RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15626
(153 letters)
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 100 bits (252), Expect = 1e-25
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 19/135 (14%)
Query: 17 VSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIR 76
V LGE G+VQ RD LN ++AFQRKFV+EVRRCDE+ERK+R
Sbjct: 1 VDALGELGLVQIRD-------------------LNEDVSAFQRKFVNEVRRCDEVERKLR 41
Query: 77 YIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELT 136
+E++I K G+ +++ P+ P +E +DLE + E+EI E+ +N +L+ EL
Sbjct: 42 KLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELE 101
Query: 137 ELKHVLEKTQTFFHE 151
E +VL++ ++F E
Sbjct: 102 EWLNVLDEEKSFLDE 116
>gnl|CDD|238409 cd00794, NOS_oxygenase_prok, Nitric oxide synthase (NOS)
prokaryotic oxygenase domain. NOS produces nitric oxide
(NO) by catalyzing a five-electron heme-based oxidation
of a guanidine nitrogen of L-arginine to L-citrulline
via two successive monooxygenation reactions producing
N(omega)-hydroxy-L-arginine (NHA) as an intermediate.
Nitric oxide synthases are homodimers. Most prokaryotes
produce NO as a byproduct of denitrification, using a
completely different set of enzymes than NOS. However,
a few prokaryotes also have a NOS, consisting solely of
the NOS oxygenase domain. Prokaryotic NOS binds to the
substrate L-Arg, zinc, and to the cofactors heme and
tetrahydrofolate.
Length = 353
Score = 30.9 bits (70), Expect = 0.24
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 50 LNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEG 86
L AF E+ EL +++ +E+EI++ G
Sbjct: 2 LFKEARAFLTNMYEELGETGELNKRLAAVESEIDETG 38
>gnl|CDD|219955 pfam08657, DASH_Spc34, DASH complex subunit Spc34. The DASH
complex is a ~10 subunit microtubule-binding complex
that is transferred to the kinetochore prior to mitosis.
In Saccharomyces cerevisiae DASH forms both rings and
spiral structures on microtubules in vitro. Components
of the DASH complex, including Dam1, Duo1, Spc34, Dad1
and Ask1, are essential and connect the centromere to
the plus end of spindle microtubules.
Length = 255
Score = 30.6 bits (69), Expect = 0.27
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 54 MNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQ------ENSTFPNAPNPREIIDL 107
+ + K + R +EL I +EAEI ++ Q++ + + + + + ID+
Sbjct: 174 LPGAREKIETLRDRYNELSESIAELEAEIAEQKRQLEIMNISSSSPSSDTSESEEDEIDI 233
Query: 108 ENHLERTESEILELSQNAINLK 129
+ + + E EI EL + L+
Sbjct: 234 DELIRKEEEEIRELERQLRQLE 255
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 29.6 bits (67), Expect = 0.67
Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 15 SSVSTLGEAGIVQFRDVSITLD-----TQFNRFQEERPMC--LNSRMNAFQRKFVSEVRR 67
++ L + G+V D+ + + + L S + + R R
Sbjct: 20 PVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGR 79
Query: 68 CDELERKIRYIEAEINKEGVQIQENSTFPNAPNP--REIIDLENHLERTESEILEL 121
L ++ +EAE+ I+ F + R++ + + L+ ++ +L
Sbjct: 80 LFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDL 135
Score = 26.9 bits (60), Expect = 5.2
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 56 AFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTE 115
A F + ++LE + E +++ E + + E++D ++ E
Sbjct: 23 AELHDF--GLVHLEDLEEGEKG---LKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLE 77
Query: 116 SEILELSQNAINLKSNYLELTELKHVLEKT 145
+ L + L++ L E+ EK
Sbjct: 78 GRLFILPEEVEKLEAELKSLEEVIKPAEKF 107
>gnl|CDD|216019 pfam00609, DAGK_acc, Diacylglycerol kinase accessory domain.
Diacylglycerol (DAG) is a second messenger that acts as
a protein kinase C activator. This domain is assumed to
be an accessory domain: its function is unknown.
Length = 157
Score = 28.7 bits (65), Expect = 0.72
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 30 DVSITLDTQFNRFQEERPMCLNSRM-NAFQ------RKFVSEVRRCDELERKIRYIEAEI 82
D I L F+R +EE P NSR+ N +K + R C L K+ E+
Sbjct: 11 DARIALG--FHRLREEHPELFNSRLKNKLIYGKFGFKKMLQ--RSCKNLIEKVEL---EV 63
Query: 83 NKEGVQIQENS 93
+ + V + +
Sbjct: 64 DGKDVPLPSSL 74
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 29.0 bits (66), Expect = 0.80
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 52 SRMNAFQRKFVSEVRRCDELERKIRYIEAEINK 84
R+ A + + + +LE K+R +EAE K
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEK 33
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 28.6 bits (64), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 76 RYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERT 114
++ E+ KEGV T A +I ++ ERT
Sbjct: 67 EFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERT 105
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 280
Score = 28.2 bits (63), Expect = 1.8
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 70 ELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLEN--HLERTESE--------IL 119
E ERK IEAE + +I + I ++E+ L R +++
Sbjct: 190 ETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKAKADAEYYTAQK 249
Query: 120 ELSQNAINLKSNYLELTELKHVLEKTQTFF 149
E N + L YLEL + + + ++ +F
Sbjct: 250 EAEANKLKLTPEYLELMKYEAIAANSKIYF 279
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 27.7 bits (62), Expect = 2.7
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 35 LDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENST 94
L+ + + E L SR+ + + + + +LE +I + EI + +++
Sbjct: 356 LEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE---- 410
Query: 95 FPNAPNPREIIDLENHLERTESEILELSQNAINLKSNYL--ELTELKHVLEKTQT 147
LE+ ER + EI EL + + L EL EL+ LE+ Q
Sbjct: 411 -----------RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 27.6 bits (62), Expect = 3.0
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 32/133 (24%)
Query: 15 SSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERK 74
+ L E G+V D+ L + R +L
Sbjct: 20 EVLEALHELGVVHIEDLKEELSNERLRKLRSLLT---------------------KLSEA 58
Query: 75 IRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERT----ESEILELSQNAINLKS 130
+ + + + K +E + + + +L +E E EI EL + L++
Sbjct: 59 LDKLRSYLPKLNPLREEKKK----VSVKSLEELIKDVEEELEKIEKEIKELEEEISELEN 114
Query: 131 NYLELTELKHVLE 143
E+ EL+ +E
Sbjct: 115 ---EIKELEQEIE 124
>gnl|CDD|225901 COG3366, COG3366, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 311
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 7 FIQPEAAYSSVSTLGEAGIVQFRDVSITL 35
F+ P A S +S + G + R+V +
Sbjct: 64 FVSPTAGNSMLSEFYKEGKLNEREVIVAS 92
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.0 bits (60), Expect = 4.8
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 43 QEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPR 102
E R + ++N + + EL+ + ++ +I +I+ +
Sbjct: 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK------- 862
Query: 103 EIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144
+LE LE E+ + +L +LK EL LE+
Sbjct: 863 -KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
>gnl|CDD|215010 smart01070, CDC37_M, Cdc37 Hsp90 binding domain. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domains
corresponds to the Hsp90 chaperone (Heat shocked protein
90) binding domain of Cdc37. It is found between the N
terminal Cdc37 domain which is predominantly involved in
kinase binding, and the C terminal domain of Cdc37 whose
function is unclear.
Length = 155
Score = 26.6 bits (59), Expect = 4.8
Identities = 4/42 (9%), Positives = 11/42 (26%)
Query: 39 FNRFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEA 80
F + + + Q +F R + ++
Sbjct: 114 FQKIKTPSHPAKEGFLEDVQSEFEHIKTRVRIIAQEQAEEAM 155
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 26.5 bits (59), Expect = 5.1
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 67 RCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESE---ILELSQ 123
R EL++++ ++ E+ + Q+ E N +E+ LE LER + E I +LS
Sbjct: 67 RLPELQQELAELQEELAELQEQLAELQQ-ENQELKQELSTLEAELERLQKELARIKQLSA 125
Query: 124 NAINLKSNYLELTELKHVLEKT 145
NAI L EL E L++
Sbjct: 126 NAIELDEENRELREELAELKQE 147
>gnl|CDD|223776 COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport
and metabolism].
Length = 240
Score = 26.2 bits (58), Expect = 6.7
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 70 ELERKIRYIEAEINKEGVQIQENSTF------PNAPNPREI---IDLENHLERTESEILE 120
EL ++ ++ +I+ +I+E + P A + R I I + LER E +E
Sbjct: 48 ELAEEVIELDEKIDDLEAEIEEEAIRLIALQQPVASDLRLIISIIKISADLERIGDEAVE 107
Query: 121 LSQNAINLKSNYLEL 135
+++NAI L+S+ +L
Sbjct: 108 IAKNAIVLQSDEPDL 122
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 26.6 bits (60), Expect = 7.1
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 78 IEAEINKEGVQIQ-ENSTF 95
IEA KEGV+IQ EN T
Sbjct: 338 IEA---KEGVKIQNENQTL 353
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex
component.
Length = 233
Score = 26.1 bits (58), Expect = 8.2
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 69 DELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEI--LEL 121
DEL ++I +EAE+ VQ ++ +A I +LE LER + I LEL
Sbjct: 132 DELNKQIELLEAEVESLSVQRKKRKA--DAAKQERIAELEELLERHKFHISKLEL 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.366
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,491,622
Number of extensions: 667399
Number of successful extensions: 927
Number of sequences better than 10.0: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 91
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)