Query psy15627
Match_columns 77
No_of_seqs 104 out of 271
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:33:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 98.8 1.2E-09 4.3E-14 80.1 2.9 47 2-48 6-52 (357)
2 1g0y_I Antagonist peptide AF10 57.4 0.98 3.4E-05 23.2 -1.3 17 49-65 2-18 (26)
3 3or1_B Sulfite reductase beta; 55.1 3.8 0.00013 30.9 1.0 46 19-64 334-384 (386)
4 2ns1_B Nitrogen regulatory pro 39.5 24 0.00083 22.0 2.8 28 7-34 2-29 (116)
5 3bzq_A Nitrogen regulatory pro 39.3 26 0.00089 21.6 2.9 27 8-34 1-27 (114)
6 2o66_A PII protein; regulation 38.6 34 0.0012 22.4 3.5 32 3-34 6-37 (135)
7 3ce8_A Putative PII-like nitro 32.2 40 0.0014 22.0 3.0 28 7-34 20-48 (120)
8 2eg2_A Nitrogen regulatory pro 29.9 49 0.0017 20.3 3.1 25 10-34 1-25 (112)
9 1vfj_A Nitrogen regulatory pro 28.4 54 0.0018 20.2 3.1 25 10-34 1-25 (116)
10 1hwu_A PII protein; herbaspiri 27.9 56 0.0019 19.9 3.1 25 10-34 1-25 (112)
11 3t9z_A GLNK3, nitrogen regulat 27.2 56 0.0019 20.8 3.1 25 10-34 1-25 (118)
12 2gw8_A PII signal transduction 26.9 53 0.0018 20.2 2.8 26 9-34 2-27 (114)
13 3ncq_A Nitrogen regulatory pro 26.8 60 0.002 20.7 3.2 25 10-34 1-25 (119)
14 3euh_C MUKE, chromosome partit 25.5 46 0.0016 24.6 2.6 38 19-70 152-189 (234)
15 3mhy_A PII-like protein PZ; PI 24.4 67 0.0023 20.0 3.0 25 10-34 1-25 (112)
16 4aff_A Nitrogen regulatory pro 24.2 70 0.0024 20.2 3.1 25 10-34 1-25 (116)
17 2j9c_A GLNK1, hypothetical nit 23.5 62 0.0021 20.2 2.7 25 10-34 3-27 (119)
18 3l7p_A Putative nitrogen regul 21.0 80 0.0028 19.9 2.9 25 10-34 3-27 (115)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=98.83 E-value=1.2e-09 Score=80.10 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=38.4
Q ss_pred CCcccccCCceEEEEecCccHHHHHHHhhcccceeEeecCCCCCccc
Q psy15627 2 GAMFRSEEMALCQLFIQPEAAYSSVSTLGEAGIVQFRDEERPMCVSS 48 (77)
Q Consensus 2 ~slfRSE~M~l~qLiip~E~A~d~V~eLGeLGlVQF~DLN~~v~afq 48 (77)
|.|+|-|+|+.++|+.|.+.+.+++++|+++|+|||+|+|++++.|+
T Consensus 6 ~~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~ 52 (357)
T 3rrk_A 6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEY 52 (357)
T ss_dssp --------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGG
T ss_pred CCCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccc
Confidence 67999999999999999999999999999999999999999999988
No 2
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=57.44 E-value=0.98 Score=23.22 Aligned_cols=17 Identities=24% Similarity=0.722 Sum_probs=14.7
Q ss_pred cceecCCCccccccccc
Q psy15627 49 SRVDWNTSHAFRHTPFV 65 (77)
Q Consensus 49 R~y~~~~~~~~~~~~~~ 65 (77)
-+|+|..|.|+-+-|+.
T Consensus 2 tpftweesnayywqpya 18 (26)
T 1g0y_I 2 TPFTWEESNAYYWQPYA 18 (26)
T ss_dssp CCCCHHHHHHHEECTTC
T ss_pred Cccceecccceeecccc
Confidence 47999999999999973
No 3
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=55.08 E-value=3.8 Score=30.95 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=25.3
Q ss_pred CccHHHHHHHhhcccceeEeecCCCCCcc-----ccceecCCCcccccccc
Q psy15627 19 PEAAYSSVSTLGEAGIVQFRDEERPMCVS-----SSRVDWNTSHAFRHTPF 64 (77)
Q Consensus 19 ~E~A~d~V~eLGeLGlVQF~DLN~~v~af-----qR~y~~~~~~~~~~~~~ 64 (77)
.|.-.+.|+++|---..+-.++-+.-... +-.+.|++|-.|+||-|
T Consensus 334 ~ER~g~~i~R~G~~~f~~~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~ 384 (386)
T 3or1_B 334 YERIGDWIHRIGWETFYEKTGLEFSHHCIDDFRDPAYYTWRQSTQFKFVSF 384 (386)
T ss_dssp TCCHHHHHHHHCHHHHHHHHCCCCCGGGSCCSSGGGGGGBCCSSCCCCCGG
T ss_pred CCCHHHHHHHcCHHHHHHHHCCCCChHHhcCcccCcceEeeeeeeEEEeec
Confidence 34444455555543333333343221111 12389999999999987
No 4
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=39.54 E-value=24 Score=21.98 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.2
Q ss_pred ccCCceEEEEecCccHHHHHHHhhcccc
Q psy15627 7 SEEMALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 7 SE~M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
+.+|.++..+++++..-+..+.|-+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 4579999999999999999999999885
No 5
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=39.29 E-value=26 Score=21.58 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=24.2
Q ss_pred cCCceEEEEecCccHHHHHHHhhcccc
Q psy15627 8 EEMALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 8 E~M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
+.|.++..+++++.+-+..+.|-+.|.
T Consensus 1 ~~Mk~I~aIIr~~~~~~v~~aL~~~G~ 27 (114)
T 3bzq_A 1 GHMKLITAIVKPFTLDDVKTSLEDAGV 27 (114)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 469999999999999999999998874
No 6
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=38.58 E-value=34 Score=22.36 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=28.6
Q ss_pred CcccccCCceEEEEecCccHHHHHHHhhcccc
Q psy15627 3 AMFRSEEMALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 3 slfRSE~M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
..|=+++|.++..+++++..-+..+.|-+.|.
T Consensus 6 ~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~ 37 (135)
T 2o66_A 6 DYIPDSKFYKVEAIVRPWRIQQVSSALLKIGI 37 (135)
T ss_dssp SCSSCCSEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcCCCCCeEEEEEEECHHHHHHHHHHHHHCCC
Confidence 46778899999999999999999999998884
No 7
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=32.25 E-value=40 Score=22.02 Aligned_cols=28 Identities=25% Similarity=0.083 Sum_probs=25.2
Q ss_pred ccCCceEEEEecCccHHHHHHHhhcc-cc
Q psy15627 7 SEEMALCQLFIQPEAAYSSVSTLGEA-GI 34 (77)
Q Consensus 7 SE~M~l~qLiip~E~A~d~V~eLGeL-Gl 34 (77)
|.++.+..++++++.--+..+.|-+. |.
T Consensus 20 ~~~~~lI~aIIrP~kld~V~daL~~~~gi 48 (120)
T 3ce8_A 20 MSTEQLLVLIAQNDIKDDIVDTLIELEFL 48 (120)
T ss_dssp CCSEEEEEEEEEGGGHHHHHHHHTTCTTC
T ss_pred CccceEEEEEeCHHHHHHHHHHHHhCCCC
Confidence 67788999999999999999999998 65
No 8
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=29.87 E-value=49 Score=20.26 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.6
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|.+...+++++..-+..+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 2eg2_A 1 MKKIEAIIKPFKLDEVKDALVEIGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999998874
No 9
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=28.44 E-value=54 Score=20.21 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|.+...+++++.+-+..+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~V~~aL~~~G~ 25 (116)
T 1vfj_A 1 MKLIVAIVRPEKLNEVLKALFQAEV 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCC
Confidence 7889999999999999999998874
No 10
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=27.89 E-value=56 Score=19.94 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.8
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|..+..+++++..-+..+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 1hwu_A 1 MKQVTAIIKPFKLDEVRESLAEVGV 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999999885
No 11
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=27.25 E-value=56 Score=20.80 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.9
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|..+..+|+++..-+..++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~ 25 (118)
T 3t9z_A 1 MKMVVAVIRPEKLECVKKALEERGF 25 (118)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999999884
No 12
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=26.88 E-value=53 Score=20.25 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCceEEEEecCccHHHHHHHhhcccc
Q psy15627 9 EMALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 9 ~M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
.|.++..+++++..-+..+.|-+.|.
T Consensus 2 ~Mk~I~aII~~~~~~~v~~aL~~~G~ 27 (114)
T 2gw8_A 2 PMKKIEAIVKPFKLDDVREALTEIGI 27 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 48999999999999999999998874
No 13
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=26.84 E-value=60 Score=20.70 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.9
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|..+..+|+++..-+..++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~ 25 (119)
T 3ncq_A 1 MKKIEAIVRAEKFPEVKAALEERGF 25 (119)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999999884
No 14
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=25.51 E-value=46 Score=24.65 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=28.9
Q ss_pred CccHHHHHHHhhcccceeEeecCCCCCccccceecCCCccccccccccccee
Q psy15627 19 PEAAYSSVSTLGEAGIVQFRDEERPMCVSSSRVDWNTSHAFRHTPFVKGLGI 70 (77)
Q Consensus 19 ~E~A~d~V~eLGeLGlVQF~DLN~~v~afqR~y~~~~~~~~~~~~~~~~~~~ 70 (77)
.|..+.++..|-.+|.|++++= .+--||-||-|+|.|-
T Consensus 152 ~ekv~~sLrrL~RlgmI~~~~~--------------d~~kf~iteavfRF~a 189 (234)
T 3euh_C 152 QEKVRSSLNRLRRLGMVWFMGH--------------DSSKFRITESVFRFGA 189 (234)
T ss_dssp HHHHHHHHHHHHHTTSEEECSS--------------SSSEEEECGGGGGGGH
T ss_pred HHHHHHHHHHHHhcCcEEEecC--------------CCCeEEecHHHHhhcc
Confidence 3567889999999999999862 2345777887777764
No 15
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=24.38 E-value=67 Score=19.97 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.6
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|.....+++++..-+..++|-+.|.
T Consensus 1 MK~I~aIIr~~kl~~vk~AL~~~G~ 25 (112)
T 3mhy_A 1 MKLVMAIIKPFKLDEVREALTSLGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999988885
No 16
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=24.24 E-value=70 Score=20.20 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.8
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|..+..+++++..-+..++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~vk~AL~~~G~ 25 (116)
T 4aff_A 1 MKKIEAIIRPFKLDEVKIALVNAGI 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999999884
No 17
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=23.55 E-value=62 Score=20.18 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=23.2
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|.++..+++++..-+..+.|-+.|.
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~G~ 27 (119)
T 2j9c_A 3 MKKVEAIIRPEKLEIVKKALSDAGY 27 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCC
Confidence 8899999999999999999999884
No 18
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=21.01 E-value=80 Score=19.86 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=23.3
Q ss_pred CceEEEEecCccHHHHHHHhhcccc
Q psy15627 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (77)
Q Consensus 10 M~l~qLiip~E~A~d~V~eLGeLGl 34 (77)
|.....+++++..-+..+.|-+.|.
T Consensus 3 MKkI~AIIrp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 3 MKKIEAIIRSDKLEDLKAALVQSGF 27 (115)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCC
Confidence 8899999999999999999999886
Done!