++.|+++++++|.+.
T Consensus 119 -------~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~ 179 (599)
T 3cb4_D 119 -------AME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179 (599)
T ss_dssp -------HHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred -------HHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhc
Confidence 221 268999999999997522 233345566666664 9999999999999999998764
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=9.8e-22 Score=160.87 Aligned_cols=150 Identities=22% Similarity=0.254 Sum_probs=93.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh--------h
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA--------Y 80 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------~ 80 (223)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||..++...... +
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35799999999999999999999876542 2234444444444455554 46799999997654433222 4
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (223)
++.+|++++|+|.+++.+... . .++..+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~---------------------------------------------------~i~~~l 328 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-Q---------------------------------------------------EIYEQV 328 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-H---------------------------------------------------HHHHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-H---------------------------------------------------HHHHhc
Confidence 566777777777776554333 1 222333
Q ss_pred hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
. ..|+++|+||+|+.+..... ..+.+. .+.+++++||+++.|+++++++|.+.
T Consensus 329 ~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 329 K-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp T-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred c-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 2 36999999999997543322 111111 35679999999999999999998764
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=1.1e-20 Score=143.30 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=98.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchh
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSA 79 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~ 79 (223)
....++|+++|.+|||||||+|++++.........+.+.+..............+.+|||||.... ......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 345799999999999999999999998876554443223222222223333457899999996332 111122
Q ss_pred hh----cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 80 YY----RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 80 ~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
++ +++|++++|+|.++.... ...+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~------------------------------------------------ 127 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQ--DQQAVR------------------------------------------------ 127 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHH--HHHHHH------------------------------------------------
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHH--HHHHHH------------------------------------------------
Confidence 22 788888888888752211 111111
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccC------CChHHHHHHHHHcCCeEEEeecCC-----CCCHHHHHHHHHhh
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRA------VPADEAKTFAERNNLSFIETSALD-----STNVETAFQNILTA 222 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~ 222 (223)
++..+......+.|+++++||+|+.+... ...+.++.+....+..++.+++.. +.+++++++.|.++
T Consensus 128 ~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~ 205 (247)
T 3lxw_A 128 QVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGL 205 (247)
T ss_dssp HHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHH
Confidence 12222111112689999999999965210 111346777777888877777655 57999999988654
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=3.2e-21 Score=148.58 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=94.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY 80 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 80 (223)
...++|+++|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||..+...
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~----- 80 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----- 80 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSC-----
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccccc-----
Confidence 35799999999999999999998876654433 34444444444444455567999999999643321
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHH-----HHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhH
Q psy15625 81 YRGAVGALLVYDIAKHLTYENVERWL-----RELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVE 154 (223)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~ 154 (223)
+...+..+..++ ..+...... ........++|+++++++.+.. ....+ .
T Consensus 81 --------------~~~~~~~i~~~i~~~~~~~l~~~~~~----------~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~ 135 (274)
T 3t5d_A 81 --------------NSNCWQPVIDYIDSKFEDYLNAESRV----------NRRQMPDNRVQCCLYFIAPSGHGLKPLD-I 135 (274)
T ss_dssp --------------CTTTTHHHHHHHHHHHHHHHHHHHSS----------CCCSCCCCCCCEEEEEECSCCSSCCHHH-H
T ss_pred --------------chhhHHHHHHHHHHHHHHHHHhhccc----------ccccccCCceeEEEEEecCCCCCCCHHH-H
Confidence 111222222111 111110000 0001112357788888876653 33333 2
Q ss_pred HHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++..+.. ++|+++|+||+|+...... ..+.+.+.....+++++++|++++.|+++++++|.+.
T Consensus 136 ~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 136 EFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 34444433 7899999999998532211 1234455556678999999999999999999998764
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=2.2e-20 Score=156.73 Aligned_cols=157 Identities=23% Similarity=0.281 Sum_probs=108.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc--cccc---------c--cccceeeeEE--EEEEE---cCeEEEEEEEeCCCC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLE---------S--KSTIGVEFAT--RSIQV---DQKTIKAQIWDTAGQ 70 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------~--~~~~~~~~~~--~~~~~---~~~~~~~~~~D~~G~ 70 (223)
+...+|+++|..++|||||+++|+... +... . ....+.++.. ..+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999998632 1100 0 0011122211 11212 445688999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY 150 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 150 (223)
.++.......++.+|++++|+|.++..+.+....|..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~------------------------------------------- 120 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK------------------------------------------- 120 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH-------------------------------------------
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH-------------------------------------------
Confidence 9998888888999999999999998877766653322
Q ss_pred hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---eEEEeecCCCCCHHHHHHHHHhh
Q psy15625 151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---SFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
... .++|+++++||+|+.+.+ ..+...++....++ +++++||++|.|+++++++|++.
T Consensus 121 --------a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 121 --------AVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp --------HHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred --------HHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence 111 378999999999997522 22334555555666 38999999999999999998764
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=8.2e-23 Score=169.28 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=112.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
...+|+++|.+|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||+..+..++..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999999887766665655554443333332 22368999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.++....+....+ ......++|
T Consensus 82 VVDa~dg~~~qt~e~l-------------------------------------------------------~~~~~~~vP 106 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-------------------------------------------------------QHAKDAHVP 106 (537)
T ss_dssp ECBSSSCCCHHHHHHH-------------------------------------------------------HHHHTTTCC
T ss_pred EEECCCCccHHHHHHH-------------------------------------------------------HHHHHcCCc
Confidence 9999886655444311 111123689
Q ss_pred EEEeecccchhhccCC-ChHHHHHHH---HHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 170 IMLVGNKSDLRHLRAV-PADEAKTFA---ERN--NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~~~-~~~~~~~~~---~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+++++||+|+.+.... ...+...+. ..+ .++++++||++|.|++++|+.|...
T Consensus 107 iIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 107 IVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp EEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred EEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHh
Confidence 9999999999752221 112222211 111 2479999999999999999998764
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.2e-20 Score=154.45 Aligned_cols=157 Identities=24% Similarity=0.222 Sum_probs=94.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----------
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT---------- 77 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---------- 77 (223)
+..++|+++|++|||||||+|+|++..... ...+..+.+.....+.+++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 346899999999999999999999886532 22233333333445555654 57899999974332221
Q ss_pred --hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 78 --SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 78 --~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
..+++.++++++++|.++..+ ..+. .
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~---------------------------------------------------~~~~-~ 283 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGIT---------------------------------------------------RQDQ-R 283 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC---------------------------------------------------HHHH-H
T ss_pred HHHHHHhhCCEEEEEEeCCCCCC---------------------------------------------------HHHH-H
Confidence 123445555555555554333 2221 1
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccCCChHHHHHH-HH----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF-AE----RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
....+.. .++|+++|+||+|+.+.+....++.... .. ..+++++++||++|.|++++|+.+.+.
T Consensus 284 i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 284 MAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp HHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 1112221 3789999999999975433333333222 22 235789999999999999999998763
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=5.1e-21 Score=157.92 Aligned_cols=156 Identities=20% Similarity=0.156 Sum_probs=104.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc-------ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE-------FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR 82 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 82 (223)
+.++|+++|.+++|||||+++|++.. ......+.++.+.....+.++ ...+.+||+||+.++.......+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHHh
Confidence 57999999999999999999999876 222222333333333333343 358899999999888887888889
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|+|.++...-+..+ ++..+..
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e----------------------------------------------------~l~~~~~ 123 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGE----------------------------------------------------HMLILDH 123 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHH----------------------------------------------------HHHHHHH
T ss_pred hCCEEEEEEecCCCccHHHHH----------------------------------------------------HHHHHHH
Confidence 999999999988743222211 0111111
Q ss_pred ccCCCceEEEeecccchhhcc--CCChHHHHHHHHHc----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERN----NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++|+++|+||+|+.+.. ....+++..++... +.+++++||+++.|+++++++|.+.
T Consensus 124 ---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 124 ---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp ---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHh
Confidence 257889999999986421 11234455555554 5789999999999999999998763
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=3.2e-20 Score=147.85 Aligned_cols=157 Identities=21% Similarity=0.175 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc--cc------chhhhcCC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR--AI------TSAYYRGA 84 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~------~~~~~~~~ 84 (223)
.|+++|.+|||||||+|+|++..+.....+..+.++....+.+++ ..+.+|||+|..... .+ ....+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhC
Confidence 499999999999999999999876544445555556666777766 467999999963211 11 11235677
Q ss_pred cEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 85 VGALLVYDIAKHL--TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 85 ~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
|.+++|+|.+++. .......+ ...+..
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~---------------------------------------------------~~~L~~ 287 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSS---------------------------------------------------FEILRE 287 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHH---------------------------------------------------HHHHHH
T ss_pred CEEEEEEECCCCcchHHHHHHHH---------------------------------------------------HHHHHH
Confidence 8888888877765 33333322 222222
Q ss_pred ccCCCceEEEeecccchhhccCC-ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERN---NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
....+.|+++|+||+|+.+.... ..+....++... +.+++++||+++.|+++++++|.+.
T Consensus 288 l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 288 IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 22246899999999998642200 001222233443 3468999999999999999998764
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=3.2e-20 Score=150.54 Aligned_cols=161 Identities=21% Similarity=0.192 Sum_probs=98.4
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCc---ccccccc--cceeeeEEEEEEE-------------c--C----eEEEE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNE---FNLESKS--TIGVEFATRSIQV-------------D--Q----KTIKA 62 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 62 (223)
...+.++|+++|..++|||||+++|++.. +.....+ ++...+....+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998543 2222223 3222232222211 1 1 13689
Q ss_pred EEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEE
Q psy15625 63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLV 141 (223)
Q Consensus 63 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (223)
.+||+||+..+..........+|++++|+|.++.. ..+..+ .
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~------------------------------------ 126 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-H------------------------------------ 126 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-H------------------------------------
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-H------------------------------------
Confidence 99999999887766666677789999999988643 111111 0
Q ss_pred eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCCCCHHHHH
Q psy15625 142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDSTNVETAF 216 (223)
Q Consensus 142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~ 216 (223)
+..+... ...|+++++||+|+.+... ...++++.++.. .+++++++||+++.|+++++
T Consensus 127 ---------------l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~ 189 (408)
T 1s0u_A 127 ---------------LMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLL 189 (408)
T ss_dssp ---------------HHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHH
T ss_pred ---------------HHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHH
Confidence 0111111 1247999999999976433 223556666654 36789999999999999999
Q ss_pred HHHHh
Q psy15625 217 QNILT 221 (223)
Q Consensus 217 ~~i~~ 221 (223)
++|.+
T Consensus 190 ~~l~~ 194 (408)
T 1s0u_A 190 KAIQD 194 (408)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99976
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=6.1e-21 Score=158.57 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=67.8
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCc------------------cccccc--ccceeeeEEEEEEEcCeEEEEEEEeC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE------------------FNLESK--STIGVEFATRSIQVDQKTIKAQIWDT 67 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~ 67 (223)
.....+|+|+|.+|+|||||+++|+... +..... ...+.+.......+.+....+.+|||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 3457899999999999999999996211 100000 01122222233334445578999999
Q ss_pred CCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
||+.++......+++.+|++++|+|.++..+.....
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~ 125 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK 125 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 999999988888999999999999999877665554
No 150
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=2.4e-20 Score=147.69 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=90.4
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHHhcCCceeEEEeCCCccc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH----------LTYENVERWLRELRDHADQNIVIMLVGPPSLL 128 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (223)
.+.+.+||++|+..++.+|..++++++++++|+|+++. +++.....|++.+.+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~----------------- 254 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN----------------- 254 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT-----------------
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc-----------------
Confidence 57899999999999999999999999999999999994 456666644443322
Q ss_pred cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc---------------CCChHHHHHH
Q psy15625 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR---------------AVPADEAKTF 193 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~ 193 (223)
.....+.|+++++||+|+.+.+ ....+++..+
T Consensus 255 ---------------------------------~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~ 301 (353)
T 1cip_A 255 ---------------------------------NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY 301 (353)
T ss_dssp ---------------------------------CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHH
T ss_pred ---------------------------------CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHH
Confidence 1112468999999999996432 3567788877
Q ss_pred HH-----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 194 AE-----------RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 194 ~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+. ..++.+++|||+++.|++++|+++.+.
T Consensus 302 ~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 302 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 76 356779999999999999999998764
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=3.8e-20 Score=150.25 Aligned_cols=162 Identities=22% Similarity=0.205 Sum_probs=105.0
Q ss_pred cccceeEEEEEEcCCCCcHHHHHHHHhhCc---ccccccc--cceeeeEEEEEEE-------------c--C----eEEE
Q psy15625 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNE---FNLESKS--TIGVEFATRSIQV-------------D--Q----KTIK 61 (223)
Q Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 61 (223)
....+.++|+++|..++|||||+++|++.. +.....+ ++...+....+.. + + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 345678999999999999999999998543 2233333 3222332222211 0 1 1368
Q ss_pred EEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEE
Q psy15625 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALL 140 (223)
Q Consensus 62 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (223)
+.+||+||+.++.......+..+|++++|+|.++.. ..+..+ .
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~----------------------------------- 128 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-H----------------------------------- 128 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-H-----------------------------------
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-H-----------------------------------
Confidence 999999999887766666677789999999988643 111111 0
Q ss_pred EeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCCCCHHHH
Q psy15625 141 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDSTNVETA 215 (223)
Q Consensus 141 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~ 215 (223)
+..+... ...|+++++||+|+.+... ...++++.+... .+++++++||+++.|++++
T Consensus 129 ----------------l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L 190 (410)
T 1kk1_A 129 ----------------LMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVL 190 (410)
T ss_dssp ----------------HHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred ----------------HHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHH
Confidence 0111111 1357999999999865321 122344455443 3678999999999999999
Q ss_pred HHHHHh
Q psy15625 216 FQNILT 221 (223)
Q Consensus 216 ~~~i~~ 221 (223)
+++|.+
T Consensus 191 ~~~l~~ 196 (410)
T 1kk1_A 191 VKAIED 196 (410)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=1e-19 Score=148.64 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=103.6
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----------------------------ccccceeeeEEEEEEEcC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDQ 57 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 57 (223)
+....++|+++|.+|+|||||+++|+....... .....+++.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345679999999999999999999965321100 001123444444444555
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc---HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT---YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRG 134 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (223)
....+.+|||||+.+|.......++.+|++++|+|..+... +....++.+.+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l------------------------- 147 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA------------------------- 147 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHH-------------------------
Confidence 55689999999999998888888999999999999987532 11111111111
Q ss_pred cceeEEEeecccccchhhhHHHHHHhhhccCCCce-EEEeecccchhhcc------CCChHHHHHHHHHcC------CeE
Q psy15625 135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIV-IMLVGNKSDLRHLR------AVPADEAKTFAERNN------LSF 201 (223)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~------~~~ 201 (223)
..+.. .++| +++++||+|+.... ....+++..++...+ +++
T Consensus 148 -----------------------~~~~~---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~ 201 (439)
T 3j2k_7 148 -----------------------MLAKT---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHF 201 (439)
T ss_pred -----------------------HHHHH---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeE
Confidence 11111 2456 99999999985311 112234444554444 469
Q ss_pred EEeecCCCCCHHHHHH
Q psy15625 202 IETSALDSTNVETAFQ 217 (223)
Q Consensus 202 ~~~Sa~~~~~i~~~~~ 217 (223)
+++||++|.|++++++
T Consensus 202 i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 202 MPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeeccCCcccccccc
Confidence 9999999999998544
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=7.8e-21 Score=157.19 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=99.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----------------------------ccccceeeeEEEEEEEcCeE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDQKT 59 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (223)
.+.+||+++|.+|+|||||+++|++...... .....++++......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999999999976511100 00111334434444455566
Q ss_pred EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHH--HHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG 137 (223)
Q Consensus 60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
..+.+|||||+.++......+++.+|++++|+|.++......+ ..+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~------------------------------ 160 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK------------------------------ 160 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHH------------------------------
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHH------------------------------
Confidence 7899999999999998888999999999999999886543221 00000
Q ss_pred eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChH----HHHHHHHHc-----CCeEEEeecCC
Q psy15625 138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD----EAKTFAERN-----NLSFIETSALD 208 (223)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~ 208 (223)
..+...... ...|+++|+||+|+.+.+....+ ++..+.... +++++++||++
T Consensus 161 -----------------e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~ 221 (483)
T 3p26_A 161 -----------------EHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFS 221 (483)
T ss_dssp -----------------HHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSS
T ss_pred -----------------HHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeec
Confidence 001111111 12469999999999753222222 233333333 45799999999
Q ss_pred CCCHHH
Q psy15625 209 STNVET 214 (223)
Q Consensus 209 ~~~i~~ 214 (223)
|.|+++
T Consensus 222 g~gi~e 227 (483)
T 3p26_A 222 GEGVYK 227 (483)
T ss_dssp CTTSSS
T ss_pred CCCccc
Confidence 999975
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.2e-21 Score=154.75 Aligned_cols=173 Identities=19% Similarity=0.299 Sum_probs=80.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-cc--------ccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-------
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SK--------STIGVEFATRSIQVDQKTIKAQIWDTAGQER------- 72 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------- 72 (223)
...++|+|+|++|+|||||+++|.+...... +. ++.+.+.....+..++....+.+|||||+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999876543222 11 2333333333333455567899999999732
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHH-HHHHHHhcCCceeEEEeCCCccccccc--cccceeEEEeecccccc
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW-LRELRDHADQNIVIMLVGPPSLLRRYY--RGAVGALLVYDIAKHLT 149 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~ 149 (223)
+..+.. .+... ...++.... ..+... .+.+++++.++.. ..+
T Consensus 115 ~~~i~~----------------------~i~~~~~~yl~~~~~------------~~r~~~~d~rv~~~vy~I~~~-~~~ 159 (361)
T 2qag_A 115 FKTIIS----------------------YIDEQFERYLHDESG------------LNRRHIIDNRVHCCFYFISPF-GHG 159 (361)
T ss_dssp -CCTHH----------------------HHHHHHHHHHHHHTC------------SCCC-CCCCCCCEEEEEECSS-SSS
T ss_pred HHHHHH----------------------HHHHHHHHHHHHhhh------------hccccccCCceEEEEEEEecC-CCC
Confidence 222222 11100 011111000 000011 1234455554432 112
Q ss_pred hhhhH-HHHHHhhhccCCCceEEEeecccchhhccCCCh--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 150 YENVE-RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 150 ~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+..+. .++..+ ..++|+|+|+||+|+...+.+.. +++..++...+++++++||+++.+ ++.|..+.+
T Consensus 160 l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 160 LKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp CCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred cchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 22211 333333 24789999999999875443333 466666777889999999999988 666665543
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=3.9e-20 Score=149.52 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=108.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccc-------c-------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------E-------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
+.+||+++|.+++|||||+++|++..... . .....+.+.......+......+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998742110 0 001223344444444555556889999999988877
Q ss_pred cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER 155 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (223)
....+++.+|++++|+|.++....+....
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~--------------------------------------------------- 110 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH--------------------------------------------------- 110 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH---------------------------------------------------
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH---------------------------------------------------
Confidence 77778889999999999987654333221
Q ss_pred HHHHhhhccCCCce-EEEeecccchhhccC---CChHHHHHHHHHcC-----CeEEEeecCCCCC----------HHHHH
Q psy15625 156 WLRELRDHADQNIV-IMLVGNKSDLRHLRA---VPADEAKTFAERNN-----LSFIETSALDSTN----------VETAF 216 (223)
Q Consensus 156 ~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~~ 216 (223)
+..+.. .++| +++++||+|+.+... ...++.++++...+ ++++++||+++.| +.+++
T Consensus 111 -l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll 186 (397)
T 1d2e_A 111 -LLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLL 186 (397)
T ss_dssp -HHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHH
T ss_pred -HHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHH
Confidence 111111 2677 789999999864111 12245666666665 5899999999764 88999
Q ss_pred HHHHh
Q psy15625 217 QNILT 221 (223)
Q Consensus 217 ~~i~~ 221 (223)
+.|.+
T Consensus 187 ~~l~~ 191 (397)
T 1d2e_A 187 DAVDT 191 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=1.4e-19 Score=152.11 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=61.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccccc----ccceeeeEEEEE------------EEcCeEEEEEEEeCCCCccc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSI------------QVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~~D~~G~~~~ 73 (223)
...+|+++|++|+|||||+++|++..+..... .+++..+..... .+......+.+|||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999999876533221 122221111000 00011125899999999999
Q ss_pred cccchhhhcCCcEEEEEEeCCCcc
Q psy15625 74 RAITSAYYRGAVGALLVYDIAKHL 97 (223)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~ 97 (223)
..++..+++.+|++++|+|.++..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv 107 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGF 107 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCC
T ss_pred HHHHHHHHhhCCEEEEEEECCCCc
Confidence 999998899999999999999843
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=2.3e-20 Score=151.35 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=108.7
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhC--------ccccc-------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRN--------EFNLE-------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
..+.++|+++|.+|+|||||+++|++. .+... .....+.++......+......+.+|||||+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 446799999999999999999999873 11100 001223333334445555556889999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN 152 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (223)
|......+++.+|++++|+|.++....+. ..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~----------------------------------------------- 119 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REH----------------------------------------------- 119 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHH-----------------------------------------------
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHH-----------------------------------------------
Confidence 88777888899999999999887654322 211
Q ss_pred hHHHHHHhhhccCCCce-EEEeecccchhhccC---CChHHHHHHHHHcC-----CeEEEeecCCCCC------------
Q psy15625 153 VERWLRELRDHADQNIV-IMLVGNKSDLRHLRA---VPADEAKTFAERNN-----LSFIETSALDSTN------------ 211 (223)
Q Consensus 153 ~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~------------ 211 (223)
+..+.. .++| +++++||+|+.+... ...++.+.++...+ ++++++||+++.|
T Consensus 120 ----l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~ 192 (405)
T 2c78_A 120 ----ILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192 (405)
T ss_dssp ----HHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTS
T ss_pred ----HHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCC
Confidence 222222 2577 889999999864111 11234556666655 6799999999987
Q ss_pred ------HHHHHHHHHh
Q psy15625 212 ------VETAFQNILT 221 (223)
Q Consensus 212 ------i~~~~~~i~~ 221 (223)
+.++++.|.+
T Consensus 193 ~~~~~~i~~Ll~~l~~ 208 (405)
T 2c78_A 193 NEWVDKIWELLDAIDE 208 (405)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHh
Confidence 7888888765
No 158
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.2e-20 Score=155.22 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=89.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC--------ccccccchhhhc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ--------ERYRAITSAYYR 82 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~ 82 (223)
..+|+++|.+|||||||+|+|++..+.... .+.+.+..............+.+|||||. ..+......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 468999999999999999999998765332 34455665556666666678999999993 333444445555
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD 162 (223)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (223)
.+|++++|+|..+.. +..+. .+...+.
T Consensus 102 ~ad~il~VvD~~~~~---------------------------------------------------~~~d~-~l~~~l~- 128 (456)
T 4dcu_A 102 EADVIIFMVNGREGV---------------------------------------------------TAADE-EVAKILY- 128 (456)
T ss_dssp HCSEEEEEEESSSCS---------------------------------------------------CHHHH-HHHHHHT-
T ss_pred hCCEEEEEEeCCCCC---------------------------------------------------ChHHH-HHHHHHH-
Confidence 666666666654422 22221 1111222
Q ss_pred ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHh
Q psy15625 163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..++|+++|+||+|+.+.+. ...++. ..+. ..+++||+++.|+.++++.+.+
T Consensus 129 --~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 129 --RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp --TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred --HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHh
Confidence 24789999999999864221 111111 2233 4689999999999999999875
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.4e-20 Score=134.35 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=68.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccccc---ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC-
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG- 83 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~- 83 (223)
..+.++|+++|.+|||||||+++|.+..+... ..++.+ .......+.+||+||+..+...+..+++.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999999876431 111111 12244578999999999888888877776
Q ss_pred ---CcEEEEEEeCC-CcccHHHHHHHHHHH
Q psy15625 84 ---AVGALLVYDIA-KHLTYENVERWLREL 109 (223)
Q Consensus 84 ---~~~~i~v~d~~-~~~~~~~~~~~~~~~ 109 (223)
+|++++|+|.+ +..++..+..|+..+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 145 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 145 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHH
Confidence 89999999999 777888877666544
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=5.4e-20 Score=146.94 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (223)
+|+++|.+++|||||+++|+ ...++.+... ..+......+.+|||||+.+|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 1222222222 2344444579999999999887777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE-E
Q psy15625 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI-M 171 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-i 171 (223)
.... ......+ +..+.. .++|. +
T Consensus 93 -~~g~-~~qt~e~---------------------------------------------------~~~~~~---~~i~~~i 116 (370)
T 2elf_A 93 -PQGL-DAHTGEC---------------------------------------------------IIALDL---LGFKHGI 116 (370)
T ss_dssp -TTCC-CHHHHHH---------------------------------------------------HHHHHH---TTCCEEE
T ss_pred -CCCC-cHHHHHH---------------------------------------------------HHHHHH---cCCCeEE
Confidence 4432 2222222 112222 24566 8
Q ss_pred Eeec-ccchhhccCCC--hHHHHHHHHHc---CCeEEE--eecCC---CCCHHHHHHHHHhh
Q psy15625 172 LVGN-KSDLRHLRAVP--ADEAKTFAERN---NLSFIE--TSALD---STNVETAFQNILTA 222 (223)
Q Consensus 172 vv~n-K~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~i~~~~~~i~~~ 222 (223)
+++| |+|+ +.+... .++++++.... .+++++ +||++ +.|++++++.|.+.
T Consensus 117 vvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 117 IALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp EEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred EEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 8888 9998 422211 13455555444 368999 99999 99999999988753
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=1.4e-19 Score=147.93 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=102.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc------------ccc-------------------ceeeeEEEEEEE
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------KST-------------------IGVEFATRSIQV 55 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------~~~-------------------~~~~~~~~~~~~ 55 (223)
...+.++|+++|.+|+|||||+++|++....... ..+ .+++.......+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 3456799999999999999999999865411000 000 112222222334
Q ss_pred cCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccc
Q psy15625 56 DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGA 135 (223)
Q Consensus 56 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (223)
......+.+|||||+.+|......+++.+|++++|+|.++....+... +
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~------------------------------ 148 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR-H------------------------------ 148 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-H------------------------------
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-H------------------------------
Confidence 445568999999999998888888899999999999998765322221 1
Q ss_pred ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeec
Q psy15625 136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSA 206 (223)
Q Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa 206 (223)
+..+... .-.|+++|+||+|+.+... ...++.+.++...+ ++++++||
T Consensus 149 ---------------------l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA 205 (434)
T 1zun_B 149 ---------------------SYIASLL--GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSA 205 (434)
T ss_dssp ---------------------HHHHHHT--TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCT
T ss_pred ---------------------HHHHHHc--CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEec
Confidence 1111111 1236999999999975211 02244556666667 67999999
Q ss_pred CCCCCHHHH
Q psy15625 207 LDSTNVETA 215 (223)
Q Consensus 207 ~~~~~i~~~ 215 (223)
++|.|++++
T Consensus 206 ~~g~gi~~~ 214 (434)
T 1zun_B 206 LKGDNVVNK 214 (434)
T ss_dssp TTCTTTSSC
T ss_pred cCCCCcccc
Confidence 999999873
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=1.7e-21 Score=160.13 Aligned_cols=155 Identities=16% Similarity=0.216 Sum_probs=104.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 89 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (223)
...+|+++|++++|||||+++|.+..+.....+.++.+..... +......+.+|||||+..|..++...++.+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999999999987665444333333322222 22233468999999999999998888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 169 (223)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (223)
|+|.++....+.... +.... ..++|
T Consensus 81 VVda~~g~~~qT~e~----------------------------------------------------l~~~~---~~~vP 105 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA----------------------------------------------------IQHAK---AAQVP 105 (501)
T ss_dssp EEETTTBSCTTTHHH----------------------------------------------------HHHHH---HTTCC
T ss_pred EeecccCccHHHHHH----------------------------------------------------HHHHH---hcCce
Confidence 999877432211110 01111 13689
Q ss_pred EEEeecccchhhcc--CCChH--HHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 170 IMLVGNKSDLRHLR--AVPAD--EAKTFAERNN--LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 170 ~ivv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+++++||+|+.+.. .+..+ +...++..++ ++++++||++|.|++++|++|..
T Consensus 106 iIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 106 VVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred EEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 99999999996421 11110 0001112222 68999999999999999999865
No 163
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.81 E-value=4.7e-19 Score=140.31 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=85.2
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHHhcCCceeEEEeCCCcc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (223)
..+.+.+|||+|+..++.++..++++++++++|||++ +.+++..+..|++.+.+.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~--------------- 245 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--------------- 245 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---------------
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---------------
Confidence 5688999999999999999999999999999999998 667777777555544221
Q ss_pred ccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--C-------------------C
Q psy15625 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--V-------------------P 186 (223)
Q Consensus 128 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~-------------------~ 186 (223)
....+.|+++|+||+|+.+.+. . .
T Consensus 246 -----------------------------------~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~ 290 (354)
T 2xtz_A 246 -----------------------------------PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQE 290 (354)
T ss_dssp -----------------------------------GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHH
T ss_pred -----------------------------------cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcC
Confidence 1124789999999999965332 1 1
Q ss_pred hHHHHHHHHH----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 187 ADEAKTFAER----------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 187 ~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.++...++.+ ..+.+++|||+++.||+++|+++.+.
T Consensus 291 ~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~ 342 (354)
T 2xtz_A 291 IEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDET 342 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHH
Confidence 3455555332 12346899999999999999998764
No 164
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.81 E-value=2e-20 Score=152.86 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=104.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhC--cccccc---------------------------cccceeeeEEEEEEEcCe
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLES---------------------------KSTIGVEFATRSIQVDQK 58 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 58 (223)
..+.++|+++|.+|+|||||+++|+.. .+.... ....+.+.......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 346799999999999999999999864 221110 001123333333344555
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccccee
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGA 138 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (223)
...+.+|||||+.++......+++.+|++++|+|.++ .+++....|..+.++
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~--------------------------- 134 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTRE--------------------------- 134 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHH---------------------------
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHH---------------------------
Confidence 5689999999999998888889999999999999988 566655433222211
Q ss_pred EEEeecccccchhhhHHHHHHhhhccCCC-ceEEEeecccchhhcc------CCChHHHHHHHHHcC-----CeEEEeec
Q psy15625 139 LLVYDIAKHLTYENVERWLRELRDHADQN-IVIMLVGNKSDLRHLR------AVPADEAKTFAERNN-----LSFIETSA 206 (223)
Q Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa 206 (223)
.+..... .+ .|+++++||+|+.+.. ....++++.++...+ ++++++||
T Consensus 135 -----------------~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA 194 (435)
T 1jny_A 135 -----------------HIILAKT---MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVA 194 (435)
T ss_dssp -----------------HHHHHHH---TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBT
T ss_pred -----------------HHHHHHH---cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence 1111111 13 3689999999996521 112345666666665 67999999
Q ss_pred CCCCCHHHH
Q psy15625 207 LDSTNVETA 215 (223)
Q Consensus 207 ~~~~~i~~~ 215 (223)
++|.|+.++
T Consensus 195 ~~g~~v~e~ 203 (435)
T 1jny_A 195 PSGDNITHK 203 (435)
T ss_dssp TTTBTTTBC
T ss_pred ccCcccccc
Confidence 999999743
No 165
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.80 E-value=2.6e-19 Score=139.85 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=87.7
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHHhcCCceeEEEeCCCcc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (223)
..+.+.+||++|+..++.++..++++++++++|+|++ +.+++.....|++.+.
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~----------------- 227 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII----------------- 227 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH-----------------
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh-----------------
Confidence 4578999999999999999999999999999999776 4444555544433331
Q ss_pred ccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc----------------CCChHHHH
Q psy15625 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR----------------AVPADEAK 191 (223)
Q Consensus 128 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~ 191 (223)
......+.|+++++||+|+.+.+ ..+.+++.
T Consensus 228 ---------------------------------~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~ 274 (327)
T 3ohm_A 228 ---------------------------------TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR 274 (327)
T ss_dssp ---------------------------------TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHH
T ss_pred ---------------------------------hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHH
Confidence 11122478999999999997644 35667777
Q ss_pred HHHH----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 192 TFAE----------RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 192 ~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+.. ..++.++++||+++.||+.+|+.+.+.
T Consensus 275 ~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 275 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp HHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 7742 345678999999999999999998764
No 166
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.80 E-value=1.2e-18 Score=138.41 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=82.4
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHHhcCCceeEEEeCCCccc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (223)
.+.+.+||++|+..++..+..++++++++++|+|+++ .+++.....|++.+.+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~----------------- 262 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN----------------- 262 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT-----------------
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc-----------------
Confidence 4789999999999999999999999999999999999 5677777655544422
Q ss_pred cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc----------------CCChHHHHH
Q psy15625 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR----------------AVPADEAKT 192 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~ 192 (223)
.....+.|+++++||+|+.+.+ ..+.+++..
T Consensus 263 ---------------------------------~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~ 309 (362)
T 1zcb_A 263 ---------------------------------NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK 309 (362)
T ss_dssp ---------------------------------CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred ---------------------------------chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence 1112478999999999997533 256677776
Q ss_pred HHH-----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 193 FAE-----------RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 193 ~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
++. ..++.+++|||+++.|++++|+++.+.
T Consensus 310 ~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 310 FLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp HHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 651 345778999999999999999998764
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=7.3e-20 Score=142.66 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=37.9
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHH--cC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAER--NN-LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
.+.|+++|+||+|+.+......+..+..... .+ .+++++||+++.|++++|+.+.+
T Consensus 191 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 191 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 4689999999999975433222222210001 12 36889999999999999998764
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.1e-20 Score=155.15 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=99.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-----------------------------ccceeeeEEEEEEEcCeE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-----------------------------STIGVEFATRSIQVDQKT 59 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
.+.++|+++|.+|+|||||+++|++........ ...|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998663221110 012233333333344455
Q ss_pred EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV 136 (223)
Q Consensus 60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (223)
..+.+|||||+..+......+++.+|++++|+|.++.. .+....++.+.+
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l--------------------------- 297 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM--------------------------- 297 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH---------------------------
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH---------------------------
Confidence 68899999999998888888899999999999987632 110011111111
Q ss_pred eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCC----hHHHHHHHHHcC-----CeEEEeecC
Q psy15625 137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP----ADEAKTFAERNN-----LSFIETSAL 207 (223)
Q Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~ 207 (223)
...... ...|+++|+||+|+.+.+... .+++..+....+ ++++++||+
T Consensus 298 ---------------------~~~~~l--gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~ 354 (611)
T 3izq_1 298 ---------------------LLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGF 354 (611)
T ss_dssp ---------------------HHHHTT--TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTT
T ss_pred ---------------------HHHHHc--CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecc
Confidence 111111 124699999999987522111 223344444443 589999999
Q ss_pred CCCCHHHH
Q psy15625 208 DSTNVETA 215 (223)
Q Consensus 208 ~~~~i~~~ 215 (223)
+|.|+.++
T Consensus 355 tG~gI~el 362 (611)
T 3izq_1 355 SGEGVYKI 362 (611)
T ss_dssp TCTTTSSC
T ss_pred cCCCcccc
Confidence 99999854
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=5e-19 Score=130.93 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=89.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----------cccc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----------RAIT 77 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~ 77 (223)
.....+|+++|++|||||||++++.+..+.....++.+.+.....+.+++ .+.+||+||.... ....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44568999999999999999999998764333344555444333333333 4689999996431 1111
Q ss_pred hhhh---cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625 78 SAYY---RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154 (223)
Q Consensus 78 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (223)
..++ ..++++++++|.....+.... .+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-------------------------------------------------~~~ 130 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-------------------------------------------------QMI 130 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-------------------------------------------------HHH
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH-------------------------------------------------HHH
Confidence 1122 234455555555443322110 011
Q ss_pred HHHHHhhhccCCCceEEEeecccchhhcc--CCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 155 RWLRELRDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|+. ..++|++++.||+|+.+.. ....+.++.++.+.+ +.++++||+++.|+++++++|.+.
T Consensus 131 ~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 131 EWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 2221 1368999999999985421 111234555555554 568999999999999999998764
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=5.2e-20 Score=155.15 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=46.5
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-----------------------------cccceeeeEEEEEEEcC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------------------KSTIGVEFATRSIQVDQ 57 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 57 (223)
...+.++|+++|.+|+|||||+++|+........ ....+++.......+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 3456789999999999999999999653211000 00123333333344444
Q ss_pred eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625 58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH 96 (223)
Q Consensus 58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (223)
....+.+|||||+.+|.......++.+|++++|+|.++.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 556889999999999888877778888888888887653
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=3.7e-20 Score=152.40 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=89.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCc--cccc----------------------cc-----ccceeeeEEEEEEEcCe
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLE----------------------SK-----STIGVEFATRSIQVDQK 58 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~ 58 (223)
..+.++|+++|..++|||||+++|+... +... .+ ...+.+.......+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 3567899999999999999999997521 1100 00 01122222222223333
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGA 135 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (223)
...+.+|||||+.+|.......++.+|++++|+|.++.. +++...++.+.+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-------------------------- 173 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-------------------------- 173 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH--------------------------
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH--------------------------
Confidence 468899999999999888888889999999999998752 222122222211
Q ss_pred ceeEEEeecccccchhhhHHHHHHhhhccCCCce-EEEeecccchhhcc------CCChHHHHHHHHHc-------CCeE
Q psy15625 136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIV-IMLVGNKSDLRHLR------AVPADEAKTFAERN-------NLSF 201 (223)
Q Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~-------~~~~ 201 (223)
......++| +++++||+|+.+.. ....++...++... ++++
T Consensus 174 -------------------------~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~ 228 (467)
T 1r5b_A 174 -------------------------VLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKY 228 (467)
T ss_dssp -------------------------HHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEE
T ss_pred -------------------------HHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceE
Confidence 111113566 99999999985411 01123456666655 3569
Q ss_pred EEeecCCCCCHHHHH
Q psy15625 202 IETSALDSTNVETAF 216 (223)
Q Consensus 202 ~~~Sa~~~~~i~~~~ 216 (223)
+++||++|.|+.+++
T Consensus 229 i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 229 MPVSAYTGQNVKDRV 243 (467)
T ss_dssp EECBTTTTBTTSSCC
T ss_pred Eeccccccccccccc
Confidence 999999999998654
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.78 E-value=4.7e-19 Score=155.87 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=106.6
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccc-------c-------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN-------L-------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 73 (223)
..+.++|+++|.+++|||||+++|++.... . ......++++......++.....+.+|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 445799999999999999999999874210 0 01122333433334445555668999999999988
Q ss_pred cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625 74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV 153 (223)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 153 (223)
.......++.+|++++|+|.++....+... +
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrE-h------------------------------------------------ 403 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTRE-H------------------------------------------------ 403 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHH-H------------------------------------------------
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHH-H------------------------------------------------
Confidence 877777888999999999988754332221 1
Q ss_pred HHHHHHhhhccCCCce-EEEeecccchhhccC---CChHHHHHHHHHcC-----CeEEEeecCCC--------CCHHHHH
Q psy15625 154 ERWLRELRDHADQNIV-IMLVGNKSDLRHLRA---VPADEAKTFAERNN-----LSFIETSALDS--------TNVETAF 216 (223)
Q Consensus 154 ~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~~ 216 (223)
+..+.. .++| +++++||+|+.+.+. ...++.+.++...+ ++++++||+++ .|+.+++
T Consensus 404 ---L~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLl 477 (1289)
T 3avx_A 404 ---ILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELA 477 (1289)
T ss_dssp ---HHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHH
T ss_pred ---HHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhH
Confidence 111221 1567 789999999964211 12245666666665 57999999999 4689999
Q ss_pred HHHHh
Q psy15625 217 QNILT 221 (223)
Q Consensus 217 ~~i~~ 221 (223)
+.|.+
T Consensus 478 eaL~~ 482 (1289)
T 3avx_A 478 GFLDS 482 (1289)
T ss_dssp HHHHH
T ss_pred hHHhh
Confidence 98875
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=4.2e-18 Score=145.52 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=65.2
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc----------------cceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----------------TIGVEFATRSIQVDQKTIKAQIWDTAGQ 70 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 70 (223)
..+...+|+++|+.|+|||||+++|++......... ..+.++......+....+.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 345678999999999999999999985432110000 1122222233334444678999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625 71 ERYRAITSAYYRGAVGALLVYDIAKHLTY 99 (223)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 99 (223)
.++......+++.+|++++|+|.++....
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~ 113 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQV 113 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccch
Confidence 99888888889999999999998765543
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=1.7e-19 Score=148.06 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=99.3
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc--cccc----------------------cc-----ccceeeeEEEEEEEcCeE
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLE----------------------SK-----STIGVEFATRSIQVDQKT 59 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~ 59 (223)
.+.++|+++|.+|+|||||+++|++.. +... .+ ...+.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 467999999999999999999998641 1110 00 011222222223344455
Q ss_pred EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc---HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT---YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV 136 (223)
Q Consensus 60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (223)
..+.+|||||+.+|......+++.+|++++|+|.++... ++...+..+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~---------------------------- 136 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREH---------------------------- 136 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHH----------------------------
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHH----------------------------
Confidence 689999999999988888888999999999999876431 1100011111
Q ss_pred eeEEEeecccccchhhhHHHHHHhhhccCCCc-eEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeec
Q psy15625 137 GALLVYDIAKHLTYENVERWLRELRDHADQNI-VIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSA 206 (223)
Q Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa 206 (223)
+..... .++ ++++++||+|+.+... ...++++.++...+ ++++++||
T Consensus 137 --------------------~~~~~~---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA 193 (458)
T 1f60_A 137 --------------------ALLAFT---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISG 193 (458)
T ss_dssp --------------------HHHHHH---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCT
T ss_pred --------------------HHHHHH---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeec
Confidence 111111 245 4999999999973110 12234555656555 67999999
Q ss_pred CCCCCHHH
Q psy15625 207 LDSTNVET 214 (223)
Q Consensus 207 ~~~~~i~~ 214 (223)
++|.|+.+
T Consensus 194 ~~g~nv~~ 201 (458)
T 1f60_A 194 WNGDNMIE 201 (458)
T ss_dssp TTCBTTTB
T ss_pred ccCcCccc
Confidence 99999864
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=3.7e-18 Score=137.71 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=105.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----cccchhh---hcCCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----RAITSAY---YRGAV 85 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~~~---~~~~~ 85 (223)
.|+|+|++|||||||++++++........+..+.......+..++ ...+.+||+||..+. ..+...+ .+.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 489999999999999999998754333333333344444444443 246899999997432 2232222 45688
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
.++.++|++ ...+..+..+.+++..+.. .+
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~--------------------------------------------aL----- 267 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDP--------------------------------------------AL----- 267 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCH--------------------------------------------HH-----
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhH--------------------------------------------Hh-----
Confidence 999999987 5556666655554422110 01
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
...|.++++||+|+... ...+++.......+.+++.+||++++|+++++++|.+.
T Consensus 268 ~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 268 LRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp HHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 14688999999998652 12334445555567899999999999999999998764
No 176
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=5.8e-19 Score=142.06 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=56.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEE--EE-------------------EcC-eEEEEEEEeCCC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS--IQ-------------------VDQ-KTIKAQIWDTAG 69 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~~~D~~G 69 (223)
++|+++|.||||||||+|+|++........+..+.+..... +. +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999988743233332222222221 11 122 256899999999
Q ss_pred Ccc----ccccch---hhhcCCcEEEEEEeCCCc-----------ccHHHHHHHHHHHH
Q psy15625 70 QER----YRAITS---AYYRGAVGALLVYDIAKH-----------LTYENVERWLRELR 110 (223)
Q Consensus 70 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~-----------~~~~~~~~~~~~~~ 110 (223)
... ...+.. .+++.+|++++|+|.++. +....+..+..++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~ 139 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREID 139 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHH
Confidence 753 222222 357899999999999886 55666665555554
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=1.4e-17 Score=127.39 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=58.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc------
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR------ 82 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------ 82 (223)
..++|+++|.+|+|||||+++|++........ +..+.......+.. ....+.+|||||+.++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 57999999999999999999999987533222 22223333333333 3448899999999887665554443
Q ss_pred ---CCcEEEEEEeCCCcc
Q psy15625 83 ---GAVGALLVYDIAKHL 97 (223)
Q Consensus 83 ---~~~~~i~v~d~~~~~ 97 (223)
++|++++|+++....
T Consensus 113 ~~~~~~~il~V~~~d~~~ 130 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA 130 (262)
T ss_dssp TTCEECEEEEEEESSCSC
T ss_pred hcCCCCEEEEEEcCCCCC
Confidence 566777776665433
No 178
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.76 E-value=2.7e-18 Score=134.66 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred EcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHHhcCCceeEEEeCC
Q psy15625 55 VDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLRELRDHADQNIVIMLVGP 124 (223)
Q Consensus 55 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (223)
+....+.+.+||++|+..++.++..++++++++++|+|++ +.+++.....|++.+.+
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~------------- 222 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT------------- 222 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH-------------
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh-------------
Confidence 3334578999999999999999999999999999999998 55666666655444322
Q ss_pred CccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc---------------CCChHH
Q psy15625 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR---------------AVPADE 189 (223)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~ 189 (223)
.....+.|+++++||+|+.+.+ ....++
T Consensus 223 -------------------------------------~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~ 265 (340)
T 4fid_A 223 -------------------------------------NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVM 265 (340)
T ss_dssp -------------------------------------CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHH
T ss_pred -------------------------------------hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHH
Confidence 1122478999999999986421 123445
Q ss_pred HHHHHHH---------------------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 190 AKTFAER---------------------------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 190 ~~~~~~~---------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+..+... .++.++++||++..|++.+|+.+.+.
T Consensus 266 a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~ 325 (340)
T 4fid_A 266 GAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDV 325 (340)
T ss_dssp HHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHH
Confidence 5444332 23568899999999999999988764
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=1.3e-17 Score=142.93 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=67.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCccc--------ccc---c-----ccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------LES---K-----STIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.+...+|+|+|.+|+|||||+++|+..... ... + ...+.+.......+......+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 356799999999999999999999842110 000 0 011122222222233345689999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 105 (223)
++......+++.+|++++|+|.++..+......|
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~ 122 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH
Confidence 9888888899999999999999988776665533
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=8.7e-18 Score=139.82 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCCCcc--ccceeEEEEEEcCCCCcHHHHHHHHhhCccccc---------------c-----cccceeeeEEEEEEEcCe
Q psy15625 1 MGTRED--EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------S-----KSTIGVEFATRSIQVDQK 58 (223)
Q Consensus 1 ~~~~~~--~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~ 58 (223)
|.|..- +.....+|+++|.+|+|||||+++|+....... . ....+.+.......+.+.
T Consensus 1 m~m~~l~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~ 80 (529)
T 2h5e_A 1 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH 80 (529)
T ss_dssp --CCTHHHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET
T ss_pred CchhhhhhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC
Confidence 444442 334579999999999999999999986421110 0 011122222222334445
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 98 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 98 (223)
...+.+|||||+.++......+++.+|++++|+|.++...
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 5789999999999988888888999999999999987644
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.74 E-value=3.5e-17 Score=140.41 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=26.9
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE 39 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~ 39 (223)
...++|+|+|.+|+|||||+|+|++..+.+.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v 97 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPS 97 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4578999999999999999999999876443
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=1.6e-17 Score=127.69 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=55.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh--------
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY-------- 80 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-------- 80 (223)
...++|+++|.+|+|||||+|+|++..+..... ..+.+.......+......+.+|||||+.++......+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 357999999999999999999999887643221 12222222233344445689999999987665433211
Q ss_pred -hcCCcEEEEEEeCCC
Q psy15625 81 -YRGAVGALLVYDIAK 95 (223)
Q Consensus 81 -~~~~~~~i~v~d~~~ 95 (223)
.+.+|++++|+|...
T Consensus 116 ~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDA 131 (270)
T ss_dssp TTCEECEEEEEEESSC
T ss_pred hcCCCCEEEEEEeCCC
Confidence 235666666666644
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.73 E-value=2.6e-18 Score=137.31 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=41.2
Q ss_pred HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q psy15625 159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQ 217 (223)
Q Consensus 159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 217 (223)
.+......+.|+++|+||+|+.+......+....+....+.+++.+|++++.++++.++
T Consensus 195 l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 195 ISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp HHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred HHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCC
Confidence 33444445789999999999976554444444444445677899999999988876543
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=2e-18 Score=134.44 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=83.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhC-ccccccc--------ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRN-EFNLESK--------STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS 78 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 78 (223)
.+..++|+|+|++|||||||+++|.+. .++.... ++.+........+..+....+.+||++|........
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~- 93 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR- 93 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH-
Confidence 345689999999999999999998875 3333221 111111111122223445689999999964221000
Q ss_pred hhhcCCcEEEEEEeCCCcccHHHHH----HHHHHHHHhcCCceeEEEeCCCcccc--ccccccceeEEEeecccc-cchh
Q psy15625 79 AYYRGAVGALLVYDIAKHLTYENVE----RWLRELRDHADQNIVIMLVGPPSLLR--RYYRGAVGALLVYDIAKH-LTYE 151 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~ 151 (223)
+... .-...+. .++..+. +..+ ....+++++++..+++.+ ....
T Consensus 94 -------------e~~~-~l~~~l~~~~~~~~~~~s---------------gg~rqrv~~ara~~ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 94 -------------DCFK-TIISYIDEQFERYLHDES---------------GLNRRHIIDNRVHCCFYFISPFGHGLKPL 144 (301)
T ss_dssp ---------------CT-THHHHHHHHHHHHHHHHT---------------SSCCTTCCCCCCCEEEEEECSSSSSCCHH
T ss_pred -------------HHHH-HHHHHHHHHHHHHHHHhC---------------HHhhhhhhhhhhhheeeeecCcccCCCHH
Confidence 0000 0011111 1122211 1111 112234456666665443 3333
Q ss_pred hhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+. ..+.... .+.|+++|+||+|+...++. ..+++++++..++++++++||+++ +++++|..+.+
T Consensus 145 ~~----~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 145 DV----AFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp HH----HHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHH
T ss_pred HH----HHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHH
Confidence 31 2222222 36799999999998653322 345778888889999999999999 99999988765
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=2.3e-17 Score=129.43 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=25.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
....+|+|+|.+|||||||+|+|++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4567999999999999999999999876
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=2.7e-16 Score=124.33 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=101.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCcccc--
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERYR-- 74 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~-- 74 (223)
++|+++|.||||||||+|+|++..+.....+..+.+.....+.+++. ...+.+||+||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999998754444343334433334444442 1478999999987643
Q ss_pred --cc---chhhhcCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHHh----cCCceeEEE--e-CCCc------
Q psy15625 75 --AI---TSAYYRGAVGALLVYDIAKH----------LTYENVERWLRELRDH----ADQNIVIML--V-GPPS------ 126 (223)
Q Consensus 75 --~~---~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~--~-~~~~------ 126 (223)
.+ ...+++.+|++++|+|+++. +.+..+..+..++.-. ......... . +...
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23358999999999999873 3455555444444210 000000000 0 0000
Q ss_pred -cccc---cccccceeEEEeeccc-ccchhhhHHHHHHhhhcc-CCCceEEEeecccchhhccCCChHHHHHHHHHcCCe
Q psy15625 127 -LLRR---YYRGAVGALLVYDIAK-HLTYENVERWLRELRDHA-DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS 200 (223)
Q Consensus 127 -~~~~---~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 200 (223)
...+ .+..... ++. .++.+. ...+.... ...+|+++++|+.|..-......+.++.++...+.+
T Consensus 163 ~~l~~~~~~L~~~~~------~~~~~~~~~e----~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~ 232 (363)
T 1jal_A 163 SVMEKILPVLENAGM------IRSVGLDKEE----LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV 232 (363)
T ss_dssp HHHHHHHHHHHTTCC------GGGSCCCHHH----HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcCCC------ccccCCCHHH----HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCC
Confidence 0000 0000000 000 111111 11222222 235899999999996421123456777888888999
Q ss_pred EEEeecCC
Q psy15625 201 FIETSALD 208 (223)
Q Consensus 201 ~~~~Sa~~ 208 (223)
++++||+.
T Consensus 233 ~i~~sA~~ 240 (363)
T 1jal_A 233 VVPVCAAI 240 (363)
T ss_dssp EEEECHHH
T ss_pred EEEechHH
Confidence 99999765
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=133.85 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=84.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA 79 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 79 (223)
.+..++|+|+|++|||||||++.|.+..+.... .++.+.......++..+....+.+||++|.......
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~--- 104 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN--- 104 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---
Confidence 345689999999999999999999987763221 111111111111122334457899999996543110
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHH-HHHHHhcCCceeEEEeCCCcccccccc--ccceeEEEeecc-cccchhhhHH
Q psy15625 80 YYRGAVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGPPSLLRRYYR--GAVGALLVYDIA-KHLTYENVER 155 (223)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~-~~~~~~~~~~ 155 (223)
...+..+..++ ..+...-..... ..+.+.. +++++++..+++ ++.+..+ ..
T Consensus 105 ----------------~~~~~~i~~~i~~~~~~~l~qr~~--------IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~ 159 (418)
T 2qag_C 105 ----------------SNCWQPVIDYIDSKFEDYLNAESR--------VNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IE 159 (418)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTTSCC---------CCCCCCCC-CCEEEEECCC-CCSCCHHH-HH
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHHHHH--------HHHHhccCCCeeEEEEEecCcccCCCHHH-HH
Confidence 00111111111 111111111111 1112223 344566666654 3444333 24
Q ss_pred HHHHhhhccCCCceEEEeecccchhhccCCCh--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 156 WLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
|+..+. .++|+|+|+||+|+...+.+.. ++++..+..++++++++|++++.++.++|..+.+
T Consensus 160 ~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 160 FMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 555553 2789999999999865333333 5677777788999999999999999998877654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=7e-16 Score=132.50 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=66.1
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCc--ccc------c---cc-----ccceeeeEEEEEEEc-------CeEEEEEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE--FNL------E---SK-----STIGVEFATRSIQVD-------QKTIKAQI 64 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~------~---~~-----~~~~~~~~~~~~~~~-------~~~~~~~~ 64 (223)
.+...+|+|+|..|+|||||+++|+... +.. . .+ ...+.+.......+. +..+.+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3457899999999999999999997531 110 0 00 011222222222222 23378999
Q ss_pred EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
|||||+.+|......+++.+|++++|+|.++........
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~ 125 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 125 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH
Confidence 999999998888888999999999999998876554443
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=2.5e-16 Score=135.11 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=66.5
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhC--cccc---cccc-----------cceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFNL---ESKS-----------TIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
.+...+|+++|.+|+|||||+++|+.. .+.. .... ..+.+.......+......+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 355789999999999999999999852 1110 0000 01111111122233335689999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105 (223)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 105 (223)
++......+++.+|++++|+|.++..+......|
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~ 120 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW 120 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH
Confidence 9888888889999999999999887776665533
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=1.5e-16 Score=118.50 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=44.5
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.|+++|+||+|+.+......++....+... +++++++||+++.|++++|++|.+.
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 4788999999999764444566666666554 4789999999999999999998763
No 191
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.67 E-value=3.8e-17 Score=127.27 Aligned_cols=133 Identities=16% Similarity=0.157 Sum_probs=104.0
Q ss_pred HHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHH
Q psy15625 26 NLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVE 103 (223)
Q Consensus 26 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~ 103 (223)
+|+.++..+.+. ..+.++++..+ ... +.... .+.+||+ ++.+..++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 77889988444 333 22222 6899999 8889999999999999999999999987 677777
Q ss_pred HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc
Q psy15625 104 RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183 (223)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 183 (223)
.|+..+ .. .++|+++|+||+|+.+.+
T Consensus 106 ~~l~~~---------------------------------------------------~~---~~~piilv~NK~DL~~~~ 131 (301)
T 1u0l_A 106 KFLVLA---------------------------------------------------EK---NELETVMVINKMDLYDED 131 (301)
T ss_dssp HHHHHH---------------------------------------------------HH---TTCEEEEEECCGGGCCHH
T ss_pred HHHHHH---------------------------------------------------HH---CCCCEEEEEeHHHcCCch
Confidence 555433 22 368999999999996533
Q ss_pred CCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHH
Q psy15625 184 AVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
.+ ++.+.++...+ .+++++||+++.|++++|+.+.
T Consensus 132 ~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 132 DL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred hH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 22 45667777777 8999999999999999998764
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-15 Score=121.19 Aligned_cols=193 Identities=19% Similarity=0.162 Sum_probs=118.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-------cchhhhcC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-------ITSAYYRG 83 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~ 83 (223)
..+|+++|.||||||||+|+|++........+..+.+.....+.+++. .+.++|+||..+... .....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 468999999999999999999998877777787777887777777664 679999999643221 12235788
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHHhc------CCceeEEEeCCCcc-------------------cccccccccee
Q psy15625 84 AVGALLVYDIAKHLTYENVERWLRELRDHA------DQNIVIMLVGPPSL-------------------LRRYYRGAVGA 138 (223)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 138 (223)
+|++++|+|.+++.. .......++.... +..+.+.-.+..+. ...+.-....+
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 999999999998643 2222233333321 11111111111100 00112233444
Q ss_pred EEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q psy15625 139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQN 218 (223)
Q Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 218 (223)
+++.+++.. .....+........|.+++.||+|.. ..++...+.. ...++++|+..+.|++++...
T Consensus 228 ~~~~nv~ed-------dl~d~~~~~~~~~~p~i~v~nKid~~-----~~eele~l~~--~~~~~~is~~~e~gLd~Li~~ 293 (376)
T 4a9a_A 228 AFRCDATVD-------DLIDVLEASSRRYMPAIYVLNKIDSL-----SIEELELLYR--IPNAVPISSGQDWNLDELLQV 293 (376)
T ss_dssp EECSCCCHH-------HHHHHHTTTTCEEECEEEEEECGGGS-----CHHHHHHHTT--STTEEECCTTTCTTHHHHHHH
T ss_pred eecccCCHH-------HHHHHHHHHHhhccceEEEEeccccc-----CHHHHHHHhc--ccchhhhhhhhcccchhHHHH
Confidence 444443322 12222333333468999999999964 3344444322 224789999999999998887
Q ss_pred HHh
Q psy15625 219 ILT 221 (223)
Q Consensus 219 i~~ 221 (223)
+.+
T Consensus 294 ~y~ 296 (376)
T 4a9a_A 294 MWD 296 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 193
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.65 E-value=6.1e-18 Score=134.51 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-------------------eEEEEEEEeCCCCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-------------------KTIKAQIWDTAGQER 72 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~G~~~ 72 (223)
++|+++|.||||||||+|+|++........+..+.........+.. ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998753222223222222222222321 235789999999765
Q ss_pred cc----ccc---hhhhcCCcEEEEEEeCCC
Q psy15625 73 YR----AIT---SAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 73 ~~----~~~---~~~~~~~~~~i~v~d~~~ 95 (223)
.. .+. ...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 43 222 235799999999999986
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.65 E-value=2.3e-17 Score=131.37 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=37.3
Q ss_pred CCCceEEEeecccchhhccCCChHHHHH--HHHHcC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625 165 DQNIVIMLVGNKSDLRHLRAVPADEAKT--FAERNN-LSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
..+.|+++|+||+|+.+......+..+. +....+ .+++++||+++.|++++++.+.+
T Consensus 195 ~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 195 PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3478999999999997533211111110 000123 25788999999999999988764
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=1.4e-16 Score=126.81 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=38.1
Q ss_pred CceEEEeecccchhhccCCC--hHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVP--ADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.|+++|+||+|+.+..... .++....... ++.+++++||+++.|+++++++|.+.
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999986422111 1122222111 15689999999999999999998753
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=3.9e-15 Score=111.23 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=46.0
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
+.|.++|+||+|+.+.+....++...++... +++++++||+++.|++++|++|.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 4688999999999865545667777777654 5789999999999999999998753
No 197
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.61 E-value=4.8e-15 Score=118.74 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=86.5
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHHhcCCceeEEEeCCCccc
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (223)
.+.+.+||++|+..++.++..++++++++++|||+++ .+++..+..|++.+.+.
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~---------------- 279 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN---------------- 279 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC----------------
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc----------------
Confidence 4789999999999999999999999999999999999 77787777555544221
Q ss_pred cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC---C--------------------
Q psy15625 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA---V-------------------- 185 (223)
Q Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~-------------------- 185 (223)
....++|+++|+||+|+...+. .
T Consensus 280 ----------------------------------~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~ 325 (402)
T 1azs_C 280 ----------------------------------RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT 325 (402)
T ss_dssp ----------------------------------TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCC
T ss_pred ----------------------------------ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccc
Confidence 1224789999999999865322 1
Q ss_pred -------ChHHHHHHH-----HH--------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 186 -------PADEAKTFA-----ER--------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 186 -------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..+++..++ .. .++.++++||+++.||+++|+.+.+.
T Consensus 326 ~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 326 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHH
Confidence 124444443 21 24567899999999999999987653
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.60 E-value=6.5e-15 Score=123.10 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=67.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCcc------------------cccc--cccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNEF------------------NLES--KSTIGVEFATRSIQVDQKTIKAQIWDTAG 69 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 69 (223)
...+|+|+|..++|||||..+|+...- .... ...-++++......+.++...++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 457899999999999999999963210 0000 01112233333444555667899999999
Q ss_pred CccccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105 (223)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 105 (223)
+.+|..-....++-+|++++|+|....-..+....|
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~ 145 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM 145 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence 999999999999999999999999887776666544
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=2e-14 Score=125.79 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=68.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------------cccccee--eeEEEEEE------------EcCe
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGV--EFATRSIQ------------VDQK 58 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~--~~~~~~~~------------~~~~ 58 (223)
+...||+|+|.+|+|||||+++|+....... ..+.+++ ......+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4568999999999999999999987421110 0111111 11112222 1334
Q ss_pred EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
.+.+++|||||+.+|......+++.+|++++|+|..+..+.+...
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~ 141 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 788999999999999999999999999999999999987776654
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=116.23 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCccccc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERYRA 75 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~ 75 (223)
..+|+++|.+|||||||+|+|++..+.....++.+.++....+.+++. ...+.+||+||.....+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 478999999999999999999998765555555555555555555432 23589999999766443
Q ss_pred -------cchhhhcCCcEEEEEEeCCCccc
Q psy15625 76 -------ITSAYYRGAVGALLVYDIAKHLT 98 (223)
Q Consensus 76 -------~~~~~~~~~~~~i~v~d~~~~~~ 98 (223)
....+++.+|++++|+|+++..+
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 34567899999999999986544
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.56 E-value=8.5e-15 Score=116.19 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=36.3
Q ss_pred CceEEEeecccchhhccCCChHHHHHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE----------RNNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
..|.++|+||+|+.+.... ......+.. .++.+++.+||+++.|+++++++|.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp CSCSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 3577999999998642110 011112211 124578999999999999999998763
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.54 E-value=1.8e-14 Score=120.52 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.1
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN 37 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~ 37 (223)
..+...+|+|+|.+|+|||||+|+|++..+.
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 3456789999999999999999999998864
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=2.2e-15 Score=119.31 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=36.8
Q ss_pred CceEEEeecccchhhccCCCh--HHHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPA--DEAKTFAERN-------NLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
+.|.++|+||+|+.+...... ++.+...... ..+++++||+++.|+++++++|.+
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~ 257 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 257 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 468899999999864211110 1222211121 457899999999999999999876
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.49 E-value=1.7e-14 Score=122.80 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=66.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc--------ccc---cc-----ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF--------NLE---SK-----STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA 75 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~--------~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 75 (223)
.||+|+|+.++|||||..+|+...- ... .+ ..-++++......+.+....++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5799999999999999999964211 000 00 0113344444445666777899999999999999
Q ss_pred cchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625 76 ITSAYYRGAVGALLVYDIAKHLTYENVE 103 (223)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 103 (223)
-....++-+|++++|+|....-..+.-.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~ 110 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRI 110 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHH
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHH
Confidence 8999999999999999988765544443
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=3.7e-13 Score=102.68 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=21.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 199 LSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 199 ~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.+++++||+++.|+++++++|.+.
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEH 254 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHH
Confidence 479999999999999999998764
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.44 E-value=3.6e-12 Score=109.87 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=66.4
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCc--------ccc----------cccccceeeeEEEEEEEc-----CeEEEEEE
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE--------FNL----------ESKSTIGVEFATRSIQVD-----QKTIKAQI 64 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 64 (223)
-+...+|+|+|+.++|||||..+|+... +.. .....+++......+... +..+.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 3567889999999999999999987421 100 011111222122222222 23578999
Q ss_pred EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105 (223)
Q Consensus 65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 105 (223)
+|||||.+|..-....++-+|++++|+|....-..+.-..|
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~ 130 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW 130 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH
Confidence 99999999999999999999999999999887766555533
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=5.3e-13 Score=106.77 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCccc-
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERY- 73 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~- 73 (223)
..+++++|++|||||||+|+|++... .....|+.+.++....+.+.+. ...+.+||+||....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47899999999999999999999776 4455565555665666666542 136899999995432
Q ss_pred ------cccchhhhcCCcEEEEEEeCCC
Q psy15625 74 ------RAITSAYYRGAVGALLVYDIAK 95 (223)
Q Consensus 74 ------~~~~~~~~~~~~~~i~v~d~~~ 95 (223)
.......++.+|++++|+|+++
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445789999999999875
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=2.6e-13 Score=116.25 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=55.3
Q ss_pred cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHH----cC-CeEEEeecC
Q psy15625 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER----NN-LSFIETSAL 207 (223)
Q Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~ 207 (223)
..+|.++++.|++.+.+..+....+..+. ..+.|+++|+||+|+.+...... .... ... .+ .+++.+||+
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~-~il~-~~~~~l~lg~~~VV~iSA~ 260 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLMDEGTDAR-DVLE-NKLLPLRRGYIGVVNRSQK 260 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTTSSCTTCCSH-HHHT-TCSSCCSSCEEECCCCCCE
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcccCCcchhhH-HHHH-HHhhhhhccCCceEEeccc
Confidence 35777888888887666555433444443 34789999999999875433222 1111 001 12 357889999
Q ss_pred CCCCHHHHHHHHHh
Q psy15625 208 DSTNVETAFQNILT 221 (223)
Q Consensus 208 ~~~~i~~~~~~i~~ 221 (223)
++.|++++++.+.+
T Consensus 261 ~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 261 DIDGKKDITAALAA 274 (772)
T ss_dssp ESSSSEEHHHHHHH
T ss_pred ccccchhHHHHHHH
Confidence 99999999988764
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1.5e-13 Score=108.47 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=35.2
Q ss_pred ceEEEeecccchhhccCCChHHHHHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625 168 IVIMLVGNKSDLRHLRAVPADEAKTFAER----------NNLSFIETSALDSTNVETAFQNILTA 222 (223)
Q Consensus 168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 222 (223)
.|.++++||+|+......+....+.+... ++.+++.+||+++.|++++++.|.+.
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 45577889999643111111122233221 13578999999999999999998753
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=4.5e-12 Score=98.61 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=80.8
Q ss_pred CeEEEEEEEe-CCC-----CccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCcccc
Q psy15625 57 QKTIKAQIWD-TAG-----QERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLR 129 (223)
Q Consensus 57 ~~~~~~~~~D-~~G-----~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (223)
+..+.+..+| +.| ++.+..+.+.+++++|++++|+|.+++. ++..+..|+..+
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~-------------------- 106 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVY-------------------- 106 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHH--------------------
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHH--------------------
Confidence 3445555555 323 5667777888999999999999999876 777777554433
Q ss_pred ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCC-hHHHHHHHHHcCCeEEEeecCC
Q psy15625 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP-ADEAKTFAERNNLSFIETSALD 208 (223)
Q Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~ 208 (223)
.. .++|+++|+||+|+.+.+.+. .++...+....+.+++++||++
T Consensus 107 -------------------------------~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~ 152 (302)
T 2yv5_A 107 -------------------------------EY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT 152 (302)
T ss_dssp -------------------------------HH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred -------------------------------Hh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 22 378999999999996532212 3445566667789999999999
Q ss_pred CCCHHHHHHHHH
Q psy15625 209 STNVETAFQNIL 220 (223)
Q Consensus 209 ~~~i~~~~~~i~ 220 (223)
+.|++++++.+.
T Consensus 153 g~gi~~L~~~l~ 164 (302)
T 2yv5_A 153 GEGIDELVDYLE 164 (302)
T ss_dssp CTTHHHHHHHTT
T ss_pred CCCHHHHHhhcc
Confidence 999999998764
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.12 E-value=1.6e-10 Score=83.60 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred CCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc
Q psy15625 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH 147 (223)
Q Consensus 68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 147 (223)
+|+...+++|+.|++++|++|+|+|.++.+..+ ....+.++
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL-------------------------------------- 150 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI-------------------------------------- 150 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHH--------------------------------------
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHH--------------------------------------
Confidence 378889999999999999999999999875443 22111111
Q ss_pred cchhhhHHHHHHhhhcc-CCCceEEEeeccc-chhhccCCChHHHHHHHH----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625 148 LTYENVERWLRELRDHA-DQNIVIMLVGNKS-DLRHLRAVPADEAKTFAE----RNNLSFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 148 ~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
...+.... ..+.|++|++||. |+++ ..+..++.+... ...+.+..|||++|+|+.+.++||.+
T Consensus 151 ---------~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 151 ---------MAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp ---------HHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred ---------HHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHH
Confidence 11122211 2478999999995 6753 345554433322 13456999999999999999999976
Q ss_pred h
Q psy15625 222 A 222 (223)
Q Consensus 222 ~ 222 (223)
.
T Consensus 220 ~ 220 (227)
T 3l82_B 220 E 220 (227)
T ss_dssp T
T ss_pred H
Confidence 4
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=1.3e-10 Score=92.85 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=81.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC------cccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN------EFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV 85 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 85 (223)
.+|+++|.+|+|||||+|+|++. .......+ +++.......++.. +.++||||...........
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l----- 232 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFV----- 232 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGS-----
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHH-----
Confidence 47999999999999999999986 22222222 23333444444432 6899999964322111100
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625 86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 165 (223)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
..+....+ ...+..+++++++++........+.. +.....
T Consensus 233 ---------~~~~l~~~---------------------------~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~ 272 (369)
T 3ec1_A 233 ---------DARDLKII---------------------------TPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKG 272 (369)
T ss_dssp ---------CTTTHHHH---------------------------SCSSCCCCEEEEECTTEEEEETTTEE----EEEEES
T ss_pred ---------hHHHHHHH---------------------------hcccccCceEEEEcCCceEEECCEEE----EEEccC
Confidence 00011111 01145677777777643322222111 222333
Q ss_pred CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625 166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTN 211 (223)
Q Consensus 166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 211 (223)
.+.|+++++||+|...... .......+.+..|..+.+.++....+
T Consensus 273 ~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 273 GRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp SSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred CCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCCCCchhhhh
Confidence 5789999999999865322 23334445556666666655554433
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=5.3e-11 Score=94.97 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccc-----cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-----ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
.+|+++|.+|+|||||+|+|.+..... ......+++.......++.. +.++||||...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~ 223 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIIN 223 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCc
Confidence 579999999999999999999864211 11122233333334434333 78999999543
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=7.2e-10 Score=91.44 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHh
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~ 32 (223)
.+...|+++|.+||||||++++|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999998
No 215
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=82.44 Aligned_cols=106 Identities=9% Similarity=-0.013 Sum_probs=70.6
Q ss_pred CCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeeccc
Q psy15625 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAK 146 (223)
Q Consensus 67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 146 (223)
.+|+...+++|+.|++++|++|+|+|.++.+..+ ....+.++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL------------------------------------- 235 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI------------------------------------- 235 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHH-------------------------------------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHH-------------------------------------
Confidence 3578889999999999999999999999877644 22111111
Q ss_pred ccchhhhHHHHHHhhhcc-CCCceEEEeecc-cchhhccCCChHHHHHHHH----HcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625 147 HLTYENVERWLRELRDHA-DQNIVIMLVGNK-SDLRHLRAVPADEAKTFAE----RNNLSFIETSALDSTNVETAFQNIL 220 (223)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~ 220 (223)
...+.... ..+.|++|++|| .|+++ ..+..++.+... ...+.+..|||.+|+|+.+.++||.
T Consensus 236 ----------~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 236 ----------MAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp ----------HHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred ----------HHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHH
Confidence 11121111 247899999997 58754 344444433321 1345699999999999999999998
Q ss_pred hh
Q psy15625 221 TA 222 (223)
Q Consensus 221 ~~ 222 (223)
+.
T Consensus 304 ~~ 305 (312)
T 3l2o_B 304 EE 305 (312)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=3.7e-09 Score=85.25 Aligned_cols=60 Identities=25% Similarity=0.511 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccc--cceeeeEEEEEEEc--CeEEEEEEEeCCCCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS--TIGVEFATRSIQVD--QKTIKAQIWDTAGQE 71 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~ 71 (223)
++++|+|++|+|||||++.|.+..+...... ..+.......+... +-...+.++|++|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 5799999999999999999998754321111 11111111122122 223368899999853
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.86 E-value=1e-08 Score=78.30 Aligned_cols=27 Identities=30% Similarity=0.699 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNEFN 37 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~~~ 37 (223)
.++++++|++|+|||||++.|.+...+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 478999999999999999999986543
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.85 E-value=1.3e-07 Score=76.28 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
....++|+|++|||||||+|.+.+-.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999854
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.77 E-value=1.6e-08 Score=80.71 Aligned_cols=54 Identities=30% Similarity=0.340 Sum_probs=41.9
Q ss_pred CceEEEeecccchhhccCCChHHHHHH----HHHcCC---eEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTF----AERNNL---SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++|+++|+||+|+.+. ....++..++ +.+.|. +++.+||+++.|++++++.+.+
T Consensus 96 ~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 6899999999999652 2333444443 556677 7999999999999999999864
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=1.2e-08 Score=78.50 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=36.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 71 (223)
+..++|+++|.||||||||+|+|.+....... ...+++.....+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999987643332 2222332222232322 57899999954
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.63 E-value=1.1e-08 Score=77.78 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 72 (223)
++++++|.+|+|||||+|+|.+....... +..+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987653322 2233332222222222 578999999543
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.63 E-value=6.4e-08 Score=77.26 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=41.1
Q ss_pred CceEEEeecccchhhccCCChHHHHHH----HHHcCC---eEEEeecCCCCCHHHHHHHHHh
Q psy15625 167 NIVIMLVGNKSDLRHLRAVPADEAKTF----AERNNL---SFIETSALDSTNVETAFQNILT 221 (223)
Q Consensus 167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~ 221 (223)
++|+++|+||+|+.+. ....+..+++ +.+.|. +++.+||+++.|++++++.+.+
T Consensus 98 ~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 98 DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999752 2333444444 455666 6899999999999999998864
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=2.4e-07 Score=71.16 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=58.9
Q ss_pred cccccceeEEEeecccccchhh--hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC
Q psy15625 131 YYRGAVGALLVYDIAKHLTYEN--VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD 208 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 208 (223)
....+|+++.++|++++.+... +..++ .++|.++|+||+|+.+.. ..+....+..+.+.+++.+||++
T Consensus 20 ~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~~~~~~g~~~i~iSA~~ 89 (282)
T 1puj_A 20 KLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSVN 89 (282)
T ss_dssp HGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTTT
T ss_pred HHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHHHHHhcCCcEEEEECCC
Confidence 3467999999999999877653 33322 378999999999996421 11222333344578999999999
Q ss_pred CCCHHHHHHHHHh
Q psy15625 209 STNVETAFQNILT 221 (223)
Q Consensus 209 ~~~i~~~~~~i~~ 221 (223)
+.|++++++.+.+
T Consensus 90 ~~gi~~L~~~i~~ 102 (282)
T 1puj_A 90 GQGLNQIVPASKE 102 (282)
T ss_dssp CTTGGGHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 9999999887754
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=2.1e-07 Score=78.20 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=40.3
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEE--EE-cCeEEEEEEEeCCCCcc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSI--QV-DQKTIKAQIWDTAGQER 72 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~D~~G~~~ 72 (223)
..+..+|+|+|.||+|||||+|+|++......... +.+.+.....+ .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34578999999999999999999998764211111 11111111111 11 12334789999999654
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=3.7e-06 Score=68.19 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=42.7
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
..+.+++|+|+..+...... ...+... -.+..+|+||.|... ..-.........+.++.+++. |++++
T Consensus 212 ~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~----~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA----KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS----SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred cCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc----cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 46889999999886443322 2223221 234568899999753 223445566677888888775 66554
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.17 E-value=2.2e-06 Score=69.62 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+++|++|+||||++++|...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=1.4e-05 Score=64.80 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=42.6
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCH
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNV 212 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 212 (223)
..+.+++|+|+..+.....+ ...+... -.+..+++||.|... ..-.........+.|+.+++. |+++
T Consensus 211 ~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred CCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 35789999999886443332 2233221 135678999999753 233455666677899888876 6554
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.15 E-value=2e-06 Score=65.36 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=57.8
Q ss_pred ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCC
Q psy15625 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS 209 (223)
Q Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 209 (223)
.....+|.++.|+|++.+.+..... + . .. ++|.++|+||+|+.+... .+....+..+.|.++ .+||+++
T Consensus 17 ~~l~~~D~vl~VvDar~P~~~~~~~--l---~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPFATSAYG--V---D-FS--RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHTTCSEEEEEEETTSTTTTSCTT--S---C-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHhhCCEEEEEeeCCCCCcCcChH--H---H-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCC
Confidence 3446899999999999886665311 1 1 11 789999999999965211 122233444567888 9999999
Q ss_pred CCHHHHHHHHHh
Q psy15625 210 TNVETAFQNILT 221 (223)
Q Consensus 210 ~~i~~~~~~i~~ 221 (223)
.|++++++.+.+
T Consensus 86 ~gi~~L~~~l~~ 97 (262)
T 3cnl_A 86 PRKVLLKKLSFD 97 (262)
T ss_dssp CHHHHHHHHCCC
T ss_pred cCHHHHHHHHHH
Confidence 999999988754
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.13 E-value=1.4e-05 Score=61.79 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=51.6
Q ss_pred CceeEEEeCCCcccc--c------------cccccceeEEEeecccccchhhhHHHHHHhhhccCCCce-EEEeecccch
Q psy15625 115 QNIVIMLVGPPSLLR--R------------YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV-IMLVGNKSDL 179 (223)
Q Consensus 115 ~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 179 (223)
...+++++++++... . ....+|.++++.|+..+. +.......+.. ..| ..+|+||+|.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDG 251 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCC
Confidence 355667777665544 1 124688999999987542 22222222222 244 6788999997
Q ss_pred hhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 180 RHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
.. .......+....+.++.+++ .|++++
T Consensus 252 ~~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 252 TA----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp CT----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred Cc----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 43 23345566777788887776 455554
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.93 E-value=0.00013 Score=57.16 Aligned_cols=68 Identities=9% Similarity=-0.000 Sum_probs=40.5
Q ss_pred ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625 134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213 (223)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 213 (223)
..|..++++|+..+. +.......+.... ..-.+++||.|... ..-.........+.++.+++ +|++++
T Consensus 241 ~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred cCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 357788888977763 2223333333211 12367889999632 23345567777888888877 555553
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.93 E-value=2.6e-06 Score=65.96 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred ccccccccceeEEEeecccccchhh-hHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEe
Q psy15625 128 LRRYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIET 204 (223)
Q Consensus 128 ~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 204 (223)
.+....++|.+++|.|+..+..... +..++...+. .++|.++|+||+|+.+.... ..++........|.+++.+
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 4446689999999999997754433 3344333322 47888999999999752210 0123334444568899999
Q ss_pred ecCCCCCHHHHHHH
Q psy15625 205 SALDSTNVETAFQN 218 (223)
Q Consensus 205 Sa~~~~~i~~~~~~ 218 (223)
||+++.|++++++.
T Consensus 157 sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 157 SSKDQDSLADIIPH 170 (307)
T ss_dssp CHHHHTTCTTTGGG
T ss_pred ecCCCCCHHHHHhh
Confidence 99999998877654
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.89 E-value=1.8e-05 Score=67.16 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFN 37 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~ 37 (223)
.|+|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999987543
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.81 E-value=3.5e-05 Score=62.69 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..+..-|.|+|++++|||||+|+|.+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345677999999999999999999864
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.66 E-value=0.0001 Score=58.23 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=52.4
Q ss_pred cccccceeEEEeeccccc-chhhhHHHHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHHHcCCeEEEeecCC
Q psy15625 131 YYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLSFIETSALD 208 (223)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 208 (223)
...++|.++++.. ..+. +...+..++..... .++|.++|+||+|+.+.... ..++........|.+++.+|+++
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4578999997754 4442 22233333332222 26788999999999653210 01112223335688999999999
Q ss_pred CCCHHHHHHHH
Q psy15625 209 STNVETAFQNI 219 (223)
Q Consensus 209 ~~~i~~~~~~i 219 (223)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999987653
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=2.9e-05 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 236
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.62 E-value=2.3e-06 Score=70.49 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=57.0
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--ccccc--------h
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--YRAIT--------S 78 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~ 78 (223)
....+|+++|.+|+||||+.++|....... ...+.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999997653211 111111000000000111112346788888622 22222 4
Q ss_pred hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHh
Q psy15625 79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 112 (223)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 112 (223)
.++....+.++|+|.++. +......|.+.+.+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 456567787889999887 455556666655543
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=2.5e-05 Score=60.52 Aligned_cols=25 Identities=40% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-.++++|++|||||||+|.|.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 4789999999999999999987543
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=4.8e-05 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.53 E-value=5e-05 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.|+++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999875
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.50 E-value=7.2e-05 Score=59.10 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998654
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.49 E-value=5.8e-05 Score=54.69 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.++|+|++|||||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.43 E-value=0.00027 Score=54.71 Aligned_cols=24 Identities=58% Similarity=0.840 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-.++++|++|||||||+|.|. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 358999999999999999998 543
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.43 E-value=7.6e-05 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=7.8e-05 Score=53.40 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
++|+|++|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999998753
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.38 E-value=0.0001 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.--|+|+|++|||||||+++|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.38 E-value=0.0042 Score=48.38 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+.-.|+++|++|+||||++..|....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999987643
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.37 E-value=9.6e-05 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++|+|++|||||||++.+.+-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998753
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.37 E-value=0.00011 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=23.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
++...|+|+|++|||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999998754
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.33 E-value=0.00011 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998743
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.33 E-value=0.00012 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
--++|+|++|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998754
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.32 E-value=0.00014 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+.--|+|+|++|||||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34468999999999999999998764
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.31 E-value=0.00011 Score=51.95 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~ 32 (223)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999999854
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.29 E-value=0.00015 Score=52.82 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+...|+|+|+.|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.00015 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.|+++|++||||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.25 E-value=0.00017 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998865
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.23 E-value=0.00016 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998754
No 257
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.22 E-value=0.00018 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.22 E-value=0.00018 Score=52.14 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3479999999999999999998764
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.00017 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+++++|++|+|||||++.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.20 E-value=0.0002 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.|+|+|++||||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999764
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.19 E-value=0.0002 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-|+|+|++||||||+.++|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997643
No 262
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.19 E-value=0.00027 Score=50.91 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCCCccc-cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 1 MGTREDE-YDYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 1 ~~~~~~~-~~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
|+.+... ++....|+++|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 1 MGSDKIHHHHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp ---------CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcccccccccceEEEEECCCCCCHHHHHHHHHHh
Confidence 4444433 445789999999999999999999764
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.19 E-value=0.00021 Score=51.16 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.19 E-value=0.00023 Score=49.97 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.18 E-value=0.00018 Score=53.15 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 266
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00027 Score=49.84 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.|+++|++||||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346999999999999999998753
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.16 E-value=0.00022 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 268
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=0.00025 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~ 32 (223)
.-.|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.15 E-value=0.00029 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
..|++.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.14 E-value=0.00024 Score=49.89 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy15625 13 KVVLIGDSGVGKSNLLSRF 31 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l 31 (223)
.|+|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.13 E-value=0.00024 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.13 E-value=0.00025 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 273
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.13 E-value=0.00041 Score=53.94 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
......|+|+|++|||||||++.|.+-.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4456789999999999999999998753
No 274
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.12 E-value=0.00026 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++|+|++|+|||||++.|.+-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999998743
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.12 E-value=0.00024 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.12 E-value=0.00024 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 277
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.11 E-value=0.00033 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 278
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.11 E-value=0.00029 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 279
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.11 E-value=0.00025 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999886
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.10 E-value=0.00028 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.10 E-value=0.00028 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.09 E-value=0.00026 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.09 E-value=0.00031 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.09 E-value=0.00032 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.=.++|+|++|||||||++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 346899999999999999999874
No 285
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00032 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.08 E-value=0.00029 Score=53.44 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998754
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00035 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.|+++|++||||||+.+.|...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.07 E-value=0.00031 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.06 E-value=0.00033 Score=53.09 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998754
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.06 E-value=0.0051 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+...|+++|.+|+||||+...|...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999998753
No 291
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.05 E-value=0.0003 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.05 E-value=0.00035 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 36899999999999999999875
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.00046 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.05 E-value=0.00035 Score=52.51 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998754
No 295
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.05 E-value=0.00034 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999875
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.05 E-value=0.00032 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+|+|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999653
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.04 E-value=0.00035 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 298
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.00035 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEFN 37 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~~ 37 (223)
.++++|++|||||||+|.+.+...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 5799999999999999999876543
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.03 E-value=0.00044 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=22.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
++...|+++|++||||||+.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999987653
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.03 E-value=0.00038 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 301
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.03 E-value=0.00038 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 302
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.03 E-value=0.00046 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+|+|++|+||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999874
No 303
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.03 E-value=0.00032 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.++++|++|+|||||++.+.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998754
No 304
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.03 E-value=0.00039 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.03 E-value=0.00036 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998754
No 306
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.03 E-value=0.0027 Score=45.79 Aligned_cols=82 Identities=4% Similarity=-0.117 Sum_probs=48.8
Q ss_pred ceeEEEeCCCcccc----ccccccceeEEEeecccccchhhhHHHHHHhhhcc--CCCceEEEeecccchhhccCCChHH
Q psy15625 116 NIVIMLVGPPSLLR----RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA--DQNIVIMLVGNKSDLRHLRAVPADE 189 (223)
Q Consensus 116 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~ 189 (223)
..++++++.+.... .....+|.++++..++... ......+..+.... ..+.++.+|+|++|.... ...+
T Consensus 75 ~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLNV 149 (206)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHHH
Confidence 45666666654432 3456789999998877655 44455555554432 235678999999995431 2234
Q ss_pred HHHHHHHcCCeEE
Q psy15625 190 AKTFAERNNLSFI 202 (223)
Q Consensus 190 ~~~~~~~~~~~~~ 202 (223)
..+...+.+.+++
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 4455555554433
No 307
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.02 E-value=0.00037 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998764
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.02 E-value=0.00022 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh-hC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFT-RN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~-~~ 34 (223)
.++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.01 E-value=0.00041 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00041 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 311
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00039 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.|+++|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.00 E-value=0.00044 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999763
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.00022 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|++|+|||||++.|.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 314
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.99 E-value=0.00041 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.99 E-value=0.00047 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+...|+|+|+.|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00048 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
....|+|+|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 317
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.98 E-value=0.0005 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
+..+|+|+|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00048 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..+|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.97 E-value=0.00062 Score=53.03 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.9
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
....+-|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998754
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.97 E-value=0.00051 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.6
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.....|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999875
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.97 E-value=0.00049 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 322
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.97 E-value=0.00043 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998754
No 323
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.96 E-value=0.00052 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999965
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.96 E-value=0.00046 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.94 E-value=0.00044 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
--++|+|++|+|||||++.+.+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998743
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.93 E-value=0.0005 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+++|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999653
No 327
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.93 E-value=0.00047 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
--++++|++|||||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999999873
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.92 E-value=0.00052 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.00061 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 330
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.91 E-value=0.00039 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|++|+|||||++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998754
No 331
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.90 E-value=0.00035 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|+.|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999998753
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.90 E-value=0.00049 Score=54.67 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.87 E-value=0.00059 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
....|+|.|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.86 E-value=0.00072 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999763
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.86 E-value=0.00058 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+++|.+|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356899999999999999998743
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.86 E-value=0.00063 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999975
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.86 E-value=0.0007 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
....|+++|++|+||||+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998763
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.85 E-value=0.00055 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++++|+.|||||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999988643
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.85 E-value=0.00074 Score=47.17 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 340
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.0009 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+|+|.+||||||+.+.|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 341
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.84 E-value=0.0006 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998753
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.84 E-value=0.00065 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
No 343
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.84 E-value=0.00072 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+|+|+|||||+|...+|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 344
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.83 E-value=0.00084 Score=51.59 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.....|+|+|++|||||||.+.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999887643
No 345
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.82 E-value=0.00064 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57999999999999999998754
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.82 E-value=0.0003 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+|+|.+||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 347
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.00065 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.81 E-value=0.00079 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 349
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.81 E-value=0.00084 Score=52.04 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999874
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.81 E-value=0.00073 Score=50.03 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.5
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.+..-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999998764
No 351
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.80 E-value=0.00068 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00074 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 353
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.79 E-value=0.00081 Score=48.52 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.78 E-value=0.00071 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998754
No 355
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.78 E-value=0.0011 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+...|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998764
No 356
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.77 E-value=0.00073 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.|+++|+.||||||+++.+.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999999999998654
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.77 E-value=0.00074 Score=53.79 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998754
No 358
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.77 E-value=0.00074 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+|+|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 359
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.00075 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 360
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.76 E-value=0.00092 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
....|++.|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.76 E-value=0.0009 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..++++|.+|+|||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 362
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.76 E-value=0.00079 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.001 Score=48.28 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00086 Score=49.46 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 365
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.75 E-value=0.014 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.|+++|+.|+||||++..|....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568888999999999999997653
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.00095 Score=47.67 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.74 E-value=0.0011 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.74 E-value=0.00087 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~ 32 (223)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00083 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+.-.++++|+.||||||+++.+.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998753
No 370
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.73 E-value=0.00081 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998754
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.73 E-value=0.00083 Score=53.41 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998754
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.72 E-value=0.00087 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.++|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999874
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.72 E-value=0.00095 Score=49.16 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.71 E-value=0.00079 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++|+|++|+|||||++.+.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998753
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.70 E-value=0.0012 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.69 E-value=0.00038 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 377
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.68 E-value=0.00076 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 378
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.67 E-value=0.001 Score=48.75 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..+|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998653
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.67 E-value=0.0011 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 380
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.67 E-value=0.0015 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-|+|+|+|||||+|...+|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999998753
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.66 E-value=0.0013 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+++|.+||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.66 E-value=0.00068 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998754
No 383
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.66 E-value=0.00084 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.2
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.....|+++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998754
No 384
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.64 E-value=0.0012 Score=46.11 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=20.2
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
++..-.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 4 HHHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ----CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccccceEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999999865
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.001 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 386
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.63 E-value=0.0012 Score=46.95 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999865
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.63 E-value=0.001 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|++|||||||++.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998753
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=53.16 Aligned_cols=22 Identities=55% Similarity=0.795 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999874
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.60 E-value=0.0012 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 390
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.60 E-value=0.0014 Score=46.35 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.+++.|++|+|||+|++.+....
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999987653
No 391
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.59 E-value=0.0017 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
....|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999973
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.59 E-value=0.0012 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999874
No 393
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.0013 Score=49.56 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-|+|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999653
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.58 E-value=0.00088 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=15.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 395
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.58 E-value=0.0013 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+++|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.58 E-value=0.0013 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
..+.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 397
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.57 E-value=0.045 Score=42.05 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=46.5
Q ss_pred CceeEEEeCCCccc-----cccccccceeEEEeecccccchhhhHHHHHHhhhcc-CCCceEE-EeecccchhhccCCCh
Q psy15625 115 QNIVIMLVGPPSLL-----RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQNIVIM-LVGNKSDLRHLRAVPA 187 (223)
Q Consensus 115 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~i-vv~nK~Dl~~~~~~~~ 187 (223)
...++++++++... ......+|.++++..++.. +.......+..+.... ..+.+++ +|+|+++..
T Consensus 155 ~~yD~ViiD~p~~~~~~~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGGFAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SSCSEEEEEECCSSCCGGGGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred ccCCEEEEeCCCccchHHHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 35666676654432 3456789999998865533 3333334444444322 2355654 899999832
Q ss_pred HHHHHHHHHcCCeEEE
Q psy15625 188 DEAKTFAERNNLSFIE 203 (223)
Q Consensus 188 ~~~~~~~~~~~~~~~~ 203 (223)
+..+.+....+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3455556666666543
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.57 E-value=0.0011 Score=54.94 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|++||||||+++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998754
No 399
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.55 E-value=0.0015 Score=48.28 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=20.7
Q ss_pred ccceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 7 EYDYLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 7 ~~~~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
.++...+.+|+|+|||||||+.++|..
T Consensus 4 ~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 4 HHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -----CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccceeeECCCCCCHHHHHHHHHH
Confidence 345578999999999999999999865
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.55 E-value=0.0013 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-++++|++|+|||||++.+....
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998543
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.54 E-value=0.00067 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.54 E-value=0.0015 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..+|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0014 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+.-.++++|+.||||||+++.|.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34579999999999999999998753
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0013 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
-+|+|+|++|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.50 E-value=0.0015 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-+++++|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999874
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.49 E-value=0.0015 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.+|+|+.|+|||||++++...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999998753
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.48 E-value=0.0024 Score=47.26 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
....|+|.|++||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999997643
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.47 E-value=0.0015 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.++|+|+.|||||||++.|.+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4579999999999999999998643
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0012 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++|+|+.|||||||++.|.+-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 368999999999999999998764
No 410
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.46 E-value=0.0018 Score=48.11 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.43 E-value=0.0022 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...|+++|.+|+||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 412
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.0018 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.++++|++|+|||||++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999764
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.41 E-value=0.0017 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
-++|+|++|+|||||+..+.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999887543
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.40 E-value=0.0014 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
--++|+|..|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 415
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.39 E-value=0.0097 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.0
Q ss_pred cceeEEEEEEcCCCCcHHHHHHHHh
Q psy15625 8 YDYLFKVVLIGDSGVGKSNLLSRFT 32 (223)
Q Consensus 8 ~~~~~~i~v~G~~~~GKStli~~l~ 32 (223)
..+..-|.|+|..++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456778899999999999999664
No 416
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.36 E-value=0.0016 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++|.|++|+|||++++.+....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999987653
No 417
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.35 E-value=0.0024 Score=46.03 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
..+++.|++|+|||+|++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987643
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0022 Score=47.51 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999874
No 419
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.34 E-value=0.0024 Score=47.09 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.+++.|++|+|||+|++.+....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987643
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.33 E-value=0.0022 Score=46.71 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 421
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.32 E-value=0.0029 Score=46.11 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.1
Q ss_pred CccccceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
....++..+-|+++|..||||||+.+.|...
T Consensus 2 ~~~~~~~~~~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 2 AHHHHHHMYAIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp ----CCSCCEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcccccceeEEEEECCCCCCHHHHHHHHHHC
Confidence 3455667899999999999999999998763
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.31 E-value=0.0022 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999986
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.28 E-value=0.003 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
=.++++|+.|+|||||++.+.+...
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999998543
No 424
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.27 E-value=0.0023 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
-.++|+|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999986
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.26 E-value=0.0025 Score=43.81 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q psy15625 14 VVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~ 33 (223)
.+|+|+.|+||||++.++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999864
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.26 E-value=0.0025 Score=51.89 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-+++++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998864
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.25 E-value=0.003 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
..|+++|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.23 E-value=0.0022 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.+++.|+||+||||++.++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999888653
No 429
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.19 E-value=0.0032 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.17 E-value=0.0026 Score=53.72 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998753
No 431
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.0026 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++++|+.|+|||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999998543
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.11 E-value=0.0031 Score=53.33 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 433
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.11 E-value=0.0039 Score=42.49 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997654
No 434
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.11 E-value=0.0017 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999865
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.10 E-value=0.0033 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.++|.|++|+|||||++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 436
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.07 E-value=0.0033 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 437
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.06 E-value=0.0044 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.+.-+++.|+||+|||+|.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568888999999999999997643
No 438
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.019 Score=42.14 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=20.7
Q ss_pred eeEEEEEE--cCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLI--GDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~--G~~~~GKStli~~l~~~~ 35 (223)
|.-||+|+ |.++.||++|++++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 33466666 999999999999998763
No 439
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.0037 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
+++.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0041 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++++|+.|+|||||++.+.+-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 689999999999999999988543
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.04 E-value=0.0035 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..-.+++.|++|+|||+|++++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999764
No 442
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.04 E-value=0.0027 Score=53.81 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998753
No 443
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.03 E-value=0.0036 Score=49.71 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q psy15625 14 VVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~ 33 (223)
.+|+|+.|+|||||+++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55999999999999999873
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.03 E-value=0.0038 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...+++.|++|+|||++.+.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999763
No 445
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.00 E-value=0.003 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 78999999999999999998754
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.98 E-value=0.0039 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.|++.|++|+|||+|.+.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999864
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.98 E-value=0.0048 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
=.++++|+.|+|||||++.+.+...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3689999999999999999988543
No 448
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.96 E-value=0.0043 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.|+++|++|+||||++..|....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997643
No 449
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.96 E-value=0.004 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.+++.|++|+|||||++.+.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 358999999999999999997643
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.96 E-value=0.004 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-++|+|++|+|||||+..+...
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998863
No 451
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.95 E-value=0.0043 Score=47.97 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.|+++|++|+||||++..|.+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4568999999999999999997643
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0042 Score=51.90 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++|+|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988644
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.92 E-value=0.0057 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.0042 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..-|+++|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999753
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.89 E-value=0.0053 Score=47.27 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.+...++|.|+||+|||++.+.+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999877654
No 456
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.89 E-value=0.0064 Score=46.82 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.+++.|++|+|||++.+.+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4579999999999999999987754
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.88 E-value=0.0069 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.4
Q ss_pred ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 9 DYLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 9 ~~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.....+++.|++|+|||++.+++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999764
No 458
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.85 E-value=0.0026 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999887653
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.83 E-value=0.0065 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998654
No 460
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.0049 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998864
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.79 E-value=0.0035 Score=47.26 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
....|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988754
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.78 E-value=0.0034 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999987753
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.77 E-value=0.0062 Score=43.84 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
..|+|+|++|+|||||...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997654
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.76 E-value=0.007 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~ 33 (223)
..+|+++|++|+||||+.+.|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999988765
No 465
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.0046 Score=48.58 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998874
No 466
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0058 Score=45.26 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998777543
No 467
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.73 E-value=0.0064 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|.|++|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999998653
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.0055 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
--+.|+|++|+|||||+..+....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998753
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.0057 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCccc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEFN 37 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~~ 37 (223)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999986543
No 470
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.69 E-value=0.0063 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...+++.|+||+|||++.+.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.68 E-value=0.0075 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|++.|.+||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0062 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~ 35 (223)
+++.|++|+||||+++.+.+.-
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 473
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.63 E-value=0.0058 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~ 33 (223)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998865
No 474
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.62 E-value=0.0014 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~~~ 36 (223)
++|+|+.|||||||++.+.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999987544
No 475
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.62 E-value=0.005 Score=51.59 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
+...|+|+|++|||||||.+.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34679999999999999999997653
No 476
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.0091 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-|+|+|++|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 477
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.59 E-value=0.013 Score=42.31 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=27.0
Q ss_pred CCCccccceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~ 33 (223)
+|.+....+..-|+|+|.++|||+++.+.+..
T Consensus 2 ~~~~~~~~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 2 SMAPLGGAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence 45666677888999999999999999988865
No 478
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.58 E-value=0.007 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-.|++.|+||+|||+|.+++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356999999999999999999864
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.57 E-value=0.0078 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..-|+|.|.+||||||+++.|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999998654
No 480
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.56 E-value=0.0076 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+...+++.|+||+|||+|.+++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999764
No 481
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.56 E-value=0.0094 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998753
No 482
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0074 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
+--|++.|+||+|||+|.+++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999764
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.54 E-value=0.0082 Score=43.45 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTR 33 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~ 33 (223)
-.+|+|+.|+||||++.++..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 357889999999999999854
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.54 E-value=0.0076 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46999999999999999998763
No 485
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.50 E-value=0.0038 Score=42.45 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999888654
No 486
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.50 E-value=0.0065 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
..-|.|.|.+||||||+++.|...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998754
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.47 E-value=0.009 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNEF 36 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~~ 36 (223)
.++++|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999996543
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.46 E-value=0.0082 Score=47.01 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q psy15625 14 VVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 14 i~v~G~~~~GKStli~~l~~~ 34 (223)
+++.|++|+||||+++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998765
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.45 E-value=0.0037 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
.+++.|++|+|||+|.+++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999764
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.0073 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.++|.|++|+||||+++.+....
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997643
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.43 E-value=0.0097 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 11 LFKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 11 ~~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.-.+.+.|++|+|||+|++++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999987643
No 492
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.42 E-value=0.005 Score=56.93 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
+|+++|++|||||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7999999999999999999764
No 493
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0095 Score=48.29 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
++--|++.|+||+|||+|.+++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999764
No 494
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.39 E-value=0.0083 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~~ 35 (223)
-.++++|++|+|||||++.+.+..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999987643
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.39 E-value=0.012 Score=43.24 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 10 YLFKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 10 ~~~~i~v~G~~~~GKStli~~l~~~ 34 (223)
...-|.+.|.+||||||+++.|...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998754
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.39 E-value=0.0053 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRNE 35 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~~ 35 (223)
.++|+|+.|+|||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
No 497
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.36 E-value=0.0088 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q psy15625 13 KVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 13 ~i~v~G~~~~GKStli~~l~~~ 34 (223)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 498
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.35 E-value=0.0088 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.++|.|+||+|||++.+.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.34 E-value=0.0091 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
-.+++.|++|+|||||++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 500
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.33 E-value=0.0099 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625 12 FKVVLIGDSGVGKSNLLSRFTRN 34 (223)
Q Consensus 12 ~~i~v~G~~~~GKStli~~l~~~ 34 (223)
.-|+|.|.+||||||+++.|...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
Done!