RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15626
         (153 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.1 bits (59), Expect = 1.2
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 59 RKFVSEVRRCDELERKIRYIEAEINKEGVQIQENST 94
            F+S++R C   E +I+ I  E+     + + +  
Sbjct: 6  AVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKA 41


>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 324

 Score = 25.3 bits (54), Expect = 3.9
 Identities = 8/36 (22%), Positives = 20/36 (55%)

Query: 64  EVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAP 99
           E+++ D L + +R+I   +  +G ++  ++  P  P
Sbjct: 284 EMKQLDALNKNLRFIVPMLTVDGKRVPRDAGHPLYP 319


>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and
           (Sus scrofa) [TaxId: 9606]}
          Length = 174

 Score = 24.2 bits (52), Expect = 7.6
 Identities = 4/63 (6%), Positives = 17/63 (26%)

Query: 54  MNAFQRKFVSEVRRCDELERKIRYIEAEINKEGVQIQENSTFPNAPNPREIIDLENHLER 113
              F    V +    +E++++ + +   ++ +   I              +   +     
Sbjct: 21  CRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHF 80

Query: 114 TES 116
              
Sbjct: 81  VGM 83


>d2f22a1 a.213.1.2 (A:1-141) Hypothetical protein BH3987 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 141

 Score = 23.9 bits (51), Expect = 8.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 97  NAPNPREIIDLENHLERTESEILELSQNAINLKSNYLELTEL 138
            +   R + +LE  +E    E  + + N+I +  NYL + EL
Sbjct: 66  ASDEHRLLDELERSMEELVFEFKQTTFNSIKMGENYLSIMEL 107


>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 62

 Score = 22.8 bits (49), Expect = 8.7
 Identities = 3/22 (13%), Positives = 10/22 (45%)

Query: 44 EERPMCLNSRMNAFQRKFVSEV 65
          ++  +     +N+  R  V ++
Sbjct: 16 KKMQLEFPPSLNSHDRLRVHQI 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,180
Number of extensions: 22025
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 12
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)