BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15626
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
           Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
           From Brucella Melitensis
          Length = 416

 Score = 30.8 bits (68), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 14  YSSVSTLGEAGIVQFRDVSIT---LDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDE 70
           YS V +    G V F  V +      T+F    E RP  LNS MN F    ++   +  +
Sbjct: 320 YSDVGS--TVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQ 377

Query: 71  LERKIRYIEAEINKEG 86
            + ++ Y+  E +  G
Sbjct: 378 TDGEVGYLVMEADGVG 393


>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
           Deinococcus Radiodurans R1 (Target Efi-501256) With
           Bound Phosphate And Sodium
 pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
           Deinococcus Radiodurans R1 (Target Efi-501256) With
           Bound Citrate And Sodium
 pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
           Deinococcus Radiodurans R1 (Target Efi-501256) With
           Bound Magnesium
          Length = 259

 Score = 27.7 bits (60), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 94  TFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELK 139
           + P+AP    + DL+  L  +E  I ++ Q+ +  +  +L+LTE+ 
Sbjct: 22  SMPDAPFDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIA 67


>pdb|3OK8|A Chain A, I-Bar Of Pinkbar
 pdb|3OK8|B Chain B, I-Bar Of Pinkbar
          Length = 222

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 53  RMNAFQRKFVSEVRRCDELERKIRY 77
           R++A  + FVSE +R  ELE K RY
Sbjct: 162 RLHAQMQAFVSESKRAAELEEKRRY 186


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,046,320
Number of Sequences: 62578
Number of extensions: 146143
Number of successful extensions: 448
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 16
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)