RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15626
(153 letters)
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 71.3 bits (174), Expect = 1e-15
Identities = 21/153 (13%), Positives = 37/153 (24%), Gaps = 23/153 (15%)
Query: 1 MALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCLNSRMNAFQRK 60
M + A ++ L +AG+V L R
Sbjct: 14 MEKLIVAGPKRLARELLAELQKAGVVHIDP-------------------LRPDELGEYRL 54
Query: 61 FVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILE 120
+E E + E + G+ + P + + E L S
Sbjct: 55 SPTEEAELKRWEAVVSQAEQSLTVVGLATVP----SSKPFTGSLEEAEAVLRPVASRAEV 110
Query: 121 LSQNAINLKSNYLELTELKHVLEKTQTFFHEPN 153
L + L+ + EK H +
Sbjct: 111 LGKERAALEEEIQTIELFGKAAEKLAALAHGLD 143
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.047
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 50 LNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLEN 109
S ++ + + E + ELE+ R +E E + QI E +I +L+
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ--------AQIAELKA 1088
Query: 110 HLERTESEILELSQNAINLKSNYLELTELKHVLEK 144
L + E E+ + S + LE
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123
Score = 26.0 bits (57), Expect = 7.4
Identities = 12/95 (12%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 50 LNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLEN 109
L ++ + + E R +L+ + + ++ ++ Q++E L+
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE--------AARQKLQL 976
Query: 110 HLERTESEILELSQNAINLKSNYLELTELKHVLEK 144
+ +I ++ + + ++ +LT+ + +LE+
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.059
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 53 RMNAFQRKFVSEVRRCDE--LERKIRYIEAEINKEGVQIQENSTFPNAPNPRE-IIDLEN 109
RM F+ F+ D LE+KIR+ N G +T + I D +
Sbjct: 489 RMTLFRMVFL------DFRFLEQKIRHDSTAWNASG---SILNTLQQLKFYKPYICDNDP 539
Query: 110 HLERTESEILE-LSQNAINL-KSNYLELTEL 138
ER + IL+ L + NL S Y +L +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B
2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B
3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Length = 328
Score = 29.8 bits (67), Expect = 0.28
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 70 ELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESEILELSQNAINLK 129
+ E + +E+ K + I E N+ P + L + LE S+I +L +
Sbjct: 1 DNENVVNEYSSELEKHQLYIDETV---NSNIPTNLRVLRSILENLRSKIQKLESDVSAQM 57
Query: 130 SN 131
Sbjct: 58 EY 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.0
Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 61/172 (35%)
Query: 10 PEAAYSSVSTLGEAGIVQFRDV----------------SITLDTQFNRF---------QE 44
P A++ S L E QF + L +F +
Sbjct: 23 PTASFFIASQLQE----QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 45 ERPMCLNSRMNAFQRKFVS--EV----------RRCDELERK--IR-YIEAEINKEGVQI 89
+ LN + F+ ++ ++ ++ K I+ YI A +I
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA-------RI 131
Query: 90 QENSTFPNAPNPREIIDLENHLERTESEILEL--SQNAINLKSNYL-ELTEL 138
F N L + ++++ + Q + +Y EL +L
Sbjct: 132 MAKRPFDKKSNSA----LFRAVGEGNAQLVAIFGGQGNTD---DYFEELRDL 176
Score = 27.3 bits (60), Expect = 2.6
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 65/128 (50%)
Query: 86 GVQIQENSTFPN-----------------APNP--------REIIDLENHLERTESEILE 120
GV+ E +PN P+P +E +++++ +T S +
Sbjct: 307 GVRCYE--AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNSHLPA 362
Query: 121 LSQNAINLK---SNY------LELTELKHVLEKT-------QT--------------F-- 148
Q I+L N L L L K Q+ F
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 149 ----FHEP 152
FH
Sbjct: 423 VASPFHSH 430
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.2 bits (63), Expect = 1.2
Identities = 11/104 (10%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 41 RFQEERPMCLNSRMNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPN 100
+ + + K + R+ DE ++ + + ++N + +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET------- 962
Query: 101 PREIIDLENHLERTESEILELSQNAINLKSNYLELTELKHVLEK 144
++ L +E E + ++L+ +L + H +
Sbjct: 963 -EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 27.8 bits (62), Expect = 1.4
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 102 REIIDLENHLERTESEILELSQNAINLKS---NYLELTELKHVLEKTQTFFHEP 152
+E +L TE EI L Q L S Y+ + K E+ +F E
Sbjct: 66 KEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNYKLHPEEQISFTSEE 119
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 1.9
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 68 CDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLERTESE 117
+ L I +I G+ ++ P A P + I+LE+ ++E
Sbjct: 546 VEAL---IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFA 592
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 59 RKFVSEVRRCDELERKIRYIEAEINKEGVQIQEN 92
+ V++VR LE +I +E + K +++
Sbjct: 341 HRQVAKVRNLPRLEERIAALEKLVQKLEALSEQH 374
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 26.5 bits (59), Expect = 4.6
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 58 QRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENS 93
+K + +R+ D++ R+++ +E + +S
Sbjct: 335 WKKSAARIRQLDDMARRLQQLEKRLAAVTSSGDASS 370
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 26.0 bits (58), Expect = 5.7
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 59 RKFVSEVRRCDELERKIRYIEAEINKE 85
RK + V D++ ++++ +E ++N++
Sbjct: 314 RKTAALVMNIDDMSKRLKSLERKVNQQ 340
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 25.6 bits (57), Expect = 8.1
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 4/18 (22%)
Query: 78 IEAEINKEGVQIQ-ENST 94
+EA KEGVQIQ EN T
Sbjct: 349 VEA---KEGVQIQNENQT 363
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics,
unknown function, PSI-2, protein structure initiative;
2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Length = 171
Score = 25.3 bits (55), Expect = 9.0
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 65 VRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLE 112
+ ++RK+ IEA++N+ + ++ +AP +LE+ +
Sbjct: 22 LAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVA 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.366
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,143,947
Number of extensions: 114936
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 48
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)