Query psy15626
Match_columns 153
No_of_seqs 112 out of 370
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 17:31:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189|consensus 100.0 3.4E-43 7.4E-48 320.9 14.0 132 1-151 10-141 (829)
2 PF01496 V_ATPase_I: V-type AT 99.8 4.5E-20 9.7E-25 171.3 0.0 116 17-151 1-116 (759)
3 PRK05771 V-type ATP synthase s 98.4 3.3E-06 7.2E-11 77.8 11.0 122 1-144 6-128 (646)
4 COG1269 NtpI Archaeal/vacuolar 94.9 0.22 4.7E-06 46.7 9.7 30 1-30 6-35 (660)
5 PF14257 DUF4349: Domain of un 92.9 1.4 2.9E-05 36.3 9.9 94 4-131 98-191 (262)
6 PF10805 DUF2730: Protein of u 89.6 3.7 8.1E-05 29.7 8.3 60 67-139 43-102 (106)
7 PF00261 Tropomyosin: Tropomyo 75.5 19 0.00041 29.3 7.8 56 65-135 112-167 (237)
8 PF05377 FlaC_arch: Flagella a 75.5 20 0.00043 23.4 6.5 42 103-144 8-49 (55)
9 PF05529 Bap31: B-cell recepto 75.1 7.8 0.00017 30.4 5.3 34 103-136 155-188 (192)
10 TIGR02338 gimC_beta prefoldin, 72.2 11 0.00023 27.2 5.0 37 101-137 66-102 (110)
11 PF01920 Prefoldin_2: Prefoldi 69.0 11 0.00023 26.2 4.3 41 99-139 59-99 (106)
12 PF10046 BLOC1_2: Biogenesis o 68.8 8.4 0.00018 27.4 3.8 67 63-134 32-98 (99)
13 PF05377 FlaC_arch: Flagella a 68.2 23 0.00051 23.1 5.4 24 103-126 22-45 (55)
14 PF05529 Bap31: B-cell recepto 64.8 17 0.00036 28.5 5.1 35 98-132 157-191 (192)
15 KOG1003|consensus 62.5 65 0.0014 26.3 8.1 21 65-85 80-100 (205)
16 PF05597 Phasin: Poly(hydroxya 61.0 36 0.00078 25.8 6.1 25 99-123 106-130 (132)
17 COG1382 GimC Prefoldin, chaper 60.5 39 0.00084 25.4 6.1 42 101-142 69-110 (119)
18 cd00632 Prefoldin_beta Prefold 60.5 36 0.00079 24.1 5.8 41 98-138 59-99 (105)
19 smart00338 BRLZ basic region l 59.9 44 0.00095 21.5 5.8 37 102-138 26-62 (65)
20 PRK00295 hypothetical protein; 59.5 11 0.00023 25.3 2.7 18 67-84 6-23 (68)
21 TIGR03185 DNA_S_dndD DNA sulfu 59.1 82 0.0018 29.4 9.3 22 62-83 394-415 (650)
22 PRK02793 phi X174 lysis protei 57.1 10 0.00023 25.7 2.3 19 66-84 8-26 (72)
23 PRK04406 hypothetical protein; 57.0 10 0.00022 26.0 2.3 18 67-84 12-29 (75)
24 PF10198 Ada3: Histone acetylt 56.7 83 0.0018 23.7 7.9 60 78-139 11-70 (131)
25 PRK02119 hypothetical protein; 55.5 11 0.00025 25.6 2.3 19 66-84 9-27 (73)
26 TIGR01834 PHA_synth_III_E poly 54.3 20 0.00044 31.2 4.2 35 97-131 284-318 (320)
27 PF06156 DUF972: Protein of un 53.8 65 0.0014 23.5 6.2 31 110-140 9-39 (107)
28 PF15070 GOLGA2L5: Putative go 53.6 1.2E+02 0.0025 28.8 9.3 74 50-128 34-113 (617)
29 PHA02047 phage lambda Rz1-like 53.4 86 0.0019 22.9 7.1 53 100-152 32-85 (101)
30 PF07106 TBPIP: Tat binding pr 53.0 56 0.0012 25.0 6.1 38 98-135 68-105 (169)
31 PF00170 bZIP_1: bZIP transcri 52.8 59 0.0013 20.9 6.4 36 102-137 26-61 (64)
32 PF13094 CENP-Q: CENP-Q, a CEN 52.5 50 0.0011 25.1 5.8 72 66-147 20-94 (160)
33 TIGR01837 PHA_granule_1 poly(h 51.9 65 0.0014 23.7 6.1 25 98-122 92-116 (118)
34 PRK09413 IS2 repressor TnpA; R 51.8 30 0.00064 25.2 4.2 27 126-152 81-107 (121)
35 PF04977 DivIC: Septum formati 51.4 64 0.0014 20.9 5.5 46 101-146 16-62 (80)
36 KOG0963|consensus 50.6 71 0.0015 30.3 7.3 66 65-137 248-313 (629)
37 PF09902 DUF2129: Uncharacteri 49.9 16 0.00035 24.9 2.4 32 1-32 30-61 (71)
38 COG3352 FlaC Putative archaeal 48.8 1.1E+02 0.0025 24.0 7.1 55 67-129 45-99 (157)
39 TIGR00293 prefoldin, archaeal 48.2 78 0.0017 22.8 6.0 40 105-144 2-41 (126)
40 PF04111 APG6: Autophagy prote 47.5 78 0.0017 27.1 6.7 27 109-135 57-83 (314)
41 PF02183 HALZ: Homeobox associ 46.7 68 0.0015 19.8 4.7 29 114-142 3-31 (45)
42 COG0497 RecN ATPase involved i 45.7 48 0.0011 31.0 5.5 69 66-134 297-374 (557)
43 PRK04406 hypothetical protein; 45.5 96 0.0021 21.1 6.8 25 104-128 6-30 (75)
44 COG2433 Uncharacterized conser 45.2 61 0.0013 30.8 6.0 42 101-142 473-514 (652)
45 PF05119 Terminase_4: Phage te 44.7 94 0.002 21.2 5.7 73 15-118 7-80 (100)
46 PF03670 UPF0184: Uncharacteri 44.7 68 0.0015 22.6 4.9 30 103-132 41-70 (83)
47 PRK13169 DNA replication intia 44.4 1.1E+02 0.0024 22.5 6.2 31 111-141 10-40 (110)
48 PF14182 YgaB: YgaB-like prote 44.3 1.1E+02 0.0024 21.4 6.4 20 63-82 21-40 (79)
49 PRK10884 SH3 domain-containing 43.4 1.8E+02 0.0038 23.6 8.3 19 66-84 93-111 (206)
50 cd04790 HTH_Cfa-like_unk Helix 42.3 1.2E+02 0.0025 23.6 6.5 57 75-132 48-104 (172)
51 COG1269 NtpI Archaeal/vacuolar 42.3 8.1 0.00018 36.4 -0.1 45 18-83 4-48 (660)
52 PF10392 COG5: Golgi transport 42.1 1.1E+02 0.0024 22.6 6.1 47 103-149 80-126 (132)
53 PRK13182 racA polar chromosome 40.8 41 0.00089 26.6 3.7 22 102-123 125-146 (175)
54 PF04912 Dynamitin: Dynamitin 40.6 1.3E+02 0.0027 26.3 7.1 53 62-114 205-258 (388)
55 PRK10869 recombination and rep 40.1 1.8E+02 0.0039 26.8 8.3 26 65-90 295-320 (553)
56 TIGR02338 gimC_beta prefoldin, 39.9 1E+02 0.0022 22.1 5.4 36 101-136 73-108 (110)
57 PF00261 Tropomyosin: Tropomyo 39.9 58 0.0013 26.4 4.6 62 63-132 166-227 (237)
58 cd00890 Prefoldin Prefoldin is 39.8 1.4E+02 0.0029 21.2 6.1 42 105-146 2-43 (129)
59 PF10224 DUF2205: Predicted co 39.2 1.3E+02 0.0029 20.9 6.9 51 102-152 23-73 (80)
60 COG1730 GIM5 Predicted prefold 39.1 1.6E+02 0.0035 22.6 6.7 45 101-145 5-49 (145)
61 PF00038 Filament: Intermediat 38.7 2.2E+02 0.0049 23.4 9.4 42 102-143 255-296 (312)
62 PF10168 Nup88: Nuclear pore c 38.0 2.1E+02 0.0046 27.5 8.6 16 68-83 560-575 (717)
63 COG4467 Regulator of replicati 37.4 1.6E+02 0.0035 21.9 6.1 26 103-128 9-34 (114)
64 PRK02119 hypothetical protein; 37.2 1.3E+02 0.0028 20.3 6.6 12 107-118 7-18 (73)
65 TIGR02209 ftsL_broad cell divi 36.7 1.3E+02 0.0028 20.0 5.8 47 103-149 25-71 (85)
66 COG1579 Zn-ribbon protein, pos 36.6 1.2E+02 0.0026 25.3 6.0 27 60-86 46-72 (239)
67 PF13600 DUF4140: N-terminal d 36.4 1.4E+02 0.0031 20.7 5.6 34 100-133 68-101 (104)
68 PRK11637 AmiB activator; Provi 36.3 2.7E+02 0.0059 24.4 8.6 33 103-135 97-129 (428)
69 PRK05771 V-type ATP synthase s 36.0 2.5E+02 0.0054 26.2 8.6 37 101-137 214-250 (646)
70 PF11471 Sugarporin_N: Maltopo 35.8 1.1E+02 0.0024 20.0 4.6 28 106-133 29-56 (60)
71 cd00584 Prefoldin_alpha Prefol 35.7 1.7E+02 0.0036 21.1 6.1 41 105-145 2-42 (129)
72 PRK01203 prefoldin subunit alp 35.7 1.1E+02 0.0025 23.1 5.3 36 101-136 86-121 (130)
73 PF06103 DUF948: Bacterial pro 35.3 1.4E+02 0.0031 20.2 5.5 35 103-137 27-61 (90)
74 PRK13729 conjugal transfer pil 34.8 93 0.002 28.6 5.4 47 67-131 77-126 (475)
75 PF03915 AIP3: Actin interacti 34.4 2.3E+02 0.0051 25.5 7.9 72 55-136 197-280 (424)
76 PF05278 PEARLI-4: Arabidopsis 34.3 1.2E+02 0.0027 25.8 5.8 47 102-148 207-253 (269)
77 PF12761 End3: Actin cytoskele 34.2 1.4E+02 0.003 24.2 5.9 16 103-118 168-183 (195)
78 PRK02302 hypothetical protein; 34.2 53 0.0012 23.4 3.1 33 1-33 36-68 (89)
79 KOG0804|consensus 33.4 2.3E+02 0.0049 26.1 7.6 42 103-144 369-410 (493)
80 TIGR00634 recN DNA repair prot 33.1 3.1E+02 0.0067 25.1 8.7 24 66-89 301-324 (563)
81 PF10226 DUF2216: Uncharacteri 32.3 2.2E+02 0.0048 23.1 6.6 65 69-144 19-83 (195)
82 PRK02886 hypothetical protein; 32.2 62 0.0013 23.0 3.1 33 1-33 34-66 (87)
83 PRK11637 AmiB activator; Provi 32.1 3.4E+02 0.0075 23.8 8.5 33 103-135 90-122 (428)
84 COG5374 Uncharacterized conser 31.7 1.2E+02 0.0027 24.5 5.1 41 104-144 138-178 (192)
85 COG4467 Regulator of replicati 31.5 1.6E+02 0.0035 21.9 5.3 37 107-143 6-42 (114)
86 PF11083 Streptin-Immun: Lanti 31.4 2.1E+02 0.0045 20.9 5.9 42 99-140 49-90 (99)
87 PF08181 DegQ: DegQ (SacQ) fam 31.2 1.3E+02 0.0029 18.6 5.0 37 102-138 4-40 (46)
88 PF08614 ATG16: Autophagy prot 30.8 1.7E+02 0.0037 22.9 5.8 40 103-142 124-163 (194)
89 PF04210 MtrG: Tetrahydrometha 30.3 48 0.001 22.7 2.2 27 60-86 13-40 (70)
90 cd00632 Prefoldin_beta Prefold 30.2 1.7E+02 0.0038 20.5 5.3 34 102-135 70-103 (105)
91 PF04880 NUDE_C: NUDE protein, 30.1 65 0.0014 25.5 3.2 28 103-131 25-52 (166)
92 PF10158 LOH1CR12: Tumour supp 29.9 2.1E+02 0.0045 21.6 5.9 45 103-147 57-101 (131)
93 PF10359 Fmp27_WPPW: RNA pol I 29.5 1.5E+02 0.0033 26.7 5.9 58 66-129 170-227 (475)
94 PF15290 Syntaphilin: Golgi-lo 29.1 1.4E+02 0.0029 25.9 5.2 19 127-145 118-136 (305)
95 PHA02557 22 prohead core prote 29.1 3.7E+02 0.0079 23.0 8.2 72 69-147 115-186 (271)
96 TIGR01149 mtrG N5-methyltetrah 29.1 48 0.001 22.7 2.0 24 60-83 13-36 (70)
97 TIGR02449 conserved hypothetic 28.9 1.8E+02 0.004 19.4 6.6 40 104-143 2-41 (65)
98 PF02181 FH2: Formin Homology 28.9 3.6E+02 0.0078 22.8 9.6 65 67-139 282-346 (370)
99 cd01111 HTH_MerD Helix-Turn-He 28.8 83 0.0018 22.5 3.4 18 73-91 45-62 (107)
100 PRK01026 tetrahydromethanopter 28.7 48 0.001 23.1 2.0 24 60-83 16-39 (77)
101 COG5415 Predicted integral mem 28.4 2.5E+02 0.0054 23.4 6.4 44 99-142 12-55 (251)
102 PF10481 CENP-F_N: Cenp-F N-te 28.4 2.1E+02 0.0045 24.7 6.2 49 101-149 38-86 (307)
103 PRK01203 prefoldin subunit alp 28.3 2.7E+02 0.0058 21.1 6.3 39 106-144 4-42 (130)
104 PF06160 EzrA: Septation ring 28.0 2.1E+02 0.0046 26.4 6.7 75 67-149 352-430 (560)
105 PRK00888 ftsB cell division pr 27.9 2.3E+02 0.005 20.3 5.9 36 102-137 27-62 (105)
106 COG3323 Uncharacterized protei 27.7 57 0.0012 24.2 2.4 30 1-30 5-34 (109)
107 PF14073 Cep57_CLD: Centrosome 27.5 2.3E+02 0.0049 22.7 5.9 71 66-136 71-147 (178)
108 cd00890 Prefoldin Prefoldin is 27.3 2.3E+02 0.0049 20.0 7.0 36 102-137 87-122 (129)
109 PRK11166 chemotaxis regulator 27.1 1.2E+02 0.0027 24.8 4.5 83 68-150 18-119 (214)
110 cd01106 HTH_TipAL-Mta Helix-Tu 27.0 1.2E+02 0.0025 21.2 3.9 47 82-128 53-99 (103)
111 PF14712 Snapin_Pallidin: Snap 26.8 1.2E+02 0.0027 20.5 3.9 35 102-136 57-91 (92)
112 COG4942 Membrane-bound metallo 26.6 3.6E+02 0.0077 24.5 7.6 33 103-135 74-106 (420)
113 PF12325 TMF_TATA_bd: TATA ele 26.6 2.7E+02 0.0059 20.7 7.2 37 99-135 13-49 (120)
114 PHA02562 46 endonuclease subun 26.3 4.7E+02 0.01 23.3 10.8 29 101-129 298-326 (562)
115 PF04508 Pox_A_type_inc: Viral 26.2 1.2E+02 0.0026 16.4 2.9 18 103-120 2-19 (23)
116 PF14131 DUF4298: Domain of un 26.1 2.3E+02 0.005 19.7 6.1 29 104-132 2-30 (90)
117 PF05384 DegS: Sensor protein 25.9 2.6E+02 0.0056 21.8 5.9 51 66-131 105-155 (159)
118 PF04102 SlyX: SlyX; InterPro 25.7 2E+02 0.0044 18.9 6.9 21 66-86 4-24 (69)
119 KOG4191|consensus 25.6 4E+02 0.0086 24.7 7.7 63 79-146 383-452 (516)
120 PF05600 DUF773: Protein of un 25.6 3.2E+02 0.0069 25.1 7.3 80 50-137 122-212 (507)
121 PF03148 Tektin: Tektin family 25.4 2.2E+02 0.0048 24.9 6.1 43 102-144 324-366 (384)
122 PF12240 Angiomotin_C: Angiomo 25.1 3.9E+02 0.0084 21.9 9.1 72 69-140 23-95 (205)
123 PF02994 Transposase_22: L1 tr 24.5 2.2E+02 0.0047 24.9 5.9 37 101-137 143-179 (370)
124 KOG0245|consensus 24.5 4.3E+02 0.0093 27.1 8.2 78 72-149 360-446 (1221)
125 PRK14127 cell division protein 24.5 2.8E+02 0.0061 20.3 5.6 35 103-137 31-65 (109)
126 PF06156 DUF972: Protein of un 24.4 2.8E+02 0.0061 20.1 6.8 32 103-134 9-40 (107)
127 PF12339 DNAJ_related: DNA-J r 24.4 39 0.00084 25.6 1.0 47 13-86 22-70 (132)
128 PF09789 DUF2353: Uncharacteri 24.3 4.7E+02 0.01 22.8 7.8 76 62-145 32-108 (319)
129 PF08653 DASH_Dam1: DASH compl 24.3 2.1E+02 0.0046 18.7 4.6 28 103-130 6-33 (58)
130 PF10146 zf-C4H2: Zinc finger- 24.1 3.6E+02 0.0078 22.2 6.8 84 61-145 20-103 (230)
131 PF10458 Val_tRNA-synt_C: Valy 24.0 1.1E+02 0.0024 19.9 3.0 57 71-128 9-65 (66)
132 PRK14158 heat shock protein Gr 23.9 3.8E+02 0.0082 21.6 6.7 29 100-128 38-66 (194)
133 PF01978 TrmB: Sugar-specific 23.9 53 0.0011 21.0 1.5 23 8-30 34-56 (68)
134 COG4064 MtrG Tetrahydromethano 23.7 67 0.0014 22.1 2.0 23 61-83 17-39 (75)
135 PF01452 Rota_NSP4: Rotavirus 23.5 2.6E+02 0.0055 22.2 5.4 39 102-140 90-128 (173)
136 PF05667 DUF812: Protein of un 23.5 5.8E+02 0.013 24.0 8.7 46 104-149 344-389 (594)
137 PF04012 PspA_IM30: PspA/IM30 23.5 3.7E+02 0.008 21.1 6.7 40 103-142 99-138 (221)
138 PF10805 DUF2730: Protein of u 23.2 2.6E+02 0.0056 20.0 5.1 20 64-83 47-68 (106)
139 PF01496 V_ATPase_I: V-type AT 23.1 3.3E+02 0.0072 25.9 7.2 43 101-143 228-271 (759)
140 PHA02562 46 endonuclease subun 22.9 1.4E+02 0.0031 26.6 4.6 31 104-134 367-397 (562)
141 PF08614 ATG16: Autophagy prot 22.8 3.7E+02 0.0081 20.9 7.0 40 103-142 117-156 (194)
142 PF08580 KAR9: Yeast cortical 22.7 6.8E+02 0.015 24.0 9.1 74 65-143 56-129 (683)
143 PF10779 XhlA: Haemolysin XhlA 22.5 2.4E+02 0.0052 18.6 5.5 30 103-132 21-50 (71)
144 PF09548 Spore_III_AB: Stage I 22.4 96 0.0021 23.9 2.9 35 57-91 19-53 (170)
145 COG3388 Predicted transcriptio 22.3 3.2E+02 0.0068 19.9 6.3 68 68-135 10-99 (101)
146 PRK10803 tol-pal system protei 22.3 2.3E+02 0.0051 23.4 5.4 32 105-136 57-88 (263)
147 PF14992 TMCO5: TMCO5 family 22.1 1.9E+02 0.004 24.8 4.8 68 65-132 24-93 (280)
148 KOG0994|consensus 22.0 3.7E+02 0.0081 28.1 7.3 22 66-87 1201-1222(1758)
149 PF03980 Nnf1: Nnf1 ; InterPr 21.8 2.9E+02 0.0064 19.4 7.7 67 69-135 30-106 (109)
150 COG3937 Uncharacterized conser 21.5 1.4E+02 0.0031 22.1 3.4 27 98-124 79-105 (108)
151 PF07106 TBPIP: Tat binding pr 21.5 3.7E+02 0.008 20.4 8.1 23 9-31 31-53 (169)
152 PF13093 FTA4: Kinetochore com 21.3 3.9E+02 0.0085 21.6 6.4 38 105-142 138-175 (213)
153 PF07795 DUF1635: Protein of u 21.3 4.5E+02 0.0099 21.6 6.7 58 68-143 3-60 (214)
154 KOG0964|consensus 21.2 6.2E+02 0.013 25.9 8.5 44 102-145 699-742 (1200)
155 PF05149 Flagellar_rod: Parafl 21.2 4.4E+02 0.0094 22.7 6.9 60 62-126 183-243 (289)
156 PF12777 MT: Microtubule-bindi 21.1 4.1E+02 0.0089 22.7 6.8 42 102-143 228-269 (344)
157 PRK03947 prefoldin subunit alp 21.0 3.4E+02 0.0074 19.8 6.7 43 102-144 6-48 (140)
158 PRK10636 putative ABC transpor 20.8 3.6E+02 0.0079 25.1 6.8 68 67-135 564-631 (638)
159 PF01025 GrpE: GrpE; InterPro 20.8 3.4E+02 0.0073 20.2 5.6 36 101-136 17-52 (165)
160 PRK09343 prefoldin subunit bet 20.7 3.5E+02 0.0075 19.8 7.9 41 99-139 68-108 (121)
161 PF07716 bZIP_2: Basic region 20.7 2.2E+02 0.0048 17.6 4.8 27 103-129 26-52 (54)
162 TIGR02054 MerD mercuric resist 20.6 2.9E+02 0.0064 20.2 5.1 63 73-136 48-110 (120)
163 PF04949 Transcrip_act: Transc 20.6 4.3E+02 0.0093 20.8 8.3 59 63-132 56-114 (159)
164 PF03962 Mnd1: Mnd1 family; I 20.2 4.2E+02 0.0091 20.9 6.2 102 10-122 29-130 (188)
165 COG4839 FtsL Protein required 20.2 3.1E+02 0.0068 20.6 5.1 45 102-146 60-104 (120)
166 PRK10697 DNA-binding transcrip 20.2 3.2E+02 0.007 20.3 5.2 26 99-124 78-103 (118)
167 KOG0250|consensus 20.1 6.4E+02 0.014 25.7 8.5 34 103-136 395-428 (1074)
168 TIGR00293 prefoldin, archaeal 20.1 3.4E+02 0.0073 19.4 6.1 34 103-136 87-120 (126)
169 PRK15422 septal ring assembly 20.1 3.2E+02 0.0069 19.1 5.9 40 102-141 25-64 (79)
170 COG4477 EzrA Negative regulato 20.1 5.3E+02 0.011 24.3 7.5 83 50-143 341-423 (570)
No 1
>KOG2189|consensus
Probab=100.00 E-value=3.4e-43 Score=320.87 Aligned_cols=132 Identities=61% Similarity=0.939 Sum_probs=129.7
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHH
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEA 80 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ 80 (153)
|+|||||+|+|+||+||++||++|+||||| ||++|+||||+||+||||||||||+|||+++
T Consensus 10 M~L~Ql~l~~eaAy~~vaeLGelGlvqFrD-------------------LN~~v~afQR~fv~evrRcdemeRklrfl~~ 70 (829)
T KOG2189|consen 10 MCLVQLFLQSEAAYQCVAELGELGLVQFRD-------------------LNPDVSAFQRKFVNEVRRCDEMERKLRFLES 70 (829)
T ss_pred ceeeEEEecHHHHHHHHHHhhccCeeEeee-------------------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy15626 81 EINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHE 151 (153)
Q Consensus 81 ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff~~ 151 (153)
||.|+++++++.++.+++|++++|+++|++++++|+|++++++|.++|++++++|+|+++||++|+.||+.
T Consensus 71 ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~ 141 (829)
T KOG2189|consen 71 EIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFST 141 (829)
T ss_pred HHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 99999999998888888999999999999999999999999999999999999999999999999999985
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=99.77 E-value=4.5e-20 Score=171.27 Aligned_cols=116 Identities=52% Similarity=0.822 Sum_probs=0.0
Q ss_pred HHHhhhccceeeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCC
Q psy15626 17 VSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFP 96 (153)
Q Consensus 17 V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~ 96 (153)
|++||++|+|||+| +|+++++|||+|+++++|||||||+|++++.+|.+.++.++.....+
T Consensus 1 V~eLgelG~VqF~D-------------------ln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~ 61 (759)
T PF01496_consen 1 VNELGELGLVQFRD-------------------LNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKP 61 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhcCCcEEEEE-------------------CccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 78999999999999 99999999999999999999999999999999999999888655566
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy15626 97 NAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHE 151 (153)
Q Consensus 97 ~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff~~ 151 (153)
+.+.+..++++++++++++.++.+++++.+.|.++++++.|.+++|++...++.+
T Consensus 62 ~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~ 116 (759)
T PF01496_consen 62 DAPKPKEIDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIEFLEE 116 (759)
T ss_dssp -------------------------------------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777789999999999999999999999999999999999999999999888765
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=98.37 E-value=3.3e-06 Score=77.77 Aligned_cols=122 Identities=22% Similarity=0.243 Sum_probs=81.4
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeecccccchhhhcccccccccccCCCCC-hhhhchhhhhcchHHHHHHHHHHH
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMN-AFQRKFVSEVRRCDELERKIRYIE 79 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~-~fqR~fv~evrRcdemeRklr~l~ 79 (153)
|..++++.|.+.+.+++..|.++|.||+.| ++...+ ...+.+ .++++++.+.++++.
T Consensus 6 M~kv~l~~~~~~~~~~l~~L~~lg~vhi~~-------------------~~~~~~~~~~~~~---~~~~~~~~~~l~~L~ 63 (646)
T PRK05771 6 MKKVLIVTLKSYKDEVLEALHELGVVHIED-------------------LKEELSNERLRKL---RSLLTKLSEALDKLR 63 (646)
T ss_pred eEEEEEEEEHHHHHHHHHHHHhCCCEEEee-------------------cccccchhHHhHH---HHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999 887765 334444 667888889999998
Q ss_pred HHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 80 AEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 80 ~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
....+.++...............-..+.+..++++++++.++.+..++|+++..++.+....|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 64 SYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88877665432221111111111123445566666666666666666666666666655555543
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=94.89 E-value=0.22 Score=46.70 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=28.9
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeec
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRD 30 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D 30 (153)
|.-+.++.+.+..-+++..|++.|++||+|
T Consensus 6 M~kv~i~~~~~~~~~vi~~L~~~g~~~~~d 35 (660)
T COG1269 6 MKKVSIIGLKSELDPVLAELHDFGLVHLED 35 (660)
T ss_pred heeEEEEeehhhhhHHHHHHHHcCeEEeec
Confidence 778899999999999999999999999999
No 5
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=92.92 E-value=1.4 Score=36.29 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=64.1
Q ss_pred EEEEeccCcHHHHHHHhhhccceeeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHHHHH
Q psy15626 4 CQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 4 ~qL~ip~E~A~~~V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~ 83 (153)
..+=||++.--+.+..|+++|.|.-++ .+.. -..-.|+.-=.|+...+....=+...+.
T Consensus 98 ltiRVP~~~~~~~l~~l~~~g~v~~~~-------------------~~~~--DvT~~y~D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 98 LTIRVPADKFDSFLDELSELGKVTSRN-------------------ISSE--DVTEQYVDLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred EEEEECHHHHHHHHHHHhccCceeeee-------------------cccc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999999988888 4431 2233555555566666665555555565
Q ss_pred HcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 84 KEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 84 k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
|++ +..++.++|.+|.+...+|.++......|..+
T Consensus 157 ka~-------------~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 157 KAK-------------TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred hcC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 533 34577777777777777777666666655544
No 6
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.60 E-value=3.7 Score=29.71 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELK 139 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~ 139 (153)
+.++.++++.-+|..+.- -|+..++.+|+-.+.++..++..++...+.+.+...-|.|..
T Consensus 43 ~~~~~~~Rl~~lE~~l~~-------------LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~ 102 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEH-------------LPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344558888888888753 477889999999999999999999999999999988888864
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.51 E-value=19 Score=29.32 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=36.9
Q ss_pred hcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 65 VRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
-++++++.|+|..++..+.++. .-++..+..+..++.+|..+..++..|.......
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aE---------------eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAE---------------ERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4677788888888888886532 3556666666667777766666666665444433
No 8
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.48 E-value=20 Score=23.43 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
.+..++..+..+.++..++.+..+.+.++...+.....|...
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445556667777777777888888888888888777766543
No 9
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.09 E-value=7.8 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
..+...++++++..+|.....+.+.|+++-..+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555443
No 10
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.24 E-value=11 Score=27.19 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
..-+.+++.+++.++..+..+.+..+.|++++.++..
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888777776644
No 11
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.03 E-value=11 Score=26.17 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=33.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELK 139 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~ 139 (153)
+....+..|++..+.++.++..+......+.+++.++....
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888999999999999999999999998888776543
No 12
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=68.77 E-value=8.4 Score=27.44 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=44.8
Q ss_pred hhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15626 63 SEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLE 134 (153)
Q Consensus 63 ~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~ 134 (153)
....++.+|.+...-+...+...+-.... -.|.-..||++++++.++|.=+.++.+-...|..++..
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~-----l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEE-----LQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777777776666666543321111 12445688888889999998888888888888777654
No 13
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.16 E-value=23 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAI 126 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e 126 (153)
+..++-+.+++++.-++.+-.-|+
T Consensus 22 en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 22 ENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555544444444443
No 14
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.75 E-value=17 Score=28.51 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 98 APNPREIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 98 ~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
.....++.++..++++.+.++..+.+..+.|.+.|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567999999999999999999999999988776
No 15
>KOG1003|consensus
Probab=62.48 E-value=65 Score=26.33 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred hcchHHHHHHHHHHHHHHHHc
Q psy15626 65 VRRCDELERKIRYIEAEINKE 85 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~ 85 (153)
.|.|+++.|+|..+++++...
T Consensus 80 drK~eEVarkL~iiE~dLE~~ 100 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERA 100 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 578999999999999999864
No 16
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=61.02 E-value=36 Score=25.79 Aligned_cols=25 Identities=12% Similarity=0.434 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQ 123 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~ 123 (153)
|+..+|+.|..+|+.|..++..+..
T Consensus 106 Ps~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 106 PSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778999999999999999887754
No 17
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=60.54 E-value=39 Score=25.36 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
..-.++|+++++.++.++.-+....+.+++++.+|.+..+-.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999887665433
No 18
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.46 E-value=36 Score=24.10 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 98 APNPREIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 98 ~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
.+...-+..|+.+++.++.++..+.++.+.+.+.+.++...
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889999999999999999999998888877543
No 19
>smart00338 BRLZ basic region leucin zipper.
Probab=59.95 E-value=44 Score=21.52 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
..+++|+.++..++.+..++......|......|.+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888887777766543
No 20
>PRK00295 hypothetical protein; Provisional
Probab=59.45 E-value=11 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINK 84 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k 84 (153)
|++++|-++.|.+.-|..
T Consensus 6 Ri~~LE~kla~qE~tie~ 23 (68)
T PRK00295 6 RVTELESRQAFQDDTIQA 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888888888776654
No 21
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.05 E-value=82 Score=29.36 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=10.4
Q ss_pred hhhhcchHHHHHHHHHHHHHHH
Q psy15626 62 VSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 62 v~evrRcdemeRklr~l~~ei~ 83 (153)
..-+.+..+++..|.-+..+|.
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555555554
No 22
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.13 E-value=10 Score=25.65 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINK 84 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k 84 (153)
.|++++|-++.|.+.-|..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~ 26 (72)
T PRK02793 8 ARLAELESRLAFQEITIEE 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777777777777766654
No 23
>PRK04406 hypothetical protein; Provisional
Probab=56.97 E-value=10 Score=26.00 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINK 84 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k 84 (153)
|++++|-++.|.+.-|..
T Consensus 12 Ri~~LE~~lAfQE~tIe~ 29 (75)
T PRK04406 12 RINDLECQLAFQEQTIEE 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777666654
No 24
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=56.65 E-value=83 Score=23.69 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=43.5
Q ss_pred HHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15626 78 IEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELK 139 (153)
Q Consensus 78 l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~ 139 (153)
|..++.-.|+-.+. +.+..+...+=|++-++|..+-.+|+.+......-+.++..+.+..
T Consensus 11 lk~EL~~~Gll~~~--d~~d~~~~~eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ 70 (131)
T PF10198_consen 11 LKRELRYIGLLSED--DDPDWQDNREDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEE 70 (131)
T ss_pred HHHHHHHcCCcCCC--CccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667666765222 2233336678899999999999999999998888888877765443
No 25
>PRK02119 hypothetical protein; Provisional
Probab=55.53 E-value=11 Score=25.56 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=12.6
Q ss_pred cchHHHHHHHHHHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINK 84 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k 84 (153)
.|++++|-++.|.+..|..
T Consensus 9 ~Ri~~LE~rla~QE~tie~ 27 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEE 27 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3667777777777666654
No 26
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=54.27 E-value=20 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 97 NAPNPREIIDLENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 97 ~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
+-|+-++||++-.+|..++++++++...+..|+++
T Consensus 284 nlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 284 NLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35778899999999999999999998888777653
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.82 E-value=65 Score=23.50 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15626 110 HLERTESEILELSQNAINLKSNYLELTELKH 140 (153)
Q Consensus 110 ~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~ 140 (153)
.+..++..+.++.+....|+....+|+|.=+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555544433
No 28
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.58 E-value=1.2e+02 Score=28.76 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=42.9
Q ss_pred cCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCc------hhHHHHHHHHHHHHHHHHHHHH
Q psy15626 50 LNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNP------REIIDLENHLERTESEILELSQ 123 (153)
Q Consensus 50 LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~------~~id~le~~l~~le~~l~~l~~ 123 (153)
|+..|..+..-=-..++|..++||.|.-|..++..... +. .|..|+. .++..|..+++.+..++..+..
T Consensus 34 mseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~---~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~ 108 (617)
T PF15070_consen 34 MSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PE---PPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVE 108 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--cc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333345678899999999999998876442 11 1222332 2345566666666666666554
Q ss_pred hHHHH
Q psy15626 124 NAINL 128 (153)
Q Consensus 124 n~e~L 128 (153)
+.+.|
T Consensus 109 ~ne~L 113 (617)
T PF15070_consen 109 NNEQL 113 (617)
T ss_pred HHHHH
Confidence 54444
No 29
>PHA02047 phage lambda Rz1-like protein
Probab=53.45 E-value=86 Score=22.86 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHhccccCCC
Q psy15626 100 NPREIIDLENHLERTESEILELSQNAINLKSNYLE-LTELKHVLEKTQTFFHEP 152 (153)
Q Consensus 100 ~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~-l~E~~~VL~~~~~ff~~~ 152 (153)
.+.+..++.++++.++.++....+....|..+-+. -.|.+..|++-+.|=++|
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~P 85 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRP 85 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 36788999999999999999999999999877554 457788888777766654
No 30
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.97 E-value=56 Score=25.00 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=24.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 98 APNPREIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 98 ~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+++.++.++..++..+..++.++......|+..+..|
T Consensus 68 ~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777777777777666666655544
No 31
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.84 E-value=59 Score=20.86 Aligned_cols=36 Identities=33% Similarity=0.349 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
..+.+|+..+..++.+...+......|......|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367778888888888877777777777777766654
No 32
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.50 E-value=50 Score=25.06 Aligned_cols=72 Identities=24% Similarity=0.225 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHH
Q psy15626 66 RRCDELERKIRYIEAEINK--EGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTEL-KHVL 142 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k--~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~-~~VL 142 (153)
--.+.+-+.-+.++.++.- .++. ....++...+..+++-+..|.++.+|...+.+.+.+..+. ++||
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~----------lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLE----------LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3345555555666666541 1110 1235777788888888888999999999999999888888 8888
Q ss_pred HHhcc
Q psy15626 143 EKTQT 147 (153)
Q Consensus 143 ~~~~~ 147 (153)
.....
T Consensus 90 ~~~~~ 94 (160)
T PF13094_consen 90 QLDDS 94 (160)
T ss_pred ccccc
Confidence 76543
No 33
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=51.92 E-value=65 Score=23.66 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q psy15626 98 APNPREIIDLENHLERTESEILELS 122 (153)
Q Consensus 98 ~~~~~~id~le~~l~~le~~l~~l~ 122 (153)
.|+..+++.|+.+|+.|+.++.++.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677899999999999999998764
No 34
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=51.79 E-value=30 Score=25.17 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCC
Q psy15626 126 INLKSNYLELTELKHVLEKTQTFFHEP 152 (153)
Q Consensus 126 e~L~~~~~~l~E~~~VL~~~~~ff~~~ 152 (153)
..|++...+|.....+|.++..||...
T Consensus 81 ~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 81 KELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 445555566667777888888888643
No 35
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.36 E-value=64 Score=20.94 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhc
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLEL-TELKHVLEKTQ 146 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l-~E~~~VL~~~~ 146 (153)
...+.++..++..+..++.++.+..+.|+.....| ..-.++-..|+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45667788888888888888888888888888887 55555555554
No 36
>KOG0963|consensus
Probab=50.59 E-value=71 Score=30.30 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=42.2
Q ss_pred hcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 65 VRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
=.|+..+||...++..++.+++-.... .....++.....+.++++++.+++..++.++....++.|
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~-------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKL-------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh-------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999876633211 122355666666666666666666666666655555444
No 37
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=49.89 E-value=16 Score=24.90 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=28.4
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeeccc
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVS 32 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D~~ 32 (153)
|.++.||+..+.+-+++..|..+.-|.=+..|
T Consensus 30 ~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S 61 (71)
T PF09902_consen 30 MKYVVLYVNEEDVEEIIEKLKKLKFVKKVEPS 61 (71)
T ss_pred ccEEEEEECHHHHHHHHHHHhcCCCeeEEecc
Confidence 77999999999999999999999988776633
No 38
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=48.79 E-value=1.1e+02 Score=23.97 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
-+|.+.-.+.-|+.++.+..+++.-. ...+.++-+.+++++.++..+..-++.+.
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~--------kk~~~~~~eelerLe~~iKdl~~lye~Vs 99 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQ--------KKQLQDIKEELERLEENIKDLVSLYELVS 99 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccch--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888776654322 22344444444444444444444444333
No 39
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=48.18 E-value=78 Score=22.82 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
.++....+++..++..++++...|.....++.....+|..
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~ 41 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLED 41 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777888888888887777777777777754
No 40
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.48 E-value=78 Score=27.10 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 109 NHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 109 ~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+-..+..++.++.+..+.|.+.+..+
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 41
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.72 E-value=68 Score=19.79 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 114 TESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 114 le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
+|.+-.-+..+++.|+.++..|.....-|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKL 31 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554444433
No 42
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.73 E-value=48 Score=30.96 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHHHHHHHcCCcccCCCCCCC---------CCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINKEGVQIQENSTFPN---------APNPREIIDLENHLERTESEILELSQNAINLKSNYLE 134 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i~i~~~~~~~~---------~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~ 134 (153)
.|++++|-+|.-|.....||+.++.+...... ........+|++++..++.++.+.-..+...+++...
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999987654321100 0112245556666666666666666655555555444
No 43
>PRK04406 hypothetical protein; Provisional
Probab=45.54 E-value=96 Score=21.13 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L 128 (153)
++.+++++..||.++.-+....+.|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333
No 44
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=61 Score=30.77 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
..++..++.++..|+.+|.+-..-.+.|++.++++.-.+.+.
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE 514 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 468888999999999999999999999999999887665543
No 45
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=44.74 E-value=94 Score=21.16 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=44.1
Q ss_pred HHHHHhhhccceeeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCC
Q psy15626 15 SSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENST 94 (153)
Q Consensus 15 ~~V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~ 94 (153)
.++..|.++|++.-.| ..-+.+.=+.-...+-....|.+.|..+.....
T Consensus 7 ~i~~~L~~~~~l~~~D-------------------------------~~~l~~yc~~~~~~~~~~~~l~~~G~~~~~~~G 55 (100)
T PF05119_consen 7 RIVPELKELGILSNLD-------------------------------VPLLERYCEAYSRYREAEKELKKEGFVVETKNG 55 (100)
T ss_pred HHHHHHHHcCCCcHhH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCceeeCCCC
Confidence 5788888889988888 222444444445555567777788876433222
Q ss_pred -CCCCCCchhHHHHHHHHHHHHHHH
Q psy15626 95 -FPNAPNPREIIDLENHLERTESEI 118 (153)
Q Consensus 95 -~~~~~~~~~id~le~~l~~le~~l 118 (153)
....|....+.+...++.++..+|
T Consensus 56 ~~~~nP~~~~~~~~~~~~~~l~~~l 80 (100)
T PF05119_consen 56 NPKKNPAVSILNKAMKQMRSLASEL 80 (100)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHc
Confidence 223344456666666666666554
No 46
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=44.67 E-value=68 Score=22.63 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
.+|.||++-+.+..+|+++-++....+..+
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444443
No 47
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.45 E-value=1.1e+02 Score=22.49 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15626 111 LERTESEILELSQNAINLKSNYLELTELKHV 141 (153)
Q Consensus 111 l~~le~~l~~l~~n~e~L~~~~~~l~E~~~V 141 (153)
+.+++..+.++.+....|+....+++|.=+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~ 40 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTA 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 48
>PF14182 YgaB: YgaB-like protein
Probab=44.34 E-value=1.1e+02 Score=21.43 Aligned_cols=20 Identities=40% Similarity=0.840 Sum_probs=14.2
Q ss_pred hhhcchHHHHHHHHHHHHHH
Q psy15626 63 SEVRRCDELERKIRYIEAEI 82 (153)
Q Consensus 63 ~evrRcdemeRklr~l~~ei 82 (153)
.++-||-++|+.|.-++.+-
T Consensus 21 sElERCqeIE~eL~~l~~ea 40 (79)
T PF14182_consen 21 SELERCQEIEKELKELEREA 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888877776544
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.44 E-value=1.8e+02 Score=23.58 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINK 84 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k 84 (153)
-|..++++++.-++.++..
T Consensus 93 ~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888865
No 50
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=42.33 E-value=1.2e+02 Score=23.58 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 75 IRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 75 lr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
|+++.. +...|+++.++......+......-+++++..++.++.++......|..-.
T Consensus 48 L~~I~~-lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 48 LEQICA-YRSAGVSLEDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred HHHHHH-HHHcCCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 467788776543322222233445577788888888877777776666544
No 51
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=42.27 E-value=8.1 Score=36.37 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=29.1
Q ss_pred HHhhhccceeeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHHHHH
Q psy15626 18 STLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 18 ~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~ 83 (153)
..++++.++..+| .++++-++.+.+- +.+.+++++...+......
T Consensus 4 ~~M~kv~i~~~~~-------------------~~~~vi~~L~~~g--~~~~~d~~~~~~~~~~~~~ 48 (660)
T COG1269 4 EKMKKVSIIGLKS-------------------ELDPVLAELHDFG--LVHLEDLEEGEKGLKELEK 48 (660)
T ss_pred hhheeEEEEeehh-------------------hhhHHHHHHHHcC--eEEeecccccccccccccc
Confidence 4567777777777 7777766666655 6666666666655544443
No 52
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=42.14 E-value=1.1e+02 Score=22.58 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFF 149 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff 149 (153)
.+..|...++++..++.+-=+..+.+...+..+-+-..+|+.+..|+
T Consensus 80 ~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 80 SVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555566666777777777776665
No 53
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.81 E-value=41 Score=26.58 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQ 123 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~ 123 (153)
++|+++-++|.+||.++.++..
T Consensus 125 ~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 125 REMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5888888888888888877544
No 54
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.61 E-value=1.3e+02 Score=26.32 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=31.3
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHcCCcccCC-CCCCCCCCchhHHHHHHHHHHH
Q psy15626 62 VSEVRRCDELERKIRYIEAEINKEGVQIQEN-STFPNAPNPREIIDLENHLERT 114 (153)
Q Consensus 62 v~evrRcdemeRklr~l~~ei~k~~i~i~~~-~~~~~~~~~~~id~le~~l~~l 114 (153)
.....|.-++|++|.-||..|.-..-..+.. .+..+.|-...++.|+.++.-|
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL 258 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLL 258 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhc
Confidence 3568999999999999999996521111111 1122333334566665555544
No 55
>PRK10869 recombination and repair protein; Provisional
Probab=40.14 E-value=1.8e+02 Score=26.78 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.6
Q ss_pred hcchHHHHHHHHHHHHHHHHcCCccc
Q psy15626 65 VRRCDELERKIRYIEAEINKEGVQIQ 90 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~~i~i~ 90 (153)
-.|++++|.+|..|...-.|||..+.
T Consensus 295 p~~l~~ie~Rl~~l~~L~rKyg~~~~ 320 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARKHHVSPE 320 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45689999999999999999996543
No 56
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.94 E-value=1e+02 Score=22.05 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
...++.++..+..++..+..+.+....+.+++.++.
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888888888888888888877764
No 57
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.93 E-value=58 Score=26.43 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=28.3
Q ss_pred hhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 63 SEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 63 ~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
+.-.|-+..+.+|+.|...+..+...... ....+..|+..++.++.+|......+..++..+
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~--------aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEF--------AERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666665543211000 012344445555555555544444444444444
No 58
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.79 E-value=1.4e+02 Score=21.22 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQ 146 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~ 146 (153)
.++...+..+..++..+.+....|.....++...+..|....
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888888888877777777777666543
No 59
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=39.20 E-value=1.3e+02 Score=20.90 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFFHEP 152 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff~~~ 152 (153)
.++..|...|..+-.++..+..-.+.|+..-.-|.+|-.=|-.+...|.++
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~s~ 73 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQST 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 366677777777777777777777788777777777777776666666543
No 60
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.08 E-value=1.6e+02 Score=22.63 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKT 145 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~ 145 (153)
..+++++.++++.+..++..+..+...|....+++.+-...|+..
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~l 49 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENL 49 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999988888888777777653
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=38.73 E-value=2.2e+02 Score=23.45 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
....++...+..++.++.++..........|..|...+--|.
T Consensus 255 ~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 255 EEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467777888888888888888888888888888887776654
No 62
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.00 E-value=2.1e+02 Score=27.46 Aligned_cols=16 Identities=13% Similarity=0.544 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHH
Q psy15626 68 CDELERKIRYIEAEIN 83 (153)
Q Consensus 68 cdemeRklr~l~~ei~ 83 (153)
.+++++++..+..++.
T Consensus 560 r~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665554
No 63
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=37.35 E-value=1.6e+02 Score=21.91 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L 128 (153)
.++++|+++..+..++..+.++...|
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~l 34 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSL 34 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555444443
No 64
>PRK02119 hypothetical protein; Provisional
Probab=37.16 E-value=1.3e+02 Score=20.29 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy15626 107 LENHLERTESEI 118 (153)
Q Consensus 107 le~~l~~le~~l 118 (153)
+++++..||.++
T Consensus 7 ~e~Ri~~LE~rl 18 (73)
T PRK02119 7 LENRIAELEMKI 18 (73)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 65
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=36.74 E-value=1.3e+02 Score=20.02 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFF 149 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff 149 (153)
.+-++..++.+++.++.++.+....|+.....|.....|=..|..-+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 45678888888889998888899999988888887777766666443
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.59 E-value=1.2e+02 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=16.4
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHcC
Q psy15626 60 KFVSEVRRCDELERKIRYIEAEINKEG 86 (153)
Q Consensus 60 ~fv~evrRcdemeRklr~l~~ei~k~~ 86 (153)
.+++-=...++++.+++-++.+|.+..
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r 72 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIR 72 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677777777776666543
No 67
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=36.39 E-value=1.4e+02 Score=20.70 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=27.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 100 NPREIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 100 ~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
....+.+++++++.++.++..+......++.+..
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888888888888888888888887776654
No 68
>PRK11637 AmiB activator; Provisional
Probab=36.26 E-value=2.7e+02 Score=24.44 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
++..++.++.+++.+|.++...++.++..+...
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 69
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=36.04 E-value=2.5e+02 Score=26.17 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
...+.+++++++++++++.++.+..+.+.+.+..+..
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776666665544433
No 70
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=35.76 E-value=1.1e+02 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 106 DLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 106 ~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
.+|+++..+|.+|.+..+-.+.-+.+..
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877766666555443
No 71
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.69 E-value=1.7e+02 Score=21.12 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKT 145 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~ 145 (153)
.++...++++..++..+.+....|.....++......|...
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777766666666666544
No 72
>PRK01203 prefoldin subunit alpha; Provisional
Probab=35.66 E-value=1.1e+02 Score=23.14 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
..-++.|.+++++++.=+.+.+.+.+.+..++++|-
T Consensus 86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888898888888888888888888875
No 73
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=35.28 E-value=1.4e+02 Score=20.21 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
.++++...++.++.++..+......+-.+-+++.+
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~ 61 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLE 61 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444444443
No 74
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.76 E-value=93 Score=28.58 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHH---HcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEIN---KEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 67 RcdemeRklr~l~~ei~---k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
+.+|+|.+|.-++.++. + ...+++++|++++.++.+|.+..+.+..+
T Consensus 77 kasELEKqLaaLrqElq~~sa------------------q~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNK------------------QRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhh------------------hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
No 75
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=34.42 E-value=2.3e+02 Score=25.55 Aligned_cols=72 Identities=14% Similarity=0.356 Sum_probs=45.3
Q ss_pred Chhhhchhhhh------------cchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15626 55 NAFQRKFVSEV------------RRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELS 122 (153)
Q Consensus 55 ~~fqR~fv~ev------------rRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~ 122 (153)
...+|.|+..- .|.|+++-.+.-|..-+...|+ .|.+..+..+...+..+..+|..+.
T Consensus 197 ~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~Rgv----------Rp~~~qle~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 197 GDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGV----------RPSPKQLETVAKDISRASKELKKMK 266 (424)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788887653 3445555555555555555554 3677889999999999999988888
Q ss_pred HhHHHHHHHHHHHH
Q psy15626 123 QNAINLKSNYLELT 136 (153)
Q Consensus 123 ~n~e~L~~~~~~l~ 136 (153)
.-+..++-......
T Consensus 267 ~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 267 EYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHH
Confidence 88888876666553
No 76
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.26 E-value=1.2e+02 Score=25.76 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccc
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTF 148 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~f 148 (153)
.+++.+++++.+.+.++.++.+.....+.++.+|...+.-|.++-.|
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999999999999999999999998888888775443
No 77
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.22 E-value=1.4e+02 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEI 118 (153)
Q Consensus 103 ~id~le~~l~~le~~l 118 (153)
+|+.++++++-||.-|
T Consensus 168 Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 78
>PRK02302 hypothetical protein; Provisional
Probab=34.15 E-value=53 Score=23.43 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=29.3
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeecccc
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSI 33 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D~~~ 33 (153)
|.++-||+..+.|-+++..|..+..|.=++.|.
T Consensus 36 ~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 68 (89)
T PRK02302 36 SRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSA 68 (89)
T ss_pred ccEEEEEECHHHHHHHHHHHhcCCCeeEEcccC
Confidence 678999999999999999999999998887443
No 79
>KOG0804|consensus
Probab=33.39 E-value=2.3e+02 Score=26.15 Aligned_cols=42 Identities=24% Similarity=0.189 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
+..++++.-.-.|+.+.+++...+.+.+++..+.|.-..|.+
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555544444
No 80
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.14 E-value=3.1e+02 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHHHHHHHcCCcc
Q psy15626 66 RRCDELERKIRYIEAEINKEGVQI 89 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i~i 89 (153)
.+.++++.+|.-+.....|++..+
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCH
Confidence 457788888888888888887543
No 81
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=32.33 E-value=2.2e+02 Score=23.14 Aligned_cols=65 Identities=26% Similarity=0.346 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 69 DELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 69 demeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
+||-|+||..+++--+. .+ .-..-|.++..++..+-.+|+.+.+-.+.|+..-.+|.++-+.|..
T Consensus 19 eel~~rLR~~E~ek~~~--m~---------~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd 83 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSL--MV---------EHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD 83 (195)
T ss_pred HHHHHHHHHHHHHHHHH--HH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 68888999888774432 11 0124788899999999999999999999999999999888777653
No 82
>PRK02886 hypothetical protein; Provisional
Probab=32.15 E-value=62 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=29.4
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeecccc
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSI 33 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D~~~ 33 (153)
|.++.||+..+.|-+++..|..+..|.=++.|.
T Consensus 34 ~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 66 (87)
T PRK02886 34 LKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPSY 66 (87)
T ss_pred ccEEEEEECHHHHHHHHHHHhcCCCeeEEcccC
Confidence 678999999999999999999999998888443
No 83
>PRK11637 AmiB activator; Provisional
Probab=32.12 E-value=3.4e+02 Score=23.78 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+.+++.++..++.++.++......++.++..+
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 84
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=31.70 E-value=1.2e+02 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
+|.+++..++++.+++.-....+.|+++.+++.-+.....+
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne 178 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNE 178 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhH
No 85
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.52 E-value=1.6e+02 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 107 LENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 107 le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
|=.++..++.+|..+-.....|++++.+++|.-+.|+
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4456788888999999999999999999988887776
No 86
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=31.38 E-value=2.1e+02 Score=20.86 Aligned_cols=42 Identities=5% Similarity=0.075 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKH 140 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~ 140 (153)
|....+++++.++..+-.++....+.|+.+-+++...+....
T Consensus 49 tesitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 49 TESITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455689999999999999999999999999988877655433
No 87
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=31.18 E-value=1.3e+02 Score=18.56 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
..++++..-+=++|.++++-.+++..+.+...++--+
T Consensus 4 ~~ieelkqll~rle~eirett~sl~ninksidq~dk~ 40 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKY 40 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhch
Confidence 4677788888899999998888887777766555333
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.76 E-value=1.7e+02 Score=22.90 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
.+..++..+..++.++.+.+...+.|+..+..|.-...++
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555554444444433
No 89
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.26 E-value=48 Score=22.68 Aligned_cols=27 Identities=37% Similarity=0.698 Sum_probs=22.4
Q ss_pred chhhhhcchHHHHHHHHHHHHHHH-HcC
Q psy15626 60 KFVSEVRRCDELERKIRYIEAEIN-KEG 86 (153)
Q Consensus 60 ~fv~evrRcdemeRklr~l~~ei~-k~~ 86 (153)
.|..=.+|+|++|.|+.|-.+|+. +.|
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~G 40 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAG 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 466678999999999999999995 444
No 90
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.20 E-value=1.7e+02 Score=20.53 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
..+..++..+.+++..+..+.+....++.++.++
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666665555544
No 91
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.07 E-value=65 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
+-+.|...+++|..|+++|..-. .++.+
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44556666777777777776666 44433
No 92
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=29.89 E-value=2.1e+02 Score=21.58 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQT 147 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ 147 (153)
.|-+++..+.++...+.+-.+.+...-..+.++.|....|.+++.
T Consensus 57 riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~ 101 (131)
T PF10158_consen 57 RIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQS 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666665544
No 93
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=29.45 E-value=1.5e+02 Score=26.75 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
.|.++++.++.-.+..+..... . ........++..++.++..+..++.-+...++.|+
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~----~--~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELEL----N--PDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHhhhcccc----c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777666665443 0 00111123455555555555555554444444443
No 94
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.15 E-value=1.4e+02 Score=25.89 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15626 127 NLKSNYLELTELKHVLEKT 145 (153)
Q Consensus 127 ~L~~~~~~l~E~~~VL~~~ 145 (153)
+|++-..+...+++|+...
T Consensus 118 ALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666643
No 95
>PHA02557 22 prohead core protein; Provisional
Probab=29.10 E-value=3.7e+02 Score=23.00 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q psy15626 69 DELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQT 147 (153)
Q Consensus 69 demeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ 147 (153)
+=-|..|.=++.....+++.+|+. .-..+..|+.+|+..++++..+.+-...|++..+.+.=...+-+.|..
T Consensus 115 em~Es~l~GLK~lF~Ehnv~vpee-------~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~g 186 (271)
T PHA02557 115 ELFESFLGGLKELFVEHNVVVPEE-------KVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKD 186 (271)
T ss_pred HHHHHHHHHHHHHHHHhCcCCcHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555666677777778776553 224788899999999999999888888888888877665555555544
No 96
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.05 E-value=48 Score=22.67 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=21.0
Q ss_pred chhhhhcchHHHHHHHHHHHHHHH
Q psy15626 60 KFVSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 60 ~fv~evrRcdemeRklr~l~~ei~ 83 (153)
.|..=.+|+|++|.|+.|-.+|+.
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~ 36 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVA 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678999999999999999985
No 97
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.91 E-value=1.8e+02 Score=19.45 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
+..|+.+++++-....++..-...|+.+...+...+.-|.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777777777666655543
No 98
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=28.87 E-value=3.6e+02 Score=22.85 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELK 139 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~ 139 (153)
-+.++++.++.++.++..... ...+.......+..-++..+.++..+.+.+..+.+.+..+.++.
T Consensus 282 ~i~~l~~~~~~~~~~l~~~~~--------~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 282 DIKELEKGLEKIKKELEAIEK--------DEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHCCT--------TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccc--------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777778888888776543 11233456677777788888888888888888888888877664
No 99
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=28.85 E-value=83 Score=22.50 Aligned_cols=18 Identities=17% Similarity=0.623 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHcCCcccC
Q psy15626 73 RKIRYIEAEINKEGVQIQE 91 (153)
Q Consensus 73 Rklr~l~~ei~k~~i~i~~ 91 (153)
+.|+++. .+...|.++.+
T Consensus 45 ~~l~~I~-~lr~~G~~l~~ 62 (107)
T cd01111 45 QRLRFVR-AAFEAGIGLDE 62 (107)
T ss_pred HHHHHHH-HHHHcCCCHHH
Confidence 4556663 35667776654
No 100
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=28.73 E-value=48 Score=23.08 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.4
Q ss_pred chhhhhcchHHHHHHHHHHHHHHH
Q psy15626 60 KFVSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 60 ~fv~evrRcdemeRklr~l~~ei~ 83 (153)
.|..=.+|+|++|.|+.|-.+|+.
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~ 39 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIF 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778999999999999999985
No 101
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=28.39 E-value=2.5e+02 Score=23.43 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
+...+++.||.+|.+++..+.........++.++.---=...||
T Consensus 12 ~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l 55 (251)
T COG5415 12 KYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVL 55 (251)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45568999999999999999999888888888876433333333
No 102
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.38 E-value=2.1e+02 Score=24.75 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFF 149 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff 149 (153)
.-.||.+|+.+.+--.-.-+-..++..|++....|.|...-|.+++.-+
T Consensus 38 QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 38 QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKL 86 (307)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999988888776543
No 103
>PRK01203 prefoldin subunit alpha; Provisional
Probab=28.26 E-value=2.7e+02 Score=21.12 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 106 DLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 106 ~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
+++++++-++.++..+.+....|+.-..++.+-...|..
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777777777777777777777777777666666654
No 104
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.99 E-value=2.1e+02 Score=26.38 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLE----LTELKHVL 142 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~----l~E~~~VL 142 (153)
+++.++.++.-+...+....++.. .-...+.++..+++.++.+..++++....|++.... +..++..|
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS--------~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYS--------EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554333211 112478888999999999999999999999877655 45556666
Q ss_pred HHhcccc
Q psy15626 143 EKTQTFF 149 (153)
Q Consensus 143 ~~~~~ff 149 (153)
..+...+
T Consensus 424 ~~ikR~l 430 (560)
T PF06160_consen 424 REIKRRL 430 (560)
T ss_pred HHHHHHH
Confidence 6555544
No 105
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.85 E-value=2.3e+02 Score=20.30 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
....++..++..++.++.++.+..+.|+.+...|..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 466777777777777777777777777777777766
No 106
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.74 E-value=57 Score=24.15 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.2
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeec
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRD 30 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D 30 (153)
|.-.+.|||.+-.-.+..+|++.|.-|.-|
T Consensus 5 ~~K~~vyVP~~~~e~vr~aL~~aGag~iG~ 34 (109)
T COG3323 5 LYKIEVYVPEEYVEQVRDALFEAGAGHIGN 34 (109)
T ss_pred eeEEEEEeCHHHHHHHHHHHHhcCCcceec
Confidence 345789999999999999999999999888
No 107
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=27.49 E-value=2.3e+02 Score=22.73 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHHHHHHHcCCc---ccCCC---CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINKEGVQ---IQENS---TFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i~---i~~~~---~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
-||.-+|++|.|+..-+..+... +.+-. .....+....+..=.+.++.+|.+-..+......-......|.
T Consensus 71 tRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE 147 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELE 147 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999888764321 11000 0011233445555556778888888877766555555544443
No 108
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.26 E-value=2.3e+02 Score=20.01 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
..++.++.+++.+..++..+.+....+.+.+..+..
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777766654
No 109
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=27.07 E-value=1.2e+02 Score=24.83 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCcccC---CCCCCCC-------------CCchhHHHHHH---HHHHHHHHHHHHHHhHHHH
Q psy15626 68 CDELERKIRYIEAEINKEGVQIQE---NSTFPNA-------------PNPREIIDLEN---HLERTESEILELSQNAINL 128 (153)
Q Consensus 68 cdemeRklr~l~~ei~k~~i~i~~---~~~~~~~-------------~~~~~id~le~---~l~~le~~l~~l~~n~e~L 128 (153)
.+++-+.-|.|+.-|...|+...- ...+|.+ ...+.|+-+|. -.+.+..+...+...++.|
T Consensus 18 ~~~vG~lTR~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l 97 (214)
T PRK11166 18 IARIGQLTRMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEW 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445556667888888888755321 1233332 11234444444 2334666677777777777
Q ss_pred HHHHHHHHHHHHHHHHhccccC
Q psy15626 129 KSNYLELTELKHVLEKTQTFFH 150 (153)
Q Consensus 129 ~~~~~~l~E~~~VL~~~~~ff~ 150 (153)
..+-..+.|++.+...+..|+.
T Consensus 98 ~~~~~~~~e~~~L~~~~~~fL~ 119 (214)
T PRK11166 98 FANPIELADARELVTDTRAFLA 119 (214)
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 7766667788888877777764
No 110
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=26.97 E-value=1.2e+02 Score=21.20 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=20.8
Q ss_pred HHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 82 INKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 82 i~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L 128 (153)
+...|+++................-+.++...++.++.+++.....|
T Consensus 53 lr~~g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l 99 (103)
T cd01106 53 LKELGFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTI 99 (103)
T ss_pred HHHcCCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567766443211111112334444555555555555554444443
No 111
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.83 E-value=1.2e+02 Score=20.53 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
-.++.....+..+..++..+++....++++...|.
T Consensus 57 ~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 57 FDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555788888889999999999999988877663
No 112
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.64 E-value=3.6e+02 Score=24.48 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
++..+++++.+....+..++++...+..+++.|
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 444455554444444444444444444444444
No 113
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.60 E-value=2.7e+02 Score=20.65 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
|+...+..|...|.+++.++..+..-+..|......+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDEL 49 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444444443
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.34 E-value=4.7e+02 Score=23.33 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
+..+..++.++..++.++..+.+....+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555333
No 115
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.21 E-value=1.2e+02 Score=16.38 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILE 120 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~ 120 (153)
+|+.+..+|..||++|..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 466666666666666654
No 116
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=26.10 E-value=2.3e+02 Score=19.70 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
|.++|+.+++...-+.++.+..+.+++-.
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~ 30 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQ 30 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554544444444444433
No 117
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.90 E-value=2.6e+02 Score=21.82 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
+|=|++||.|+-+..-+.++. .-+.++.--++-+-..|.+++..++.++.+
T Consensus 105 ~rRD~LErrl~~l~~tierAE---------------~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 105 ERRDELERRLRNLEETIERAE---------------NLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456788888888888777653 245555555666777777777766666543
No 118
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.71 E-value=2e+02 Score=18.92 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.3
Q ss_pred cchHHHHHHHHHHHHHHHHcC
Q psy15626 66 RRCDELERKIRYIEAEINKEG 86 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~ 86 (153)
.|++++|-++.|.+.-|..-+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999888887543
No 119
>KOG4191|consensus
Probab=25.62 E-value=4e+02 Score=24.67 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=45.4
Q ss_pred HHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHhc
Q psy15626 79 EAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLEL-------TELKHVLEKTQ 146 (153)
Q Consensus 79 ~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l-------~E~~~VL~~~~ 146 (153)
..+++..||-. .++ .|.+..-|++-++|.++-.+|..+++.....+..+..+ .|+++||...+
T Consensus 383 K~eL~~~Gll~--ded---~pasdddDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~lddlD 452 (516)
T KOG4191|consen 383 KEELIAQGLLE--DED---RPASDDDDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVLDDLD 452 (516)
T ss_pred HHHHHHhcccc--ccC---CCcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34566666643 222 34455689999999999999999999988888777665 56777776543
No 120
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.57 E-value=3.2e+02 Score=25.13 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=51.0
Q ss_pred cCCCCChhhhchhhhhcchHHHHHHHH-----------HHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy15626 50 LNSRMNAFQRKFVSEVRRCDELERKIR-----------YIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEI 118 (153)
Q Consensus 50 LN~~v~~fqR~fv~evrRcdemeRklr-----------~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l 118 (153)
+|-++++..|.=.+--+..+|..||.. -+...+.++||.-. .-..++..+-..|-.+..++
T Consensus 122 v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~--------nir~ELl~l~~~LP~~~~~i 193 (507)
T PF05600_consen 122 VNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGE--------NIREELLELVKELPSLFDEI 193 (507)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccc--------hhHHHHHHHHHhhHHHHHHH
Confidence 888999998887777777777777753 34566777777521 12356777767776667666
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy15626 119 LELSQNAINLKSNYLELTE 137 (153)
Q Consensus 119 ~~l~~n~e~L~~~~~~l~E 137 (153)
.+...+...-.+-|.....
T Consensus 194 ~~~i~~l~~aie~Y~~f~~ 212 (507)
T PF05600_consen 194 VEAISDLQEAIEYYQAFVE 212 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666554444444444444
No 121
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.44 E-value=2.2e+02 Score=24.92 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
.++.+|.+.+..|...|.+...++..|.+....|.+...+-..
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~ 366 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNN 366 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888899999999888888888888888776655443
No 122
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.10 E-value=3.9e+02 Score=21.93 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=43.7
Q ss_pred HHHHHHHH-HHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15626 69 DELERKIR-YIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKH 140 (153)
Q Consensus 69 demeRklr-~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~ 140 (153)
+.+|++|| -|+.++......-.........++......|...+...|.+|..+-.-.-....+|.+=-..++
T Consensus 23 E~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq 95 (205)
T PF12240_consen 23 EQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQ 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777775 4677775432111111111112223567788888999999999998888888877755433433
No 123
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.51 E-value=2.2e+02 Score=24.94 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
...++++|+++..++.++.++.+..+.+.++...+.+
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~ 179 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED 179 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3578889999999999888888887777766655544
No 124
>KOG0245|consensus
Probab=24.47 E-value=4.3e+02 Score=27.08 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCcc-------cCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHH
Q psy15626 72 ERKIRYIEAEINKEGVQI-------QENSTFPN-APNPREIIDLENHLERTESEILELSQNAI-NLKSNYLELTELKHVL 142 (153)
Q Consensus 72 eRklr~l~~ei~k~~i~i-------~~~~~~~~-~~~~~~id~le~~l~~le~~l~~l~~n~e-~L~~~~~~l~E~~~VL 142 (153)
.+.||.|..|+.|..-.+ +.....|. .....++.++-++|.+.|+.+.++++.++ .|++-.....|...+|
T Consensus 360 aKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L 439 (1221)
T KOG0245|consen 360 AKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALL 439 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 466777777777643111 11122221 12345899999999999999999999875 5666666677777777
Q ss_pred HHhcccc
Q psy15626 143 EKTQTFF 149 (153)
Q Consensus 143 ~~~~~ff 149 (153)
.+.+--+
T Consensus 440 ~emGva~ 446 (1221)
T KOG0245|consen 440 AEMGVAV 446 (1221)
T ss_pred HhcCcee
Confidence 7765444
No 125
>PRK14127 cell division protein GpsB; Provisional
Probab=24.47 E-value=2.8e+02 Score=20.33 Aligned_cols=35 Identities=34% Similarity=0.319 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
.+|++....+.+..++.++.+....|+.+..++..
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666665555555555444
No 126
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.42 E-value=2.8e+02 Score=20.11 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLE 134 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~ 134 (153)
.+.++++++..+..++.++.+....|-+.-..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~ 40 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENAR 40 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655555544333
No 127
>PF12339 DNAJ_related: DNA-J related protein ; InterPro: IPR021059 This domain family is approximately 130 amino acids in length and contains a conserved YYLD sequence motif. The proteins have a C-terminal DNA-J domain PF00226 from PFAM and most of the sequences are annotated as DNA-J related proteins, other annotations include: DnaJ-class molecular chaperon and formate dehydrogenase; but there is currently no publications to support these annotations.
Probab=24.39 E-value=39 Score=25.63 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=33.3
Q ss_pred HHHHHHHhhhccce--eeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcC
Q psy15626 13 AYSSVSTLGEAGIV--QFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEG 86 (153)
Q Consensus 13 A~~~V~eLGelG~v--qF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~ 86 (153)
-|+.++.|++.|.. ...| ++++..-|+|.|. +-.-|=-+.+++...+
T Consensus 22 e~~L~~~L~~~~~~~f~~l~-------------------~~~~~~LFk~hFL--------l~naLY~Lq~~L~~~~ 70 (132)
T PF12339_consen 22 EHELISQLQEQGYILFPELD-------------------LDPPLDLFKRHFL--------LFNALYQLQEQLRPEG 70 (132)
T ss_pred HHHHHHHHhhCcCccCCCCC-------------------CCcHHHHHHHHHH--------HHHHHHHHHHHHHccC
Confidence 36789999999998 4455 7888889999997 2233444556665555
No 128
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.34 E-value=4.7e+02 Score=22.78 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=45.1
Q ss_pred hhhhc-chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15626 62 VSEVR-RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKH 140 (153)
Q Consensus 62 v~evr-RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~ 140 (153)
+++++ |+..+.++.+-+..+...+|- ++-++...-..|...+.+...+-..+..-.+.|+.++.++...--
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d--------~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGD--------PSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCC--------ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 56666 777777777666544433321 111222233444555666666666777777777777777777777
Q ss_pred HHHHh
Q psy15626 141 VLEKT 145 (153)
Q Consensus 141 VL~~~ 145 (153)
+|++.
T Consensus 104 lLR~~ 108 (319)
T PF09789_consen 104 LLREK 108 (319)
T ss_pred HHHHH
Confidence 77653
No 129
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.26 E-value=2.1e+02 Score=18.68 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKS 130 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~ 130 (153)
.+.+|...++.+...+.+++.-.++|..
T Consensus 6 ~f~eL~D~~~~L~~n~~~L~~ihesL~~ 33 (58)
T PF08653_consen 6 QFAELSDSMETLDKNMEQLNQIHESLSD 33 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 130
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.09 E-value=3.6e+02 Score=22.19 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=43.4
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15626 61 FVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKH 140 (153)
Q Consensus 61 fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~ 140 (153)
..+++.-+++-+..|.-+..++......-....+.. ..=+.+|+.||..+.+.+.+-.+..+....+...|..|.+.-.
T Consensus 20 i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeL-rqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 20 ILQEVESLENEEKCLEEYRKEMEELLQERMAHVEEL-RQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666553211000000000 0002456666666666666666666666666666666666666
Q ss_pred HHHHh
Q psy15626 141 VLEKT 145 (153)
Q Consensus 141 VL~~~ 145 (153)
-+++.
T Consensus 99 ~~R~e 103 (230)
T PF10146_consen 99 ELRKE 103 (230)
T ss_pred HHHHH
Confidence 55543
No 131
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.96 E-value=1.1e+02 Score=19.93 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 71 LERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 71 meRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L 128 (153)
++..+..++.+|.+..-.+-. +++....++.-++.-.+.+..+..++..+.+.+..|
T Consensus 9 L~Kel~kl~~~i~~~~~kL~n-~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKLSN-ENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-TTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHcC-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666654322211 122223334556666666777777776666666554
No 132
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.95 E-value=3.8e+02 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 100 NPREIIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 100 ~~~~id~le~~l~~le~~l~~l~~n~e~L 128 (153)
....+..+++++..++.++.++.+.+-.+
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~ 66 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRE 66 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666665555555444333
No 133
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=23.85 E-value=53 Score=21.00 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.0
Q ss_pred eccCcHHHHHHHhhhccceeeec
Q psy15626 8 IQPEAAYSSVSTLGEAGIVQFRD 30 (153)
Q Consensus 8 ip~E~A~~~V~eLGelG~vqF~D 30 (153)
+|+..++.++..|-+.|+|.-..
T Consensus 34 i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 34 ISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEEc
Confidence 57788999999999999999887
No 134
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=23.72 E-value=67 Score=22.12 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=19.4
Q ss_pred hhhhhcchHHHHHHHHHHHHHHH
Q psy15626 61 FVSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 61 fv~evrRcdemeRklr~l~~ei~ 83 (153)
|-.--+|+|++|+|+.|..+|..
T Consensus 17 fne~~kRLdeieekvef~~~Ev~ 39 (75)
T COG4064 17 FNEIHKRLDEIEEKVEFVNGEVY 39 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 44556899999999999999884
No 135
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=23.52 E-value=2.6e+02 Score=22.20 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKH 140 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~ 140 (153)
..-|++|.+.++.-.+++++-+-.+.|..+..+-+|+..
T Consensus 90 ttkDeie~qmdrivkemrrQlemidkLTtREiEQVeLLk 128 (173)
T PF01452_consen 90 TTKDEIEKQMDRIVKEMRRQLEMIDKLTTREIEQVELLK 128 (173)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456888999999999999999999999998888777643
No 136
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.49 E-value=5.8e+02 Score=24.04 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQTFF 149 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff 149 (153)
+..++..++.+...+.++....+..+....++.+...+..++-..+
T Consensus 344 i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 344 IEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444445555555554444433
No 137
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.49 E-value=3.7e+02 Score=21.13 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
.+..++..+......+.++..++..|+.++.++...+..|
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555444
No 138
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.16 E-value=2.6e+02 Score=20.00 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=9.5
Q ss_pred hhcchHHHHHHHHHH--HHHHH
Q psy15626 64 EVRRCDELERKIRYI--EAEIN 83 (153)
Q Consensus 64 evrRcdemeRklr~l--~~ei~ 83 (153)
.=+|.+.+|.++..+ .+.+.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~ 68 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVH 68 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHH
Confidence 344555555555544 44443
No 139
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=23.08 E-value=3.3e+02 Score=25.90 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYL-ELTELKHVLE 143 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~-~l~E~~~VL~ 143 (153)
...+.+++++++++++++.+..+...++.++.. .+..++..+.
T Consensus 228 ~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 228 EEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888877777776554433 4444444443
No 140
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.92 E-value=1.4e+02 Score=26.60 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNYLE 134 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~~~ 134 (153)
+..+++....++.++.++.+.++.+.....+
T Consensus 367 i~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 367 IEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444433333
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.76 E-value=3.7e+02 Score=20.95 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
.+.+++..+..+..++.++....+...+....+......|
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555544444444444444443
No 142
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=22.66 E-value=6.8e+02 Score=24.03 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=47.8
Q ss_pred hcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 65 VRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
.+-+++++..|.-|+..|+-+--.+.+....++.. . .++++.+.+.+++. ++...+..++++..-.+||..+..
T Consensus 56 ~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~-~-~~~dl~e~vsqm~~---~vK~~L~~vK~qveiAmE~~EL~~ 129 (683)
T PF08580_consen 56 REGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIA-N-SLFDLIEEVSQMEL---DVKKTLISVKKQVEIAMEWEELWN 129 (683)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccccccccccccc-c-cHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45568888888888888876532222221111111 1 47778888888887 566777888888888888876654
No 143
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.48 E-value=2.4e+02 Score=18.57 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
.++.+|......+..+..+++..+.+..+.
T Consensus 21 ~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 21 RIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555543
No 144
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.39 E-value=96 Score=23.89 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=30.4
Q ss_pred hhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccC
Q psy15626 57 FQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQE 91 (153)
Q Consensus 57 fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~ 91 (153)
+.+.|.+.++.+.++.+-|..|+.+|.=...|+|+
T Consensus 19 ~a~~~~~R~~~L~~l~~~L~~L~~EI~y~~tpL~e 53 (170)
T PF09548_consen 19 YARRLKRRVRQLRELRRALQLLETEIRYGATPLPE 53 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 46788899999999999999999999877777765
No 145
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=22.34 E-value=3.2e+02 Score=19.93 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCcccCCCC---C-------------------CCCCCchhHHHHHHHHHHHHHHHHHHHHhH
Q psy15626 68 CDELERKIRYIEAEINKEGVQIQENST---F-------------------PNAPNPREIIDLENHLERTESEILELSQNA 125 (153)
Q Consensus 68 cdemeRklr~l~~ei~k~~i~i~~~~~---~-------------------~~~~~~~~id~le~~l~~le~~l~~l~~n~ 125 (153)
.|-+.|-|..|+.-+.+-.|-|.+.++ . |++-..-.-|+.-+.++++..++.++++-.
T Consensus 10 ~e~l~RHl~Vl~~v~eeqPiGI~klS~~TGmp~HKVRYSLRVLEq~~iI~PS~~GAi~td~~~e~ie~i~~dl~ei~e~~ 89 (101)
T COG3388 10 LETLKRHLSVLKVVLEEQPIGIIKLSDETGMPEHKVRYSLRVLEQENIISPSRQGAILTDDFPEFIEEIIGDLSEINEEA 89 (101)
T ss_pred HHHHHHHHHHHHHHHHhCCceeEeechhcCCchhhhhhhhhhhhhcCccCccccCCccCccHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766554433211 1 111112233444445666666666666666
Q ss_pred HHHHHHHHHH
Q psy15626 126 INLKSNYLEL 135 (153)
Q Consensus 126 e~L~~~~~~l 135 (153)
+.+.+..+.+
T Consensus 90 ~~i~e~~~~l 99 (101)
T COG3388 90 ENIEEDVAKL 99 (101)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.28 E-value=2.3e+02 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
.+|..+|+.+..++.+|....|.+.-++.++.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 147
>PF14992 TMCO5: TMCO5 family
Probab=22.11 E-value=1.9e+02 Score=24.83 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=44.3
Q ss_pred hcchHHHHHHHHHHHHHHHHcCCcccCCC--CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 65 VRRCDELERKIRYIEAEINKEGVQIQENS--TFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~~i~i~~~~--~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
++.+++-|-.+.-|+.+|++-.-.....+ +.........+-++|....++|..=..++.|...|.++.
T Consensus 24 L~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~ 93 (280)
T PF14992_consen 24 LQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQ 93 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhh
Confidence 56677788888888888887654333221 222233445677777777888877777777777776654
No 148
>KOG0994|consensus
Probab=22.02 E-value=3.7e+02 Score=28.12 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHcCC
Q psy15626 66 RRCDELERKIRYIEAEINKEGV 87 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i 87 (153)
.+.++||+||..+..-+...++
T Consensus 1201 s~f~~me~kl~~ir~il~~~sv 1222 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSV 1222 (1758)
T ss_pred hHHHHHHHHHHHHHHHhcCCCc
Confidence 3568899999988887755443
No 149
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.76 E-value=2.9e+02 Score=19.37 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCC---CC-CCCCc------hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 69 DELERKIRYIEAEINKEGVQIQENST---FP-NAPNP------REIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 69 demeRklr~l~~ei~k~~i~i~~~~~---~~-~~~~~------~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
-++..+|.-|...+..++........ .+ +..+| .-+.......++|..++.++......|......+
T Consensus 30 r~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 30 RDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777655433221111 00 01111 2344455666666666666666666666555443
No 150
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=1.4e+02 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 98 APNPREIIDLENHLERTESEILELSQN 124 (153)
Q Consensus 98 ~~~~~~id~le~~l~~le~~l~~l~~n 124 (153)
.+..++++.+.++++.|++++..+.+.
T Consensus 79 ~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 79 VARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999998877653
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.47 E-value=3.7e+02 Score=20.38 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccCcHHHHHHHhhhccceeeecc
Q psy15626 9 QPEAAYSSVSTLGEAGIVQFRDV 31 (153)
Q Consensus 9 p~E~A~~~V~eLGelG~vqF~D~ 31 (153)
+.-.+--++..|-+-|.+..++.
T Consensus 31 ~K~~v~k~Ld~L~~~g~i~~K~~ 53 (169)
T PF07106_consen 31 GKTAVQKALDSLVEEGKIVEKEY 53 (169)
T ss_pred cHHHHHHHHHHHHhCCCeeeeee
Confidence 44455668889999999999983
No 152
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=21.32 E-value=3.9e+02 Score=21.65 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
++.-++-..+-.+|.++++....+..+...|..++..|
T Consensus 138 ~e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lL 175 (213)
T PF13093_consen 138 PEEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLL 175 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445677888888888888888888888888888777
No 153
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=21.26 E-value=4.5e+02 Score=21.63 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 68 CDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 68 cdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
+||+=++|-|-.-|++.. ...-.+++.+.+.++.++.+-+..-.+.+.++.+..+-|.
T Consensus 3 ~EELRq~Ll~TTlELE~~------------------k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEAT------------------KMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888877777642 2224456667777777777666666666666666655443
No 154
>KOG0964|consensus
Probab=21.23 E-value=6.2e+02 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKT 145 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~ 145 (153)
..|+++-.++.+++.....+-.+++.|++..+.+...++.+.++
T Consensus 699 ~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s 742 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQES 742 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 47888888999999999999999999999999988888888765
No 155
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=21.21 E-value=4.4e+02 Score=22.65 Aligned_cols=60 Identities=30% Similarity=0.335 Sum_probs=36.3
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhHH
Q psy15626 62 VSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNP-REIIDLENHLERTESEILELSQNAI 126 (153)
Q Consensus 62 v~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~-~~id~le~~l~~le~~l~~l~~n~e 126 (153)
++.-+|.|+|++.+|+-+-+...+--.+ .|.+... ...+++.......+.+|..+.+...
T Consensus 183 ~KKe~rle~l~~~iR~~~~~~E~ameTl-----DPnAk~y~~~~~dl~~~~~ev~~~I~~l~~~~~ 243 (289)
T PF05149_consen 183 YKKERRLEELDRQIRSTHLQQERAMETL-----DPNAKKYSKEKKDLLEQREEVEQEINLLRDKQA 243 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999876665432111 1222222 3566666666666666665555443
No 156
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.08 E-value=4.1e+02 Score=22.73 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
..+...+..+......+.++++....|+.++...+..+.-|.
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777788888888888888887777665555443
No 157
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.02 E-value=3.4e+02 Score=19.83 Aligned_cols=43 Identities=28% Similarity=0.384 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
.++.++.+.+.++..++..+.++...|.....++......|..
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~ 48 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE 48 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777888888888888888888888777777776666654
No 158
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.79 E-value=3.6e+02 Score=25.09 Aligned_cols=68 Identities=9% Similarity=0.192 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
+.+.+|..+.-++.++....-.+.+++.+. ......+.++..+++.++.++.++-..++.|...+.++
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYD-QSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777755433332211110 01122466666666667666666666666666544433
No 159
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=20.75 E-value=3.4e+02 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
...+..+++++.++..++.......+.++++...-.
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~ 52 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEK 52 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888888877766543
No 160
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.73 E-value=3.5e+02 Score=19.77 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELK 139 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~ 139 (153)
+......+++++++.++.++..+.+..+.|++++.++....
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788888888888888888888888888877765443
No 161
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.70 E-value=2.2e+02 Score=17.57 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
.+.+++..+..++.+...|......|+
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666665555554
No 162
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=20.63 E-value=2.9e+02 Score=20.25 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 73 RKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 73 Rklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
+.|+++ ..+...|.++.+............-+++...+..+...+.+....+..+++.+..+.
T Consensus 48 ~rL~~I-~~lr~~G~~L~eI~~ll~~~~~~~~~~~~~~~~~~~~~i~~ki~~L~~l~~~L~~l~ 110 (120)
T TIGR02054 48 QRLRFV-RAAFEAGIGLGELARLCRALDAANGDDTAACLAVLRQLVEARREALAALEVQLAAMP 110 (120)
T ss_pred HHHHHH-HHHHHcCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 344556766554321110000011223333344444444444444555555544443
No 163
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=20.61 E-value=4.3e+02 Score=20.79 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=34.1
Q ss_pred hhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 63 SEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 63 ~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
.++-|.+|-.++|.++..++.-...| ...++..+-..|+..-.+|.-+.++...=.+.|
T Consensus 56 ~~LgrveEetkrLa~ireeLE~l~dP-----------~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEy 114 (159)
T PF04949_consen 56 AQLGRVEEETKRLAEIREELEVLADP-----------MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEY 114 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccc-----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34667888888899998888744333 333455555555555555554444444333333
No 164
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.24 E-value=4.2e+02 Score=20.92 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=54.1
Q ss_pred cCcHHHHHHHhhhccceeeecccccchhhhcccccccccccCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcc
Q psy15626 10 PEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQI 89 (153)
Q Consensus 10 ~E~A~~~V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i 89 (153)
+-+.-++|..|=.=|+|+--=+|.+-. .-.+.+-.. ..-++...+--+.+++++.++.-++..|......-
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGssn~-----YWsFps~~~----~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSSNY-----YWSFPSQAK----QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCeeE-----EEecChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345567777777778877665443211 111111111 12344556667788888899999999988764322
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15626 90 QENSTFPNAPNPREIIDLENHLERTESEILELS 122 (153)
Q Consensus 90 ~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~ 122 (153)
.... .....-..+.+++.++.++..++....
T Consensus 100 ~~~~--eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 100 EESE--EREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 000111355555555666555555443
No 165
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=20.23 E-value=3.1e+02 Score=20.61 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQ 146 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~ 146 (153)
..+-++..++.+++..+.+.+.....|+..-++|.-.-.+|.-|.
T Consensus 60 ~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAk 104 (120)
T COG4839 60 TKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAK 104 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHH
Confidence 467778889999999999999999999999999988888877654
No 166
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=20.19 E-value=3.2e+02 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 99 PNPREIIDLENHLERTESEILELSQN 124 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n 124 (153)
++...++++.++++++|.+|+++-.-
T Consensus 78 s~~~~l~~~~~~~~~~e~Rlr~mE~y 103 (118)
T PRK10697 78 SSSELLDEVDRELAAGEQRLREMERY 103 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999987653
No 167
>KOG0250|consensus
Probab=20.13 E-value=6.4e+02 Score=25.74 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
+..+++..++.+..++..+..-...|+..++++.
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554444444444444444444443
No 168
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.10 E-value=3.4e+02 Score=19.39 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
.++-++.+++.+...+..+.++...++++...+.
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555543
No 169
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.09 E-value=3.2e+02 Score=19.11 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHV 141 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~V 141 (153)
-+++++.++=..+..+...+..+.+.|......|.+...+
T Consensus 25 mEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 25 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777776666665544
No 170
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=20.08 E-value=5.3e+02 Score=24.33 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=57.1
Q ss_pred cCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 50 LNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 50 LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
|+.+-..++|.|-+++ ++++..+.-+-..+.+..++. ..-...+..++..++..+++-.++.+++..|+
T Consensus 341 l~e~e~~~vr~~e~eL---~el~~~~~~i~~~~~~~~~~y--------S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 341 LAETELGSVRKFEKEL---KELESVLDEILENIEAQEVAY--------SELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred cChhHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccccH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6777778888887665 455666666666665433321 12235788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q psy15626 130 SNYLELTELKHVLE 143 (153)
Q Consensus 130 ~~~~~l~E~~~VL~ 143 (153)
+.-.++.|.-.++.
T Consensus 410 kdEl~Are~l~~~~ 423 (570)
T COG4477 410 KDELEARENLERLK 423 (570)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777766655554
Done!