Query psy15628
Match_columns 90
No_of_seqs 105 out of 282
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:34:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 99.2 3.4E-12 1.2E-16 96.9 3.5 73 2-74 6-82 (357)
2 2ra2_A Putative lipoprotein; X 27.8 18 0.00061 22.1 0.7 32 32-63 28-59 (64)
3 2ns1_B Nitrogen regulatory pro 27.7 50 0.0017 21.0 2.9 28 7-34 2-29 (116)
4 3bzq_A Nitrogen regulatory pro 26.1 59 0.002 20.4 3.0 27 8-34 1-27 (114)
5 1qqg_A IRS-1, insulin receptor 25.9 31 0.001 25.1 1.8 47 14-61 162-214 (264)
6 2o66_A PII protein; regulation 22.4 92 0.0032 20.7 3.6 32 3-34 6-37 (135)
7 2rd1_A Putative outer membrane 22.2 29 0.001 21.0 0.9 28 32-59 27-54 (62)
8 3ce8_A Putative PII-like nitro 20.5 91 0.0031 20.6 3.2 28 7-34 20-48 (120)
9 2eg2_A Nitrogen regulatory pro 19.7 98 0.0034 19.3 3.1 25 10-34 1-25 (112)
10 1vfj_A Nitrogen regulatory pro 18.6 1.1E+02 0.0036 19.3 3.1 25 10-34 1-25 (116)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.23 E-value=3.4e-12 Score=96.88 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=57.2
Q ss_pred CCcccccCCceEEEEeccchHHHHHHhhhhccceEEeecCCCccccc--cccc-cCcccchhhhhh-hhhhhccccC
Q psy15628 2 GAMFRSEEMALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQF--NRFQ-EERPMCVSSSRV-DWNTSHAFRH 74 (90)
Q Consensus 2 gslfRSE~M~l~qL~ip~E~A~~~v~eLG~lg~vqF~DlN~~v~~fq--R~f~-~eIrRcdEmeR~-~~l~~~~~~~ 74 (90)
|-|+|.|+|+.++|+.|.+.+++++++|+++|.|||+|+|++++.|+ ++|. +++++|+++.++ +++.+...+.
T Consensus 6 ~~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~ 82 (357)
T 3rrk_A 6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLA 82 (357)
T ss_dssp --------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhccc
Confidence 56999999999999999999999999999999999999999999999 7776 689999999995 6666643333
No 2
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=27.80 E-value=18 Score=22.10 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=26.3
Q ss_pred ccceEEeecCCCccccccccccCcccchhhhh
Q psy15628 32 AGIVQFRDVSITLDTQFNRFQEERPMCVSSSR 63 (90)
Q Consensus 32 lg~vqF~DlN~~v~~fqR~f~~eIrRcdEmeR 63 (90)
-|++.|.|.|-.....+|.=+++|+..+.+|.
T Consensus 28 TGm~sY~D~~G~~~qIn~ddVk~i~e~~~~~~ 59 (64)
T 2ra2_A 28 TGMISYKDANGNKQQINRTDVKEMVALENLEH 59 (64)
T ss_dssp TCSEEEECTTSCEEEECGGGEEEEEECCCCC-
T ss_pred CCCEEEEcCCCCEEEEchHheeeeEEcCcccc
Confidence 48999999999998899988888887776653
No 3
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=27.70 E-value=50 Score=20.97 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.8
Q ss_pred ccCCceEEEEeccchHHHHHHhhhhccc
Q psy15628 7 SEEMALCQLFIQPEAAYSSVSTLGEAGI 34 (90)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~v~eLG~lg~ 34 (90)
+..|.+...|++.+.+-++.+.|-+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 4579999999999999999999988874
No 4
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=26.14 E-value=59 Score=20.39 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred cCCceEEEEeccchHHHHHHhhhhccc
Q psy15628 8 EEMALCQLFIQPEAAYSSVSTLGEAGI 34 (90)
Q Consensus 8 E~M~l~qL~ip~E~A~~~v~eLG~lg~ 34 (90)
+.|.+...+++++.+-++.+.|-+.|.
T Consensus 1 ~~Mk~I~aIIr~~~~~~v~~aL~~~G~ 27 (114)
T 3bzq_A 1 GHMKLITAIVKPFTLDDVKTSLEDAGV 27 (114)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 369999999999999999999988874
No 5
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=25.93 E-value=31 Score=25.14 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=32.5
Q ss_pred EEEeccchHHHHHHhhhhc------cceEEeecCCCccccccccccCcccchhh
Q psy15628 14 QLFIQPEAAYSSVSTLGEA------GIVQFRDVSITLDTQFNRFQEERPMCVSS 61 (90)
Q Consensus 14 qL~ip~E~A~~~v~eLG~l------g~vqF~DlN~~v~~fqR~f~~eIrRcdEm 61 (90)
++.+.+..|-+.-+..|.- ..+++.++|+++..+.-+| ..||||--.
T Consensus 162 ~V~v~~~~~~~~~~L~G~y~l~l~~~~l~L~~~~~~~~~~~wpl-~~lRr~G~~ 214 (264)
T 1qqg_A 162 QVILKPKGLGQTKNLIGIYRLCLTSKTISFVKLNSEAAAVVLQL-MNIRRCGHS 214 (264)
T ss_dssp EEEEEEEEHHHHTTCCEEEEEEECSSEEEEEETTCSSCSEEEEG-GGEEEEEEE
T ss_pred EEEEEecccccccCCCCceEEEEeCcEEEEEecCCCcceEEeeh-hheeccccc
Confidence 5555544444444444433 3589999999999999997 589999644
No 6
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=22.39 E-value=92 Score=20.66 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=28.1
Q ss_pred CcccccCCceEEEEeccchHHHHHHhhhhccc
Q psy15628 3 AMFRSEEMALCQLFIQPEAAYSSVSTLGEAGI 34 (90)
Q Consensus 3 slfRSE~M~l~qL~ip~E~A~~~v~eLG~lg~ 34 (90)
..|=+.+|.+...+++++.+-++.+.|-+.|.
T Consensus 6 ~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~ 37 (135)
T 2o66_A 6 DYIPDSKFYKVEAIVRPWRIQQVSSALLKIGI 37 (135)
T ss_dssp SCSSCCSEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcCCCCCeEEEEEEECHHHHHHHHHHHHHCCC
Confidence 35668899999999999999999999988874
No 7
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=22.25 E-value=29 Score=21.01 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=22.9
Q ss_pred ccceEEeecCCCccccccccccCcccch
Q psy15628 32 AGIVQFRDVSITLDTQFNRFQEERPMCV 59 (90)
Q Consensus 32 lg~vqF~DlN~~v~~fqR~f~~eIrRcd 59 (90)
-|++.|.|.|......+|.=+++|+..|
T Consensus 27 TGm~sY~D~~G~~~qIn~ddVk~i~e~~ 54 (62)
T 2rd1_A 27 TGMTSYTDQEGNQREINSNDVAQLIKAD 54 (62)
T ss_dssp TTEEEEECTTSCEEEEEGGGEEEEEECC
T ss_pred CCCEEEEcCCCCEEEEcHHHhhhHhhhh
Confidence 4899999999998888888777776654
No 8
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.50 E-value=91 Score=20.63 Aligned_cols=28 Identities=25% Similarity=0.083 Sum_probs=25.0
Q ss_pred ccCCceEEEEeccchHHHHHHhhhhc-cc
Q psy15628 7 SEEMALCQLFIQPEAAYSSVSTLGEA-GI 34 (90)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~v~eLG~l-g~ 34 (90)
|.++.+..++++++.--+..+.|-+. |.
T Consensus 20 ~~~~~lI~aIIrP~kld~V~daL~~~~gi 48 (120)
T 3ce8_A 20 MSTEQLLVLIAQNDIKDDIVDTLIELEFL 48 (120)
T ss_dssp CCSEEEEEEEEEGGGHHHHHHHHTTCTTC
T ss_pred CccceEEEEEeCHHHHHHHHHHHHhCCCC
Confidence 67788999999999999999999998 64
No 9
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=19.73 E-value=98 Score=19.31 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred CceEEEEeccchHHHHHHhhhhccc
Q psy15628 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (90)
Q Consensus 10 M~l~qL~ip~E~A~~~v~eLG~lg~ 34 (90)
|.+...+++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 2eg2_A 1 MKKIEAIIKPFKLDEVKDALVEIGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999988873
No 10
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=18.64 E-value=1.1e+02 Score=19.26 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.3
Q ss_pred CceEEEEeccchHHHHHHhhhhccc
Q psy15628 10 MALCQLFIQPEAAYSSVSTLGEAGI 34 (90)
Q Consensus 10 M~l~qL~ip~E~A~~~v~eLG~lg~ 34 (90)
|.+...+++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~V~~aL~~~G~ 25 (116)
T 1vfj_A 1 MKLIVAIVRPEKLNEVLKALFQAEV 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCC
Confidence 7888999999999999999988874
Done!