Query psy15626
Match_columns 153
No_of_seqs 112 out of 370
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 99.5 1.1E-13 3.7E-18 116.3 13.2 120 1-146 14-136 (357)
2 3oja_B Anopheles plasmodium-re 71.2 25 0.00087 30.2 9.5 85 50-149 500-585 (597)
3 2yy0_A C-MYC-binding protein; 70.6 8.4 0.00029 23.8 4.6 36 98-133 15-50 (53)
4 2b9c_A Striated-muscle alpha t 68.2 13 0.00044 27.5 6.0 51 66-131 73-123 (147)
5 2zqm_A Prefoldin beta subunit 67.8 9.1 0.00031 26.2 4.9 82 61-142 15-110 (117)
6 2akf_A Coronin-1A; coiled coil 63.2 16 0.00055 20.2 4.2 26 113-138 3-28 (32)
7 1l8d_A DNA double-strand break 61.6 27 0.00092 23.7 6.4 36 103-138 65-100 (112)
8 1fxk_A Prefoldin; archaeal pro 59.4 10 0.00034 25.6 3.7 40 99-138 62-101 (107)
9 2v66_B Nuclear distribution pr 56.3 46 0.0016 23.6 6.9 42 102-143 56-97 (111)
10 1m1j_C Fibrinogen gamma chain; 56.1 29 0.00098 29.8 6.8 29 55-83 30-58 (409)
11 2pnv_A Small conductance calci 49.7 13 0.00044 22.2 2.6 25 107-131 14-38 (43)
12 2v71_A Nuclear distribution pr 49.0 57 0.0019 25.2 6.9 42 102-143 109-150 (189)
13 1gd2_E Transcription factor PA 47.6 38 0.0013 22.0 4.9 37 102-138 29-65 (70)
14 2lw1_A ABC transporter ATP-bin 47.0 48 0.0016 21.9 5.5 63 63-127 19-81 (89)
15 1t2k_D Cyclic-AMP-dependent tr 42.2 58 0.002 20.0 6.0 35 103-137 23-57 (61)
16 3htk_A Structural maintenance 41.2 58 0.002 19.6 7.4 38 101-138 4-41 (60)
17 2er8_A Regulatory protein Leu3 41.0 31 0.0011 21.3 3.6 22 101-122 48-69 (72)
18 1kd8_A GABH AIV, GCN4 acid bas 40.8 51 0.0017 18.9 4.5 31 103-133 2-32 (36)
19 3okq_A BUD site selection prot 40.4 1.1E+02 0.0037 22.6 8.5 61 65-135 27-87 (141)
20 2wq1_A General control protein 40.0 50 0.0017 18.6 4.6 26 104-129 2-27 (33)
21 2oqq_A Transcription factor HY 39.1 60 0.002 19.2 6.0 31 102-132 3-33 (42)
22 4dzo_A Mitotic spindle assembl 38.5 74 0.0025 22.6 5.7 34 100-133 2-35 (123)
23 3m48_A General control protein 38.3 48 0.0017 18.6 3.6 25 104-128 2-26 (33)
24 3tkl_B LIDA protein, substrate 38.0 1E+02 0.0035 24.7 6.8 92 60-151 29-144 (267)
25 2yko_A LINE-1 ORF1P; RNA-bindi 37.9 63 0.0022 25.8 5.7 35 101-135 5-39 (233)
26 3rrk_A V-type ATPase 116 kDa s 37.9 1.3E+02 0.0043 24.2 7.8 41 102-142 226-267 (357)
27 2xv5_A Lamin-A/C; structural p 37.5 84 0.0029 20.5 7.0 42 102-143 5-46 (74)
28 1dh3_A Transcription factor CR 36.5 65 0.0022 19.7 4.5 27 103-129 23-49 (55)
29 4etp_A Kinesin-like protein KA 36.3 57 0.0019 27.6 5.5 32 104-135 5-36 (403)
30 2ke4_A CDC42-interacting prote 35.9 75 0.0026 21.8 5.2 20 66-85 15-34 (98)
31 1zme_C Proline utilization tra 35.8 21 0.00072 21.9 2.1 24 101-124 43-66 (70)
32 1kd8_B GABH BLL, GCN4 acid bas 35.6 63 0.0022 18.5 5.2 30 104-133 3-32 (36)
33 1fxk_C Protein (prefoldin); ar 35.5 1.1E+02 0.0038 21.2 7.0 44 103-146 2-45 (133)
34 1nkp_B MAX protein, MYC proto- 35.2 54 0.0019 21.2 4.2 32 102-133 47-78 (83)
35 3mov_A Lamin-B1; LMNB1, B-type 35.2 1E+02 0.0036 20.9 9.7 58 67-142 20-77 (95)
36 1uo4_A General control protein 34.5 64 0.0022 18.2 3.8 26 104-129 3-28 (34)
37 2zqm_A Prefoldin beta subunit 34.2 1E+02 0.0034 20.7 5.7 34 102-135 77-110 (117)
38 1r8d_A Transcription activator 34.2 35 0.0012 23.1 3.2 49 82-130 55-103 (109)
39 2wuj_A Septum site-determining 34.1 41 0.0014 20.7 3.3 33 103-135 21-53 (57)
40 3c3f_A Alpha/beta peptide with 33.9 65 0.0022 18.2 4.6 26 104-129 3-28 (34)
41 3ol1_A Vimentin; structural ge 33.7 85 0.0029 22.0 5.3 57 55-126 51-107 (119)
42 3ghg_A Fibrinogen alpha chain; 33.7 1E+02 0.0035 27.6 6.8 40 105-144 113-152 (562)
43 2wt7_A Proto-oncogene protein 33.6 86 0.0029 19.4 6.5 36 103-138 24-59 (63)
44 3ghg_A Fibrinogen alpha chain; 32.5 1E+02 0.0035 27.6 6.6 45 69-121 113-157 (562)
45 1nlw_A MAD protein, MAX dimeri 31.4 80 0.0027 20.6 4.5 31 103-133 48-78 (80)
46 4abx_A DNA repair protein RECN 31.4 1.5E+02 0.0052 21.6 6.7 14 102-115 122-135 (175)
47 2dgc_A Protein (GCN4); basic d 30.8 68 0.0023 20.1 4.0 28 103-130 31-58 (63)
48 3t98_B Nucleoporin NUP58/NUP45 30.5 1.3E+02 0.0043 20.5 5.6 19 66-84 12-30 (93)
49 1g6u_A Domain swapped dimer; d 30.4 74 0.0025 18.8 3.7 29 100-128 18-46 (48)
50 1jnm_A Proto-oncogene C-JUN; B 29.9 92 0.0031 19.1 4.5 33 103-135 23-55 (62)
51 2l5g_B Putative uncharacterize 28.9 93 0.0032 18.4 4.9 27 103-129 10-36 (42)
52 1a92_A Delta antigen; leucine 27.5 41 0.0014 20.6 2.3 26 60-85 8-33 (50)
53 1nkp_A C-MYC, MYC proto-oncoge 26.0 1.5E+02 0.005 19.6 5.5 34 102-135 52-85 (88)
54 1x8y_A Lamin A/C; structural p 25.9 1.4E+02 0.0049 19.6 7.0 40 103-142 29-68 (86)
55 2z5i_A TM, general control pro 24.8 1.2E+02 0.0041 18.3 5.3 32 102-133 12-43 (52)
56 1ci6_A Transcription factor AT 24.7 1.3E+02 0.0045 18.6 6.0 34 103-136 24-57 (63)
57 1gk4_A Vimentin; intermediate 24.1 1.5E+02 0.0053 19.3 6.9 41 103-143 27-67 (84)
58 2zdi_C Prefoldin subunit alpha 23.7 1.2E+02 0.0041 21.7 4.7 44 101-144 8-54 (151)
59 1a93_B MAX protein, coiled coi 23.7 60 0.002 18.4 2.4 19 102-120 14-32 (34)
60 3swy_A Cyclic nucleotide-gated 22.9 1.3E+02 0.0044 18.0 4.9 16 106-121 9-24 (46)
61 3c3g_A Alpha/beta peptide with 22.8 1.1E+02 0.0038 17.1 4.6 22 104-125 2-23 (33)
62 3o0z_A RHO-associated protein 22.7 2.5E+02 0.0085 21.2 6.9 42 103-144 91-132 (168)
63 2vz4_A Tipal, HTH-type transcr 22.6 45 0.0015 22.5 2.1 27 104-130 76-102 (108)
64 3tnu_B Keratin, type II cytosk 22.1 2.1E+02 0.007 20.0 6.9 42 102-143 75-116 (129)
65 3t98_B Nucleoporin NUP58/NUP45 22.0 98 0.0033 21.0 3.7 31 105-135 54-84 (93)
66 4h22_A Leucine-rich repeat fli 22.0 2.1E+02 0.0071 20.0 7.0 42 102-143 37-78 (103)
67 3tnu_A Keratin, type I cytoske 21.9 2.1E+02 0.0072 20.0 6.9 42 102-143 77-118 (131)
68 1gk6_A Vimentin; intermediate 21.7 1.5E+02 0.0051 18.2 6.5 26 104-129 9-34 (59)
69 2efr_A General control protein 21.5 2E+02 0.007 21.2 5.7 63 63-133 67-129 (155)
70 3iv1_A Tumor susceptibility ge 21.5 1.7E+02 0.006 19.3 4.7 30 107-136 44-73 (78)
71 3qao_A LMO0526 protein, MERR-l 21.4 84 0.0029 24.6 3.7 53 82-134 56-108 (249)
72 1pyi_A Protein (pyrimidine pat 21.4 1.4E+02 0.0048 19.1 4.4 24 68-91 50-73 (96)
73 1fzc_C Fibrin; blood coagulati 21.4 59 0.002 26.9 2.9 22 114-135 16-37 (319)
74 3pp5_A BRK1, protein brick1; t 21.3 52 0.0018 21.7 2.0 22 62-83 48-69 (73)
75 3mq7_A Bone marrow stromal ant 20.8 2.2E+02 0.0075 20.4 5.4 27 104-130 73-99 (121)
76 1s94_A S-syntaxin; three helix 20.7 2.2E+02 0.0075 20.6 5.8 68 56-124 36-103 (180)
77 2r2v_A GCN4 leucine zipper; co 20.7 1.3E+02 0.0043 17.0 4.6 26 104-129 3-28 (34)
78 1zke_A Hypothetical protein HP 20.6 2E+02 0.0067 19.2 6.2 58 67-124 6-74 (83)
79 1lwu_B Fibrinogen beta chain; 20.6 2.2E+02 0.0075 23.4 6.2 43 68-124 8-50 (323)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.53 E-value=1.1e-13 Score=116.32 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=101.9
Q ss_pred CceEEEEeccCcHHHHHHHhhhccceeeecccccchhhhcccccccccccCCCCChhh--hchh-hhhcchHHHHHHHHH
Q psy15626 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQ--RKFV-SEVRRCDELERKIRY 77 (153)
Q Consensus 1 M~L~qL~ip~E~A~~~V~eLGelG~vqF~D~~~~~~~~~~~~~~~~~~~LN~~v~~fq--R~fv-~evrRcdemeRklr~ 77 (153)
|+.++|++|.+.++++|.+||++|.|||+| +|++++.|+ ++|. +++++|+++.+++++
T Consensus 14 M~kv~l~~~~~~~~~vl~~L~~lg~vhi~d-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~ 74 (357)
T 3rrk_A 14 MEKLIVAGPKRLARELLAELQKAGVVHIDP-------------------LRPDELGEYRLSPTEEAELKRWEAVVSQAEQ 74 (357)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTCEEEEE-------------------ECGGGGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeEHHHHHHHHHHHHHcCcEEEEe-------------------ccccccccccCCccchHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999 8876 689999999999999
Q ss_pred HHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q psy15626 78 IEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQ 146 (153)
Q Consensus 78 l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~ 146 (153)
+...+.++..+.. .+....++++++.+.+++.++.++.+....|+.+..++.+.+.|+....
T Consensus 75 ~~~~L~~~~~~~~-------~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 75 SLTVVGLATVPSS-------KPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHTCCCCCCS-------SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccc-------cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 9999987642210 1112348888888999999999999999999999999988866666544
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.21 E-value=25 Score=30.15 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=52.6
Q ss_pred cCCCCChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 50 LNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 50 LN~~v~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
++.....+.+...+.-.+..++++++..+++++.+. ...++.++.+.++++.++.+..+..+.|+
T Consensus 500 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 500 LARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK---------------QKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh---------------hcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 444434444455555556666666676666666431 23567777888888888888888888888
Q ss_pred HHHHHH-HHHHHHHHHhcccc
Q psy15626 130 SNYLEL-TELKHVLEKTQTFF 149 (153)
Q Consensus 130 ~~~~~l-~E~~~VL~~~~~ff 149 (153)
+....+ .|.+..+.+++.=|
T Consensus 565 ~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 777776 45555555555433
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.63 E-value=8.4 Score=23.81 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 98 APNPREIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 98 ~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
.|+..+++.|..+...+..++.++.+..+.|++++.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467789999999999999999999998888888764
No 4
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=68.16 E-value=13 Score=27.55 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
++++++.|+|..++..+.++. .-.+..+..+..++.+|..+.+|+..|.-.
T Consensus 73 rKyeE~~RKl~~~E~dLerae---------------eRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 73 RKYEEVARKLVIIESDLERAE---------------ERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 467888888888888887642 356677888888888888888888887643
No 5
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.77 E-value=9.1 Score=26.19 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=50.6
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHcCCcccC-----CC---------CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHH
Q psy15626 61 FVSEVRRCDELERKIRYIEAEINKEGVQIQE-----NS---------TFPNAPNPREIIDLENHLERTESEILELSQNAI 126 (153)
Q Consensus 61 fv~evrRcdemeRklr~l~~ei~k~~i~i~~-----~~---------~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e 126 (153)
|-.--.++..+..++.-++.++......+.. .+ -+...+....+..|+.+.+.++.++..+.+..+
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666655544322111 10 011134445788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15626 127 NLKSNYLELTELKHVL 142 (153)
Q Consensus 127 ~L~~~~~~l~E~~~VL 142 (153)
.+.+.+.++....+-+
T Consensus 95 ~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 95 KLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888876654433
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=63.25 E-value=16 Score=20.19 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 113 RTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 113 ~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
++|.+++.++.-.+.|.++...|.|-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888887764
No 7
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.56 E-value=27 Score=23.70 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
.++..+.++..+..++.++......+.+....+...
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666655555443
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.45 E-value=10 Score=25.59 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 99 PNPREIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 99 ~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
+.......|+.+.+.++.++..+.+..+.+.+.+.++...
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788888999999999999999988888888877654
No 9
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.26 E-value=46 Score=23.57 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
..+-+||..-+.+|+.-+....+++.+..+|+..+|--..|.
T Consensus 56 ~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE 97 (111)
T 2v66_B 56 KYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLE 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999888776
No 10
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.10 E-value=29 Score=29.83 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=18.7
Q ss_pred ChhhhchhhhhcchHHHHHHHHHHHHHHH
Q psy15626 55 NAFQRKFVSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 55 ~~fqR~fv~evrRcdemeRklr~l~~ei~ 83 (153)
+-+++..-+.++.++++..+|.-+..++.
T Consensus 30 ~k~e~~V~~~l~~LE~~l~elsn~ts~v~ 58 (409)
T 1m1j_C 30 NKYRLTTDGELLEIEGLLQQATNSTGSIE 58 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777766655555
No 11
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=49.70 E-value=13 Score=22.17 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15626 107 LENHLERTESEILELSQNAINLKSN 131 (153)
Q Consensus 107 le~~l~~le~~l~~l~~n~e~L~~~ 131 (153)
+.++-+.+|.|+..+-...+.|...
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=49.03 E-value=57 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
..+-+||..-+.+|+..+....+.+.+..+++.++|-...|.
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999999999999888876
No 13
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.58 E-value=38 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
..|.+||.++..++.....++...+.|+.....|...
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766666666676666655443
No 14
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.97 E-value=48 Score=21.92 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=33.2
Q ss_pred hhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy15626 63 SEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAIN 127 (153)
Q Consensus 63 ~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~ 127 (153)
++=|.++.++.+|.-++.++....-.+-+++-+ ..++..+.++-.++..++.+|-++-...+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y--~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFF--SQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGG--GSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888877777776544333222100 112345555555555555555444444443
No 15
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.23 E-value=58 Score=19.98 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTE 137 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E 137 (153)
.+.+|+..++.++.+-.++......|+.....|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777766665543
No 16
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.19 E-value=58 Score=19.64 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
...+..++..+......+......++.++.+++.+.+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 41 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEK 41 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554443
No 17
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=41.01 E-value=31 Score=21.30 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELS 122 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~ 122 (153)
...+.+||.++..++..|..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887776543
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=40.85 E-value=51 Score=18.87 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
.|.+||..++.+..+-.++.+....|++-+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3677888888887777777776666665443
No 19
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=40.39 E-value=1.1e+02 Score=22.59 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=44.1
Q ss_pred hcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 65 VRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 65 vrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
|.|.|++.-.+.-|..-+...|+. |.+..+..+...+..+..+|..+.+.....+-.....
T Consensus 27 vtkVDDLQD~VE~LRkDV~~Rgvr----------P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKi 87 (141)
T 3okq_A 27 LSKVDDLQDVIEIMRKDVAERRSQ----------PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKT 87 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHH
Confidence 455666666666666666666663 6778888888888888888888888887777554443
No 20
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=39.99 E-value=50 Score=18.55 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
|.+||..++.+-.+..++.+....|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777777766666665555554444
No 21
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.10 E-value=60 Score=19.20 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNY 132 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~ 132 (153)
.++.+||++...++....++.+....|...-
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678888888888888888777776666543
No 22
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=38.53 E-value=74 Score=22.63 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=23.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 100 NPREIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 100 ~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
++.++.+++++++.++.+...+.+-...-...+.
T Consensus 2 ~~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 2 SSKEVAELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999988888888777776654444433
No 23
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.32 E-value=48 Score=18.62 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L 128 (153)
|.+||..++.+-.+-.++.+....|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455655555555444444444333
No 24
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=37.95 E-value=1e+02 Score=24.65 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=38.0
Q ss_pred chhhhhcchHHHHHHHHHHHHHHH----HcCCccc---CC---CCCCCCCCchhHHHHHHHHHHH--------------H
Q psy15626 60 KFVSEVRRCDELERKIRYIEAEIN----KEGVQIQ---EN---STFPNAPNPREIIDLENHLERT--------------E 115 (153)
Q Consensus 60 ~fv~evrRcdemeRklr~l~~ei~----k~~i~i~---~~---~~~~~~~~~~~id~le~~l~~l--------------e 115 (153)
+|-..|+.-++++.+|.-|+.|=. |++.--. .. .+.-.+.++.+|++.-+.+.+- +
T Consensus 29 ~~qen~~k~e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~~~se~~T~imEs~p~De 108 (267)
T 3tkl_B 29 RAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLTQLMEKHKGDE 108 (267)
T ss_dssp ----------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHHHHHHhcCcccH
Confidence 344445555566666666665533 2221111 00 1112245566666665555444 3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy15626 116 SEILELSQNAINLKSNYLELTELKHVLEKTQTFFHE 151 (153)
Q Consensus 116 ~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~~ff~~ 151 (153)
.+.+.+-.....+.-+...|.-...|++....||+.
T Consensus 109 eEa~kLlhKh~~~~~KlaNLQdl~dvh~geKsFfNa 144 (267)
T 3tkl_B 109 KTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNE 144 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEECT
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHhhhhhhhcc
Confidence 444555555666777888898999999999999975
No 25
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=37.91 E-value=63 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+.+|++|+.+..++.++.++.+..+...++...+
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~n 39 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRN 39 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888888877766665544333
No 26
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.90 E-value=1.3e+02 Score=24.21 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSN-YLELTELKHVL 142 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~-~~~l~E~~~VL 142 (153)
..+.++++++..++.++.++.+....+.+. ...|..+...+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l 267 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRA 267 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777766666 33344444433
No 27
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.50 E-value=84 Score=20.46 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
.+.+++...+..+|.++.++....+.....|.+|.-.|-.|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le 46 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777766666666666666655554443
No 28
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.49 E-value=65 Score=19.66 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
++++||.++..|+.+-..+......|.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777776666666555555544444
No 29
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.28 E-value=57 Score=27.57 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
++++++++..++.+..++....+.++..+.++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 30
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=35.87 E-value=75 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHc
Q psy15626 66 RRCDELERKIRYIEAEINKE 85 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k~ 85 (153)
+|+.-+.++|.-|+.+|.+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke 34 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKE 34 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999865
No 31
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.79 E-value=21 Score=21.92 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 101 PREIIDLENHLERTESEILELSQN 124 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n 124 (153)
...+++|+.++..+|..|.++...
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888999999999888877654
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.62 E-value=63 Score=18.46 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
|.+||..++.+-.+-.++.+....|++-+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 677777777777777777666666665443
No 33
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.45 E-value=1.1e+02 Score=21.20 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEKTQ 146 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~~~ 146 (153)
++.++.+...++..++..+.++...|+....++.+....|....
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778888999999999999999999988888888888777643
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.24 E-value=54 Score=21.24 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
.+|..|..+...++.++.++......|+.++.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666655544
No 35
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.17 E-value=1e+02 Score=20.85 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 67 RcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
....+|+.|+-++.... .++.++...+..++.++.++..........|..|.-.|-.|
T Consensus 20 ~~~~LE~~l~e~E~~~~------------------~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 20 ESRACLERIQELEDLLA------------------KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp CCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887664 25566666666666666666666655555555555555444
No 36
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.49 E-value=64 Score=18.22 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
|.+||..++.+-.+-.++.+....|+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45666666666555555544444443
No 37
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.23 E-value=1e+02 Score=20.68 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
..++.++..+..++..+..+.+....++.++..+
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777877777777777777777665
No 38
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=34.17 E-value=35 Score=23.05 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=26.7
Q ss_pred HHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15626 82 INKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKS 130 (153)
Q Consensus 82 i~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~ 130 (153)
+...|.++.+.......+.......++++++.++.++.++....+.|..
T Consensus 55 l~~~G~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 55 FKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp HHHTTCCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665543211111122234566777777777777777666655554
No 39
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.10 E-value=41 Score=20.66 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
..+++.+=|+++...+..+......|+++...|
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555554444
No 40
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.95 E-value=65 Score=18.15 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
|.+||..++.+-.+-.++.+....|+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66677777666666555555554444
No 41
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=33.74 E-value=85 Score=21.96 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=35.3
Q ss_pred ChhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHH
Q psy15626 55 NAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAI 126 (153)
Q Consensus 55 ~~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e 126 (153)
--|..+|-.++..+..+|.-+.-+...+.... -.--+||.+++.+..+|.=+.++++
T Consensus 51 edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~---------------l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 51 MRLREKLQEEMLQREEAENTLQSFRQDVDNAS---------------LARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888777777766664321 1233466666666666655555543
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.72 E-value=1e+02 Score=27.59 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
++|+.++..++.+|..+.+++..|+.++.++.....=|+.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888888888888777666555543
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.59 E-value=86 Score=19.41 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~ 138 (153)
.+++|+.+++.++.+-..+......|......|...
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777666665443
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.55 E-value=1e+02 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy15626 69 DELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILEL 121 (153)
Q Consensus 69 demeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l 121 (153)
+||+|++.||+..|...--.| +.....|.++-.++.+||..|--.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnI--------rvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHI--------QLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777775310000 112334555555555666555444
No 45
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=31.40 E-value=80 Score=20.65 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
+|..|+....++..+..++....+.|+.++.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666666666655544
No 46
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=31.38 E-value=1.5e+02 Score=21.60 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTE 115 (153)
Q Consensus 102 ~~id~le~~l~~le 115 (153)
..++++++++..+.
T Consensus 122 ~rL~~ie~RL~~l~ 135 (175)
T 4abx_A 122 EALDRVEARLSALS 135 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 47
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.79 E-value=68 Score=20.10 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKS 130 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~ 130 (153)
.+++|+.++..++.+-..+......|+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666555555555444443
No 48
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.54 E-value=1.3e+02 Score=20.46 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=12.5
Q ss_pred cchHHHHHHHHHHHHHHHH
Q psy15626 66 RRCDELERKIRYIEAEINK 84 (153)
Q Consensus 66 rRcdemeRklr~l~~ei~k 84 (153)
+..+++|.+|.....+|..
T Consensus 12 ~lv~~fe~rL~~Yr~~Iee 30 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEE 30 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777654
No 49
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.44 E-value=74 Score=18.75 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15626 100 NPREIIDLENHLERTESEILELSQNAINL 128 (153)
Q Consensus 100 ~~~~id~le~~l~~le~~l~~l~~n~e~L 128 (153)
++.++-.+|.++.-+|..+..+....+.|
T Consensus 18 speelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 18 SPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777776666655555444
No 50
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.92 E-value=92 Score=19.13 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+++|+..+..++.+-.++......|+.....|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666665554443
No 51
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.93 E-value=93 Score=18.36 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
.|+.+..++.+.+..|.++......|.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555544443
No 52
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=27.53 E-value=41 Score=20.59 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=21.9
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHc
Q psy15626 60 KFVSEVRRCDELERKIRYIEAEINKE 85 (153)
Q Consensus 60 ~fv~evrRcdemeRklr~l~~ei~k~ 85 (153)
.||+.=++.+++||.||-....|++.
T Consensus 8 qWv~~Rkk~eeler~lrk~kk~iKkl 33 (50)
T 1a92_A 8 QWVSGRKKLEELERDLRKLKKKIKKL 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777789999999999999888764
No 53
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.05 E-value=1.5e+02 Score=19.63 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+|..|+.+...+..++.++..-...|+.++.+|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666666666665544
No 54
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.89 E-value=1.4e+02 Score=19.55 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVL 142 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL 142 (153)
.+.++...+..++.++.++..........|..|.-.|--|
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666666666666666666555555555555544443
No 55
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.81 E-value=1.2e+02 Score=18.30 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
+.+..|+..++++|.++..-...+..+...+.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35566777777777777766666666655543
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.72 E-value=1.3e+02 Score=18.64 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
.+.+++.+++.++.+-.++..-...|+.....|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777766666666666666555543
No 57
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.09 E-value=1.5e+02 Score=19.25 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
.+.++...+..++.++.++........+.|..|.-.|--|.
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld 67 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55666666777777777666666666666666655554443
No 58
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.71 E-value=1.2e+02 Score=21.69 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHH
Q psy15626 101 PREIIDLENHLERTESEILELSQNAINL---KSNYLELTELKHVLEK 144 (153)
Q Consensus 101 ~~~id~le~~l~~le~~l~~l~~n~e~L---~~~~~~l~E~~~VL~~ 144 (153)
+..+.++.+.+.++..++..+.++...| ...+.++.+....|..
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~ 54 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKK 54 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578889999999999999999999999 5555555555555443
No 59
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.69 E-value=60 Score=18.36 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILE 120 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~ 120 (153)
.+|+++..+-..|+.+++.
T Consensus 14 qDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4677777777777766654
No 60
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.93 E-value=1.3e+02 Score=17.95 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15626 106 DLENHLERTESEILEL 121 (153)
Q Consensus 106 ~le~~l~~le~~l~~l 121 (153)
.||..++-+..++..+
T Consensus 9 ~Le~~ld~LqTr~ArL 24 (46)
T 3swy_A 9 QLGSSLDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 61
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.82 E-value=1.1e+02 Score=17.11 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy15626 104 IIDLENHLERTESEILELSQNA 125 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~ 125 (153)
|.+||..++.+-.+=.++.+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555544444333333
No 62
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.70 E-value=2.5e+02 Score=21.16 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15626 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144 (153)
Q Consensus 103 ~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~~ 144 (153)
.+-+++.++..+..++..+..+...+......|.|...-|++
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888888888888887777766
No 63
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=22.61 E-value=45 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKS 130 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~ 130 (153)
...++++++.++.++.++....+.|..
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766666655544
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.11 E-value=2.1e+02 Score=19.98 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
..+.++...+..+|.++.++..........|..|...|--|.
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777888888888887777777777777776665554
No 65
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.97 E-value=98 Score=21.02 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15626 105 IDLENHLERTESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 105 d~le~~l~~le~~l~~l~~n~e~L~~~~~~l 135 (153)
-.+-+.+--+-.++-++-+..+.+++.|..+
T Consensus 54 ~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 54 QKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 66
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.97 E-value=2.1e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
..+.++++.+.++.++.++...-.+.+++....|......|+
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777778888888888888888877776665544443
No 67
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.87 E-value=2.1e+02 Score=20.01 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15626 102 REIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLE 143 (153)
Q Consensus 102 ~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~l~E~~~VL~ 143 (153)
..+.++...+..+|.++.++..........|..|...|--|.
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld 118 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLE 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778888888777777777777777766665553
No 68
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.66 E-value=1.5e+02 Score=18.16 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
+..+++++.++..++..+...++.|-
T Consensus 9 i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 9 VEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444444444443
No 69
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.45 E-value=2e+02 Score=21.24 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=35.8
Q ss_pred hhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15626 63 SEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYL 133 (153)
Q Consensus 63 ~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~ 133 (153)
+.-.|-|..+.+|+.+...++.+...... ..+.+..|+..+++++.++..-...+..+...+.
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~--------AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEF--------AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777644321100 1245666666777777666666666655554443
No 70
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.45 E-value=1.7e+02 Score=19.31 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15626 107 LENHLERTESEILELSQNAINLKSNYLELT 136 (153)
Q Consensus 107 le~~l~~le~~l~~l~~n~e~L~~~~~~l~ 136 (153)
|+.-+.+++.+-.++.+|.+.|+....+|.
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666777777777776666653
No 71
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=21.44 E-value=84 Score=24.59 Aligned_cols=53 Identities=6% Similarity=0.012 Sum_probs=28.7
Q ss_pred HHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15626 82 INKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLE 134 (153)
Q Consensus 82 i~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n~e~L~~~~~~ 134 (153)
+...|+++.+.......+.......|+.++..++.++.++......|.+....
T Consensus 56 lr~~G~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~ 108 (249)
T 3qao_A 56 FKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKN 108 (249)
T ss_dssp HHHTTCCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665443211112223345567777777777777766666666554443
No 72
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.40 E-value=1.4e+02 Score=19.13 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCcccC
Q psy15626 68 CDELERKIRYIEAEINKEGVQIQE 91 (153)
Q Consensus 68 cdemeRklr~l~~ei~k~~i~i~~ 91 (153)
.+.+|.+|..|+..|...++.+..
T Consensus 50 ~~~Le~rl~~le~~l~~~~~~~~~ 73 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKEYGVDPTK 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 567899999999999998876543
No 73
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.39 E-value=59 Score=26.95 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy15626 114 TESEILELSQNAINLKSNYLEL 135 (153)
Q Consensus 114 le~~l~~l~~n~e~L~~~~~~l 135 (153)
.+.++..+.+.++.++.+..+|
T Consensus 16 ~~~~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 16 HDSSIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 74
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=21.25 E-value=52 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.0
Q ss_pred hhhhcchHHHHHHHHHHHHHHH
Q psy15626 62 VSEVRRCDELERKIRYIEAEIN 83 (153)
Q Consensus 62 v~evrRcdemeRklr~l~~ei~ 83 (153)
..-=.|+..+||+|.|||+.+.
T Consensus 48 a~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 48 SDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334577889999999999885
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.79 E-value=2.2e+02 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLKS 130 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~~ 130 (153)
+.+++.+|..+...|.+.....+.|++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444443
No 76
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.71 E-value=2.2e+02 Score=20.63 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=40.4
Q ss_pred hhhhchhhhhcchHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 56 AFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQN 124 (153)
Q Consensus 56 ~fqR~fv~evrRcdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n 124 (153)
+|--.|.++|.-+.+--.+|+-...+|.+..-.+..... ........++.+..++.++...++...+.
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~-~~~~~k~~le~l~~~i~~~a~~ik~~Lk~ 103 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQ-TDDQMKEELEELMTDIKRTANKVRGKLKT 103 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566679999999998888888888888765433222111 11222356776666666666554443333
No 77
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.66 E-value=1.3e+02 Score=16.98 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15626 104 IIDLENHLERTESEILELSQNAINLK 129 (153)
Q Consensus 104 id~le~~l~~le~~l~~l~~n~e~L~ 129 (153)
|.++|..++.+-++...+.+....|+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55666666666555555544444443
No 78
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.63 E-value=2e+02 Score=19.20 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHHHH----HcCCccc------CC-CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 67 RCDELERKIRYIEAEIN----KEGVQIQ------EN-STFPNAPNPREIIDLENHLERTESEILELSQN 124 (153)
Q Consensus 67 RcdemeRklr~l~~ei~----k~~i~i~------~~-~~~~~~~~~~~id~le~~l~~le~~l~~l~~n 124 (153)
|+|.+-+.+.-...+|+ -++|... .. -+.|...+...+-++.++++++...+..+|+-
T Consensus 6 rid~ilk~IE~~q~eI~~lL~~AkiSl~DyImiKRGS~DmPe~L~~~~~~QideeV~~LKe~IdaLNK~ 74 (83)
T 1zke_A 6 KIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKI 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhheeccCccCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555554 3444332 22 25666666778888888888887777666553
No 79
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.63 E-value=2.2e+02 Score=23.41 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15626 68 CDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQN 124 (153)
Q Consensus 68 cdemeRklr~l~~ei~k~~i~i~~~~~~~~~~~~~~id~le~~l~~le~~l~~l~~n 124 (153)
=+++|.+.++++..+... -+..|..|+..++++..+|.++...
T Consensus 8 ~~~le~~~~~ik~~~~~~--------------~~~~I~~Lq~~le~L~~KI~~LE~~ 50 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIEST--------------VAGSLRSMKSVLEHLRAKMQRMEEA 50 (323)
T ss_dssp HHHHHHHTHHHHHHHHTT--------------THHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999998888521 1235555555555555555444333
Done!