RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15625
(223 letters)
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 306 bits (785), Expect = e-107
Identities = 158/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 19 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
KAQIWDTAG ERYRAITSAYYRGAVGALLVYDIAKHLT
Sbjct: 79 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---------------------- 116
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
YENVERWL+ELRDHAD NIVIMLVGNKSDLR
Sbjct: 117 -----------------------------YENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 302 bits (776), Expect = e-105
Identities = 117/223 (52%), Positives = 144/223 (64%), Gaps = 53/223 (23%)
Query: 1 MGTR--EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK 58
M + +YD LFK+VLIGDSGVGKSNLLSRFT+NEFN++SKSTIGVEFATR+++++ K
Sbjct: 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 118
IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYDI+K +
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS-------------------- 100
Query: 119 IMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSD 178
YEN WL ELR++AD N+ + L+GNKSD
Sbjct: 101 -------------------------------YENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 179 LRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
L HLRAVP +E+KTFA+ N L F ETSAL+S NV+ AF+ ++
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN 172
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 299 bits (769), Expect = e-105
Identities = 88/221 (39%), Positives = 111/221 (50%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V + I
Sbjct: 5 SATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 64
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + T
Sbjct: 65 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---------------------- 102
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
Y ++ WL + R+ + N VI+L+GNK+DL
Sbjct: 103 -----------------------------YNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
R V +EAK FAE N L F+E SA NVE AF
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 299 bits (769), Expect = e-105
Identities = 88/220 (40%), Positives = 109/220 (49%), Gaps = 51/220 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G + YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I V K +K
Sbjct: 1 GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
QIWDTAGQER+R++T +YYRGA GALLVYDI T
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET----------------------- 97
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
Y + WL + R A QNIVI+L GNK DL
Sbjct: 98 ----------------------------YNALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
R V EA FA+ N L F+ETSAL NVE AF
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 299 bits (767), Expect = e-104
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
+ ++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + +
Sbjct: 15 VPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV 74
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH T
Sbjct: 75 KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---------------------- 112
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
Y VERWL+EL DHA+ IV+MLVGNKSDL
Sbjct: 113 -----------------------------YAVVERWLKELYDHAEATIVVMLVGNKSDLS 143
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
R VP +EA+ FAE N L F+ETSALDSTNVE AF+ +L
Sbjct: 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 299 bits (767), Expect = e-104
Identities = 153/214 (71%), Positives = 157/214 (73%), Gaps = 51/214 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQERYR ITSAYYRGAVGALLVYDIAKHLT
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLT----------------------------- 92
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
YENVERWL+ELRDHAD NIVIMLVGNKSDLRHLRAVP
Sbjct: 93 ----------------------YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT 130
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 297 bits (763), Expect = e-104
Identities = 86/217 (39%), Positives = 107/217 (49%), Gaps = 51/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
D+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + V KT+K QI
Sbjct: 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQI 78
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+R++T +YYRGA GALLVYDI T
Sbjct: 79 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRET-------------------------- 112
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
Y ++ WL + R A NIV++L GNK DL R
Sbjct: 113 -------------------------YNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE 147
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V EA FA+ N L F+ETSAL NVE AF
Sbjct: 148 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 297 bits (763), Expect = e-104
Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 51/216 (23%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
EYDYLFK++LIG+SGVGKS LL RF+ + + + STIGV+F +++++D KT+K QIW
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAGQER+R ITS+YYRG+ G ++VYD+ +
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQES--------------------------- 95
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
+ V+ WL+E+ +A ++ +LVGNK DL+ R V
Sbjct: 96 ------------------------FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV 131
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
D AK FA+ N + F+ETSALDSTNVE AF +
Sbjct: 132 EYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 167
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 294 bits (756), Expect = e-103
Identities = 87/221 (39%), Positives = 119/221 (53%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
M + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTI
Sbjct: 6 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---------------------- 103
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
+ NV++WL+E+ +A +N+ +LVGNK DL
Sbjct: 104 -----------------------------FNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+ V AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 294 bits (754), Expect = e-103
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 51/220 (23%)
Query: 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA 62
K+VL+GD G GKS+L+ RF +++F +STIG F ++++ V+ T+K
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKF 63
Query: 63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 122
+IWDTAGQERY ++ YYRGA A++V+D+ +
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS------------------------ 99
Query: 123 GPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL 182
+E ++W++EL+ + N+V+ L GNKSDL
Sbjct: 100 ---------------------------FERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 183 RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
R V A++A+T+A+ N L F+ETSA +TNV+ F I
Sbjct: 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 294 bits (755), Expect = e-103
Identities = 86/217 (39%), Positives = 108/217 (49%), Gaps = 51/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +D K IK QI
Sbjct: 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQE +R+IT +YYRGA GALLVYDI + T
Sbjct: 75 WDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------------------------- 108
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+ ++ WL + R H+ N+VIML+GNKSDL R
Sbjct: 109 -------------------------FNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD 143
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V +E + FA + L F+ETSA + NVE AF N
Sbjct: 144 VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 293 bits (752), Expect = e-102
Identities = 87/221 (39%), Positives = 119/221 (53%), Gaps = 51/221 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
M + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++D KTI
Sbjct: 23 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ +
Sbjct: 83 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---------------------- 120
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
+ NV++WL+E+ +A +N+ +LVGNK DL
Sbjct: 121 -----------------------------FNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+ V AK FA+ + F+ETSA ++TNVE +F +
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 192
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 293 bits (752), Expect = e-102
Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 52/222 (23%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
G +++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ K +
Sbjct: 19 SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K QIWDTAGQER+R IT +YYR A GA+L YDI K +
Sbjct: 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---------------------- 116
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
+ +V W+ ++R +A NIV +L+GNKSDL
Sbjct: 117 -----------------------------FLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 181 HLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT 221
LR V EA++ AE + L IETSA DS+NVE AF + T
Sbjct: 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 292 bits (750), Expect = e-102
Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 51/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
++YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F ++++++ + +K QI
Sbjct: 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+R+IT +YYR A +L YDI +
Sbjct: 80 WDTAGQERFRSITQSYYRSANALILTYDITCEES-------------------------- 113
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+ + WLRE+ +A ++ +LVGNK DL R
Sbjct: 114 -------------------------FRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 148
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V A+ F+E ++ ++ETSA +S NVE F ++
Sbjct: 149 VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 185
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 292 bits (750), Expect = e-102
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 51/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F ++I + K IK QI
Sbjct: 2 SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAG ERYR IT+AYYRGA+G +L+YDI +
Sbjct: 62 WDTAGLERYRTITTAYYRGAMGFILMYDITNEES-------------------------- 95
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+ V+ W +++ ++ N ++LVGNK D+ R
Sbjct: 96 -------------------------FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 130
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V ++ + A+ F E SA D+ NV+ F+ ++
Sbjct: 131 VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 289 bits (742), Expect = e-101
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 49/216 (22%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-TIKAQIWD 66
+ K+V++GD GK++L + F + F + K TIG++F R I + + QIWD
Sbjct: 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
GQ + Y GA G LLVYDI + ++EN+E W
Sbjct: 63 IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV------------------ 104
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
++++ + ++ ++ LVGNK DL H+R +
Sbjct: 105 ------------------------------VKKVSEESETQPLVALVGNKIDLEHMRTIK 134
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
++ F + N S SA +V FQ +
Sbjct: 135 PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 289 bits (742), Expect = e-101
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 52/221 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTI 60
G+ D YD FKV+L+GDSGVGK+ LL RF F + ST+G++F + + VD +
Sbjct: 1 GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K Q+WDTAGQER+R++T AYYR A LL+YD+ +
Sbjct: 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---------------------- 98
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
++N++ WL E+ ++A ++ +ML+GNK D
Sbjct: 99 -----------------------------FDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
H R V ++ + A+ L F+ETSA NV+ AF I
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 289 bits (742), Expect = e-101
Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 51/220 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G DY+FK++LIG+S VGK++ L R+ + F ST+G++F +++ K IK
Sbjct: 13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK 72
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
QIWDTAGQERYR IT+AYYRGA+G LL+YDIA +
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES----------------------- 109
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
+ V+ W +++ ++ N ++LVGNK DL
Sbjct: 110 ----------------------------FAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
R VPA++ + A+ F E SA ++ NV+ F+ ++
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 288 bits (740), Expect = e-100
Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 52/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+YD+LFK+++IGDSGVGKS+LL RF N F+ +TIGV+F R+++++ + +K QI
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+R ITS YYRG G ++VYD+ ++ NV+RWL E+ + D
Sbjct: 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---------- 112
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
++ +LVGNK+D +
Sbjct: 113 ------------------------------------------DVCRILVGNKNDDPERKV 130
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V ++A FA + + ETSA ++ NVE F I
Sbjct: 131 VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 287 bits (738), Expect = e-100
Identities = 79/217 (36%), Positives = 112/217 (51%), Gaps = 51/217 (23%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
YDYLFK++LIGDSGVGK+ +L RF+ + FN STIG++F R+I++D K IK QIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAGQER+R IT+AYYRGA+G +LVYDI +
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKS--------------------------- 95
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
++N+ W+R + +HA ++ M++GNK D+ R V
Sbjct: 96 ------------------------FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQV 131
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
+ + A + F+ETSA + NVE AF +
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 287 bits (737), Expect = e-100
Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 51/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+++ K+++IG+SGVGKS+LL RFT + F+ E +TIGV+F ++I VD K I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+R +T +YYRGA G +LVYD+ + T+ ++ WL EL + +N
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN-------- 120
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+IV MLVGNK D R
Sbjct: 121 ------------------------------------------DIVNMLVGNKIDK-ENRE 137
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V +E FA ++++ FIE SA V+ AF+ ++
Sbjct: 138 VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 174
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 285 bits (733), Expect = e-100
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 51/215 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
Y FKVVL+G+ VGK++L+ R+ N+FN + +T+G F T+ + + K + IWDT
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQER+ A+ YYR + GA+LVYDI +
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDS----------------------------- 93
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
++ V+ W++ELR I + +VGNK DL R V
Sbjct: 94 ----------------------FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI 131
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
EA+++AE TSA + +E F ++
Sbjct: 132 QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR 166
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 286 bits (734), Expect = 1e-99
Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 51/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+ +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ +K +K QI
Sbjct: 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQERYR IT+AYYRGA+G +L+YDI +
Sbjct: 77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEES-------------------------- 110
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+ V+ W +++ ++ N ++LVGNK D+ R
Sbjct: 111 -------------------------FNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV 145
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
VP ++ + AE+ F E SA ++ +V AF+ ++
Sbjct: 146 VPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 286 bits (734), Expect = 1e-99
Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 52/219 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
D+ +V++IG GVGK++L+ RFT + F KST+GV+F +++++ K I+ QI
Sbjct: 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+ +ITSAYYR A G +LVYDI K T
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKET-------------------------- 113
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
++++ +W++ + +A ++ ++LVGNK D R
Sbjct: 114 -------------------------FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 148
Query: 185 VPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
+ + + FA++ + F E SA D+ NV+ F ++
Sbjct: 149 ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 187
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 285 bits (732), Expect = 3e-99
Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 51/218 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
KV L+GD+GVGKS+++ RF ++ F+ TIG F T+++ + K I
Sbjct: 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+ ++ YYRG+ A++VYDI K +
Sbjct: 77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS-------------------------- 110
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+ +++W++EL++H +NIV+ + GNK DL +R
Sbjct: 111 -------------------------FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIRE 145
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
VP +AK +AE +ETSA ++ N+E FQ I
Sbjct: 146 VPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 284 bits (730), Expect = 6e-99
Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 60/227 (26%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ------- 57
+ +YDYL K + +GDSGVGK+++L ++T +FN + +T+G++F + +
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 58 ---KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
+ I Q+WDTAG ER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ HA
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 115 QNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174
+N I+L G
Sbjct: 125 --------------------------------------------------SENPDIVLCG 134
Query: 175 NKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
NKSDL RAV +EA+ AE+ + + ETSA + TN+ A + +L
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 285 bits (731), Expect = 7e-99
Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 52/217 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
YD + K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K Q+
Sbjct: 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER+R IT+AYYRGA+G +LVYD+ T
Sbjct: 74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERT-------------------------- 107
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
+ N+++W + + +HA+ ++LVGNKSD+ R
Sbjct: 108 -------------------------FTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRV 141
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V AD+ + A+ + FIE+SA + NV F +
Sbjct: 142 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 284 bits (730), Expect = 8e-99
Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 51/221 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++
Sbjct: 7 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 66
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
Q+WDTAG ER+R++ +Y R + A++VYDI +
Sbjct: 67 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS----------------------- 103
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
++ +W+ ++R +++IMLVGNK+DL
Sbjct: 104 ----------------------------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
R V +E + A+ N+ FIETSA NV+ F+ + A
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 283 bits (726), Expect = 9e-99
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 52/215 (24%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
+ K+V++G+ VGKS+++ R+ + F + K TIGV+F R IQV+ + ++ +WDT
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQE + AIT AYYRGA +LV+ ++E + W ++
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG------------- 108
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
+I LV NK DL +
Sbjct: 109 ---------------------------------------DIPTALVQNKIDLLDDSCIKN 129
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
+EA+ A+R L F TS + NV F+ +
Sbjct: 130 EEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 284 bits (729), Expect = 2e-98
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 60/227 (26%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK------ 58
+YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + + +
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 59 ----TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
+ Q+WDTAGQER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ +A
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 115 QNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174
+N I+L+G
Sbjct: 139 --------------------------------------------------CENPDIVLIG 148
Query: 175 NKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
NK+DL R V +A+ A++ + + ETSA NVE A + +L
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 282 bits (725), Expect = 2e-98
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 51/211 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
KV L+GD+GVGKS+++ RF + F+ TIG F T+++Q + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+RA+ YYRG+ A++VYDI K T
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEET--------------------------------- 93
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
+ ++ W+RELR H +IV+ + GNK DL +R V +AK
Sbjct: 94 ------------------FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
+A+ + F+ETSA ++ N+ F I
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEISRR 166
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 282 bits (723), Expect = 5e-98
Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 54/221 (24%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ +D + IK Q+
Sbjct: 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
Query: 65 WDTAGQERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
WDTAGQER+R ++ YYR + VYD+ ++ ++ W+ E + H N
Sbjct: 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN------- 126
Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
+I +LVGNK DLR
Sbjct: 127 -------------------------------------------DIPRILVGNKCDLRSAI 143
Query: 184 AVPADEAKTFAERNNLSFIETSAL---DSTNVETAFQNILT 221
VP D A+ FA+ +++ ETSA D+ +VE F +
Sbjct: 144 QVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 282 bits (724), Expect = 7e-98
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 47/216 (21%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
DTAGQER++++ A+YRGA +LV+D+ T++ ++ W E A
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP---------- 112
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
+N +++GNK DL + +
Sbjct: 113 -------------------------------------RDPENFPFVVLGNKIDLENRQVA 135
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+NN+ + ETSA ++ NVE AFQ I
Sbjct: 136 TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 280 bits (719), Expect = 1e-97
Identities = 75/213 (35%), Positives = 108/213 (50%), Gaps = 51/213 (23%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAG
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
QERY ++ YYRGA A++VYDI +
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEES------------------------------- 93
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
+ + W++EL+ A NIVI L GNK+DL + RAV E
Sbjct: 94 --------------------FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
A+++A+ N+L F+ETSA S NV F I
Sbjct: 134 AQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 280 bits (718), Expect = 2e-97
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 51/221 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
FK+V +G+ VGK++L++RF + F+ ++TIG++F ++++ ++ +T++
Sbjct: 5 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 64
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
Q+WDTAGQER+R++ +Y R + A++VYDI +
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS----------------------- 101
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
+ +W+ ++R +++IMLVGNK+DL
Sbjct: 102 ----------------------------FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
R V +E + A+ N+ FIETSA NV+ F+ + A
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 280 bits (718), Expect = 2e-97
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 49/216 (22%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
LFKV+L+GD GVGKS+L++R+ N+F+ + TIGVEF + ++VD + QIWD
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQER+R++ + +YRG+ LL + + +++N+ W +E +AD
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK---------- 112
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
++ +++GNK D+ R V
Sbjct: 113 -------------------------------------EPESFPFVILGNKIDISE-RQVS 134
Query: 187 ADEAKTFAERN-NLSFIETSALDSTNVETAFQNILT 221
+EA+ + N + + ETSA D+TNV AF+ +
Sbjct: 135 TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 280 bits (718), Expect = 4e-97
Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 57/227 (25%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
+ +K+VL GD+ VGKS+ L R +NEF +T+GV+F +++ VD +
Sbjct: 18 GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT 77
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
Q+WDTAGQER+R+I +Y+R A G LL+YD+ +
Sbjct: 78 VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---------------------- 115
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
+ N+ W+ + D A + + IMLVGNK+D+R
Sbjct: 116 -----------------------------FLNIREWVDMIEDAAHETVPIMLVGNKADIR 146
Query: 181 HL------RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+ VP + A F ETSA D +N+ A ++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 278 bits (712), Expect = 6e-96
Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 52/218 (23%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE-FATRSIQVDQKTIKAQ 63
+ + +K+ LIGD GVGK+ ++R F +T+G + IK
Sbjct: 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64
Query: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
+WDTAGQE+ +
Sbjct: 65 VWDTAGQEKKAVLKDV-------------------------------------------- 80
Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
YY GA GA+L +D+ +T +N+ RW++E + I++ NK D+++ +
Sbjct: 81 -------YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ 133
Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+ + N + E SA + N F ++
Sbjct: 134 KISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 275 bits (705), Expect = 2e-95
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 52/213 (24%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
D + K++LIGDSGVGKS LL RF ++FN +TIG++F +++ ++ K +K QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQER+R IT+AYYRGA+G +LVYDI T
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERT------------------------------ 90
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
+ N+++W + + +HA+ ++LVGNKSD+ R V AD
Sbjct: 91 ---------------------FTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+ + A+ + FIE+SA + NV F +
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 275 bits (706), Expect = 3e-95
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 54/223 (24%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTR--NEFNLESKSTIGVEFATRSIQVDQKTIKA 62
+ KV ++G++ VGKS L+S FT ++F + T GVE + + T+
Sbjct: 14 DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73
Query: 63 QIW--DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
+++ DTAG + Y+ S Y+ G A+LV+D++ ++E+ + W L+
Sbjct: 74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA-------- 125
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
R ++ + +LV NK+DL
Sbjct: 126 ----------------------------------------RPDRERPLRAVLVANKTDLP 145
Query: 181 HLR-AVPADEAKTFAERNNLSFIETSA-LDSTNVETAFQNILT 221
R V D A+ +A N L F + SA + + F +I T
Sbjct: 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 267 bits (685), Expect = 3e-92
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 50/219 (22%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQI 64
+ KV+++GDSGVGK++L+ R+ ++++ + K+TIG +F T+ + VD K Q+
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
WDTAGQER++++ A+YRGA +LVYD+ ++EN++ W E HA+ N
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN-------- 114
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL-R 183
+ + +++GNK D +
Sbjct: 115 ---------------------------------------SPETFPFVILGNKIDAEESKK 135
Query: 184 AVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILT 221
V A+ A+ ++ TSA ++ NV+TAF+ I
Sbjct: 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 268 bits (687), Expect = 4e-92
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 54/221 (24%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
+ E FK+VL+GD G GK+ + R EF + +T+GVE ++ I
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
K +WDTAGQE++ + YY A A++++D+ +TY+NV W R+L +
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE------ 118
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
NI I+L GNK D++
Sbjct: 119 ----------------------------------------------NIPIVLCGNKVDIK 132
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
+ ++ F + NL + + SA + N E F +
Sbjct: 133 DRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 245 bits (627), Expect = 4e-83
Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 91/253 (35%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA---- 62
E +K VL+G+S VGKS+++ R T++ F+ + +TIG F T + ++ IK
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 63 ---------------------------------QIWDTAGQERYRAITSAYYRGAVGALL 89
IWDTAGQERY +I YYRGA A++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT 149
V+DI+ T + + W+ +L+
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--------------------------------------- 143
Query: 150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS 209
N +I+LV NK D V E + +A+ NNL FI+TSA
Sbjct: 144 --------------ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTG 188
Query: 210 TNVETAFQNILTA 222
TN++ F +
Sbjct: 189 TNIKNIFYMLAEE 201
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 232 bits (593), Expect = 4e-78
Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 51/221 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
+ + D +FKV+L+G+SGVGKS L F + + + + R I VD++ +
Sbjct: 14 LYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT 73
Query: 62 AQIWDTAGQERYRA-ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
++D Q + + L+V+ + ++ V L LR
Sbjct: 74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR---------- 123
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
++ ++LVGNKSDL
Sbjct: 124 ----------------------------------------AGRPHHDLPVILVGNKSDLA 143
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
R V +E + A + IETSA N F+ +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 224 bits (572), Expect = 2e-75
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 54/214 (25%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K+VL+G++ VGKS+++ RF N+F + TIG F T+ + +++ T+K +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
R+ ++ YYR A AL+VYD+ K +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQS--------------------------------- 90
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL---RAVPAD 188
+ W++EL + A ++I+I LVGNK D R V +
Sbjct: 91 ------------------FIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
E + AE L F ETSA NV F I
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 221 bits (566), Expect = 2e-74
Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 51/211 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
+FKV+L+G+SGVGKS L F + + + + R I VD++ + ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 71 ERYRA-ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
+ + L+V+ + ++ V L LR
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR------------------- 102
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
++ ++LVGNKSDL R V +E
Sbjct: 103 -------------------------------AGRPHHDLPVILVGNKSDLARSREVSLEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ A + IETSA N F+ +
Sbjct: 132 GRHLAGTLSCKHIETSAALHHNTRELFEGAV 162
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 214 bits (548), Expect = 2e-71
Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 53/213 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L++VVL+GD GVGK++L S F + + +G + R++ VD + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 71 ERYRAITS--AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
E+ S + +G ++VY IA ++E+ +L
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL------------------- 103
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
R H ++ I+LVGNK+DL R V +
Sbjct: 104 -------------------------------RRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
E + A + FIETSA NV F+ ++
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 214 bits (547), Expect = 3e-71
Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 51/219 (23%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G L KV+++G GVGKS L +F +EF + + T + + + +D + ++
Sbjct: 9 GGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQ 67
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
I DTAGQE Y AI Y+R G L V+ I + ++ + ++
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI------------ 115
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
LR D+N+ +LVGNKSDL
Sbjct: 116 --------------------------------------LRVKEDENVPFLLVGNKSDLED 137
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
R V +EAK AE+ N++++ETSA NV+ F +++
Sbjct: 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 212 bits (541), Expect = 5e-70
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 51/217 (23%)
Query: 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
+ L KV+++G GVGKS L +F +EF + + T + + + +D + ++
Sbjct: 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQID 65
Query: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
I DTAGQE Y AI Y+R G L V+ I + ++ + ++
Sbjct: 66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI-------------- 111
Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
LR D+N+ +LVGNKSDL R
Sbjct: 112 ------------------------------------LRVKEDENVPFLLVGNKSDLEDKR 135
Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
V +EAK AE+ N++++ETSA NV+ F +++
Sbjct: 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 209 bits (535), Expect = 4e-69
Identities = 52/225 (23%), Positives = 85/225 (37%), Gaps = 56/225 (24%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKT 59
+ + ++VVLIG+ GVGKS L + F +++S +G + R++ VD ++
Sbjct: 27 SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 60 ---IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
I +W+ G+ + + + L+VY I ++E +LR
Sbjct: 87 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR------ 138
Query: 117 IVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNK 176
R ++I I+LVGNK
Sbjct: 139 --------------------------------------------RARQTEDIPIILVGNK 154
Query: 177 SDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
SDL R V E + A + FIETSA NV+ F+ I+
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 207 bits (529), Expect = 8e-69
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 51/210 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
L KV+++G GVGKS L +F +EF + + T + + + +D + ++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
E Y AI Y+R G L V+ I + ++ + ++
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI--------------------- 101
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
LR D+N+ +LVGNKSDL R V +EA
Sbjct: 102 -----------------------------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132
Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
K A++ N++++ETSA NV+ F +++
Sbjct: 133 KNRADQWNVNYVETSAKTRANVDKVFFDLM 162
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 202 bits (516), Expect = 1e-66
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 51/214 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
K+V++G GVGKS L +F ++ F + TI + T+ VD + I D
Sbjct: 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQE + A+ Y R G LLV+ I ++ V + ++
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI----------------- 106
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
LR + ++LVGNK+DL R VP
Sbjct: 107 ---------------------------------LRVKDRDDFPVVLVGNKADLESQRQVP 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
EA F +++++ E SA NV+ AF+ ++
Sbjct: 134 RSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 202 bits (517), Expect = 1e-66
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 51/213 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
KVV++G VGK++L +F EF+ T+ + ++ + + + + DT
Sbjct: 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDT 79
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQ+ Y + ++ G G +LVY + +++ +E ++L
Sbjct: 80 AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL------------------ 121
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
H + ++LVGNK+DL R V A
Sbjct: 122 --------------------------------HEGHGKTRVPVVLVGNKADLSPEREVQA 149
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
E K AE +F+E+SA ++ + F ++
Sbjct: 150 VEGKKLAESWGATFMESSARENQLTQGIFTKVI 182
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 202 bits (515), Expect = 2e-66
Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 60/220 (27%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDQK---TIKAQIWD 66
K++++G++G GK+ LL + + + + +T+G++ IQ+ K + +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
AG+E + + + L VYD++K
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSK------------------------------- 91
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLR 183
+ ++ WL ++ A + ++LVG D+ + +
Sbjct: 92 -------------------GQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRK 131
Query: 184 AVPADEAKTFAERNNLSFI-ETSALDSTNVETAFQNILTA 222
A + K + I + +++T A +
Sbjct: 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 199 bits (509), Expect = 9e-66
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 52/210 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
++KV+L+G GVGKS L F E E+ G + RSI VD + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
+ R + ++VY + ++E +LR
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA------------------ 101
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
++ I+LVGNKSDL R V DE
Sbjct: 102 --------------------------------RQTDDVPIILVGNKSDLVRSREVSVDEG 129
Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
+ A + FIETSA NV+ F+ ++
Sbjct: 130 RACAVVFDCKFIETSAALHHNVQALFEGVV 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 199 bits (509), Expect = 2e-65
Identities = 52/220 (23%), Positives = 84/220 (38%), Gaps = 56/220 (25%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKT---IK 61
+ ++VVLIG+ GVGKS L + F +++S +G + R++ VD ++ I
Sbjct: 1 EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
+W+ G+ + + + L+VY I ++E +LR
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR----------- 107
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
R ++I I+LVGNKSDL
Sbjct: 108 ---------------------------------------RARQTEDIPIILVGNKSDLVR 128
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
R V E + A + FIETSA NV+ F+ I+
Sbjct: 129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 186 bits (476), Expect = 1e-60
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 51/213 (23%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
K+ ++G VGKS+L +F +F TI F T+ I V+ + Q+ DT
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDT 61
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQ+ Y Y G +LVY + ++E ++ +L
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL------------------ 103
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
L I IMLVGNK DL R +
Sbjct: 104 --------------------------------LDMVGKVQIPIMLVGNKKDLHMERVISY 131
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
+E K AE N +F+E+SA ++ F+ I+
Sbjct: 132 EEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 186 bits (476), Expect = 1e-60
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 52/215 (24%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
E +K+V++GD GVGKS L +F + F + TI + + ++D + + D
Sbjct: 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLD 72
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
TAGQE + A+ Y R G L+VY + ++E+V+R+ + + D
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD------------ 120
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
++ ++LV NK DL HLR V
Sbjct: 121 --------------------------------------RESFPMILVANKVDLMHLRKVT 142
Query: 187 ADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
D+ K A + N+ +IETSA D NV+ F +++
Sbjct: 143 RDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 185 bits (472), Expect = 1e-59
Identities = 49/214 (22%), Positives = 79/214 (36%), Gaps = 51/214 (23%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
E ++VV+ G GVGKS+L+ RF + F TI + + I D+ QI D
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
T G ++ A+ +LV+ + + E + + +
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG------------ 110
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
+ ++I +MLVGNK D R V
Sbjct: 111 -------------------------------------SVEDIPVMLVGNKCDETQ-REVD 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
EA+ A+ +F+ETSA + NV+ FQ +L
Sbjct: 133 TREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 181 bits (463), Expect = 1e-58
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 50/209 (23%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
++V + G GVGKS+L+ RF + F T+ + + I D+ QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ A+ +LVY I + E ++ ++ +
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV--------------- 107
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++I IMLVGNK D R V + EA+
Sbjct: 108 ----------------------------------ESIPIMLVGNKCDESPSREVQSSEAE 133
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A +F+ETSA + NV+ FQ +L
Sbjct: 134 ALARTWKCAFMETSAKLNHNVKELFQELL 162
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 179 bits (458), Expect = 4e-58
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++E++ ++ +++ D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD----------------- 105
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++ ++LVGNKSDL R V + +A+
Sbjct: 106 ---------------------------------SDDVPMVLVGNKSDLAA-RTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A + +IETSA VE AF ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 179 bits (457), Expect = 7e-58
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 51/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+KVV++G GVGKS L +F F + TI +F + I+VD +I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ ++ Y + G +LVY + ++++++ ++
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI---------------------- 100
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
+R + + ++LVGNK DL R V + E +
Sbjct: 101 ----------------------------IRVKRYEKVPVILVGNKVDLESEREVSSSEGR 132
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
AE F+ETSA T V+ F I+
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 176 bits (448), Expect = 3e-56
Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 58/219 (26%)
Query: 2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
G+ E +K+V++G GVGKS L + +N F E TI + + + +D +T
Sbjct: 1 GSTE------YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCL 53
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
I DTAGQE Y A+ Y R G L V+ I ++E++ + ++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI------------ 101
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
R +++ ++LVGNK DL
Sbjct: 102 --------------------------------------KRVKDSEDVPMVLVGNKCDLPS 123
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
R V +A+ A + FIETSA V+ AF ++
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 174 bits (445), Expect = 4e-56
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 52/210 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L +F + F + TI + + ++VD + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
++ A+ Y + G LVY I T+ +++ ++
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---------------------- 100
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
LR +++ ++LVGNK DL R V ++ +
Sbjct: 101 ----------------------------LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
A + N +F+E+SA NV F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 174 bits (444), Expect = 1e-55
Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 52/209 (24%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
+K+V++G GVGKS L + +N F E TI + + + +D +T I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y A+ Y R G L V+ I ++ ++ + +++ D
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD----------------- 123
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
++ ++LVGNK DL R V +A
Sbjct: 124 ---------------------------------SDDVPMVLVGNKCDL-PTRTVDTKQAH 149
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
A+ + FIETSA VE AF ++
Sbjct: 150 ELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 174 bits (444), Expect = 2e-55
Identities = 50/214 (23%), Positives = 74/214 (34%), Gaps = 53/214 (24%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
K+ + G +GVGKS L+ RF F E T+ + +D + + +I DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDT 83
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
AGQE + R G +LVYDI ++E V L
Sbjct: 84 AGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL------------------ 124
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
+N+ ++LVGNK+DL H R V
Sbjct: 125 --------------------------------DEIKKPKNVTLILVGNKADLDHSRQVST 152
Query: 188 DEAKTFAERNNLSFIETSA-LDSTNVETAFQNIL 220
+E + A +F E SA N+ F +
Sbjct: 153 EEGEKLATELACAFYECSACTGEGNITEIFYELC 186
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 173 bits (441), Expect = 4e-55
Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
+ ++G G GKS L +F F E + + + VD + + ++ DTA
Sbjct: 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTA 77
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
+ R Y A L+VY + ++++ +L L HA
Sbjct: 78 DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA--------------- 121
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
++I +L+GNK D+ R V
Sbjct: 122 ---------------------------------KETQRSIPALLLGNKLDMAQYRQVTKA 148
Query: 189 EAKTFAERNNLSFIETSA-LDSTNVETAFQNIL 220
E A R F E SA LD +V+ F +
Sbjct: 149 EGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 175 bits (445), Expect = 3e-52
Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 63/227 (27%)
Query: 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--------QV 55
+ KV LIGD GK++LL + F+ + T G+ T+
Sbjct: 34 EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93
Query: 56 DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 115
+ K WD GQE A + + +L+ D T N WLR + +
Sbjct: 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG- 149
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
+++V N
Sbjct: 150 ---------------------------------------------------KSPVIVVMN 158
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
K D + + F S + VE+ +++ +A
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 156 bits (398), Expect = 9e-49
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 60/211 (28%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
KV ++G+ GKS L+ R+ + + +S G F + I VD ++ I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
+ + + V+ + ++++ V + L +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN----------------- 116
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR--HLRAVPADE 189
+ ++LVG + + + R +
Sbjct: 117 ---------------------------------ASEVPMVLVGTQDAISAANPRVIDDSR 143
Query: 190 AKTFAER-NNLSFIETSALDSTNVETAFQNI 219
A+ + ++ ET A NVE FQ++
Sbjct: 144 ARKLSTDLKRCTYYETCATYGLNVERVFQDV 174
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 155 bits (393), Expect = 4e-48
Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 58/212 (27%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
++ ++GD+ GKS+L+ RF + + T ++ + + VD +T I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
+ + A + V+ + +++ V R +
Sbjct: 65 PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQ---------------------- 97
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG--NKSDLRHLRAVPAD 188
L LR + + LVG ++ R V
Sbjct: 98 --------------------------LSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 131
Query: 189 EAKTF-AERNNLSFIETSALDSTNVETAFQNI 219
A+ A+ S+ ET A NV+ FQ +
Sbjct: 132 RARALXADMKRCSYYETXATYGLNVDRVFQEV 163
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 140 bits (354), Expect = 6e-42
Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 55/222 (24%)
Query: 4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
+ + K+V++GD VGK+ LL F++ E T+ F+ ++ +
Sbjct: 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILH 74
Query: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
+WDTAGQE Y + Y + LL + + +++N+
Sbjct: 75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS-------------------- 114
Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH-- 181
+W E++ + D +LVG K DLR
Sbjct: 115 ------------------------------TKWEPEIKHYID-TAKTVLVGLKVDLRKDG 143
Query: 182 LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
V E ++ +++IE S++ + F+ +
Sbjct: 144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 130 bits (328), Expect = 3e-38
Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 63/222 (28%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V +GD VGK+ LL +T N F + T+ F+ ++ V+ T+ +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y + YRGA +L + + +YENV
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVS---------------------------- 99
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
++W+ EL+ +A + I+LVG K DLR
Sbjct: 100 ----------------------KKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPG 136
Query: 182 LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
+ + + + ++IE S+ NV+ F +
Sbjct: 137 AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 129 bits (326), Expect = 1e-37
Identities = 51/224 (22%), Positives = 78/224 (34%), Gaps = 65/224 (29%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
KVVL+GD G GK++LL F F T+ + +QV K + IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y + +Y A LL +D+ +++N+
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIF---------------------------- 125
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
RW E+ + + I++VG K+DLR
Sbjct: 126 ----------------------NRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRR 162
Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
L V + A ++++E SA NV FQ
Sbjct: 163 NGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 125 bits (316), Expect = 3e-36
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 63/216 (29%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V +GD VGK+ +L +T N+F + T+ F+ ++ VD + + +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y LR L
Sbjct: 69 DYSR------------------------------LRPL---------------------S 77
Query: 132 YRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGNKSDLR--------HL 182
YRGA +L + + +YENV ++W+ ELR A N+ I+LVG K DLR H
Sbjct: 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHT 136
Query: 183 RAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQ 217
+ + + + ++ ++IE S+ NV+ F
Sbjct: 137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 124 bits (314), Expect = 7e-36
Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 65/223 (29%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F+++EF T+ + I+VD K ++ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
Y + Y L+ + + + EN+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIP----------------------------- 116
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
E+W+ E++ N+ I+LV NK DLR
Sbjct: 117 ---------------------EKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARM 154
Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
V D+ + A R ++E SA V F+ A
Sbjct: 155 KQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 123 bits (311), Expect = 1e-35
Identities = 52/227 (22%), Positives = 82/227 (36%), Gaps = 65/227 (28%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTA
Sbjct: 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
GQE Y + Y L+ + I + EN+
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP------------------------- 116
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH------- 181
E+W E++ N+ I+LVGNK DLR
Sbjct: 117 -------------------------EKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRE 150
Query: 182 -----LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
V ++E + A R + ++E SA V F+ A
Sbjct: 151 LAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 121 bits (306), Expect = 1e-34
Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 65/224 (29%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K V++GD VGK+ LL +T N F E T+ + + ++ VD K + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y + Y L+ + + ++ENV
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVR---------------------------- 121
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
+W E+R H N I+LVG K DLR
Sbjct: 122 ----------------------AKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKE 158
Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
L + + A+ + ++E SAL ++T F + A
Sbjct: 159 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 121 bits (305), Expect = 4e-34
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 45/232 (19%)
Query: 18 GDSGVGKSNLLSRFTR---NEFNLESKSTIG-VEFATRSIQVDQ--------------KT 59
G G+GKS L +RF R +EF+L+ S + +F R + D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 60 IKAQIW-------DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 112
K I D Q Y + A L E +
Sbjct: 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA---------------EKLMY 139
Query: 113 ADQNIVIMLVGPPSLLRRYYRGAV-GALLVYDIAKH--LTYENVERWLRELRDHADQ-NI 168
+ + + + V G LL D+++ +++ +++ L + +
Sbjct: 140 FCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKK 199
Query: 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
I++V K D R + + + NL +ETSA + NV+ AF ++
Sbjct: 200 PIVVVLTKCDEGVERYIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLV 250
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 119 bits (301), Expect = 6e-34
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 66/229 (28%)
Query: 3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA 62
+ + K+V++GDS GK+ LL F ++ F T+ + S ++D + I+
Sbjct: 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIEL 78
Query: 63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 122
+WDT+G Y + Y + L+ +DI++ T ++V
Sbjct: 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL------------------- 119
Query: 123 GPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH- 181
++W E+++ N ++LVG KSDLR
Sbjct: 120 -------------------------------KKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147
Query: 182 -----------LRAVPADEAKTFAER-NNLSFIETSALDSTN-VETAFQ 217
V D+ A++ ++IE SAL S N V F
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 117 bits (295), Expect = 2e-33
Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 65/223 (29%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N F E T+ + + ++ VD K + +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
Y + Y +L+ + + ++ENV
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVR----------------------------- 96
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
+W E+R H N I+LVG K DLR
Sbjct: 97 ---------------------AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEK 134
Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
L + + A+ + ++E SAL ++T F + A
Sbjct: 135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 117 bits (296), Expect = 3e-33
Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 65/223 (29%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K VL+GD VGK++L+ +T N + E T + + + VD + ++ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
+ + Y LL + + +++NV
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVS----------------------------- 111
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
E+W+ E+R H I+LVG +SDLR
Sbjct: 112 ---------------------EKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKC 149
Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
+ VP + AK AE S+IE SAL N++ F + A
Sbjct: 150 KEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 116 bits (292), Expect = 7e-33
Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 66/224 (29%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K+V++GDS GK+ LL F ++ F T+ + S ++D + I+ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
Y + Y + L+ +DI++ T ++V
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVL----------------------------- 98
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
++W E+++ N ++LVG KSDLR
Sbjct: 99 ---------------------KKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNH 136
Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTN-VETAFQNILTA 222
V D+ A++ ++IE SAL S N V F A
Sbjct: 137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 114 bits (287), Expect = 4e-32
Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 65/235 (27%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
+ K V++GD VGK+ LL + + F E T+ + S+ V K
Sbjct: 8 SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY 66
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
++DTAGQE Y + Y L+ + + +++NV+
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEE--------------- 111
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
W+ EL+++A N+ +L+G + DLR
Sbjct: 112 -----------------------------------WVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 181 H------------LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
+ + ++ + A+ ++E SAL ++T F + A
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 114 bits (287), Expect = 7e-32
Identities = 35/225 (15%), Positives = 79/225 (35%), Gaps = 66/225 (29%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
K+VL+GD GK+ +L ++ + T+ + ++ +++ ++ +WDT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
Y + Y + LL +DI++ T ++ +
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKK-------------------------- 120
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
W E+ D+ + ++L+G K+DLR
Sbjct: 121 ------------------------WRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSH 155
Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDS-TNVETAFQNILTA 222
+ ++ A++ ++E SA S ++ + F+
Sbjct: 156 QKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 78.9 bits (194), Expect = 1e-17
Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 65/222 (29%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
L K V++GD VGK+ LL +T N F E T+ + + ++ VD K + +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 211
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
G E Y + Y L+ + + ++ +V
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVR------------------------- 246
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH------- 181
+W E+R H N I+LVG K DLR
Sbjct: 247 -------------------------AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK 280
Query: 182 -----LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQ 217
L + + A+ + ++E SAL ++T F
Sbjct: 281 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 65.2 bits (159), Expect = 3e-13
Identities = 40/218 (18%), Positives = 63/218 (28%), Gaps = 60/218 (27%)
Query: 12 FKVVLIGDSGVGKSNLL----------SRFTRNEFNLESKSTIGVEFATRSI-QVDQKTI 60
FK+V G GK+ L + E + T+ +F I +V
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
+ ++ GQ Y A RG G + V D A + N E R +R
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMR---------- 123
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
EN+ + L D + I++ NK DL
Sbjct: 124 ------------------------------ENLAEYGLTLDD-----VPIVIQVNKRDLP 148
Query: 181 HLRAVPADE-AKTFAERNNLSFIETSALDSTNVETAFQ 217
A+P + +E A + V +
Sbjct: 149 D--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 54.2 bits (130), Expect = 2e-09
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLES---KSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
+++L+G GKS++ E+ +ST + S + QIWD G
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN---SSFVNFQIWDFPG 78
Query: 70 QERYRAITS---AYYRGAVGALLVYDIAKHLT--YENVERWLRELRDHADQNIVIMLV 122
Q + T +RG + V D + + + + +
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 51.5 bits (124), Expect = 2e-08
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 8 YDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTI 60
+ +F +++++G GK+ +L + E + TIG VE V+ K I
Sbjct: 21 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNI 73
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
+WD GQ++ R + Y++ G + V D + L+++ + ++
Sbjct: 74 CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133
Query: 121 LV 122
LV
Sbjct: 134 LV 135
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 50.3 bits (121), Expect = 5e-08
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
++ L+G GK+ ++ +FN + T+G + ++ + + ++WD G
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR------KITKGNVTIKLWDIGG 76
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
Q R+R++ Y RG + + D
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVD 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 50.3 bits (121), Expect = 5e-08
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
+++++G G GK+ +L R E +K TIG VE + K +K +WD G
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE------TLSYKNLKLNVWDLGG 71
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
Q R YY + V D
Sbjct: 72 QTSIRPYWRCYYADTAAVIFVVD 94
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 49.1 bits (118), Expect = 1e-07
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
+++++G G GK+ +L R E + TIG VE V K +K Q+WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVE------TVTYKNLKFQVWDLGG 60
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
R YY + V D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVD 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 49.1 bits (118), Expect = 1e-07
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAGQ 70
+++++G GK+ +L + E + TIG VE V+ K I +WD GQ
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNISFTVWDVGGQ 54
Query: 71 ERYRAITSAYYRGAVGALLVYD 92
++ R + Y++ G + V D
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVD 76
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 50.4 bits (120), Expect = 1e-07
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESK---STIGVEFATRSIQVDQKTIKAQIWDTAG 69
K++L+G SG GKS++ S N +++ +TI VE + + +WD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 61
Query: 70 QERYRAIT-----SAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
Q+ + ++ + V+D+ +++E + + L
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKAL 106
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 49.2 bits (118), Expect = 1e-07
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
KV+++G GK+ +L +F+ NE + TIG VE ++ + +WD G
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 69
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
QE R+ + YY ++V D
Sbjct: 70 QESLRSSWNTYYTNTEFVIVVVD 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 48.8 bits (117), Expect = 1e-07
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
KV+++G GK+ +L +F+ NE + TIG VE ++ + +WD G
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 74
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
QE R+ + YY ++V D
Sbjct: 75 QESLRSSWNTYYTNTEFVIVVVD 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 48.8 bits (117), Expect = 1e-07
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
+V+++G GK+++L R + + T+G +E + K I ++WD G
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLE------TLQYKNISFEVWDLGG 75
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
Q R Y+ + V D
Sbjct: 76 QTGVRPYWRCYFSDTDAVIYVVD 98
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 48.8 bits (117), Expect = 2e-07
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
+++++G GK+ +L +F + + T+G ++ ++ + K IWD G
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK------TLEHRGFKLNIWDVGG 71
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
Q+ R+ Y+ G + V D
Sbjct: 72 QKSLRSYWRNYFESTDGLIWVVD 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 48.0 bits (115), Expect = 3e-07
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIG--VEFATRSIQVDQKTIKAQIWDTA 68
V+ +G GK+ ++++ + ++ TIG +E + ++ ++D +
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMS 75
Query: 69 GQERYRAITSAYYRGAVGALLVYD 92
GQ RYR + YY+ + V D
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVID 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 47.4 bits (113), Expect = 7e-07
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
V+ +G GK+ L R ++ +++++I A + + + + D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHES 66
Query: 73 YRA-ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 112
R + + A + V D A +R ++++ +
Sbjct: 67 LRFQLLDRFKSSARAVVFVVDSA------AFQREVKDVAEF 101
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 46.8 bits (112), Expect = 7e-07
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
+++L+G GK+ LL + + + T G ++ V + K +WD G
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIK------SVQSQGFKLNVWDIGG 69
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
Q + R +Y+ + V D
Sbjct: 70 QRKIRPYWRSYFENTDILIYVID 92
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 44.3 bits (104), Expect = 1e-05
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT--IKAQIWDTAGQE 71
V+L+G GKS++ N++ T+ +E +T + ++ + I + + GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFH---NMQPLDTLYLE-STSNPSLEHFSTLIDLAVMELPGQL 57
Query: 72 RYRA---ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
Y + ++ + V D Y N L + ++A +
Sbjct: 58 NYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKV 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 44.1 bits (104), Expect = 1e-05
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQK 58
R +++++G GK+ +L + E + TIG VE V+ K
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYK 207
Query: 59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
I +WD GQ++ R + Y++ G + V D
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 42.8 bits (101), Expect = 2e-05
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73
+++ G GK++LL+ T + + + D + D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68
Query: 74 RAITSAYYRGAVGAL--LVYDI 93
R S Y + + L++ +
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMV 90
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 42.8 bits (101), Expect = 2e-05
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
+++ G GK++LL+ T + + + + D + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-PLSA----ADYDGSGVTLVDFPGHVK 103
Query: 73 YRAITSAYYRGAVGAL--LVYDI 93
R S Y + + L++ +
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMV 126
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 43.0 bits (101), Expect = 4e-05
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
+++++G GK+ +L + + + + T+G VE V K +K +WD G
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE------TVTYKNVKFNVWDVGG 375
Query: 70 QERYRAITSAYYRGAVGALLVYD 92
Q++ R + YY G G + V D
Sbjct: 376 QDKIRPLWRHYYTGTQGLIFVVD 398
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 41.4 bits (98), Expect = 6e-05
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
K++ +G GK+ LL + + T + + + IK +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQ 79
Query: 73 YRAITSAYYRGAVGALLVYD 92
R + Y+ G + + D
Sbjct: 80 ARRLWKDYFPEVNGIVFLVD 99
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 40.7 bits (96), Expect = 1e-04
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAGQ 70
K+V +G GK+ LL + + T+ E ++ + +D G
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE------ELTIAGMTFTTFDLGGH 79
Query: 71 ERYRAITSAYYRGAVGALLVYD 92
+ R + Y G + + D
Sbjct: 80 IQARRVWKNYLPAINGIVFLVD 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 1e-04
Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 39/179 (21%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE-FATRSIQVDQKTIKAQIW 65
E D++ + +S R + L SK V+ F ++++ K + + I
Sbjct: 50 EIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI- 98
Query: 66 DTAGQERYRA---ITSAY--YR----GAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
+ R +T Y R Y++++ Y + + L ELR +N
Sbjct: 99 ----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KN 152
Query: 117 IVI--ML-VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172
++I +L G + A+ L Y + + + + WL ++ + ++ ML
Sbjct: 153 VLIDGVLGSGKTWV-------ALDVCLSYKVQCKMDF-KI-FWLNLKNCNSPETVLEML 202
Score = 38.3 bits (88), Expect = 0.002
Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 84/238 (35%)
Query: 3 TREDEYDYLFK----------VVLIGDSGVGKSNLLSRFTRNEFNLESKS-------TIG 45
+R Y L + V++ G G GK+ + + + ++ K +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLK 190
Query: 46 VEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105
+ ++ + + QI D R ++ R +++
Sbjct: 191 NCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLR----------------IHSIQAE 233
Query: 106 LRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH-- 163
LR L L + Y LLV NV + +
Sbjct: 234 LRRL-----------------LKSKPYE---NCLLVLL--------NV--QNAKAWNAFN 263
Query: 164 ---------ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS----FIETSALD 208
+ + L + H+ + T S +++ D
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATT--THISLD--HHSMTLTPDEVKSLLLKYLDCRPQD 317
Score = 26.7 bits (58), Expect = 8.8
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG----PPSLLRRYYRGAVGALLVYD 143
+ IA+ + + + W + D+ I+ P+ R+ + L V+
Sbjct: 328 RRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFP 382
Query: 144 IAKHLTYENVER-WLRELRDHADQNIVIMLVGNKSDL 179
+ H+ + W ++ +V L S +
Sbjct: 383 PSAHIPTILLSLIWF-DVIKSDVMVVVNKLH-KYSLV 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 58/171 (33%)
Query: 27 LLSRFTRNEFNLESKS--TIGVEFATRS---IQVDQKTIKA--QIWDTAGQERYRAITSA 79
L+ F + LE + + + + ++ IK A + + SA
Sbjct: 87 CLTEFENC-Y-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 80 YYRGAV-GALLVYDI-----AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY-- 131
+R G + I N + + ELRD Y
Sbjct: 145 LFRAVGEGNAQLVAIFGGQG-------NTDDYFEELRD------------------LYQT 179
Query: 132 YRGAVGALLVYDIAKHLT------------YE---NVERWLRELRDHADQN 167
Y VG L+ A+ L+ + N+ WL + D++
Sbjct: 180 YHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 35.0 bits (80), Expect = 0.016
Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 38/169 (22%)
Query: 49 ATRSIQVDQKTIK------AQIWDTAGQ--ERYRAITSAYYRGAVGA--------LLVYD 92
+TR + + +++ + A Q E++ I G L+
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV--- 61
Query: 93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRG----AVGALLVYDIAKHL 148
K L Y V + + ++ + + Y G A+ A L+ +
Sbjct: 62 -GKFLGY--VSSLVEPSKVGQFDQVLNLCLT--EFENCYLEGNDIHALAAKLLQENDT-- 114
Query: 149 TYENVERWLR---ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA 194
T + ++ R A + + S L RAV A+ A
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDK---KSNSAL--FRAVGEGNAQLVA 158
Score = 31.6 bits (71), Expect = 0.26
Identities = 34/201 (16%), Positives = 52/201 (25%), Gaps = 96/201 (47%)
Query: 41 KSTIGVEFATRSIQV----DQKTI-----KAQIWDTAGQERYRAIT----SAYYRGAVGA 87
+S G+ R + DQ I K + R+ + S A
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-----SNRFLPVASPFHSHLLVPASDL 438
Query: 88 LL------------------VYDIAKHLTYENVERWLRELRDHADQNIVIMLV------- 122
+ VYD T++ + LR L + IV ++
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYD-----TFDGSD--LRVLSGSISERIVDCIIRLPVKWE 491
Query: 123 -------------GPPSLLRRYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNI 168
GP G L V LT+ N + +R
Sbjct: 492 TTTQFKATHILDFGP---------GGASGLGV------LTHRNKDGTGVR---------- 526
Query: 169 VIMLVGNKSDLRHLRAVPADE 189
VI + G L P D+
Sbjct: 527 VI-VAG------TLDINPDDD 540
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 37.4 bits (86), Expect = 0.002
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 6/117 (5%)
Query: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DQKTIKAQIWD 66
+ V + G++G GKS+ ++ E + GV T WD
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126
Query: 67 TAGQERYRAITSAYYRGAV---GALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
G Y + A +N + + + +
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK-KNDIDIAKAISMMKKEFYFVR 182
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 37.1 bits (87), Expect = 0.003
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN 198
L + D+ + + H + V NK D A + A+
Sbjct: 317 LYLLDLGTERLDDELTEIRELKAAHPAAKFLT--VANKLD---RAANADALIRAIADGTG 371
Query: 199 LSFIETSALDSTNVE 213
I SAL+ ++
Sbjct: 372 TEVIGISALNGDGID 386
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 36.0 bits (84), Expect = 0.003
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN 198
L + D + E W E + I +V NK+D+ E +E N
Sbjct: 88 LFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRNKADI-------TGETLGMSEVNG 139
Query: 199 LSFIETSALDSTNVE 213
+ I SA V+
Sbjct: 140 HALIRLSARTGEGVD 154
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 35.4 bits (81), Expect = 0.006
Identities = 31/175 (17%), Positives = 71/175 (40%), Gaps = 12/175 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA--QIWDTAGQ 70
K+++ G+ GVGK+ L+ + +E + F T ++ + + +I T G+
Sbjct: 2 KIIITGEPGVGKTTLVKKI------VERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK 55
Query: 71 ERYRAITSAYYRGAVGALLVY-DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
++ + + VG+ V + L +ER RE + + I+I +G L
Sbjct: 56 KKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS 115
Query: 130 RYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
+ +R V ++ + +V ++E+R ++ + N+ +
Sbjct: 116 KKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 34.0 bits (78), Expect = 0.021
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 99 YENVERWLRELRDHADQN--IVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW 156
++ ER L+E + +++ +V S L R Y + Y A+ + E +
Sbjct: 115 VDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL 174
Query: 157 LRE 159
+R+
Sbjct: 175 MRK 177
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 34.2 bits (79), Expect = 0.026
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN 197
+LV D + YE + + ++ I ++V NK D+ L + + R
Sbjct: 117 GILVTD-SAPTPYE--DDVVNLFKE---MEIPFVVVVNKIDV--LGEKAEELKGLYESRY 168
Query: 198 NLSFIETSALDSTNVETAFQNIL 220
+ SAL + + I
Sbjct: 169 EAKVLLVSALQKKGFDDIGKTIS 191
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 34.1 bits (78), Expect = 0.030
Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 59/207 (28%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAGQ 70
VV+ G VGKS LL T + + S F TR I V + + QI DT G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASY-----PFTTRGINVGQFEDGYFRYQIIDTPG- 223
Query: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA--DQNIVIMLVGPPSLL 128
L D ++N + ++L
Sbjct: 224 --------------------------------------LLDRPISERNEIEKQ----AIL 241
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ--NIVIMLVGNKSDLRHLRAVP 186
Y G + + ++D ++H + +E + + + ++ ++V NK D+
Sbjct: 242 ALRYLGNL-IIYIFDPSEHCGFP-LEEQIHLFEEVHGEFKDLPFLVVINKIDV--ADEEN 297
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVE 213
+ F + L+ I+ SAL T ++
Sbjct: 298 IKRLEKFVKEKGLNPIKISALKGTGID 324
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 32.4 bits (73), Expect = 0.091
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 4 REDEYDYLFK-------VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD 56
RE+E L + +L+G VGKS+LL F + I ++ +
Sbjct: 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE------RPGILIDCRELYAERG 70
Query: 57 QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
T + I + + ++ ++ + + L+ V R L +L + +
Sbjct: 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEF 130
Query: 117 IVI 119
IV
Sbjct: 131 IVA 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 31.7 bits (72), Expect = 0.14
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 13 KVVLIGDSGVGKSNLL-SRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ---IWDTA 68
V+++G GVGKS+ + S + +T+ I DT
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVV--RVSPFQAE---GLRPVMVSRTMGGFTINIIDTP 92
Query: 69 G 69
G
Sbjct: 93 G 93
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.1 bits (70), Expect = 0.23
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 13 KVVLIGDSGVGKSNLLSRFT-RNEFNLESKSTIGVEFATRSIQVDQKTIKAQ---IWDTA 68
++VL+G +G GKS + R F S + T+ + + K + DT
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVF----HSGTAAKSITKKCEKRSSSWKETELVVVDTP 86
Query: 69 G 69
G
Sbjct: 87 G 87
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 0.23
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 12 FKVVLIGDSGVGKS----NLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
F ++ +G++G+GKS L + E ++ + ++ T +Q +K I T
Sbjct: 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102
Query: 68 AG 69
G
Sbjct: 103 VG 104
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 30.4 bits (68), Expect = 0.33
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 22/128 (17%)
Query: 12 FKVVLIGDSGVGKSNLLSR-FTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ---IWDT 67
+++L+G +G GKS + + F S +G TR+ + + DT
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRF----FSRLGATSVTRACTTGSRRWDKCHVEVVDT 77
Query: 68 AG---------QERYRAITSAYYRGAVGA-LLVYDIAKHLTYENVERWLRELRD----HA 113
Y A G L+ ++ +R++RD
Sbjct: 78 PDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDV 137
Query: 114 DQNIVIML 121
+ +VI+
Sbjct: 138 LKWMVIVF 145
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 30.7 bits (69), Expect = 0.33
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 13/63 (20%)
Query: 13 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI---KAQIWD 66
++++G GVGKS N + + ++ I D
Sbjct: 41 TILVMGKGGVGKSSTVNSI--IGERVV--SISPFQSE---GPRPVMVSRSRAGFTLNIID 93
Query: 67 TAG 69
T G
Sbjct: 94 TPG 96
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 30.4 bits (68), Expect = 0.34
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 12 FKVVLIGDSGVGKSNLLSR-FTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ---IWDT 67
+++L+G +G GKS + + F +S +G + T++ Q + + I DT
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAF----ESKLGSQTLTKTCSKSQGSWGNREIVIIDT 78
Query: 68 AG 69
Sbjct: 79 PD 80
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 31.0 bits (70), Expect = 0.36
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVG-----PPSLLRRYYRGAVGALLVYDIA 145
D KH+ + WL +R + + VG + L Y G + ++D
Sbjct: 233 LDAVKHIKFSFFPDWLSYVRSQTGKP--LFTVGEYWSYDINKLHNYIMKTNGTMSLFDAP 290
Query: 146 KH 147
H
Sbjct: 291 LH 292
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 30.0 bits (68), Expect = 0.41
Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 55/222 (24%)
Query: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDQKTIKAQIWDT 67
+ ++ G S VGKS L+ R T + + GV TR I + I D
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GV---TRKIIEIEWKNHKII----DM 51
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI-----VIMLV 122
G + L E ER E+ + N +++V
Sbjct: 52 PG---------------------FGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVV 90
Query: 123 GPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSD-LRH 181
+ R + D ++LREL +I ++ NK D +++
Sbjct: 91 DGKAAPEIIKRWEKRGEIPID-------VEFYQFLREL------DIPTIVAVNKLDKIKN 137
Query: 182 LRAVPADEAKTFAE---RNNLSFIETSALDSTNVETAFQNIL 220
++ V A+ F + FI SA N+E I
Sbjct: 138 VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.2 bits (67), Expect = 0.47
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 12 FKVVLIGDSGVGKS---------NLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA 62
F ++++G+SG+GKS +L + + + T+ +E +T I+ ++
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78
Query: 63 QIWDTAGQER 72
+ DT G
Sbjct: 79 TVVDTPGYGD 88
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 29.8 bits (68), Expect = 0.67
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN 198
LL D A T + +++ ++LV NK DL N
Sbjct: 308 LLTIDAATGWT-TGDQEIYEQVKHRP-----LILVMNKIDL----VEKQLITSLEYPENI 357
Query: 199 LSFIETSALDSTNVE 213
+ T+A ++
Sbjct: 358 TQIVHTAAAQKQGID 372
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.4 bits (65), Expect = 0.78
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 12 FKVVLIGDSGVGKSNL--------LSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
F ++++G+SG+GKS L L + K T+ VE + I+ +
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 64 IWDTAG 69
I DT G
Sbjct: 69 IVDTPG 74
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 29.3 bits (65), Expect = 0.83
Identities = 21/154 (13%), Positives = 57/154 (37%), Gaps = 11/154 (7%)
Query: 17 IGDSGVGK-SNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA 75
IG G G+ + + ++ + VE + I ++ + + +
Sbjct: 59 IG-GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 76 ITSAYYRGAVGALL---VYD--IAKHLTY--ENVERWLRELRDHADQN--IVIMLVGPPS 126
TS+ Y+ + +D + Y +++ L+ N ++I++V S
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 177
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLREL 160
+ ++ D+ +++T +++ + L L
Sbjct: 178 GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 29.3 bits (66), Expect = 1.1
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 125 PSLLRRYYRGAVGAL---LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
L +G + A + T N+ + +RD++D ++ V + +D+R
Sbjct: 23 RELFEDMRKGGLTAANCTVSVWEGFQATVNNITASNKLIRDNSDL---VIPVRSTADIRK 79
Query: 182 LRA 184
+
Sbjct: 80 AKE 82
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.8 bits (65), Expect = 1.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLE 39
+ G SGVGKS+LL+ + +
Sbjct: 218 SIFAGQSGVGKSSLLNALLGLQNEIL 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.6 bits (63), Expect = 1.4
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 9/125 (7%)
Query: 14 VVLIGDSGVGKSNL---LSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
++L G S GKS + L + ++ + + +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 71 ERYRAITSAYYRGAV-----GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
+RA+ A+ G V GA ++ D L + R D V +
Sbjct: 66 PEFRALEGAWAEGVVAMARAGARIIID-DVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124
Query: 126 SLLRR 130
R
Sbjct: 125 VAEGR 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 28.6 bits (65), Expect = 1.4
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 154 ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIET---SALDST 210
+ + + I+LVGNK D E A L E SALD
Sbjct: 104 DELVARALKPLVGKVPILLVGNKLDA-----AKYPEEAMKAYHELLPEAEPRMLSALDER 158
Query: 211 NVETAFQNIL 220
V ++L
Sbjct: 159 QVAELKADLL 168
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 28.7 bits (65), Expect = 1.5
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN 198
L V D + L E + L +++ ++V NK D + +E +
Sbjct: 328 LFVLDASSPLD-EEDRKILERIKNKR-----YLVVINKVD---VVEKINEEEIKNKLGTD 378
Query: 199 LSFIETSALDSTNVE 213
++ SAL +E
Sbjct: 379 RHMVKISALKGEGLE 393
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 28.7 bits (65), Expect = 1.6
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 13 KVVLIGDSGVGKS---NLLSRF 31
V +G SG GKS NL+ RF
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRF 390
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.7 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 13 KVVLIGDSGVGKS---NLLSRF 31
V L+G SG GKS NL +RF
Sbjct: 371 TVALVGRSGSGKSTIANLFTRF 392
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.1 bits (62), Expect = 2.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 4 REDEYDYLFK-----VVLIGDSGVGKSNLLSRFTRN 34
RE E + L +++G GKS+++
Sbjct: 18 REKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINE 53
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 28.1 bits (62), Expect = 2.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 15 VLIGDSGVGKSNLL 28
++IG +G GKS+LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 28.4 bits (64), Expect = 2.3
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 100 ENVERWLRELRDHADQNIVIMLVG----PPSLLRRYYRG 134
+N W + R ++ + LVG + Y++
Sbjct: 210 KNFT-WWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKY 247
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 27.9 bits (63), Expect = 2.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 13 KVVLIGDSGVGKSNLL 28
VV+IG SG GKS L
Sbjct: 52 VVVVIGPSGSGKSTFL 67
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 27.9 bits (62), Expect = 2.8
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 91 YDIAKHLTYENVERWLRELRDHADQNIVI---MLVGPPSLLRRYYRGAVGALLVYDIAKH 147
D KH+ Y W+ +R +N+ + Y + V+D+ H
Sbjct: 235 IDAVKHIKYSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLH 294
Query: 148 LTYENV 153
N
Sbjct: 295 YNLYNA 300
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 27.9 bits (62), Expect = 2.8
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 30/121 (24%)
Query: 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVG-----PPSLLRRYYRGAVGALLVYD-- 143
D KH+ + W+R R+ ADQ+ + +VG L Y + ++D
Sbjct: 230 LDAIKHIPFWYTSDWVRHQRNEADQD--LFVVGEYWKDDVGALEFYLDEMNWEMSLFDVP 287
Query: 144 --------------------IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
+ L + + + +H D L +D
Sbjct: 288 LNYNFYRASQQGGSYDMRNILRGSLVEAHPMHAVTFVDNH-DTQPGESLESWVADWFKPL 346
Query: 184 A 184
A
Sbjct: 347 A 347
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 13 KVVLIGDSGVGKS---NLLSRF 31
V L+G SG GKS +L++RF
Sbjct: 371 TVALVGRSGSGKSTIASLITRF 392
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 27.7 bits (62), Expect = 3.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 16 LIGDSGVGKSNLLSRFTRN 34
L SGVGKS LL R
Sbjct: 162 LFAGSGVGKSVLLGMMARY 180
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.5 bits (62), Expect = 3.0
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 13 KVVLIGDSGVGKS---NLLSRF 31
L+G +G GKS LL RF
Sbjct: 48 TCALVGHTGSGKSTIAKLLYRF 69
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.5 bits (62), Expect = 3.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 15 VLIGDSGVGKSNLL 28
+L G SGVGKS++L
Sbjct: 169 ILAGPSGVGKSSIL 182
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 27.5 bits (62), Expect = 3.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 14 VVLIGDSGVGKSNLL 28
+ +IG SG GKS L
Sbjct: 35 ISIIGSSGSGKSTFL 49
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.5 bits (62), Expect = 3.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 15 VLIGDSGVGKSNLL 28
V G SGVGKS+LL
Sbjct: 177 VFAGQSGVGKSSLL 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.5 bits (62), Expect = 3.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 15 VLIGDSGVGKSNLL 28
+ G SGVGKS+LL
Sbjct: 173 TMAGLSGVGKSSLL 186
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 27.6 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 14 VVLIGDSGVGKSNLLSRFTRN 34
++ G +G GK+ L+SRF N
Sbjct: 284 ILATGATGTGKTLLVSRFVEN 304
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 27.6 bits (62), Expect = 3.6
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 16 LIGDSGVGKSNLLSRFTRN 34
+ SGVGKS LL
Sbjct: 76 IFAGSGVGKSTLLGMICNG 94
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.6 bits (61), Expect = 3.7
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA-TRSIQVDQKTIKAQIWDTAGQE 71
V ++G + VGKS ++R + T T + A ++DT G
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
Query: 72 RYRAITS 78
+ +
Sbjct: 224 NHHQMAH 230
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 27.1 bits (61), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 14 VVLIGDSGVGKS---NLLSRF 31
+ G SG GKS +LL RF
Sbjct: 31 IAFAGPSGGGKSTIFSLLERF 51
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.2 bits (61), Expect = 3.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 14 VVLIGDSGVGKSNLLSR 30
+VLIG SGVG+S++ +
Sbjct: 22 LVLIGASGVGRSHIKNA 38
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.1 bits (60), Expect = 4.0
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 4/119 (3%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
++ IG G GKS F ++ + D+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYTKKKEGIVTGM 63
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
++ S Y G ++ +L E W +++ + + P + L +
Sbjct: 64 QFDTAKSILYGGDSVKGVIIS-DTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVK 121
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.5 bits (61), Expect = 4.1
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
++L G G GK+ +++ RN +L I T + + +
Sbjct: 1270 IILCGPPGSGKTMIMNNALRN-SSLYDVVGINFSKDTTTEHI-LSAL 1314
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 27.5 bits (61), Expect = 4.1
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 99 YENVERWLRELRDHADQNIVIMLV----GPPSLLRRYYRG----AVGALLVYDIAKHL-- 148
Y + R ++L HA + + + L + +G +D A ++
Sbjct: 134 YSELVRVTQDLLTHAANHGQAVHLETGQESADHLLEFIEDVNRPNLGIN--FDPA-NMIL 190
Query: 149 -TYENVERWLRELRDH 163
N LR++ +
Sbjct: 191 YGTGNPIEALRKVARY 206
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 27.2 bits (61), Expect = 4.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 13 KVVLIGDSGVGKS---NLLSRF 31
+ L+G SG GKS LL RF
Sbjct: 82 TLALVGPSGAGKSTILRLLFRF 103
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 4.9
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 14 VVLIGDSGVGKSNLLSR 30
+VL+G GVG+ ++ +
Sbjct: 8 LVLLGAHGVGRRHIKNT 24
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange,
lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Length = 221
Score = 27.0 bits (60), Expect = 5.1
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 16/81 (19%)
Query: 83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVY 142
G + LL + + + +E W++ + + G
Sbjct: 116 GGIKGLLSFPFDGTYSTDFIEEWVKIGLP----------------AKAKVKAQHGDAPFA 159
Query: 143 DIAKHLTYENVERWLRELRDH 163
++ H E V L L +
Sbjct: 160 ELCTHCEKEAVNASLGNLLTY 180
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 26.2 bits (58), Expect = 5.6
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 156 WLREL-RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSF 201
+++ + + + +G + H A+ K F + F
Sbjct: 50 LAQKVRAAFPEDKVAV--LGLHTVFEHHEAMTPISLKAFLHEYRIKF 94
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 26.7 bits (59), Expect = 5.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG-VEFATRSIQV---DQKTIKAQIWDTAG 69
++L G VGKS+ ++ +R + + F T+++ V D K K QI DT G
Sbjct: 32 IILSGAPNVGKSSFMNIVSR------ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPG 85
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 26.6 bits (58), Expect = 6.6
Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 31/186 (16%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ--E 71
L+ G GKS L L ++ G + I D
Sbjct: 33 GALVSPGGAGKSMLA-------LQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHH 85
Query: 72 RYRAITSAYYRGAVGAL----LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
R A+ + A+ L+ + L W L+ A+ +++L
Sbjct: 86 RLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVL----DT 141
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVG--NKSDLRHLRA 184
LRR++ A + + + + A I+ + +K
Sbjct: 142 LRRFHIEEENA-----------SGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAG 190
Query: 185 VPADEA 190
+
Sbjct: 191 DQQQAS 196
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 26.7 bits (59), Expect = 6.6
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVG-----PPSLLRRYYRGAVGALLVYDIA 145
D AKH+ + + W++ +R + + V L Y V+D+
Sbjct: 230 IDAAKHIKFSFLRDWVQAVRQATGKE--MFTVAEYWQNNAGKLENYLNKTSFNQSVFDVP 287
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 26.8 bits (59), Expect = 6.6
Identities = 7/33 (21%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
D KH+ Y +++W+ +++ ++++ + VG
Sbjct: 349 LDAVKHIDYRFIDKWMSAVQNSSNRD--VFFVG 379
Score = 26.8 bits (59), Expect = 6.6
Identities = 7/33 (21%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174
D KH+ Y +++W+ +++ ++++ + VG
Sbjct: 349 LDAVKHIDYRFIDKWMSAVQNSSNRD--VFFVG 379
>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia
virus} PDB: 2uxe_A
Length = 137
Score = 26.2 bits (57), Expect = 6.9
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
V N D + + A+ A A+ ER+ + + E+ + +ET F +++
Sbjct: 83 VNNIEDAKRMIAISAKVARDIGERSEIRWEESFTILFRMIETYFDDLMI 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 26.1 bits (58), Expect = 7.8
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 14 VVLIGDSGVGKSNLLSRFTRN 34
+ L G+ G GK+ F
Sbjct: 26 IALTGEPGTGKTIFSLHFIAK 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 26.7 bits (59), Expect = 8.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 54
V + G +G GKS L + R+ LE + GV + + Q
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 26.7 bits (59), Expect = 8.5
Identities = 10/64 (15%), Positives = 20/64 (31%)
Query: 151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST 210
+ V + L D N V+ + + L + + ++ + LD T
Sbjct: 301 DLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDIT 360
Query: 211 NVET 214
T
Sbjct: 361 TPPT 364
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 26.3 bits (59), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 14 VVLIGDSGVGKS---NLLSRF 31
+ ++G SG GKS L+ RF
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRF 58
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 26.2 bits (57), Expect = 9.8
Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
+ + + D+ IV++ +G D + + + ++ + +SFI+
Sbjct: 96 LNSIIEQTPQ--DKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFID 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,405,232
Number of extensions: 203969
Number of successful extensions: 1370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1168
Number of HSP's successfully gapped: 316
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)