RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15627
         (77 letters)



>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
          subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
          {Meiothermus ruber}
          Length = 357

 Score = 50.1 bits (119), Expect = 4e-09
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 2  GAMFRSEEMALCQLFIQPEAAYSSVSTLGEAGIVQFRD 39
          G +   ++M    +      A   ++ L +AG+V    
Sbjct: 6  GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDP 43


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.098
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 44  MCVSSSRVDWNTSHAFRHTPFVK-GLGIALPLGSI 77
            C+    V W T+  F+ T  +  G G A  LG +
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515


>4dnh_A Uncharacterized protein; structural genomics, PSI-biology,
          protein structure initiati YORK structural genomics
          research consortium; 2.50A {Sinorhizobium meliloti}
          Length = 396

 Score = 26.5 bits (58), Expect = 0.73
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 47 SSSRVDWNTSHAFRHTPFVKGLGIALPLGS 76
           +  +DW  + AFRH  +  GLG+A  + +
Sbjct: 55 LAPAIDWERTLAFRHRLWDLGLGVAESMDT 84


>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
           biosynthesis, transferase, glycosyltransferase, gluta
           amidotransferase; HET: PIN; 2.00A {Escherichia coli}
           SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
           1ecj_A*
          Length = 504

 Score = 25.6 bits (57), Expect = 1.5
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 11  ALCQLFIQPEAAYSSVSTLGEAGIVQFRDEE--RPMC 45
           A+         AY+ V+ +   G+V FRD    RP+ 
Sbjct: 155 AIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLV 191


>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
           HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
          Length = 1014

 Score = 25.2 bits (55), Expect = 2.4
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 19  PEAAYSSVSTLGEAGIVQFRD 39
               YSS     E  I +F++
Sbjct: 546 LTGMYSSDPKNPEKRIAEFKN 566


>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
           1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
          Length = 714

 Score = 24.6 bits (54), Expect = 3.5
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 19  PEAAYSSVSTLGEAGIVQFRD 39
               YSS     E  I +F++
Sbjct: 239 LTGMYSSDPKNPEKRIAEFKN 259


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 24.1 bits (52), Expect = 7.0
 Identities = 6/51 (11%), Positives = 18/51 (35%)

Query: 6    RSEEMALCQLFIQPEAAYSSVSTLGEAGIVQFRDEERPMCVSSSRVDWNTS 56
            ++E +      I  EA     +   + G   ++ + R   +  +   +  +
Sbjct: 1283 QNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLT 1333


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,135,497
Number of extensions: 50810
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 7
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)